HHsearch alignment for GI: 254780619 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.24 E-value=0.014 Score=38.83 Aligned_cols=118 Identities=24% Similarity=0.299 Sum_probs=70.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC----------EEEEEE-CCCCCHHHHH
Q ss_conf 19984475315799999999998514684799715210013445554303897----------689962-3557235667
Q gi|254780619|r 220 VSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGV----------KPAEWH-SSLSTSMREK 288 (731)
Q Consensus 220 ~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~----------~v~v~H-S~ls~~eR~~ 288 (731)
T Consensus 14 iTQiYGp~G~GKTn~c~~~a~~a~~~Gk~v~YiDTEGGLS~---ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~~-- 88 (223)
T TIGR02237 14 ITQIYGPPGSGKTNICLILAVNAARQGKKVVYIDTEGGLSP---ERFKQIAEDRALDPERVLSNVIVFEVFDFDEQEV-- 88 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHH---HHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHHH--
T ss_conf 88987589986789999999999861895899962898328---9999986305889888841535523535678999--
Q ss_pred HHHHHHCCCCEEEEECCHHHHHHH--CCCEEEEEE--------ECCCCCCHHCCCCCCCHHH--HHHHHHHHCCCCEEC
Q ss_conf 899997199739994001211001--000136774--------0553210000244322489--999975110321000
Q gi|254780619|r 289 IWRQVARGAISVIVGVRSALFLPF--KKLGLIVID--------EEHDISYKQEEGILYNARD--MSIVRGKIESFPVVL 355 (731)
Q Consensus 289 ~w~~i~~G~~~IVIGtRSAif~P~--~nLglIIvD--------EEHd~sykq~~~pry~aRd--vA~~Ra~~~~~~lil 355 (731)
T Consensus 89 ---ai~----------~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~~~~~~l~~Ql~~Ll~lArk~~~AVvi 154 (223)
T TIGR02237 89 ---AIQ----------KTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQISLNRELARQLTLLLSLARKKDLAVVI 154 (223)
T ss_pred ---HHH----------HHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf ---999----------999998606883314888153345420257860256799999999999999998764997899