HHsearch alignment for GI: 254780619 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.43 E-value=2.4e-11 Score=105.84 Aligned_cols=153 Identities=19% Similarity=0.231 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC---C--CCEEEEE
Q ss_conf 8999999987520489619984475315799999999998514684799715210013445554303---8--9768996
Q gi|254780619|r 203 QQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---F--GVKPAEW 277 (731)
Q Consensus 203 Q~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~r---F--~~~v~v~ 277 (731)
T Consensus 2 q~~~~~~~~~~~---~~~ivitAPTgsGKT~Aa~lp---~l~~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~~~ 75 (357)
T TIGR03158 2 QVATFEALQSKD---ADIIFNTAPTGAGKTLAWLTP---LLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred HHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHH---HHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf 689999997689---986999899985699999999---97389879997778999999999999999874423464402
Q ss_pred E--CCC-----------CC---HHH-HHHH-HHHHCCCCEEEEECCHHHHH---------------HHCCCEEEEEEECC
Q ss_conf 2--355-----------72---356-6789-99971997399940012110---------------01000136774055
Q gi|254780619|r 278 H--SSL-----------ST---SMR-EKIW-RQVARGAISVIVGVRSALFL---------------PFKKLGLIVIDEEH 324 (731)
Q Consensus 278 H--S~l-----------s~---~eR-~~~w-~~i~~G~~~IVIGtRSAif~---------------P~~nLglIIvDEEH 324 (731)
T Consensus 76 ~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDEiH 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEH
T ss_conf 11464323344465555343445410256654302589909992889999997620136510399998516747756200
Q ss_pred CCCCHHCCC--CCCCHHHHHHHHHHHCCCCEECCCCCCCHH
Q ss_conf 321000024--432248999997511032100002454324
Q gi|254780619|r 325 DISYKQEEG--ILYNARDMSIVRGKIESFPVVLVSATPSIE 363 (731)
Q Consensus 325 d~sykq~~~--pry~aRdvA~~Ra~~~~~~lilgSATPSle 363 (731)
T Consensus 156 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~ 194 (357)
T TIGR03158 156 --LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA 194 (357)
T ss_pred --CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf --006762089999999999986336898089982799803