HHsearch alignment for GI: 254780619 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.43  E-value=2.4e-11  Score=105.84  Aligned_cols=153  Identities=19%  Similarity=0.231  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCC---C--CCEEEEE
Q ss_conf             8999999987520489619984475315799999999998514684799715210013445554303---8--9768996
Q gi|254780619|r  203 QQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKR---F--GVKPAEW  277 (731)
Q Consensus       203 Q~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~r---F--~~~v~v~  277 (731)
T Consensus         2 q~~~~~~~~~~~---~~~ivitAPTgsGKT~Aa~lp---~l~~~~~~lyi~P~kAL~~Dq~~~l~~~~~~~~~~~~~~~~   75 (357)
T TIGR03158         2 QVATFEALQSKD---ADIIFNTAPTGAGKTLAWLTP---LLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL   75 (357)
T ss_pred             HHHHHHHHHCCC---CCEEEEECCCCCCHHHHHHHH---HHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCEE
T ss_conf             689999997689---986999899985699999999---97389879997778999999999999999874423464402


Q ss_pred             E--CCC-----------CC---HHH-HHHH-HHHHCCCCEEEEECCHHHHH---------------HHCCCEEEEEEECC
Q ss_conf             2--355-----------72---356-6789-99971997399940012110---------------01000136774055
Q gi|254780619|r  278 H--SSL-----------ST---SMR-EKIW-RQVARGAISVIVGVRSALFL---------------PFKKLGLIVIDEEH  324 (731)
Q Consensus       278 H--S~l-----------s~---~eR-~~~w-~~i~~G~~~IVIGtRSAif~---------------P~~nLglIIvDEEH  324 (731)
T Consensus        76 ~~~~~~~~~~~~~~~d~~~~~~g~~~~~~~r~~~~~~~p~ILlTtPd~l~~~l~~~~~~~~~~~~~~~~~l~~VViDEiH  155 (357)
T TIGR03158        76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH  155 (357)
T ss_pred             ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEECHHHHHHHHHHHCCCCCHHHHHHHHCCCEEEEEEEH
T ss_conf             11464323344465555343445410256654302589909992889999997620136510399998516747756200


Q ss_pred             CCCCHHCCC--CCCCHHHHHHHHHHHCCCCEECCCCCCCHH
Q ss_conf             321000024--432248999997511032100002454324
Q gi|254780619|r  325 DISYKQEEG--ILYNARDMSIVRGKIESFPVVLVSATPSIE  363 (731)
Q Consensus       325 d~sykq~~~--pry~aRdvA~~Ra~~~~~~lilgSATPSle  363 (731)
T Consensus       156 --~y~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~  194 (357)
T TIGR03158       156 --LYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA  194 (357)
T ss_pred             --CCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH
T ss_conf             --006762089999999999986336898089982799803