HHsearch alignment for GI: 254780619 and conserved domain: TIGR03420
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.83 E-value=0.026 Score=36.76 Aligned_cols=37 Identities=30% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8961998447531579999999999851468479971
Q gi|254780619|r 217 GFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILL 253 (731)
Q Consensus 217 ~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLv 253 (731)
T Consensus 37 ~~~~l~i~G~~GsGKTHLl~a~~~~~~~~~~~~~yl~ 73 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP 73 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 8886999899999889999999999862699579952