HHsearch alignment for GI: 254780619 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.61 E-value=0.42 Score=27.57 Aligned_cols=131 Identities=24% Similarity=0.291 Sum_probs=71.5
Q ss_pred CEEEEECCCCHHHHHHHHHHHHH-HHHCCCCEEEEECCCHHHHHHHHHHHCCC-CCEEEEE-ECCCCCHHHHHHHHHHH-
Q ss_conf 61998447531579999999999-85146847997152100134455543038-9768996-23557235667899997-
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAA-VLHLGKQVLILLPEISLTSAILERFQKRF-GVKPAEW-HSSLSTSMREKIWRQVA- 294 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~-~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v~v~-HS~ls~~eR~~~w~~i~- 294 (731)
T Consensus 195 ~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs-~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~a~~~ 273 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS-AEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDR 273 (421)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC-HHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 6899985467874599999999999866983899925799-999999999985489776665289998999999999998
Q ss_pred CCCCEEEEECCHHH-----------H-HHHCCCEEEEEEECCCCCCHHCCCC-----CCC-----HHHHHHHHHHHCCCC
Q ss_conf 19973999400121-----------1-0010001367740553210000244-----322-----489999975110321
Q gi|254780619|r 295 RGAISVIVGVRSAL-----------F-LPFKKLGLIVIDEEHDISYKQEEGI-----LYN-----ARDMSIVRGKIESFP 352 (731)
Q Consensus 295 ~G~~~IVIGtRSAi-----------f-~P~~nLglIIvDEEHd~sykq~~~p-----ry~-----aRdvA~~Ra~~~~~~ 352 (731)
T Consensus 274 l~~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livID------YLqLi~~~~~~~r~~ei~~Isr~L-K~lAkel~ip 346 (421)
T TIGR03600 274 LSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVD------YIQLMAPTRGRDRNEELGGISRGL-KALAKELDVP 346 (421)
T ss_pred HHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEC------HHHHCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCC
T ss_conf 616878996699887678999999999862898699975------786537888888899999999999-9999997997
Q ss_pred EECCC
Q ss_conf 00002
Q gi|254780619|r 353 VVLVS 357 (731)
Q Consensus 353 lilgS 357 (731)
T Consensus 347 Vi~ls 351 (421)
T TIGR03600 347 VVLLA 351 (421)
T ss_pred EEEEC
T ss_conf 89970