HHsearch alignment for GI: 254780619 and conserved domain: TIGR03676

>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=92.80  E-value=0.41  Score=27.64  Aligned_cols=91  Identities=24%  Similarity=0.308  Sum_probs=45.8

Q ss_pred             HHHHHHHHCCCC--EEEEEECCCCEEHHCCCCCCCCCCCCCCCCCEEEEECCCCCCEECHHHCCCCCCCCCCCCCCCCEE
Q ss_conf             999988622655--179974222000000235654343101465201211357832000021024465556667874110
Q gi|254780619|r  411 IDGIRHTLARNE--QTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKM  488 (731)
Q Consensus       411 ~~~i~~~l~~g~--qvll~lnRrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~~l  488 (731)
T Consensus       293 ~~ev~kALemGAVetLLIsE~L~~~---------R~~~kc~~c~~e~~~~~~~~---------~~~~~~~c~~cg~~~e~  354 (403)
T TIGR03676       293 EEEVRKALEMGAVDTLLISEDLRKI---------RVTFKCPNCGYEEEKTVKPE---------EGDKSEACPKCGSELEI  354 (403)
T ss_pred             HHHHHHHHHCCCCCEEEEECCCCCE---------EEEEECCCCCCEEEEECCCC---------CCCCCCCCCCCCCCEEE
T ss_conf             9999999862973169873256622---------79997688882588731544---------34456688556872046


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCHHHHCCCCCCCC
Q ss_conf             013542899888852048520001023211358
Q gi|254780619|r  489 IACGFGIERIAEEVCEYFPLARISILSSDLEGG  521 (731)
Q Consensus       489 ~~~G~Gte~~~e~l~~~fp~~~v~~~d~d~~~~  521 (731)
T Consensus       355 ~e~~dliE~L~e~ak~-~-Ga~ve~IS~~seEG  385 (403)
T TIGR03676       355 VEEEDIIEELSELAEE-S-GAKVEIISTDTEEG  385 (403)
T ss_pred             EECCCHHHHHHHHHHH-C-CCEEEEEECCCCCH
T ss_conf             4136189999999997-3-98899990898107