HHsearch alignment for GI: 254780619 and conserved domain: cd01120
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.42 E-value=0.038 Score=35.55 Aligned_cols=45 Identities=31% Similarity=0.443 Sum_probs=36.5
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHH
Q ss_conf 9984475315799999999998514684799715210013445554
Q gi|254780619|r 221 SLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERF 266 (731)
Q Consensus 221 ~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl 266 (731)
T Consensus 2 ~li~g~~g~GKttl~~~~~~~~~~~~~~~~~~~~ee~~-~q~~~~~ 46 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI-EELTERL 46 (165)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHH
T ss_conf 89998999989999999999987639979999866644-8999999