HHsearch alignment for GI: 254780619 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.83 E-value=0.021 Score=37.43 Aligned_cols=138 Identities=16% Similarity=0.112 Sum_probs=77.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCHHHHHHHHHHHCCC-CCEEE-EEECCCCCHHHHHHHHHHHC
Q ss_conf 61998447531579999999999851-46847997152100134455543038-97689-96235572356678999971
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLH-LGKQVLILLPEISLTSAILERFQKRF-GVKPA-EWHSSLSTSMREKIWRQVAR 295 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~-~GkqvLiLvPEI~Lt~Q~~~rl~~rF-~~~v~-v~HS~ls~~eR~~~w~~i~~ 295 (731)
T Consensus 31 eL~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~-~~~~~Rlls~~~g~~~~~~~~~~~~~~e~~~~~~~~~~ 109 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPV-VRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAFDEFE 109 (271)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCH-HHHHHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf 08999968998699999999999999769908999704999-99999999998299711034467780999999999970
Q ss_pred CCCEEEE----EC------CHHH--HHHHCCCEEEEEEECCCCCC-HHCCCCCCCH-----HHHHHHHHHHCCCCEECCC
Q ss_conf 9973999----40------0121--10010001367740553210-0002443224-----8999997511032100002
Q gi|254780619|r 296 GAISVIV----GV------RSAL--FLPFKKLGLIVIDEEHDISY-KQEEGILYNA-----RDMSIVRGKIESFPVVLVS 357 (731)
Q Consensus 296 G~~~IVI----Gt------RSAi--f~P~~nLglIIvDEEHd~sy-kq~~~pry~a-----RdvA~~Ra~~~~~~lilgS 357 (731)
T Consensus 110 ~~~~l~i~d~~~~~~~~~i~~~ir~~~~~~~~~~vvIDylqll~~~~~~~~d~~~~i~~i~~~L-k~lAke~~v~Vi~ls 188 (271)
T cd01122 110 GTGRLFMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKL-RGFATEHGIHITLVS 188 (271)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHH-HHHHHHHCCCEEEEE
T ss_conf 7998088789999889999999999998289988998317850367867731899999999999-999999799779995
Q ss_pred C
Q ss_conf 4
Q gi|254780619|r 358 A 358 (731)
Q Consensus 358 A 358 (731)
T Consensus 189 Q 189 (271)
T cd01122 189 H 189 (271)
T ss_pred C
T ss_conf 2