HHsearch alignment for GI: 254780619 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.82 E-value=0.17 Score=30.55 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=37.0
Q ss_pred EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf 199844753157999999999985146847997152100134455543
Q gi|254780619|r 220 VSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQ 267 (731)
Q Consensus 220 ~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~ 267 (731)
T Consensus 1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~-~~~l~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAE 47 (187)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHH
T ss_conf 91587689999999999999999876997899995079-999999999