HHsearch alignment for GI: 254780619 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.82  E-value=0.17  Score=30.55  Aligned_cols=47  Identities=32%  Similarity=0.396  Sum_probs=37.0

Q ss_pred             EEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHH
Q ss_conf             199844753157999999999985146847997152100134455543
Q gi|254780619|r  220 VSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQ  267 (731)
Q Consensus       220 ~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~  267 (731)
T Consensus         1 stLi~G~pGsGKT~~a~qfl~~~a~~ge~~lyis~eE~-~~~l~~~~~   47 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEES-PEELIENAE   47 (187)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-HHHHHHHHH
T ss_conf             91587689999999999999999876997899995079-999999999