HHsearch alignment for GI: 254780619 and conserved domain: cd01126
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.23 E-value=0.33 Score=28.35 Aligned_cols=55 Identities=20% Similarity=0.267 Sum_probs=39.8
Q ss_pred EEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 9984475315799999999998514684799715210013445554303897689962
Q gi|254780619|r 221 SLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWH 278 (731)
Q Consensus 221 ~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~v~H 278 (731)
T Consensus 2 ~lvig~tGsGKt~~~--vip~ll~~~~s~vv~D~Kgel~-~~t~~~~~~~G~~v~v~n 56 (384)
T cd01126 2 VLVFAPTRSGKGVGF--VIPNLLTWPGSVVVLDPKGENF-ELTSEHRRALGRKVFVFD 56 (384)
T ss_pred EEEECCCCCCHHHHH--HHHHHHHCCCCEEEEECCHHHH-HHHHHHHHHCCCEEEEEE
T ss_conf 799889999731899--9999981899889994878999-999999998799689981