HHsearch alignment for GI: 254780619 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.94 E-value=0.51 Score=26.86 Aligned_cols=49 Identities=27% Similarity=0.267 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 688378999999987520489619984475315799999999998514684799
Q gi|254780619|r 198 ILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLI 251 (731)
Q Consensus 198 ~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLi 251 (731)
T Consensus 9 ~~~~~~~~~L~~~v~~----~~nIlIsG~tGSGKTTll-~al~~~i~~~~rivt 57 (186)
T cd01130 9 TFSPLQAAYLWLAVEA----RKNILISGGTGSGKTTLL-NALLAFIPPDERIIT 57 (186)
T ss_pred CCCHHHHHHHHHHHHC----CCCEEEECCCCCCHHHHH-HHHHHHCCCCCCEEE
T ss_conf 9999999999999985----998999899999899999-999961334564598