HHsearch alignment for GI: 254780619 and conserved domain: pfam00154
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=93.73 E-value=0.59 Score=26.40 Aligned_cols=70 Identities=23% Similarity=0.206 Sum_probs=51.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEE-EEECCCCC-HHHHHHHHH
Q ss_conf 619984475315799999999998514684799715210013445554303897689-96235572-356678999
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPA-EWHSSLST-SMREKIWRQ 292 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~Q~~~rl~~rF~~~v~-v~HS~ls~-~eR~~~w~~ 292 (731)
T Consensus 53 Ri~ei~G~essGKTtlal~~ia~aQk~gg~~~~iD~E~a~d~~~a~~l----GVD~~~l~~~qpd~~Eqal~i~~~ 124 (322)
T pfam00154 53 RIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKL----GVDIDNLLVSQPDTGEQALEIADM 124 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHCCHHHHHHC----CCCHHHEEEECCCHHHHHHHHHHH
T ss_conf 089998898777899999999999734993899853660598899980----988025389778839999999999