HHsearch alignment for GI: 254780619 and conserved domain: pfam00580
>pfam00580 UvrD-helicase UvrD/REP helicase. The Rep family helicases are composed of four structural domains. The Rep family function as dimers. REP helicases catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. Bacillus subtilis addA and Escherichia coli exodeoxyribonuclease V beta have large insertions near to the carboxy-terminus relative to other members of the family.
Probab=96.45 E-value=0.0047 Score=42.43 Aligned_cols=67 Identities=25% Similarity=0.320 Sum_probs=50.5
Q ss_pred CCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHC-C---CCEEEEECCCHHHHHHHHHHHCCCCC
Q ss_conf 88378999999987520489619984475315799999999998514-6---84799715210013445554303897
Q gi|254780619|r 199 LDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHL-G---KQVLILLPEISLTSAILERFQKRFGV 272 (731)
Q Consensus 199 Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~-G---kqvLiLvPEI~Lt~Q~~~rl~~rF~~ 272 (731)
T Consensus 1 Ln~~Q~~av~~~-------~~~llV~AgAGSGKT~~L~~Ri~~li~~~~~~p~~IL~lTFT~kAA~Em~~Ri~~~l~~ 71 (494)
T pfam00580 1 LNPEQRKAVTHL-------GGPLLVLAGAGTGKTRVLTERIAYLILEGGIDPEEILAVTFTNKAAREMKERILKLLGK 71 (494)
T ss_pred CCHHHHHHHCCC-------CCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 998899998099-------99979997187068999999999999818999747876702899999999999987383