HHsearch alignment for GI: 254780619 and conserved domain: pfam03796
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.92 E-value=0.0097 Score=40.05 Aligned_cols=50 Identities=28% Similarity=0.367 Sum_probs=39.7
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHH-HHCCCCEEEEECCCHHHHHHHHHHHCC
Q ss_conf 619984475315799999999998-514684799715210013445554303
Q gi|254780619|r 219 AVSLISGVTGSGKTEVYLEIVAAV-LHLGKQVLILLPEISLTSAILERFQKR 269 (731)
Q Consensus 219 ~~~LL~GvTGSGKTEVYl~li~~~-L~~GkqvLiLvPEI~Lt~Q~~~rl~~r 269 (731)
T Consensus 20 ~l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~-~~~~~~R~~a~ 70 (186)
T pfam03796 20 DLIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMS-AEQLAERLLSS 70 (186)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCC-HHHHHHHHHHH
T ss_conf 1799996799987999999999999970996687547552-99999999998