HHsearch alignment for GI: 254780619 and conserved domain: pfam07517
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=96.92 E-value=0.0081 Score=40.65 Aligned_cols=128 Identities=18% Similarity=0.156 Sum_probs=85.9
Q ss_pred EEECCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHH---HHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 984475315799999999998514684799715210013---44555430389768996235572356678999971997
Q gi|254780619|r 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTS---AILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAI 298 (731)
Q Consensus 222 LL~GvTGSGKTEVYl~li~~~L~~GkqvLiLvPEI~Lt~---Q~~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~ 298 (731)
T Consensus 94 IaEM~TGEGKTL~atl~a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~LGLsvg~i~~~~~~~err~aY~------~ 167 (381)
T pfam07517 94 IAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVITSDMSPEERREAYN------C 167 (381)
T ss_pred EEEEECCCCCHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH------C
T ss_conf 2588769981199999999997379974899758888688999979999984860542278898488898751------6
Q ss_pred EEEEECCHHH-H-------------HHHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHCCCCEECCCCCCCHHH
Q ss_conf 3999400121-1-------------0010001367740553210000244322489999975110321000024543246
Q gi|254780619|r 299 SVIVGVRSAL-F-------------LPFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIES 364 (731)
Q Consensus 299 ~IVIGtRSAi-f-------------~P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra~~~~~~lilgSATPSles 364 (731)
T Consensus 168 DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~~aIVDEv-DSiL--------------I---DEArtPLIISg~~~~~~~ 229 (381)
T pfam07517 168 DITYGTNSELGFDYLRDNMALSKEDKVQRGLNFAIVDEV-DSIL--------------I---DEARTPLIISGPVEDESE 229 (381)
T ss_pred CCEECCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECC-CHHE--------------E---ECCCCCCEECCCCCCCCH
T ss_conf 605503223214453234415825434577776999745-1121--------------2---046786354078876305
Q ss_pred HHHHHHHHH
Q ss_conf 775321234
Q gi|254780619|r 365 RVNGISRRY 373 (731)
Q Consensus 365 ~~~~~~g~~ 373 (731)
T Consensus 230 ~y~~~~~~~ 238 (381)
T pfam07517 230 LYLIADALV 238 (381)
T ss_pred HHHHHHHHH
T ss_conf 899999999