HHsearch alignment for GI: 254780619 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.53 E-value=4.1e-13 Score=119.38 Aligned_cols=157 Identities=22% Similarity=0.280 Sum_probs=115.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCC--CCEEEEECCCHHHHHHHHHHHCCCCCE
Q ss_conf 666883789999999875204896199844753157999999999985146--847997152100134455543038976
Q gi|254780619|r 196 LPILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLG--KQVLILLPEISLTSAILERFQKRFGVK 273 (731)
Q Consensus 196 ~~~Lt~eQ~~a~~~i~~~~~~~f~~~LL~GvTGSGKTEVYl~li~~~L~~G--kqvLiLvPEI~Lt~Q~~~rl~~rF~~~ 273 (731)
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~----~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~q~~~~~~~~~~~~ 81 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred CCCCCHHHHHHHHHHHCCC----CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCC
T ss_conf 9999988999999998389----988998999960999999999998633899759999085999999998860102102
Q ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHHH-------HHCCCEEEEEEECCCCCCHHCCCCCCCHHHHHHHHH
Q ss_conf 8996235572356678999971997399940012110-------010001367740553210000244322489999975
Q gi|254780619|r 274 PAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFL-------PFKKLGLIVIDEEHDISYKQEEGILYNARDMSIVRG 346 (731)
Q Consensus 274 v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif~-------P~~nLglIIvDEEHd~sykq~~~pry~aRdvA~~Ra 346 (731)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~~~~~~~~~vIiDE~H~~~~~---~~~~~~~~~~~~~- 157 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG---GFGDQLEKLLKLL- 157 (201)
T ss_pred EEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECHHHHHCC---CCHHHHHHHHHHC-
T ss_conf 044556524773799999997599989995589999999727545254319999896775125---7099999999967-
Q ss_pred HHCCCCEECCCCCCC
Q ss_conf 110321000024543
Q gi|254780619|r 347 KIESFPVVLVSATPS 361 (731)
Q Consensus 347 ~~~~~~lilgSATPS 361 (731)
T Consensus 158 -~~~~~~i~lSAT~~ 171 (201)
T smart00487 158 -PKNVQLLLLSATPP 171 (201)
T ss_pred -CCCCCEEEECCCCC
T ss_conf -99997899924898