HHsearch alignment for GI: 254780619 and conserved domain: smart00490
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=92.72 E-value=0.35 Score=28.18 Aligned_cols=58 Identities=31% Similarity=0.428 Sum_probs=45.0
Q ss_pred HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCHHHH-HHHCCCEEEEEE
Q ss_conf 55543038976899623557235667899997199739994001211-001000136774
Q gi|254780619|r 263 LERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALF-LPFKKLGLIVID 321 (731)
Q Consensus 263 ~~rl~~rF~~~v~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAif-~P~~nLglIIvD 321 (731)
T Consensus 4 ~~~l~~~-g~~~~~i~g~~~~~~R~~~~~~f~~~~~~ilv~t~~~~~Gidl~~~~~vI~~ 62 (82)
T smart00490 4 AELLKEL-GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIY 62 (82)
T ss_pred HHHHHHC-CCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCEEEEE
T ss_conf 9999888-9919999896999999999999987997199995024211489889999997