>gnl|CDD|161938 TIGR00580, mfd, transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. Length = 926

Score = 63.1 bits (154), Expect = 2e-10 Identities = 65/220 (29%), Positives = 97/220 (44%), Gaps = 37/220 (16%) Query: 222 LISGVTGSGKTEVYLE-IVAAVLHLGKQVLILLPEISLTSAILERFQKRF---GVKPAEW 277 L+ G G GKTEV + AVL GKQV +L+P L E F++RF V Sbjct: 476 LVCGDVGFGKTEVAMRAAFKAVLD-GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELL 534 Query: 278 HSSLSTSMREKIWRQVARGAISVIVGVRSAL--FLPFKKLGLIVIDEEHDISYKQEEGIL 335 S + +I +++A G I +++G L + FK LGL++IDEE KQ+E + Sbjct: 535 SRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGVKQKEKL- 593 Query: 336 YNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDM 395 +++ S V+ +SATP I R ++H+S S + L +I Sbjct: 594 ---KELRT------SVDVLTLSATP--------IPR---TLHMSM----SGIRDLSIIAT 629 Query: 396 ----RGQTIAQGKSLSPEMI-DGIRHTLARNEQTLLFLNR 430 R PE++ + IR L R Q NR Sbjct: 630 PPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNR 669

RPSBLAST alignment for GI: 254780619 and conserved domain: TIGR00580