RPSBLAST alignment for GI: 254780619 and conserved domain: TIGR00595
>gnl|CDD|161946 TIGR00595, priA, primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). Length = 505
Score = 546 bits (1410), Expect = e-156
Identities = 226/509 (44%), Positives = 323/509 (63%), Gaps = 8/509 (1%)
Query: 222 LISGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSL 281
L+ GVTGSGKTEVYL+ + VL LGK VL+L+PEI+LT +++RF+ RFG + A HS L
Sbjct: 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGL 60
Query: 282 STSMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDM 341
S S + + WR+V G I V++G RSALFLPFK LGLI++DEEHD SYKQEEG Y+ARD+
Sbjct: 61 SDSEKLQAWRKVKNGEILVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDV 120
Query: 342 SIVRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIA 401
++ R K + PVVL SATPS+ES N + Y + L+ R P +++IDMR +
Sbjct: 121 AVYRAKKFNCPVVLGSATPSLESYHNAKQKAYRLLVLTRRVSGRKPPEVKLIDMRKE--P 178
Query: 402 QGKSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSK 461
+ LSPE+I I TLA EQ++LFLNRRGY+ LC+ CG L C +C L H+ +
Sbjct: 179 RQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKE 238
Query: 462 KKLYCHQCGHSAIYSQSCVVCGSSGKMIA-CGFGIERIAEEVCEYFPLARISILSSDLEG 520
KL CH CG+ ++C CGS + + G+G E++ EE+ + FP ARI+ + SD
Sbjct: 239 GKLRCHYCGYQEPIPKTCPQCGS--EDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTS 296
Query: 521 GGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQ 580
G + L+ A G+ DI+IGTQ++AKGH+FP ++LVGV+D D GL + D R++ER FQ
Sbjct: 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQ 356
Query: 581 LLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQALVSGDADSFYESEIRARESVNLPPFGRL 640
LL+QV GRAGR +IQ Y P HP +QA ++GD ++FYE E+ R ++N PPF RL
Sbjct: 357 LLTQVAGRAGRAEDPGQVIIQTYNPNHPAIQAALTGDYEAFYEQELAQRRALNYPPFTRL 416
Query: 641 AAVIISGTKYQEVENYAYNLKEHAPRS--SDIVVFGPAESPLFMVRGRYRFRLLIHGKRN 698
+I G ++ + A E ++ + V GP+ +P+ + GRYR+++L+ K
Sbjct: 417 IRLIFRGKNEEKAQQTAQAAHELLKQNLDEKLEVLGPSPAPIAKIAGRYRYQILLKSKSF 476
Query: 699 SNLQGFFSQMYDNTIKRSNALRVQFDIDP 727
LQ ++ I S+++ + D+DP
Sbjct: 477 LVLQKLVNKTLLKEIP-SSSVYCEVDVDP 504