RPSBLAST alignment for GI: 254780619 and conserved domain: COG1061
>gnl|CDD|31261 COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]. Length = 442
Score = 44.7 bits (105), Expect = 9e-05
Identities = 68/428 (15%), Positives = 136/428 (31%), Gaps = 56/428 (13%)
Query: 165 HVIDGLKAQGVIKQIFEVISPVVDSPNLYFSLPILDKNQQDVVEQVV-PLCTKGFAVSLI 223
+ L ++G + V+ + + L Q++ ++ +V T+ V I
Sbjct: 3 DLKQYLSSKGAEELADYVLDEGLPLKLIVAFEFELRPYQEEALDALVKNRRTERRGV--I 60
Query: 224 SGVTGSGKTEVYLEIVAAVLHLGKQVLILLPEISLTSAILERFQKRFGVKPAEWHSSLST 283
TG+GKT V E +A L + L+L+P L E +K +
Sbjct: 61 VLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKELLDQWAEALKKFLL--LNDEIGIYGG 115
Query: 284 SMREKIWRQVARGAISVIVGVRSALFLPFKKLGLIVIDEEHDISYKQEEGILYNARDMSI 343
+E +V + + + + GLI+ DE H + I
Sbjct: 116 GEKELEPAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLP---------APSYRRI 166
Query: 344 VRGKIESFPVVLVSATPSIESRVNGISRRYHSVHLSTRYRNSALPHLQVIDMRGQTIAQG 403
+ ++P + ++ATP E G L V ++ + +
Sbjct: 167 LELLSAAYPRLGLTATP--EREDGGRIGDLFD-----------LIGPIVYEVSLKELIDE 213
Query: 404 KSLSPEMIDGIRHTLARNEQTLLFLNRRGYAPLTLCQVCGNRLKCLHCSCWLVEHRSKKK 463
L+P I+ TL +E+ + L R + + + + +K
Sbjct: 214 GYLAPYKYVEIKVTLTEDEER-EYAKESARFRELLRARGTLRAE--NEARRIAIASERKI 270
Query: 464 LYCHQCGHSAIYSQSCVVCGSSGKMIACGFGIERIAEEVCEYFPLARISILSSDLEGGGG 523
++ S + IA+ + I+ + E
Sbjct: 271 AAVRGLLLKHARGDKTLIFASDVE------HAYEIAKLFLAPGIVEAITGETPKEE---- 320
Query: 524 RLQLQLSAIAKGEIDIIIGTQLVAKGHNFPRMSLVGVVDGDLGLTNADLRSSERTFQLLS 583
R + L G I +++ +++ +G + P ++ ++ S R F
Sbjct: 321 REAI-LERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPT---------GSRRLFI--- 367
Query: 584 QVTGRAGR 591
Q GR R
Sbjct: 368 QRLGRGLR 375