RPSBLAST alignment for GI: 254780619 and conserved domain: COG1198
>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]. Length = 730
Score = 720 bits (1860), Expect = 0.0
Identities = 319/720 (44%), Positives = 430/720 (59%), Gaps = 18/720 (2%)
Query: 26 GPYIYSVPSAMKVE-LGSIVRVPLRSRTVLGIVWYNSEEKYKIDSLKLRPIEYVFDC-PP 83
P+ Y +P ++ + GS VRVP R V+GIV S E +D KL+ IE V D P
Sbjct: 14 RPFDYLIPEGLEPDQPGSRVRVPFGGRLVVGIVVELSSES-DVDGRKLKEIERVLDTEPV 72
Query: 84 LSRQMCEFVKWVADYTFSPMGLVARMVVSALSETEKMEEKIQ----------FTGIFPRI 133
L+ ++ ++W ADY SP+G V R+ + L + + +
Sbjct: 73 LTPELLRLIEWAADYYLSPLGDVLRLALPVLLRQGYAKPSLPVLFYRLTERGRAALPDLK 132
Query: 134 NTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLY 193
+ RVL+ + G W + L A+ VS V+ GL+ +G+I+ I VV P+
Sbjct: 133 RAKKQARVLEALLQGGEWTRSALAHAAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPS 192
Query: 194 FSL-PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLIL 252
S L++ QQ VE ++ GFA L+ GVTGSGKTEVYLE +A VL GKQVL+L
Sbjct: 193 LSEWLALNQEQQAAVEAILSS-LGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVL 251
Query: 253 LPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPF 312
+PEI+LT +L RF+ RFG K A HS LS R ++WR+ RG V++G RSALFLPF
Sbjct: 252 VPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPF 311
Query: 313 KKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRR 372
K LGLI++DEEHD SYKQE+G Y+ARD++++R K E+ PVVL SATPS+ES N S +
Sbjct: 312 KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGK 371
Query: 373 YHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRG 432
Y + L+ R + LP +++IDMR + + G+SLSP +++ IR TL R EQ LLFLNRRG
Sbjct: 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRG 431
Query: 433 YAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACG 492
YAPL LC+ CG +C +C L H++ +L CH CG+ QSC CGS + A G
Sbjct: 432 YAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE-HLRAVG 490
Query: 493 FGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNF 552
G ERI EE+ FP ARI + SD G L+ L A GE DI+IGTQ++AKGH+F
Sbjct: 491 PGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDF 550
Query: 553 PRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQA 612
P ++LVGV+D D GL + D R+SERTFQLL QV GRAGR G +IQ Y P HP +QA
Sbjct: 551 PNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610
Query: 613 LVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNLKEHAP--RSSDI 670
L GD ++FYE E+ R+ + LPPF RLAAVI S ++ +A L+E D+
Sbjct: 611 LKRGDYEAFYEQELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDV 670
Query: 671 VVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALRVQFDIDPQNF 730
V GPA +PL + GRYR+++L+ ++LQ KRS +RV DIDPQ+F
Sbjct: 671 EVLGPAPAPLAKLAGRYRYQILLKSPSRADLQKLLRAWLAVLPKRSGKVRVSIDIDPQSF 730