RPSBLAST alignment for GI: 254780619 and conserved domain: COG1198

>gnl|CDD|31391 COG1198, PriA, Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]. Length = 730
 Score =  720 bits (1860), Expect = 0.0
 Identities = 319/720 (44%), Positives = 430/720 (59%), Gaps = 18/720 (2%)

Query: 26  GPYIYSVPSAMKVE-LGSIVRVPLRSRTVLGIVWYNSEEKYKIDSLKLRPIEYVFDC-PP 83
            P+ Y +P  ++ +  GS VRVP   R V+GIV   S E   +D  KL+ IE V D  P 
Sbjct: 14  RPFDYLIPEGLEPDQPGSRVRVPFGGRLVVGIVVELSSES-DVDGRKLKEIERVLDTEPV 72

Query: 84  LSRQMCEFVKWVADYTFSPMGLVARMVVSALSETEKMEEKIQ----------FTGIFPRI 133
           L+ ++   ++W ADY  SP+G V R+ +  L      +  +              +    
Sbjct: 73  LTPELLRLIEWAADYYLSPLGDVLRLALPVLLRQGYAKPSLPVLFYRLTERGRAALPDLK 132

Query: 134 NTVARLRVLDKIKDGKIWEKRDLIRASQVSSHVIDGLKAQGVIKQIFEVISPVVDSPNLY 193
               + RVL+ +  G  W +  L  A+ VS  V+ GL+ +G+I+ I      VV  P+  
Sbjct: 133 RAKKQARVLEALLQGGEWTRSALAHAAGVSLSVLKGLEKKGLIEIIELEPPLVVAPPDPS 192

Query: 194 FSL-PILDKNQQDVVEQVVPLCTKGFAVSLISGVTGSGKTEVYLEIVAAVLHLGKQVLIL 252
            S    L++ QQ  VE ++     GFA  L+ GVTGSGKTEVYLE +A VL  GKQVL+L
Sbjct: 193 LSEWLALNQEQQAAVEAILSS-LGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVL 251

Query: 253 LPEISLTSAILERFQKRFGVKPAEWHSSLSTSMREKIWRQVARGAISVIVGVRSALFLPF 312
           +PEI+LT  +L RF+ RFG K A  HS LS   R ++WR+  RG   V++G RSALFLPF
Sbjct: 252 VPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPF 311

Query: 313 KKLGLIVIDEEHDISYKQEEGILYNARDMSIVRGKIESFPVVLVSATPSIESRVNGISRR 372
           K LGLI++DEEHD SYKQE+G  Y+ARD++++R K E+ PVVL SATPS+ES  N  S +
Sbjct: 312 KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAESGK 371

Query: 373 YHSVHLSTRYRNSALPHLQVIDMRGQTIAQGKSLSPEMIDGIRHTLARNEQTLLFLNRRG 432
           Y  + L+ R   + LP +++IDMR + +  G+SLSP +++ IR TL R EQ LLFLNRRG
Sbjct: 372 YKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRG 431

Query: 433 YAPLTLCQVCGNRLKCLHCSCWLVEHRSKKKLYCHQCGHSAIYSQSCVVCGSSGKMIACG 492
           YAPL LC+ CG   +C +C   L  H++  +L CH CG+     QSC  CGS   + A G
Sbjct: 432 YAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSE-HLRAVG 490

Query: 493 FGIERIAEEVCEYFPLARISILSSDLEGGGGRLQLQLSAIAKGEIDIIIGTQLVAKGHNF 552
            G ERI EE+   FP ARI  + SD     G L+  L   A GE DI+IGTQ++AKGH+F
Sbjct: 491 PGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDF 550

Query: 553 PRMSLVGVVDGDLGLTNADLRSSERTFQLLSQVTGRAGRFGLKSLGLIQAYQPTHPVMQA 612
           P ++LVGV+D D GL + D R+SERTFQLL QV GRAGR G     +IQ Y P HP +QA
Sbjct: 551 PNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQTYNPDHPAIQA 610

Query: 613 LVSGDADSFYESEIRARESVNLPPFGRLAAVIISGTKYQEVENYAYNLKEHAP--RSSDI 670
           L  GD ++FYE E+  R+ + LPPF RLAAVI S    ++   +A  L+E        D+
Sbjct: 611 LKRGDYEAFYEQELAERKELGLPPFSRLAAVIASAKNEEKALEFARALRELLKEALPVDV 670

Query: 671 VVFGPAESPLFMVRGRYRFRLLIHGKRNSNLQGFFSQMYDNTIKRSNALRVQFDIDPQNF 730
            V GPA +PL  + GRYR+++L+     ++LQ           KRS  +RV  DIDPQ+F
Sbjct: 671 EVLGPAPAPLAKLAGRYRYQILLKSPSRADLQKLLRAWLAVLPKRSGKVRVSIDIDPQSF 730