HHsearch alignment for GI: 254780620 and conserved domain: COG1420
>COG1420 HrcA Transcriptional regulator of heat shock gene [Transcription].
Probab=94.80 E-value=0.098 Score=31.32 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEECC
Q ss_conf 9764568999999999985598633599999981--997899999999993259057315
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC--CISELFLFKILQPLVKAGIVETVR 58 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~~~~~s~~eIA~~~--~i~~~~l~kil~~L~~agli~S~r 58 (144)
T Consensus 2 ~~l~~Rq~~IL~aIV~~Yi~t~ePVGSk~L~e~~~l~~SsATIRN~Ma~LE~~GlI~k~H 61 (346)
T COG1420 2 GKLDERQRLILRAIVEDYLATGEPVGSKTLSEKYNLDLSSATIRNEMADLEKLGLIEKPH 61 (346)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 870079999999999999604991663999987388988462878999998777815765