HHsearch alignment for GI: 254780620 and conserved domain: PRK10163
>PRK10163 DNA-binding transcriptional repressor AllR; Provisional.
Probab=96.98 E-value=0.004 Score=39.54 Aligned_cols=63 Identities=19% Similarity=0.184 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCC
Q ss_conf 56899999999998559863359999998199789999999999325905731565454000237
Q gi|254780620|r 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69 (144)
Q Consensus 5 ~~~~yAi~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~ 69 (144)
T Consensus 22 qsl~Ral~IL~~la~~~-~~ltl~eia~~lglpksT~~RlL~tL~~~G~v~-~d~~~~~Y~lG~~ 84 (271)
T PRK10163 22 QALERGIAILQYLEKSG-GSSSVSDISLNLDLPLSTTFRLLKVLQAADFVY-QDSQLGWWHIGLG 84 (271)
T ss_pred CHHHHHHHHHHHHHHCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE-EECCCCCEECCHH
T ss_conf 29999999999997479-997999999997919999999999999689889-8489991764789