HHsearch alignment for GI: 254780620 and conserved domain: PRK10421
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional.
Probab=96.24 E-value=0.03 Score=34.33 Aligned_cols=65 Identities=22% Similarity=0.235 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHHH-HCCCCCCCH-HHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCH
Q ss_conf 456899999999998-559863359-9999981997899999999993259057315654540002372
Q gi|254780620|r 4 TKRTDYGIRVLMYCA-IHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70 (144)
Q Consensus 4 s~~~~yAi~~l~~La-~~~~~~~s~-~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~ 70 (144)
T Consensus 4 ~e~V~e~Lr~~I~~g~l~pG~~LP~E~eLae~~GVSRt~VREAL~~L~~eGlV~~~~g--~G~~V~~~~ 70 (253)
T PRK10421 4 SDEVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSRRG--GGTFIRWQH 70 (253)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEC--CEEEECCCC
T ss_conf 9999999999998199998595933999999979698999999999998898799757--824873476