HHsearch alignment for GI: 254780620 and conserved domain: PRK10434
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional.
Probab=93.81 E-value=0.27 Score=28.71 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=45.4
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCH
Q ss_conf 9999998559863359999998199789999999999325905731565454000237212609
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl 75 (144)
T Consensus 9 ~Il~~L~~~--g~v~v~eLa~~l~VS~~TIRRDL~~Le~~G~l~R~---hGGa~~~~~~~~~~~ 67 (256)
T PRK10434 9 AILEYLQKQ--GKCSVEELAQYFDTTGTTIRKDLVILEHAGTVIRT---YGGVVLNKEESDPPI 67 (256)
T ss_pred HHHHHHHHC--CCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---ECEEECCCCCCCCCH
T ss_conf 999999986--97999999998796998999849999878988999---473864777778788