HHsearch alignment for GI: 254780620 and conserved domain: PRK10857
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional.
Probab=100.00 E-value=2.6e-41 Score=264.99 Aligned_cols=137 Identities=26% Similarity=0.406 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHH
Q ss_conf 976456899999999998559-8633599999981997899999999993259057315654540002372126099999
Q gi|254780620|r 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79 (144)
Q Consensus 1 Mkis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~ 79 (144)
T Consensus 1 MkLS~kt~YAlraL~~LA~~~~~~~vsi~eIAe~~~Is~~~LekIl~~L~kaGlV~S~RG~~GGY~Lar~p~~Itl~dIi 80 (164)
T PRK10857 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVI 80 (164)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCHHHCCHHHHH
T ss_conf 97873887999999999818899809499999887919999999999998678506326888880336998989999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHH
Q ss_conf 997187631114688778887656644799999999999999841799999915898999
Q gi|254780620|r 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139 (144)
Q Consensus 80 ~aie~~~~~~~C~~~~~~~C~~~~~c~~~~~~~~~~~~~~~~L~~~TL~dl~~~~~~~~~ 139 (144)
T Consensus 81 ~aiEG~i~~~~C~~~~--~C~~~~~C~t~~~W~~l~~ai~~~Ld~iTLaDLv~~~~~l~~ 138 (164)
T PRK10857 81 SAVDESVDATRCQGKG--GCQGGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDV 138 (164)
T ss_pred HHHCCCCCCCCCCCCC--CCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHH
T ss_conf 9965887640689999--989989667779999999999999806919999768778899