HHsearch alignment for GI: 254780620 and conserved domain: PRK11534
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional.
Probab=95.61 E-value=0.046 Score=33.25 Aligned_cols=63 Identities=22% Similarity=0.301 Sum_probs=47.2
Q ss_pred HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH---HHCC
Q ss_conf 55986335999999819978999999999932590573156545400023721260999999---9718
Q gi|254780620|r 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK---ATEE 84 (144)
Q Consensus 19 ~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~---aie~ 84 (144)
T Consensus 25 l~PG~~L~e~~Lae~lgVSRtPVREAL~rL~~eGLV~~~p~r--G~~V~-~~s~~~i~ei~~~R~~LE~ 90 (224)
T PRK11534 25 FQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQK--GYRVA-SMSEQELLDIFDARANMEA 90 (224)
T ss_pred CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EEEEE-ECCCHHHHHHHHHHHHHHH
T ss_conf 899395589999999798858999999999987998874797--36982-2750109999999999999