HHsearch alignment for GI: 254780620 and conserved domain: PRK11534

>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional.
Probab=95.61  E-value=0.046  Score=33.25  Aligned_cols=63  Identities=22%  Similarity=0.301  Sum_probs=47.2

Q ss_pred             HCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH---HHCC
Q ss_conf             55986335999999819978999999999932590573156545400023721260999999---9718
Q gi|254780620|r   19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK---ATEE   84 (144)
Q Consensus        19 ~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~---aie~   84 (144)
T Consensus        25 l~PG~~L~e~~Lae~lgVSRtPVREAL~rL~~eGLV~~~p~r--G~~V~-~~s~~~i~ei~~~R~~LE~   90 (224)
T PRK11534         25 FQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTVVNQK--GYRVA-SMSEQELLDIFDARANMEA   90 (224)
T ss_pred             CCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC--EEEEE-ECCCHHHHHHHHHHHHHHH
T ss_conf             899395589999999798858999999999987998874797--36982-2750109999999999999