HHsearch alignment for GI: 254780620 and conserved domain: TIGR03337
>TIGR03337 phnR transcriptional regulator protein. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii.
Probab=94.18 E-value=0.11 Score=31.13 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=42.7
Q ss_pred CCCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHH------CCHHHHHHHH
Q ss_conf 9863-359999998199789999999999325905731565454000237212------6099999997
Q gi|254780620|r 21 NDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ------ITILDVVKAT 82 (144)
Q Consensus 21 ~~~~-~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~------Itl~dI~~ai 82 (144)
T Consensus 21 ~G~~LPsE~eLa~~~~VSR~TvR~Al~~L~~eGli~r~~G~-GTfV-~~~~~~~~~~~~~~f~~~~~~~ 87 (231)
T TIGR03337 21 PGDKLPSERDLGERFNTTRVTIREALQQLEAEGLIYREDRR-GWFV-SPPRLRYNPTRTQNFHEYVREQ 87 (231)
T ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCC-EEEE-CCCCCCCCCHHCCCHHHHHHHC
T ss_conf 95978589999999797999999999999987996996686-6798-8885444800013448999965