HHsearch alignment for GI: 254780620 and conserved domain: pfam01047
>pfam01047 MarR MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.
Probab=95.92 E-value=0.028 Score=34.55 Aligned_cols=49 Identities=24% Similarity=0.383 Sum_probs=40.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
Q ss_conf 999999985598633599999981997899999999993259057315654
Q gi|254780620|r 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61 (144)
Q Consensus 11 i~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~ 61 (144)
T Consensus 6 ~~vL~~l~~~~--~~s~~~la~~~~~~~~~vs~~i~~Le~~glv~R~~~~~ 54 (59)
T pfam01047 6 FHILRILYEHG--PLTVSELAEKLGVDRSTVTRVLDRLEKKGLIERSRSPE 54 (59)
T ss_pred HHHHHHHHHCC--CCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCC
T ss_conf 99999999469--92999999998858654999999998897988627999