HHsearch alignment for GI: 254780620 and conserved domain: pfam02082
>pfam02082 Rrf2 Transcriptional regulator. This family is related to pfam001022 and other transcription regulation families (personal obs: Yeats C).
Probab=99.92 E-value=3.9e-25 Score=169.49 Aligned_cols=81 Identities=48% Similarity=0.775 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHHHCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEECCCHHHCCHHHHHH
Q ss_conf 76456899999999998559-86335999999819978999999999932590573156545400023721260999999
Q gi|254780620|r 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80 (144)
Q Consensus 2 kis~~~~yAi~~l~~La~~~-~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~Lak~~~~Itl~dI~~ 80 (144)
T Consensus 1 kls~~~~yAl~~l~~La~~~~~~~~s~~~iA~~~~i~~~~l~kil~~L~~~gli~s~rG~~GGy~L~k~~~~Itl~dIi~ 80 (82)
T pfam02082 1 KLSTKTDYALHALLYLALHPGEGPVTSEEIAERQNISPVYLRKILAKLRKAGLVKSVRGPGGGYRLARPPEEITLLDVVR 80 (82)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCHHHCCHHHHHH
T ss_conf 98819999999999998189998495999998789099999999998102798256589998811348989895999998
Q ss_pred HH
Q ss_conf 97
Q gi|254780620|r 81 AT 82 (144)
Q Consensus 81 ai 82 (144)
T Consensus 81 ai 82 (82)
T pfam02082 81 AV 82 (82)
T ss_pred HC
T ss_conf 79