HHsearch alignment for GI: 254780620 and conserved domain: pfam08220

>pfam08220 HTH_DeoR DeoR-like helix-turn-helix domain.
Probab=90.33  E-value=0.93  Score=25.55  Aligned_cols=50  Identities=20%  Similarity=0.258  Sum_probs=39.8

Q ss_pred             HHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEECCCCCCCCEEC
Q ss_conf             9999985598633599999981997899999999993259057315654540002
Q gi|254780620|r   13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC   67 (144)
Q Consensus        13 ~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~agli~S~rG~~GGy~La   67 (144)
T Consensus         5 Il~~l~~--~~~v~i~~La~~f~VS~~TiRRDl~~L~~~g~i~R~---~GGA~~~   54 (57)
T pfam08220         5 ILELLKQ--QGTLSVEELAELLGVSEMTIRRDLNELEEQGLLTRT---HGGAVSN   54 (57)
T ss_pred             HHHHHHH--CCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEE---ECCEECC
T ss_conf             9999998--697979999999895999999969999988998997---4957758