HHsearch alignment for GI: 254780620 and conserved domain: pfam08279

>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.89  E-value=0.0037  Score=39.76  Aligned_cols=51  Identities=24%  Similarity=0.272  Sum_probs=41.9

Q ss_pred             HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-CEEECCCCCCCCE
Q ss_conf             99999985598633599999981997899999999993259-0573156545400
Q gi|254780620|r   12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVR   65 (144)
Q Consensus        12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ag-li~S~rG~~GGy~   65 (144)
T Consensus         4 ~il~~L~~-~~~~vt~~~La~~l~VSr~TV~rdi~~L~~~G~~I~s~~g~--GY~   55 (55)
T pfam08279         4 QILELLLQ-AREPISGQELAEKLGVSRRTIRRDIKALEALGVPIESEPGR--GYR   55 (55)
T ss_pred             HHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCC--CCC
T ss_conf             99999997-69991899999996988999999999999889978846899--998