HHsearch alignment for GI: 254780620 and conserved domain: pfam08279
>pfam08279 HTH_11 HTH domain. This family includes helix-turn-helix domains in a wide variety of proteins.
Probab=96.89 E-value=0.0037 Score=39.76 Aligned_cols=51 Identities=24% Similarity=0.272 Sum_probs=41.9
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC-CEEECCCCCCCCE
Q ss_conf 99999985598633599999981997899999999993259-0573156545400
Q gi|254780620|r 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG-IVETVRGRRGGVR 65 (144)
Q Consensus 12 ~~l~~La~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~ag-li~S~rG~~GGy~ 65 (144)
T Consensus 4 ~il~~L~~-~~~~vt~~~La~~l~VSr~TV~rdi~~L~~~G~~I~s~~g~--GY~ 55 (55)
T pfam08279 4 QILELLLQ-AREPISGQELAEKLGVSRRTIRRDIKALEALGVPIESEPGR--GYR 55 (55)
T ss_pred HHHHHHHH-CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCCEEECCCC--CCC
T ss_conf 99999997-69991899999996988999999999999889978846899--998