BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254780620|ref|YP_003065033.1| iron-responsive
transcriptional regulator [Candidatus Liberibacter asiaticus str.
psy62]
(144 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
>gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040297|gb|ACT57093.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
asiaticus str. psy62]
Length = 144
Score = 152 bits (384), Expect = 2e-35, Method: Composition-based stats.
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR
Sbjct: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD
Sbjct: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VLTQYSIECLVRNRSSIKKIFNAG
Sbjct: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
>gi|83590489|ref|YP_430498.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83573403|gb|ABC19955.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica
ATCC 39073]
Length = 150
Score = 148 bits (373), Expect = 3e-34, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R +YG+R + A H + P I +AE ISE +L +++ L KAG+V+++RG
Sbjct: 1 MKLSTRGEYGLRAMFDLAQHYGEGPIPIKSVAERQDISEHYLEQLIAVLRKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L R ++IT+ D+++ E EC + C +C + K ++
Sbjct: 61 AQGGYVLSREPEEITVGDIIRVLEGPIAPVECLNTAEGESCERAETCVTRGIWEKVRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
DVL +++ +V + +++
Sbjct: 121 SDVLDSFTLADMVAKANQMRQ 141
>gi|260438134|ref|ZP_05791950.1| iron-sulfur cluster assembly transcription factor IscR
[Butyrivibrio crossotus DSM 2876]
gi|292809459|gb|EFF68664.1| iron-sulfur cluster assembly transcription factor IscR
[Butyrivibrio crossotus DSM 2876]
Length = 144
Score = 147 bits (371), Expect = 6e-34, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A+++ D P I +IA ISE +L +I+ L AG V ++RG
Sbjct: 1 MKVSTKGRYALRLMIDIAVNSNDKPVSIKEIARRQGISEKYLEQIISILNSAGFVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + T+ +++ TE S C + + C V +C V R+ +A
Sbjct: 61 AQGGYVLRKEPSEYTVGMILRLTEGSLAPVACIEDNVVQCDRVENCATIEVWRRLNDAIN 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
V+ ++ LV +++ K+
Sbjct: 121 GVVDNITLADLVEWQNNNKE 140
>gi|299065123|emb|CBJ36287.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
CMR15]
Length = 192
Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 87/144 (60%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR
Sbjct: 21 MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 80
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I I DVV+ATE F + ECF + C + CGL VL AL A+F+
Sbjct: 81 AGGITLGRPAAEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 140
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VL Y+++ L+ +++ ++ G
Sbjct: 141 VLDTYTLQDLIERPAALNRVLAEG 164
>gi|300689754|ref|YP_003750749.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
PSI07]
gi|299076814|emb|CBJ49424.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
PSI07]
Length = 172
Score = 145 bits (367), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 86/144 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR
Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQQLGQDGFLHTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I I DVV+ATE F + ECF C + CGL VL AL A+F+
Sbjct: 61 AGGIALGRPAAEINIGDVVRATEPDFSLVECFHGDDNHCVITRVCGLRGVLTAALRAYFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VL Y+++ L+ +++ ++ G
Sbjct: 121 VLDAYTLQDLIDRPAALNRVLAEG 144
>gi|17548114|ref|NP_521516.1| hypothetical protein RSc3397 [Ralstonia solanacearum GMI1000]
gi|17430421|emb|CAD16894.1| putative of unknown function upf0074; transcription regulator
protein [Ralstonia solanacearum GMI1000]
Length = 172
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 87/144 (60%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR
Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDVLVTIQQIADAFGIPKNHLIKIVQGLGQNGFLHTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I I DVV+ATE F + ECF + C + CGL VL AL A+F+
Sbjct: 61 AGGITLGRPAVEINIGDVVRATEPDFSLVECFHVNDNHCIITRVCGLRGVLAAALQAYFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VL Y+++ L+ +++ ++ G
Sbjct: 121 VLDTYTLQDLIERPAALNRVLAEG 144
>gi|121535959|ref|ZP_01667753.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
carboxydivorans Nor1]
gi|121305451|gb|EAX46399.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
carboxydivorans Nor1]
Length = 148
Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + A+H P + +A+ ISE +L +++ L KAG V++VRG
Sbjct: 1 MKLSTKGRYGVAAMYDLALHYGQGPISLKNVAKRQGISEHYLEQLMGILRKAGYVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +IT+ D+++ E +C + C C V K ++
Sbjct: 61 SQGGYTLTKDPAEITVGDIIRIMEGPIAPVDCLLTDNNSCKRADICVTRGVWAKVRDSIS 120
Query: 120 DVLTQYSIECLVRNRSS 136
VL S+ L R
Sbjct: 121 QVLDSISLADLCREEKD 137
>gi|300702436|ref|YP_003744036.1| hth-type transcriptional regulator nsrr [Ralstonia solanacearum
CFBP2957]
gi|299070097|emb|CBJ41384.1| HTH-type transcriptional regulator nsrR [Ralstonia solanacearum
CFBP2957]
Length = 170
Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/144 (43%), Positives = 85/144 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR
Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA I I DVV+ATE F + ECF C + CGL VL AL A+F+
Sbjct: 61 AGGITLGRPAADINIGDVVRATEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VL Y+++ L+ +++ ++ G
Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144
>gi|83746141|ref|ZP_00943195.1| AAU3 protein precursor [Ralstonia solanacearum UW551]
gi|83727107|gb|EAP74231.1| AAU3 protein precursor [Ralstonia solanacearum UW551]
Length = 189
Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 85/144 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR
Sbjct: 18 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 77
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA I I DVV++TE F + ECF C + CGL VL AL A+F+
Sbjct: 78 AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 137
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VL Y+++ L+ +++ ++ G
Sbjct: 138 VLDTYTLQDLIDKPAALNRVLAEG 161
>gi|207722055|ref|YP_002252493.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
gi|207741831|ref|YP_002258223.1| protein of unknown function upf0074 [Ralstonia solanacearum
IPO1609]
gi|206587229|emb|CAQ17813.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
gi|206593215|emb|CAQ60142.1| protein of unknown function upf0074 [Ralstonia solanacearum
IPO1609]
Length = 172
Score = 144 bits (364), Expect = 4e-33, Method: Composition-based stats.
Identities = 61/144 (42%), Positives = 85/144 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I QIA+A I + L KI+Q L + G + TVRGR
Sbjct: 1 MRLTDYTDYSLRTLIYVAVHPDTLVTIQQIADAFGIPKNHLIKIVQGLGQDGFLHTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA I I DVV++TE F + ECF C + CGL VL AL A+F+
Sbjct: 61 AGGITLGRPAADINIGDVVRSTEPDFSLVECFHGADNHCIITRVCGLRGVLAAALQAYFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
VL Y+++ L+ +++ ++ G
Sbjct: 121 VLDTYTLQDLIDKPAALNRVLAEG 144
>gi|239626143|ref|ZP_04669174.1| transcriptional regulator [Clostridiales bacterium 1_7_47_FAA]
gi|239520373|gb|EEQ60239.1| transcriptional regulator [Clostridiales bacterium 1_7_47FAA]
Length = 144
Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R ++ AIH D P +I IA IS +L +I+ L +AG V ++RG
Sbjct: 1 MLVSTKGRYALRTMVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGYVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L +PA + T+ +++ TE S +C + + C C + R+ A
Sbjct: 61 NQGGYYLAKPAAEYTVGMILRVTEGSLAPVDCLSGGENPCTRQMDCVTLRLWRELDEAIS 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
V+ +Y++E LV+ R ++K
Sbjct: 121 GVVDRYTLEDLVQWRRNMKD 140
>gi|89895173|ref|YP_518660.1| hypothetical protein DSY2427 [Desulfitobacterium hafniense Y51]
gi|219669600|ref|YP_002460035.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfitobacterium hafniense DCB-2]
gi|89334621|dbj|BAE84216.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539860|gb|ACL21599.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
hafniense DCB-2]
Length = 146
Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats.
Identities = 42/146 (28%), Positives = 76/146 (52%), Gaps = 2/146 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ ++ A+++ P + IA+ +SE +L +++ L KAG+V+++RG
Sbjct: 1 MKLSTKGRYGLTAMVDLALNSGEGPISLKSIADRQGLSEHYLEQLISGLRKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
+GG L + A++I I D+++ E EC A+ C C S+ K +
Sbjct: 61 AQGGYVLGKKAEKIRIGDIIRVLEGPIAPVECEANGDPECCQKSDYCVTRSIREKVRDPI 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
DVL S+ LVR+ ++ I + G
Sbjct: 121 EDVLDSISLADLVRDPQTMCTIADPG 146
>gi|241664864|ref|YP_002983224.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
12D]
gi|309780331|ref|ZP_07675082.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA]
gi|240866891|gb|ACS64552.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
12D]
gi|308921034|gb|EFP66680.1| transcriptional repressor NsrR [Ralstonia sp. 5_7_47FAA]
Length = 159
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 84/142 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I +IA+A I + L KI+Q L + G + TVRGR
Sbjct: 1 MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I + DVV+ATE F + ECF C + CGL VL AL A+F+
Sbjct: 61 AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+++ LV +++ +
Sbjct: 121 VLDGYTLQDLVDKPNAVSRALG 142
>gi|332981928|ref|YP_004463369.1| BadM/Rrf2 family transcriptional regulator [Mahella australiensis
50-1 BON]
gi|332699606|gb|AEE96547.1| transcriptional regulator, BadM/Rrf2 family [Mahella australiensis
50-1 BON]
Length = 149
Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ ++ A++ + P + +AE ISE +L +++ L KAG+V++VRG
Sbjct: 1 MKLSTKGRYGLTAMLDLALNYGEEPVALKNVAERQGISEPYLEQLIAGLRKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L P D+IT+ DV++ E +C + + C C + K ++
Sbjct: 61 AQGGYILAYPPDKITVGDVMRVLEGPLAPVDCVIENEPVSCEKADHCVTRIIWEKIRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
V+ +++ +V + I
Sbjct: 121 NQVVDSITLQDMVDEYNRIN 140
>gi|225388530|ref|ZP_03758254.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme
DSM 15981]
gi|225045409|gb|EEG55655.1| hypothetical protein CLOSTASPAR_02266 [Clostridium asparagiforme
DSM 15981]
Length = 144
Score = 141 bits (357), Expect = 2e-32, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R ++ A+H + P +I IA+ IS +L +I+ L +AG V ++RG
Sbjct: 1 MLISTKGRYALRTMVDLALHADGEPVKIKDIAKRQEISGKYLEQIISILSRAGYVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RPA T+ +++ TE S +C C C + ++ A
Sbjct: 61 NQGGYYLARPAKDYTVGMILRVTEGSLAPVDCLTGDDNPCARQQECVTLKLWKELDGAIR 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
DV+ Y+++ LV+ + +++
Sbjct: 121 DVVDGYTLDDLVQWQRAMQD 140
>gi|312135466|ref|YP_004002804.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
owensensis OL]
gi|311775517|gb|ADQ05004.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
owensensis OL]
Length = 150
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG
Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +ITI ++++A E S +EC K+DCP C V K A
Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIE 122
Query: 120 DVLTQYSIECLVRNRSSI 137
+V+ +++ LV + +
Sbjct: 123 NVVDSVTLQDLVDDYKKM 140
>gi|296133417|ref|YP_003640664.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
gi|296031995|gb|ADG82763.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR]
Length = 149
Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ + A H + P + IAE +SE +L +++ L KAG+V++VRG
Sbjct: 1 MKVSTKGHYGVQAMFDLAQHFGEGPVSLKSIAERQGLSEPYLEQLIAVLRKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L R I + D+++ E EC + + C C SV K +
Sbjct: 61 AQGGYILAREPRDIKVGDIIRVLEGPIAPVECVSQDDPEHCLKFDFCVTKSVWEKVKKSI 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+VL ++ ++++
Sbjct: 121 EEVLDSITLADMLKDAEE 138
>gi|146297253|ref|YP_001181024.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145410829|gb|ABP67833.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 150
Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG
Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIATLKKAGLVKSIRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +ITI ++++A E S AEC K+DCP C V K A
Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPAECIDDIEKVDCPRADFCVTKKVWEKVKKAIE 122
Query: 120 DVLTQYSIECLVRNRSSI 137
V+ +++ LV + +
Sbjct: 123 SVVDSITLQDLVDDYKKM 140
>gi|160878171|ref|YP_001557139.1| BadM/Rrf2 family transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160426837|gb|ABX40400.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
phytofermentans ISDg]
Length = 145
Score = 140 bits (354), Expect = 4e-32, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ AI+N I IA IS+ +L +I+ L +AG V++ RG
Sbjct: 1 MKISTKGRYALRLMLDLAINNTGEFITIKSIAGRQEISDKYLEQIITLLSRAGYVKSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + + T+ ++K E S C DC GSC V +K A
Sbjct: 61 AQGGYRLTKEPKEYTVGMILKLIEGSLAPVSCVEEEDNDCNRYGSCATLFVYQKINEAVN 120
Query: 120 DVLTQYSIECLVRNRSSI 137
+V+ ++E LV +
Sbjct: 121 NVVDNITLEDLVERHREL 138
>gi|187930672|ref|YP_001901159.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
12J]
gi|187727562|gb|ACD28727.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
12J]
Length = 159
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 83/142 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H D I +IA+A I + L KI+Q L + G + TVRGR
Sbjct: 1 MRLTDYTDYALRTLIYVAVHPDELVTIQRIADAFDIPKNHLIKIVQQLGQDGFLHTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I + DVV+ATE F + ECF C + CGL VL AL A+F+
Sbjct: 61 AGGITLGRPAAEINLGDVVRATEPDFRMVECFHGDDNHCVITRVCGLRGVLHAALRAYFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+++ L +++ +
Sbjct: 121 VLDGYTLQDLADKPNAVSRALG 142
>gi|312127257|ref|YP_003992131.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
hydrothermalis 108]
gi|311777276|gb|ADQ06762.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
hydrothermalis 108]
Length = 150
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG
Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +ITI ++++A E S +EC ++DCP C V K A
Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIE 122
Query: 120 DVLTQYSIECLVRNRSSI 137
+V+ +++ LV + +
Sbjct: 123 NVVDSVTLQDLVDDYKKM 140
>gi|312793908|ref|YP_004026831.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877395|ref|ZP_07737360.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
lactoaceticus 6A]
gi|311795869|gb|EFR12233.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
lactoaceticus 6A]
gi|312181048|gb|ADQ41218.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 150
Score = 140 bits (354), Expect = 5e-32, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG
Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKNIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +ITI ++++A E S +EC ++DCP C V K A
Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIERVDCPRAEFCVTRKVWEKVKEAIE 122
Query: 120 DVLTQYSIECLVRNRSSI 137
+V+ +++ LV + +
Sbjct: 123 NVVDSVTLQDLVDDYKKM 140
>gi|255505326|ref|ZP_05345447.3| iron-sulfur cluster assembly transcription factor IscR [Bryantella
formatexigens DSM 14469]
gi|255268340|gb|EET61545.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
formatexigens DSM 14469]
Length = 153
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 68/138 (49%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A+ P R+ IA+ IS ++ +I+ L KAG ++++RG
Sbjct: 10 MKISTKGRYALRIMLDIAVMGGSEPVRVKDIAKRQEISVKYMEQIVTILSKAGYLKSIRG 69
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R T+ +++ TE S C CP C + R+ A
Sbjct: 70 PQGGYRLARQPKDYTVGMILRLTEGSLAPVACLEDEPNLCPRQEQCVTLRLWRELDEAIR 129
Query: 120 DVLTQYSIECLVRNRSSI 137
V+ +Y++E L + + +
Sbjct: 130 GVVDKYTLEDLAQWQQEM 147
>gi|300115490|ref|YP_003762065.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
C-113]
gi|299541427|gb|ADJ29744.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
C-113]
Length = 153
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 82/141 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y ++N IS+IA++ IS L K++ L G ++T RG+
Sbjct: 1 MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + + I I VV+ TE F +AECF + C + C L +V +A AF
Sbjct: 61 GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCQLKNVFWEARCAFIA 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL +Y++ +V+N+S ++
Sbjct: 121 VLDRYTLADIVKNKSQLRSSL 141
>gi|292490559|ref|YP_003525998.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus
Nc4]
gi|291579154|gb|ADE13611.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus
Nc4]
Length = 153
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 83/142 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y ++H++ IS+IA + IS L K++ L G ++T RG+
Sbjct: 1 MQLTQYTDYSLRVLIYLSLHDEQLATISEIASSYNISRNHLGKVVHNLANLGYIDTTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + ++I + +V+ TE F VAECF + C + C L V +A AF
Sbjct: 61 GGGMRLSQAPEKINLGRIVQQTEGRFDVAECFNTTHNTCSISSCCQLKDVFWEARCAFLA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++ +++N++ ++
Sbjct: 121 VLNRYTLADVIKNKNELRSSLR 142
>gi|222529700|ref|YP_002573582.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
bescii DSM 6725]
gi|312622077|ref|YP_004023690.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
kronotskyensis 2002]
gi|222456547|gb|ACM60809.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
bescii DSM 6725]
gi|312202544|gb|ADQ45871.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 150
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 73/138 (52%), Gaps = 2/138 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG
Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +ITI ++++A E S +EC ++DCP C V K A
Sbjct: 63 QGGYMLSRDPSKITIGEILRALEGSLSPSECIDDLDRVDCPRAEFCVTRKVWEKVKEAIE 122
Query: 120 DVLTQYSIECLVRNRSSI 137
V+ +++ LV + +
Sbjct: 123 KVVDSVTLQDLVDDYKKM 140
>gi|303241873|ref|ZP_07328367.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
cellulolyticus CD2]
gi|302590547|gb|EFL60301.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
cellulolyticus CD2]
Length = 149
Score = 140 bits (353), Expect = 7e-32, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ A+H + P + IAE ISE +L ++ L KAG V++VRG
Sbjct: 1 MKLSTKGRYGVKSMLDLALHNGEGPVALKSIAERQDISENYLEQLFATLRKAGHVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + ITI +++A E S EC I C C + K +
Sbjct: 61 SQGGYILANSPENITIGAILRALEGSLAPVECVVEDDPIKCTKSDQCVTRIIWEKIRDKV 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+V+ ++ L+ + +
Sbjct: 121 NEVVDSITLYDLIEEYTKNNE 141
>gi|89096423|ref|ZP_01169316.1| YhdE [Bacillus sp. NRRL B-14911]
gi|89089277|gb|EAR68385.1| YhdE [Bacillus sp. NRRL B-14911]
Length = 158
Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats.
Identities = 63/142 (44%), Positives = 87/142 (61%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +DY IRVL+Y A H ND I +IAEA IS+ L KI+ L K G + TVRG
Sbjct: 1 MRLTTYSDYSIRVLIYLASHQNDKLVNIKEIAEAYDISKNHLMKIIYNLGKMGYIRTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG +L + +I I ++V+ TEE F++ ECF HK C + C L +L AL +F
Sbjct: 61 RNGGFKLAKLPAEINIGEIVRKTEEDFYLVECF-DHKNKCVITPVCSLKHILNHALESFL 119
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL QY++E +V N++ +K+ F
Sbjct: 120 KVLDQYTLEDIVENKAMLKEYF 141
>gi|125973237|ref|YP_001037147.1| BadM/Rrf2 family transcriptional regulator [Clostridium
thermocellum ATCC 27405]
gi|256003715|ref|ZP_05428703.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|281417437|ref|ZP_06248457.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|125713462|gb|ABN51954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum ATCC 27405]
gi|255992276|gb|EEU02370.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|281408839|gb|EFB39097.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|316940532|gb|ADU74566.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 1313]
Length = 143
Score = 140 bits (352), Expect = 9e-32, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ A+H + P + IAE + E +L ++ L KAG + +VRG
Sbjct: 1 MWLSTKGRYGLKAMLDLALHNGEGPVALKSIAERQNLPENYLEQLFATLKKAGHITSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + D ITI ++++ E S +C C +C V K ++
Sbjct: 61 AQGGYLLSKDPDSITIGSILRSLEGSLAPVDCVVEDSSPKCDRFDNCVTKIVWEKIRDSV 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+ + ++ LV+ + +
Sbjct: 121 NEAVDSITLGDLVKESNKNSAL 142
>gi|315121821|ref|YP_004062310.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495223|gb|ADR51822.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 144
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 114/143 (79%), Positives = 128/143 (89%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLTKRTDYGIRVLMYCA++ D PNRI+QIAEACCISE FLFKILQPL KAGI+ETVRGR
Sbjct: 1 MHLTKRTDYGIRVLMYCALNQDCPNRIAQIAEACCISEFFLFKILQPLGKAGIIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRLCRPADQIT+LDVVKATEESF++AECF HKI CPLVG+C L+SV +KALNAFFD
Sbjct: 61 NGGVRLCRPADQITVLDVVKATEESFYMAECFGKHKISCPLVGNCNLSSVFQKALNAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL +YSIECLV++RS KK+ A
Sbjct: 121 VLKRYSIECLVQDRSLYKKLLKA 143
>gi|218134234|ref|ZP_03463038.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC
43243]
gi|217991609|gb|EEC57615.1| hypothetical protein BACPEC_02124 [Bacteroides pectinophilus ATCC
43243]
Length = 144
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R+++ A++N P R+ I++ IS+ +L +I+ L KAG V ++RG
Sbjct: 1 MKISTRGRYALRMMLDLAVNNNGEPIRLKDISKRQGISDKYLEQIISILNKAGFVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + T+ +++ TE S C DC C + K +A
Sbjct: 61 PQGGYMLNREPKEYTVGMILRLTEGSLAPVACLDYEPNDCERRNECVTLILWEKLNDAIK 120
Query: 120 DVLTQYSIECLVR 132
V+ +++ LV+
Sbjct: 121 SVVDNITLQDLVQ 133
>gi|77166414|ref|YP_344939.1| hypothetical protein Noc_2967 [Nitrosococcus oceani ATCC 19707]
gi|254435367|ref|ZP_05048874.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27]
gi|76884728|gb|ABA59409.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
ATCC 19707]
gi|207088478|gb|EDZ65750.1| Transcriptional regulator superfamily [Nitrosococcus oceani AFC27]
Length = 153
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 82/141 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y ++N IS+IA++ IS L K++ L G ++T RG+
Sbjct: 1 MQLTQYTDYSLRVLIYLDLYNKELATISEIAKSYNISRNHLGKVVHNLANLGYIDTTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + + I I VV+ TE F +AECF + C + C L +V +A AF
Sbjct: 61 GGGMRLSQAPENINIGQVVRQTEGRFDLAECFNAAHNTCSISSCCELKNVFWEARCAFIA 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL +Y++ +V+N+S ++
Sbjct: 121 VLDRYTLADIVKNKSQLRSSL 141
>gi|92118952|ref|YP_578681.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter
hamburgensis X14]
gi|91801846|gb|ABE64221.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
hamburgensis X14]
Length = 150
Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 82/142 (57%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +RVLMY A+ +D + I++IA + ISE L K++ L AG +ETVRGR
Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDISEAHLMKVVHQLGVAGYIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +P + I++ +V++ TE + CF C + SC L L +A AF +
Sbjct: 61 GGGLRLAKPVEAISLAEVIRTTEPDMAIVTCFKPVNAPCMINPSCVLKRALERAREAFME 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y++ LV R+ + +
Sbjct: 121 VLEGYTLADLVAPRARLASLLG 142
>gi|83312129|ref|YP_422393.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82946970|dbj|BAE51834.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 157
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A H++ P ++ IAE IS +L ++ L K G+V++VRG
Sbjct: 1 MKLSTKGRYAVMAMVDLASHSEGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R Q I D++ A +E C C G C + + N
Sbjct: 61 PGGGYLLSRIPQQTRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCLTHDLWEELGNQI 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L+ S+ + R
Sbjct: 121 YLYLSSVSLADVCERR 136
>gi|52079417|ref|YP_078208.1| hypothetical protein BL02858 [Bacillus licheniformis ATCC 14580]
gi|52784777|ref|YP_090606.1| YhdE [Bacillus licheniformis ATCC 14580]
gi|319646802|ref|ZP_08001031.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2]
gi|81386129|sp|Q65M01|NSRR_BACLD RecName: Full=HTH-type transcriptional regulator nsrR
gi|52002628|gb|AAU22570.1| conserved hypothetical protein YhdE [Bacillus licheniformis ATCC
14580]
gi|52347279|gb|AAU39913.1| YhdE [Bacillus licheniformis ATCC 14580]
gi|317391390|gb|EFV72188.1| HTH-type transcriptional regulator nsrR [Bacillus sp. BT1B_CT2]
Length = 143
Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats.
Identities = 59/143 (41%), Positives = 90/143 (62%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A +++ I IA++ IS+ L K++ L K G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLATKNSNELVNIKDIADSYSISKNHLMKVIYELGKLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + + I I +V++ TE+ F + ECF K C L CGL VL KAL+A+
Sbjct: 61 RNGGIRLGKAPELINIGEVIRHTEDDFNLVECFNGEKNHCILSPICGLKHVLNKALSAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
DVL QY+++ ++ N+ I+K+ +
Sbjct: 121 DVLDQYTLQDIIMNQDHIRKLLS 143
>gi|266623212|ref|ZP_06116147.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
hathewayi DSM 13479]
gi|288865011|gb|EFC97309.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
hathewayi DSM 13479]
Length = 144
Score = 139 bits (350), Expect = 2e-31, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 68/137 (49%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + Y +R+++ A+H +I+Q+AE IS+ +L +I+ L +AG V+++RG
Sbjct: 1 MKISTKGRYALRMMLEFALHPGECTKINQVAERQQISDKYLEQIVTILSRAGYVKSMRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L + T+ +++ TE S C C G C +V ++ A
Sbjct: 61 QGGYYLTKEPSDYTVGMILRLTEGSLAPVACMEDELNQCIRSGHCATLTVWKQLDQAING 120
Query: 121 VLTQYSIECLVRNRSSI 137
V+ ++ LV + +
Sbjct: 121 VVDNITLADLVEEQKKL 137
>gi|91790549|ref|YP_551501.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
gi|91699774|gb|ABE46603.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
Length = 156
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 55/141 (39%), Positives = 79/141 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A I++IA A +SE L K++ L K G + VRG+
Sbjct: 1 MKLTAFTDYSLRVLIYLAAQPQQRATIAEIATAFDVSENHLSKVVHCLGKNGWLANVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L P + I + VV+ TE VAECF+ C + C L VL +A+ AF
Sbjct: 61 GGGLELAMPPELIGVGAVVRQTEGVAVVAECFSDKGNHCSITRVCRLRGVLGEAVEAFHA 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL +Y++ LV+NR S+ ++
Sbjct: 121 VLDRYTLADLVQNRQSLARVL 141
>gi|295702551|ref|YP_003595626.1| nitric oxide sensitive transcriptional regulator [Bacillus
megaterium DSM 319]
gi|294800210|gb|ADF37276.1| transcriptional regulator, nitric oxide sensitive [Bacillus
megaterium DSM 319]
Length = 149
Score = 138 bits (349), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY +RVL+Y + ++ I +IAEA IS+ L KI+ L K G++ET+RG
Sbjct: 1 MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I VV+ TEE F + ECF C + C L +VL +A+ AF
Sbjct: 61 RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDREGNFCVISPVCKLKNVLHEAMQAFI 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL QY++E L++N+ + +
Sbjct: 121 KVLDQYTLEDLIQNKDELNLLL 142
>gi|302392704|ref|YP_003828524.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium
arabaticum DSM 5501]
gi|302204781|gb|ADL13459.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium
arabaticum DSM 5501]
Length = 149
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R + A+ + P + +IAE IS+ +L +++ L +VE+VRG
Sbjct: 1 MQLSTKGRYGVRAMFDLALQQKEGPIPLKEIAERQKISDNYLEQLIAVLKNNRLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +P ++I+I D+++A E +A+C C +C + + +K
Sbjct: 61 AYGGYLLAKPPEEISIGDIIRALEGPIDLADCVGG--RSCEFEDNCIVELIWQKVKKEID 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D+L ++E L++ ++ ++
Sbjct: 119 DILDSITLEDLLQEAANAQQ 138
>gi|171915867|ref|ZP_02931337.1| HTH-type transcriptional regulator [Verrucomicrobium spinosum DSM
4136]
Length = 160
Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 78/143 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ +DY +RVLMY A +S++ +A +S L KI+ L K G + RGR
Sbjct: 1 MELSRFSDYSLRVLMYAAAREHEKVTLSELTQAYRVSHHHLVKIVHFLGKQGYLSNRRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R I + DV++ TE F + ECF C L +C L V R+A +AF D
Sbjct: 61 SGGIRLGRAPRDIKVGDVIRHTETHFNLVECFDPANDLCKLSPTCRLRGVFREARDAFLD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL Y++E LV + + ++ +
Sbjct: 121 VLDHYTLEDLVVDGKPLLRLLSP 143
>gi|154498777|ref|ZP_02037155.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC
29799]
gi|150272167|gb|EDM99371.1| hypothetical protein BACCAP_02768 [Bacteroides capillosus ATCC
29799]
Length = 144
Score = 138 bits (348), Expect = 3e-31, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ AI D + +AE IS+ +L +I+ L + G+V +VRG
Sbjct: 1 MKISTKGRYALRLMLDLAIQPGDSAVPLRDVAERQEISDKYLEQIVTQLARGGLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ++ T+ ++++ E + C + C C V ++ +A
Sbjct: 61 AGGGYLLTRTPEEYTVGEILRQLEGNLAPVSCVSGG-SCCGRADRCVTLEVWQQIQDAVD 119
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++ LV+
Sbjct: 120 GVVDNITLADLVKRYHE 136
>gi|295676448|ref|YP_003604972.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1002]
gi|295436291|gb|ADG15461.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1002]
Length = 176
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ D + I I+EA IS+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYALRVLLYLAVRGDGLSTIQDISEAYGISKNHLMKVVQQLGEFGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ DVV+ TE F + C + C + C L L+ A A
Sbjct: 61 NGGLRLSAQSLSLTVGDVVRVTESDFALVGCLPDRQGQQRPCVITSQCRLRGALQAANLA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
F L +++I + + +S + + G
Sbjct: 121 FLAELDRFTIGDVAQPKSPLAALLGLG 147
>gi|317500549|ref|ZP_07958771.1| iron-sulfur cluster assembly transcription factor IscR
[Lachnospiraceae bacterium 8_1_57FAA]
gi|331089351|ref|ZP_08338251.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316898059|gb|EFV20108.1| iron-sulfur cluster assembly transcription factor IscR
[Lachnospiraceae bacterium 8_1_57FAA]
gi|330405414|gb|EGG84949.1| hypothetical protein HMPREF1025_01834 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 142
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 68/136 (50%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A + P I+ I+ ISE +L +++ L KAGIV +VRG
Sbjct: 1 MKLSTKGRYGLRALIDLAQNGGEQPVSITSISTRQDISERYLEQLMSMLKKAGIVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + + I++ DV++A E S +C C + SC V +K ++
Sbjct: 61 AGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSCVTKYVWKKINDSI 120
Query: 119 FDVLTQYSIECLVRNR 134
+ + ++ LV+
Sbjct: 121 NQTVDEIKLDQLVKEN 136
>gi|302871528|ref|YP_003840164.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
obsidiansis OB47]
gi|302574387|gb|ADL42178.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
obsidiansis OB47]
Length = 150
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R + A+H ++ + IAE ISE +L +++ L KAG+V+++RG
Sbjct: 3 RLSTKGRYGVRAMFDLALHYDEGLVSLKSIAERQEISEHYLEQLIAALKKAGLVKSIRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +ITI ++++A E S +EC K+DCP C V K A
Sbjct: 63 QGGYMLSREPSKITIGEILRALEGSLSPSECIDDIEKVDCPRAEFCVTRKVWEKVKEAIE 122
Query: 120 DVLTQYSIECLVRNRSSI 137
+V+ +++ LV + +
Sbjct: 123 NVVDSVTLQNLVDDYKKM 140
>gi|284049281|ref|YP_003399620.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
fermentans DSM 20731]
gi|283953502|gb|ADB48305.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
fermentans DSM 20731]
Length = 140
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ AI+ + I +++ ISE +L +I+ L +A +V++ RG
Sbjct: 1 MKISTKGRYALRLMIDLAINGTESYVPIKSVSQRQEISEKYLEQIITQLSRAKLVKSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R T ++++A E S C C C + ++ +A
Sbjct: 61 AQGGYKLVRDPKDYTAGEILRAVEGSLAPVACLEPGHAICDRAAHCVTLDLWKEIQDAID 120
Query: 120 DVLTQYSIECLVRNRSS 136
+++ ++E LV+ +
Sbjct: 121 NIVDNTTLEDLVKKQEK 137
>gi|300854396|ref|YP_003779380.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300434511|gb|ADK14278.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
Length = 148
Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AIH +D P+ I I+E ISE +L ++ L K+ +V+++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYSDEPSSIKSISERQNISEYYLEQLFSNLRKSNLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
+GG L R IT+ D++K E +++C + C + C + + +
Sbjct: 61 AQGGYILNREPKDITVADIMKVLEGPIEISDCVDENNENSCSNMDCCATRLLWSRIKESI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V+ +++ +V + +K+
Sbjct: 121 EQVMKSTTLQDMVDDYIQMKQ 141
>gi|108758209|ref|YP_635032.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
gi|108462089|gb|ABF87274.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
Length = 148
Score = 138 bits (347), Expect = 4e-31, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT DY +RVL+Y A P ++A+A IS+ L +++Q L G+V+ GR
Sbjct: 1 MHLTLHADYSLRVLLYLATRTGRPVSTQEMADAYGISKHHLVRVVQTLAGQGVVDARAGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L R I + V++A E F + ECF + CP+ +CGL VL +A AF
Sbjct: 61 SGGVVLARAPADIQVGSVLRAAEPDFHLVECFDRERNACPIAPACGLKGVLDEAREAFLA 120
Query: 121 VLTQYSIECLVRN-RSSIKKIF 141
VL +Y++ L+R R +++ F
Sbjct: 121 VLDRYTLADLLRRSRPNLQDYF 142
>gi|291523269|emb|CBK81562.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
GD/7]
Length = 143
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R+++ A ++ P RI IA IS +L +I+ L KAG V+++RG
Sbjct: 1 MKISTRGRYALRMMLDIATNDHGEPVRIKDIAARQDISVKYLEQIVSVLTKAGYVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R T+ +++ TE C + DCP + C + ++ A
Sbjct: 61 PQGGYRLARLPKDYTVGMILRLTEGDLSPVSC-TDNNYDCPKMQDCVTIRIWKELDEAIN 119
Query: 120 DVLTQYSIECLVRNRSS 136
V+ +Y++E L+ + +
Sbjct: 120 SVIDKYTLEDLLDWQDA 136
>gi|225175552|ref|ZP_03729546.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
alkaliphilus AHT 1]
gi|225168881|gb|EEG77681.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
alkaliphilus AHT 1]
Length = 149
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R + A+H+ + +A+ ISE +L + L KAG++ +VRG
Sbjct: 1 MRLSTKGRYGVRAMFDLALHSGEGAIALKSVAQREHISEKYLEHLFASLKKAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA 117
+GG RL RP ++IT+ D+++ E EC C C + S+ +
Sbjct: 61 AQGGYRLARPPEEITLGDIIRVLEGPIAPTECVIDDDGHESCERSTDCVMRSIWGNVRDQ 120
Query: 118 FFDVLTQYSIECLVRNRSSI 137
++L ++ +V + +
Sbjct: 121 INEILDGITLAQIVEEQRKM 140
>gi|297616499|ref|YP_003701658.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Syntrophothermus lipocalidus DSM 12680]
gi|297144336|gb|ADI01093.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus
lipocalidus DSM 12680]
Length = 144
Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R ++ A+H N+ P + +AE +SE +L +++ PL KAG+V++VRG
Sbjct: 1 MKVSTKGRYGLRAMLDMALHQNEGPMAVHIVAERQGLSERYLEQLMVPLKKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
+GG L + IT+ ++++A E +C + +C C + K ++
Sbjct: 61 PQGGYVLTKKPRDITVGEIIRALEGPIAPVDCVSEQTPEECERAEFCVTRLIWSKMRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
+VL S+E L++ I
Sbjct: 121 AEVLDSLSLEDLIQESRKI 139
>gi|323699033|ref|ZP_08110945.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
ND132]
gi|323458965|gb|EGB14830.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans ND132]
Length = 150
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+++ A H D P RI IA+ +S +L K+++ L G V++ RG
Sbjct: 1 MKLTTRSRYGTRMMLDIAQHGKDGPVRIQDIADRQGVSAKYLEKLIRKLKDVGFVKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L +PA +I I +VV A E + EC + K C + C + ++A +A +
Sbjct: 61 PRGGHSLAKPAAEIPIGEVVHALEGDGSLVECRSGDK-GCSRMKECLTRRLWQEAADAMY 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
+ L +++ L+ + +
Sbjct: 120 ERLNTFTLADLINDAEQCR 138
>gi|313905467|ref|ZP_07838831.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
gi|313469651|gb|EFR64989.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
Length = 144
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A+H++ P RI I+ IS +L +I+ LV+A +++VRG
Sbjct: 1 MKISTKGRYALRMMLDIALHDNGVPVRIKDISARQEISLKYLEQIVSALVRAKYLKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + A + T+ D+++ TE S EC A DCP GSC + + A
Sbjct: 61 PQGGYLLAKKASEYTVGDILRVTEGSLSPVECLAGDVNDCPRRGSCVTLRLWEELDEAIS 120
Query: 120 DVLTQYSIECL 130
V+ Y+IE L
Sbjct: 121 KVVDSYTIEDL 131
>gi|254443774|ref|ZP_05057250.1| rrf2 family protein (putative transcriptional regulator)
[Verrucomicrobiae bacterium DG1235]
gi|198258082|gb|EDY82390.1| rrf2 family protein (putative transcriptional regulator)
[Verrucomicrobiae bacterium DG1235]
Length = 144
Score = 137 bits (346), Expect = 5e-31, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 82/137 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK TDY +R+L+Y ++ + +++IA+A IS+ L KI L + GIV RG+
Sbjct: 1 MELTKFTDYSLRMLLYLGLNEERLVSLTEIADAYSISKNHLVKISAHLSQNGIVAATRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + +I I VV++TE + ECF C + +C L SVL+KA AF+
Sbjct: 61 GGGIRLAKQPHEINIGTVVRSTEGHTPLVECFDPENNRCCITKNCTLKSVLKKAEKAFYA 120
Query: 121 VLTQYSIECLVRNRSSI 137
L Q++++ L++NR +
Sbjct: 121 ELDQHTLQDLLKNRKGL 137
>gi|182418878|ref|ZP_02950135.1| Rrf2 family protein [Clostridium butyricum 5521]
gi|237667382|ref|ZP_04527366.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182377161|gb|EDT74729.1| Rrf2 family protein [Clostridium butyricum 5521]
gi|237655730|gb|EEP53286.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 150
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 70/140 (50%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R + A H P I I++ +SE +L ++ PL +A I+ ++RG
Sbjct: 1 MKLSTKGRYGVRAMAELAAHYGGAPISIKTISKEQNLSEYYLEQLFSPLRRANIIRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG LC+ +IT+ D++ E +A+C C SC V K N+
Sbjct: 61 AQGGYVLCKAPSEITVGDIMTILEGPIEIADCIDG--YACDSEHSCATKFVWEKIKNSID 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
DV+ S++ +V N IKK
Sbjct: 119 DVMNSISLQDIVDNYEKIKK 138
>gi|166033539|ref|ZP_02236368.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC
27755]
gi|166026724|gb|EDR45481.1| hypothetical protein DORFOR_03265 [Dorea formicigenerans ATCC
27755]
Length = 145
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A HN R+ I++ I+ ++ +I+ L K+G V++ RG
Sbjct: 1 MKVSTKGRYALRIMIDLAEHNTGGYIRLKDISKRQGITLKYMEQIMPILTKSGYVKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ++ T ++++A E S C C C +
Sbjct: 61 NNGGYMLAKKPEEYTAGEILRAAEGSLAPVSCIEDEPNACGHYEQCRTVKFWEGLWDVII 120
Query: 120 DVLTQYSIECLVRNRS 135
+ ++++ L++N
Sbjct: 121 EYTDRFTLADLMKNED 136
>gi|238922731|ref|YP_002936244.1| hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656]
gi|238874403|gb|ACR74110.1| Hypothetical protein EUBREC_0307 [Eubacterium rectale ATCC 33656]
gi|291526518|emb|CBK92105.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
DSM 17629]
gi|291527007|emb|CBK92593.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
M104/1]
Length = 144
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R++M A +N P + +A+ IS+ +L +I+ L KAG V +VRG
Sbjct: 1 MKISTKGRYALRLMMDLAENNTGSPISLKDVAKRQDISDKYLEQIISILNKAGYVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L T+ +++ TE S C +I C C + V +K +A
Sbjct: 61 AQGGYMLKMEPQNYTVGMILRQTEGSLAPVACIEDDEIVCDRQQQCVTSIVYKKINDAIS 120
Query: 120 DVLTQYSIECLVRNRSS 136
V+ +++ LV ++
Sbjct: 121 GVVDNITLQDLVDWQNE 137
>gi|167629932|ref|YP_001680431.1| transcriptional regulator, rrf2 family [Heliobacterium
modesticaldum Ice1]
gi|167592672|gb|ABZ84420.1| transcriptional regulator, rrf2 family [Heliobacterium
modesticaldum Ice1]
Length = 150
Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R + A+ P + +AE ISE +L +I+ L KAG+V ++RG
Sbjct: 1 MKLSTKGQYGVRAMFELAMQYGQGPVSLKLVAERQDISEHYLEQIIAGLRKAGLVNSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L R +IT+ D+++ E +C + C C V K ++
Sbjct: 61 AQGGYVLARDPAEITVGDIIRVLEGPVAPVDCVNDDIPERCTRASQCISKRVWAKVRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
V+ ++ + ++ +K
Sbjct: 121 EQVIDSITLADMCKDAEKMK 140
>gi|283852245|ref|ZP_06369517.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
gi|283572327|gb|EFC20315.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
Length = 146
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+++ A+++ P RI IA +S +L K+++ L +AG V + RG
Sbjct: 1 MKLTTRSRYGTRMILDMALNDQAGPVRIKDIAARQGVSVKYLEKLVRELKQAGFVRSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L RP ++I++ +V+A E F + EC CP C V +A A
Sbjct: 61 PRGGHELARPLEEISVGAIVRALEGEFTLVECDGEAGTPCPRQADCLTREVWAEASRAMH 120
Query: 120 DVLTQYSIECLVRNRSS 136
+ L ++ LV +
Sbjct: 121 EKLDAITLADLVGRSRA 137
>gi|52425782|ref|YP_088919.1| hypothetical protein MS1727 [Mannheimia succiniciproducens MBEL55E]
gi|52307834|gb|AAU38334.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 150
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AI+ D P +S I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIAINAEDGPVTLSDISERQNISLSYLEQLFAKLRRHGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +P+ QI+I ++ A E+ V +C +C C + + +
Sbjct: 61 PGGGYQLGQPSGQISIGMIIAAVNENISVTKCLGQG--NCQGGKVCLTHHLWAELSDRIE 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
+ L + ++E LV + S K
Sbjct: 119 NFLNEITLEELVSKQHSQK 137
>gi|288940602|ref|YP_003442842.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum
DSM 180]
gi|288895974|gb|ADC61810.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum
DSM 180]
Length = 160
Score = 137 bits (345), Expect = 6e-31, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH P ++ IA+ IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLAIHQGQGPIALADIAQRQGISLSYLEQLFAKLRKRGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I + +V+ A +ES C +C G C + + +
Sbjct: 61 PGGGYNLARKPVEIHVAEVIAAVDESVDTTRC--GGAHNCQNNGPCLTHDLWHDLSDRIY 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L Q ++ LV R S+ +
Sbjct: 119 DYLNQIDLQTLVDQRDSLGQ 138
>gi|239833919|ref|ZP_04682247.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
intermedium LMG 3301]
gi|239821982|gb|EEQ93551.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
intermedium LMG 3301]
Length = 211
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 106/142 (74%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 59 MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 118
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A I++ DVV+ TEE+F +AECF + +CPLV SC L S LR+ALNAFF
Sbjct: 119 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 178
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 179 VLMKYSIADLVKARPNVRHLLG 200
>gi|153953942|ref|YP_001394707.1| transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219854556|ref|YP_002471678.1| hypothetical protein CKR_1213 [Clostridium kluyveri NBRC 12016]
gi|146346823|gb|EDK33359.1| Transcriptional regulator [Clostridium kluyveri DSM 555]
gi|219568280|dbj|BAH06264.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 148
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AIH D P I I+E ISE +L ++ L K+ ++ ++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGDEPLSIKTISERQGISEYYLEQLFSNLRKSNLIRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
+GG L R IT+ D++ E +++C + C + C + + +
Sbjct: 61 SQGGYILNREPKNITVWDIMGVLEGPIEISDCVDDNNESSCDNIDCCATRLLWSRIKDGI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+++ +++ +V + +S+K+
Sbjct: 121 DEIMKSTTLQDMVDDYNSMKQ 141
>gi|325678776|ref|ZP_08158374.1| putative HTH-type transcriptional regulator IscR [Ruminococcus
albus 8]
gi|324109280|gb|EGC03498.1| putative HTH-type transcriptional regulator IscR [Ruminococcus
albus 8]
Length = 144
Score = 136 bits (344), Expect = 7e-31, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R++ A H D I IAE IS+ +L +I+ L +AG V ++RG
Sbjct: 1 MKISTKGRYALRLMTDLAEHHQDGYVPIKVIAERQNISDKYLEQIISILSRAGYVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P + T+ +++ TE S C + + C +C + K A
Sbjct: 61 AGGGYMLAYPPENYTVGMILRLTEGSLAPVACLETDENLCERAENCPTLFIWEKLYAAIN 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
DV+ ++ +V +++ +N
Sbjct: 121 DVVDNITVADIVARKTNAGDFYN 143
>gi|114777146|ref|ZP_01452166.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1]
gi|114552667|gb|EAU55127.1| hypothetical protein SPV1_07279 [Mariprofundus ferrooxydans PV-1]
Length = 153
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 77/142 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y ++ + I++I++A I+ L K++ L + G + T RG+
Sbjct: 1 MQLTQYTDYSLRVLIYLGLYPERRCTITEISDAYDINRNHLVKVVHSLSQDGWITTTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L QI I V++ TE + ECF + CP+ +C L L +A AF +
Sbjct: 61 SGGMVLSFNPKQINIGAVIQGTEPHMNLLECFDNKYNTCPITSACVLKHALYQARKAFMN 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL+ Y++E ++ + +
Sbjct: 121 VLSNYTLEDVLVQPEILISLLG 142
>gi|294497180|ref|YP_003560880.1| nitric oxide sensitive transcriptional regulator [Bacillus
megaterium QM B1551]
gi|294347117|gb|ADE67446.1| transcriptional regulator, nitric oxide sensitive [Bacillus
megaterium QM B1551]
Length = 149
Score = 136 bits (344), Expect = 8e-31, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY +RVL+Y + ++ I +IAEA IS+ L KI+ L K G++ET+RG
Sbjct: 1 MRLTQYTDYSLRVLLYLGVRDNNKLSNIKEIAEAYNISKNHLMKIIHELGKLGLIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I VV+ TEE F + ECF C + C L SVL +A+ AF
Sbjct: 61 RNGGIRLAQLPKDINIGKVVRQTEEDFHIVECFDCEGNFCIISPVCKLKSVLHEAMQAFI 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL QY++E L++N+ + +
Sbjct: 121 KVLDQYTLEDLIQNKDELNLLL 142
>gi|303228671|ref|ZP_07315496.1| putative HTH-type transcriptional regulator IscR [Veillonella
atypica ACS-134-V-Col7a]
gi|303231408|ref|ZP_07318141.1| putative HTH-type transcriptional regulator IscR [Veillonella
atypica ACS-049-V-Sch6]
gi|302513916|gb|EFL55925.1| putative HTH-type transcriptional regulator IscR [Veillonella
atypica ACS-049-V-Sch6]
gi|302516651|gb|EFL58568.1| putative HTH-type transcriptional regulator IscR [Veillonella
atypica ACS-134-V-Col7a]
Length = 139
Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG
Sbjct: 1 MKISTKGRYALRILADIAEHGTEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + + +++ A E+S + C CP+ C + + + F
Sbjct: 61 KYGGYRLVKDPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
V+ + S++ ++ ++ ++
Sbjct: 121 HVMERVSLQDVMDHKFPVE 139
>gi|227820925|ref|YP_002824895.1| iron-responsive transcriptional regulator [Sinorhizobium fredii
NGR234]
gi|227339924|gb|ACP24142.1| putative transcriptional regulator, Rrf2 family [Sinorhizobium
fredii NGR234]
Length = 154
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 86/142 (60%), Positives = 111/142 (78%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + + +RI +IA+A +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAKAYGVSELFLFKILQPLTRAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +PA +I++ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFFD
Sbjct: 61 NGGVRLPKPASEISLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+I+ LV+ R I +
Sbjct: 121 VLKGYTIDDLVKARPQINFLLG 142
>gi|260588146|ref|ZP_05854059.1| iron-sulfur cluster assembly transcription factor IscR [Blautia
hansenii DSM 20583]
gi|331082288|ref|ZP_08331414.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541673|gb|EEX22242.1| iron-sulfur cluster assembly transcription factor IscR [Blautia
hansenii DSM 20583]
gi|330400774|gb|EGG80375.1| hypothetical protein HMPREF0992_00338 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 150
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A+++D I I+ IS+ +L ++++ L KAG+V + RG
Sbjct: 1 MKLSTKGRYGLRALIDLALYSDEEAVSIQSISNRQNISDSYLEQLMRKLKKAGLVVSERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL +PAD+I++ DV++A E S C A + C C V ++ +
Sbjct: 61 AQGGYRLAKPADEISVGDVLRALEGSLEAVSCGAGNNEHCQGEDLCVTRYVWQEINKSIQ 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ + I LV ++
Sbjct: 121 ETVDSIKISQLVEESRKARE 140
>gi|325290921|ref|YP_004267102.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
glycolicus DSM 8271]
gi|324966322|gb|ADY57101.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
glycolicus DSM 8271]
Length = 149
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 70/142 (49%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R ++ A++ + P I+ IA+ ISE +L ++L + + G+++++RG
Sbjct: 1 MKISTKGRYGLRAILDVALNEKEGPVTINSIAKRQEISERYLEQLLIVMKQRGLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L + +I++ DV++A E +C + C C V +
Sbjct: 61 FQGGYLLNKEPREISVGDVIRALEGPIAPVDCVNDDDTEQCSRSNYCVTKIVWEDLKQSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
VL YS+ L+ ++ I
Sbjct: 121 TKVLDSYSLRDLMEEEEKVRSI 142
>gi|295109801|emb|CBL23754.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
A2-162]
Length = 143
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +RV++ A HN + IA+ ISE +L I+ L K V+ +RG
Sbjct: 1 MKISTRGRYALRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + TI +++ TE S C H C SC + +
Sbjct: 61 KGGGYRLAKTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEEFYKLIN 120
Query: 120 DVLTQYSIECLVRNRSSI 137
+ ++E L+ +S +
Sbjct: 121 EYFDGITLEDLLEQKSDV 138
>gi|260912948|ref|ZP_05919433.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella
dagmatis ATCC 43325]
gi|260632938|gb|EEX51104.1| iron-sulfur cluster assembly transcription factor IscR [Pasteurella
dagmatis ATCC 43325]
Length = 154
Score = 136 bits (343), Expect = 9e-31, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P +S I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALHSKRGPVSLSDISERQHISLSYLEQLFAKLRRYGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P ++I++ V+ A E+ V C DC C S+ ++
Sbjct: 61 PGGGYQLGLPTNEISVGMVINAVNENIDVTRCHGRG--DCQEGIECLTHSLWKELSQRIE 118
Query: 120 DVLTQYSIECLVRN 133
D L + ++ LV
Sbjct: 119 DFLNEITLAELVDK 132
>gi|238018454|ref|ZP_04598880.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748]
gi|237864925|gb|EEP66215.1| hypothetical protein VEIDISOL_00281 [Veillonella dispar ATCC 17748]
Length = 139
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG
Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + + +++ A E+S + C CP+ C + + + F
Sbjct: 61 KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120
Query: 120 DVLTQYSIECLVRNR 134
V+ + S++ ++ ++
Sbjct: 121 HVMERVSLQDVMDHK 135
>gi|114319388|ref|YP_741071.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
ehrlichii MLHE-1]
gi|114225782|gb|ABI55581.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
ehrlichii MLHE-1]
Length = 162
Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY RVL+Y I IA+ IS L K++ L G +ETVRG+
Sbjct: 1 MRLTVYSDYAFRVLVYLGTRPGERATIRGIADCYGISRNHLTKVVHQLGSQGYIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
GG+RL R + I + +V++ TEE F + EC C + G C L VL +A AF
Sbjct: 61 GGGLRLTRDPEGIGVGEVLRDTEEGFGLVECMRPSGRGMCRIEGGCRLRGVLGEATRAFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++ L+ NR + ++
Sbjct: 121 AVLDRYTLADLLENRDELAQLL 142
>gi|78066618|ref|YP_369387.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
gi|77967363|gb|ABB08743.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
Length = 171
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG+RL + Q+T+ VV+ATE F + CF C + C L VL A +AF
Sbjct: 61 NGGLRLFPESLQLTVGQVVRATESDFALVGCFSAEGESRGCVIEPQCRLKGVLAAARDAF 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
F L ++++ LV + + +
Sbjct: 121 FAELDRHTLGELVEPAAPLVALLG 144
>gi|229814919|ref|ZP_04445257.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM
13280]
gi|229809406|gb|EEP45170.1| hypothetical protein COLINT_01962 [Collinsella intestinalis DSM
13280]
Length = 146
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H +D + +IA ISE +L IL LV+ G++ +RG
Sbjct: 1 MLVSTKGRYALRVMIDLAEHRSDGRTPLRKIAARQGISEKYLENILTTLVRHGLLSGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG L R + TI +V++ TE S C C C V R+ +
Sbjct: 61 KGGGYCLTREPEDFTIGEVLRLTEGSLCPVACLEHGHDGCDRAEHCRTVRVWRELDSLIE 120
Query: 120 DVLTQYSIECLVRNRS 135
+ L ++ LVR+ S
Sbjct: 121 NYLNGVTLADLVRDES 136
>gi|261867572|ref|YP_003255494.1| iron-sulfur cluster assembly transcription factor IscR
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|293390585|ref|ZP_06634919.1| iron-sulfur cluster assembly transcription factor IscR
[Aggregatibacter actinomycetemcomitans D7S-1]
gi|261412904|gb|ACX82275.1| iron-sulfur cluster assembly transcription factor IscR
[Aggregatibacter actinomycetemcomitans D11S-1]
gi|290951119|gb|EFE01238.1| iron-sulfur cluster assembly transcription factor IscR
[Aggregatibacter actinomycetemcomitans D7S-1]
Length = 157
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ ND P +S I+E IS +L ++ L + +V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALYANDGPVSLSDISERQHISLSYLEQLFAKLRRHNVVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +I+I ++ A E+ C +C C S+ K
Sbjct: 61 PGGGYKLGFAPSEISIAMIITAVNENIETTACLG--HGNCSNGSECLTHSLWEKLSQRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L++ ++E LV + ++
Sbjct: 119 DFLSEITLEELVLQQKGRQQ 138
>gi|187736491|ref|YP_001878603.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia
muciniphila ATCC BAA-835]
gi|187426543|gb|ACD05822.1| transcriptional regulator, BadM/Rrf2 family [Akkermansia
muciniphila ATCC BAA-835]
Length = 147
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/145 (28%), Positives = 70/145 (48%), Gaps = 1/145 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R+++ A H D + +I+ ++ +L +I+ L+KAG V++ RG
Sbjct: 2 MKVSTRGRYALRLMIDLAQHRDEGYISLKEISARQDVTVRYLEQIIAILLKAGFVQSFRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R + T D++K TE S C ASH+ CP C R
Sbjct: 62 KAGGYRLSRHPREYTTEDILKLTEGSLLPLSCTASHENPCPRAAGCATLPFWRGLQQVIE 121
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
+ L + ++E L + I + AG
Sbjct: 122 NYLRRVTLEDLAEQQKEIGCDYGAG 146
>gi|269798676|ref|YP_003312576.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Veillonella parvula DSM 2008]
gi|294792648|ref|ZP_06757795.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 6_1_27]
gi|269095305|gb|ACZ25296.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
DSM 2008]
gi|294456547|gb|EFG24910.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 6_1_27]
Length = 139
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG
Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + + +++ A E+S + C CP+ C + + + F
Sbjct: 61 KYGGYRLVKDPSEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120
Query: 120 DVLTQYSIECLVRNR 134
V+ S++ ++ ++
Sbjct: 121 HVMEHVSLQDVMDHK 135
>gi|152978539|ref|YP_001344168.1| BadM/Rrf2 family transcriptional regulator [Actinobacillus
succinogenes 130Z]
gi|150840262|gb|ABR74233.1| transcriptional regulator, BadM/Rrf2 family [Actinobacillus
succinogenes 130Z]
Length = 154
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+ + P +S I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALFGTNGPVTLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L D+I+I ++ A E+ V +C +C C S+ + +
Sbjct: 61 PGGGYQLGHSMDKISIGMIIAAVNENIAVTKCLGKG--NCQNGTECLTHSLWAELSHRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L + ++ LV+ S +K
Sbjct: 119 DFLDKITLAELVKKHHSKQK 138
>gi|220929352|ref|YP_002506261.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Clostridium cellulolyticum H10]
gi|219999680|gb|ACL76281.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulolyticum H10]
Length = 148
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R ++ A H ++ + IAE +SE +L ++ L K+G+V+++RG
Sbjct: 1 MKVSTKGRYGLRAIVDLAAHESEGQVSLKSIAERQNLSENYLEQLFSSLKKSGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+GG L R AD++T+ D++++ E + +C +C C V K +
Sbjct: 61 AQGGYLLARTADKMTVGDILRSLEGTLCPVDCIDPDVPSNCDRADECVTVDVWAKIRDKV 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+V+ ++ LV +
Sbjct: 121 NEVVDSITLADLVSELEN 138
>gi|302386870|ref|YP_003822692.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
gi|302197498|gb|ADL05069.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
Length = 146
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 66/137 (48%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + Y +R+++ A+H +I+Q+AE IS+ +L +I+ L +AG V++ RG
Sbjct: 1 MKFSTKGRYALRMMLEFALHPGECTKINQVAERQEISDKYLEQIVTILSRAGYVKSRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L + + T+ +++ E S C C +C V ++ +A
Sbjct: 61 QGGYYLTKDPSEYTVGMILRLAEGSLVPVTCLEDEVNPCSRSQNCATLMVWKELDHAISH 120
Query: 121 VLTQYSIECLVRNRSSI 137
V+ ++ LV + +
Sbjct: 121 VVDGITLADLVEEQKRL 137
>gi|315633897|ref|ZP_07889186.1| iron-sulfur cluster assembly transcription regulator IscR
[Aggregatibacter segnis ATCC 33393]
gi|315477147|gb|EFU67890.1| iron-sulfur cluster assembly transcription regulator IscR
[Aggregatibacter segnis ATCC 33393]
Length = 160
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH D P +S I+E IS +L ++ L + +V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIAIHADNGPVSLSDISERQHISLSYLEQLFAKLRRNNLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + I+I ++ A E+ +C +C C ++ K
Sbjct: 61 PGGGYKLGHMPEDISIGMIIAAVNENIDTTKCLGKG--NCQNGQECLTHTLWDKLSQRIA 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L + ++ LV K
Sbjct: 119 DFLNEITLAELVSQHKQKK 137
>gi|332527665|ref|ZP_08403710.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
benzoatilyticus JA2]
gi|332112067|gb|EGJ12043.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
benzoatilyticus JA2]
Length = 155
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A I +IA SE L K++ L G++ TVRG+
Sbjct: 1 MKLTSFTDYSLRVLIYLATRPGRRATIGEIAAKFSASENHLTKVVHFLGTEGVLATVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RP I + D+V+ TE AECF S C + C L VL +A+ AF+
Sbjct: 61 GGGLGLARPPQDIVVGDIVRRTEGEAMPAECFGSGG-GCAIAPCCRLRGVLGEAVEAFYA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++E LV NR + I
Sbjct: 120 VLDRYTLEDLVANRDQLDAILR 141
>gi|157371863|ref|YP_001479852.1| DNA-binding transcriptional regulator IscR [Serratia proteamaculans
568]
gi|189044752|sp|A8GHY4|ISCR_SERP5 RecName: Full=HTH-type transcriptional regulator iscR
gi|157323627|gb|ABV42724.1| transcriptional regulator, BadM/Rrf2 family [Serratia
proteamaculans 568]
Length = 164
Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLAELVNNQDVL 136
>gi|74318032|ref|YP_315772.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
denitrificans ATCC 25259]
gi|74057527|gb|AAZ97967.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans
ATCC 25259]
Length = 156
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 58/139 (41%), Positives = 79/139 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R LMY A H D IS+IAE IS+ L K++ L +G+V+T+RGR
Sbjct: 1 MRLTTYTDYALRTLMYLATHRDRLVTISEIAEVHGISKNHLMKVVYQLGLSGLVDTLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R +IT+ +VV++TE F +AECF C +C L VL A A+
Sbjct: 61 NGGLRLKREPTEITVGEVVRSTETDFDMAECFDPSGDRCLYSPACVLKDVLSSATLAYLG 120
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL + ++ LV KK
Sbjct: 121 VLDKVTLGDLVGGGRGRKK 139
>gi|78045031|ref|YP_361013.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77997146|gb|ABB16045.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 148
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG++ + A+H + P IS+IA ISE +L ++ L KAG++++VRG
Sbjct: 1 MRLSTRGHYGLKAIYDLALHYGEGPVPISEIARRQMISEPYLEQLFSVLRKAGLIKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+GG L R ++IT+ +VV+ E EC + + K C +C V K +A
Sbjct: 61 AQGGYLLNRLPEEITVGEVVRVLEGPIAPVECVSENVKEACDQADACISRVVWAKVRDAL 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
VL +++ ++ +
Sbjct: 121 NKVLDSITLKDMIEEAKKNQ 140
>gi|220931730|ref|YP_002508638.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii
H 168]
gi|219993040|gb|ACL69643.1| transcriptional regulator, BadM/Rrf2 family [Halothermothrix orenii
H 168]
Length = 151
Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 2/146 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R YG+R ++ AIH D + +IAE ISE +L ++ L KAG+V++VRG
Sbjct: 1 MKISTRGRYGLRAMVDLAIHQDSGAIPLREIAERQQISEQYLEQLFANLRKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
GG L R AD+IT DV++ E +C + D C L+ C + K
Sbjct: 61 AHGGYLLNRDADEITAGDVLRTLEGPIAPTDCVLDNDEDVCSLIDKCVTHELWVKLQKQV 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
++L ++ L + + N G
Sbjct: 121 SEILDSVTLRDLQERAKELIRNKNKG 146
>gi|89095323|ref|ZP_01168241.1| Transcriptional Regulator, BadM/Rrf2 family protein
[Oceanospirillum sp. MED92]
gi|89080398|gb|EAR59652.1| Transcriptional Regulator, BadM/Rrf2 family protein
[Oceanospirillum sp. MED92]
Length = 164
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHEGKGPISLADISERQGISLSYLEQLFAKLRRNELVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R +I + +V+ A ES C + + DC +C + +
Sbjct: 61 PGGGYQLNREQPEINVAEVIDAVNESVDATGC--NRQGDCQGGETCLTHHLWCDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
L+ S+ LV +
Sbjct: 119 GFLSGISLADLVARKD 134
>gi|270264746|ref|ZP_06193011.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270041429|gb|EFA14528.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 164
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKEASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLAELVNNQEVL 136
>gi|323141801|ref|ZP_08076668.1| putative HTH-type transcriptional regulator CymR
[Phascolarctobacterium sp. YIT 12067]
gi|322413724|gb|EFY04576.1| putative HTH-type transcriptional regulator CymR
[Phascolarctobacterium sp. YIT 12067]
Length = 145
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A H D + IA IS+ +L +I+ L K+ ++ RG
Sbjct: 1 MKISTKGRYALRMMLDLAEHQQDGFVALKDIAARQNISKKYLEQIVPILNKSNFLQANRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + T+ +++ TE + C + + C C + +
Sbjct: 61 FQGGYRLVNAPREYTVGSILRLTEGNLTPVACLDFNPVGCERRNECITLPLWQGLNKVIA 120
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ N +
Sbjct: 121 DYLDNITLQDILDNYKA 137
>gi|119944403|ref|YP_942083.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas
ingrahamii 37]
gi|119863007|gb|ABM02484.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas
ingrahamii 37]
Length = 147
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 87/144 (60%), Gaps = 3/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +R+L+Y AI+ND + I++IA++ IS+ L KI+Q L G + +RG+
Sbjct: 1 MHITRYTDYSLRILIYLAINNDQLSTINEIAQSYHISKNHLMKIVQQLNVKGYLLAIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L R I I +V+ E+S + ECF+ C + SC L + +A +FF+
Sbjct: 61 NGGIKLNRDPGDINIGSLVREMEDSNKLVECFSD-NNHCVISPSCQLKGIFAEAQESFFN 119
Query: 121 VLTQYSIECL--VRNRSSIKKIFN 142
L +Y++ L V+ ++ + ++ +
Sbjct: 120 TLDKYTLADLVAVKRQTELGELLD 143
>gi|302387033|ref|YP_003822855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
gi|302197661|gb|ADL05232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
Length = 143
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y IR+++ A HN + IA+ ISE +L I+ L K ++ ++RG
Sbjct: 1 MKISTRGRYAIRLMIDLAEHNNGEYITLMDIAKRQEISEKYLEAIVSILSKNNLLVSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + + TI +++ TE S C +C C +
Sbjct: 61 KGGGYKLAKDPESYTIGSILRLTEGSLAPVACLDGENNNCSRSPECQTIDLWEGLNKLIN 120
Query: 120 DVLTQYSIECLVRNRS 135
+ L +I L++
Sbjct: 121 EYLDGVTIADLMKKSD 136
>gi|282849760|ref|ZP_06259144.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
gi|294794427|ref|ZP_06759563.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 3_1_44]
gi|282580697|gb|EFB86096.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
gi|294454757|gb|EFG23130.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 3_1_44]
Length = 139
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A H + I +IAE S+ +L I+ L AG+V++ RG
Sbjct: 1 MKISTKGRYALRILADIAEHGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + + +++ A E+S + C CP+ C + + + F
Sbjct: 61 KYGGYRLVKSPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120
Query: 120 DVLTQYSIECLVRNR 134
V+ S++ ++ ++
Sbjct: 121 HVMEHVSLQDVMDHK 135
>gi|326201925|ref|ZP_08191795.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
papyrosolvens DSM 2782]
gi|325987720|gb|EGD48546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
papyrosolvens DSM 2782]
Length = 148
Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R ++ A H ++ + +AE +SE +L ++ L K+G+V+++RG
Sbjct: 1 MKVSTKGRYGLRAIVDLAAHESEGQVSLKSVAERQKLSENYLEQLFSSLKKSGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+GG L RPAD+IT+ D++++ E + EC C C V K +
Sbjct: 61 AQGGYLLSRPADKITVGDILRSLEGTLCPVECIDPDLPGSCDRADECVTADVWAKIRDKI 120
Query: 119 FDVLTQYSIECLVRN 133
+V+ ++ LV
Sbjct: 121 NEVVDSITLADLVSE 135
>gi|222084938|ref|YP_002543467.1| rhizobial iron transcriptional regulator protein [Agrobacterium
radiobacter K84]
gi|221722386|gb|ACM25542.1| rhizobial iron transcriptional regulator protein [Agrobacterium
radiobacter K84]
Length = 162
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 87/142 (61%), Positives = 109/142 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + Y +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGYLSRIPEIAKAYGVSELFLFKILQPLTKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +P I++ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFFD
Sbjct: 61 NGGVRLGKPPTDISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VLT+YSI+ LV+ R I +
Sbjct: 121 VLTEYSIDDLVKARPQINFLLG 142
>gi|169333997|ref|ZP_02861190.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM
17244]
gi|169258714|gb|EDS72680.1| hypothetical protein ANASTE_00389 [Anaerofustis stercorihominis DSM
17244]
Length = 143
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A + + + ++++ IS +L +I L K G + +VRG
Sbjct: 1 MKISTKGRYALRLMIDLAKNYDGKYITLKEVSKRQDISIKYLEQITTQLCKVGYLNSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + + T D+++ TE S C + + C GSC + N
Sbjct: 61 PKGGYKLAKEPREYTAGDILRVTEGSLAPIACLEAEENACTRSGSCATLPFWKGLYNVIE 120
Query: 120 DVLTQYSIECLVRNRSS 136
+ + ++E L+ +
Sbjct: 121 NYVNNVTLEDLLDDEKD 137
>gi|304398596|ref|ZP_07380468.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
gi|304353807|gb|EFM18182.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
Length = 165
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ++ I++ +V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKESNTISVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L ++ LV N+ +
Sbjct: 119 EFLNNITLAELVNNQEIL 136
>gi|331091033|ref|ZP_08339875.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405255|gb|EGG84791.1| hypothetical protein HMPREF9477_00518 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 152
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 74/142 (52%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A +++ P I+ I+ ISE +L +++ L KAG+V+++RG
Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEVEPVSINSISARQGISERYLEQLMALLKKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + + I++ DV++A E EC S + C G C V ++ +
Sbjct: 61 AGGGYVLAKEKEDISVGDVLRALEGKLEPVECSGFSAEESCEAAGGCVTKYVWQRINESI 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+ + + ++ LVR ++ I
Sbjct: 121 NNTVDEIKLDQLVRESKAMNSI 142
>gi|123441401|ref|YP_001005388.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|238788188|ref|ZP_04631983.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii
ATCC 33641]
gi|332162656|ref|YP_004299233.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|189044754|sp|A1JKQ1|ISCR_YERE8 RecName: Full=HTH-type transcriptional regulator iscR
gi|122088362|emb|CAL11153.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|238723775|gb|EEQ15420.1| HTH-type transcriptional regulator iscR [Yersinia frederiksenii
ATCC 33641]
gi|318606762|emb|CBY28260.1| iron-sulfur cluster regulator IscR [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325666886|gb|ADZ43530.1| DNA-binding transcriptional regulator IscR [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330859250|emb|CBX69600.1| HTH-type transcriptional regulator iscR [Yersinia enterocolitica
W22703]
Length = 164
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137
>gi|331085024|ref|ZP_08334111.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408724|gb|EGG88189.1| hypothetical protein HMPREF0987_00414 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 152
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A +++ P IS IA ISE +L +++ L KAG+++++RG
Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L R + I++ DV++A E + EC + C G C V +K +
Sbjct: 61 AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ + ++ LV ++K
Sbjct: 121 NQTVDEIKLDRLVEESKAMK 140
>gi|322831758|ref|YP_004211785.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
gi|321166959|gb|ADW72658.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
Length = 164
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDSGDIAVGAVITAVDESVDATRC--QGKEGCQNGERCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 119 GFLNNITLAELVNNQEILE 137
>gi|51597176|ref|YP_071367.1| DNA-binding transcriptional regulator IscR [Yersinia
pseudotuberculosis IP 32953]
gi|108808332|ref|YP_652248.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
Antiqua]
gi|108811403|ref|YP_647170.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
Nepal516]
gi|145599514|ref|YP_001163590.1| DNA-binding transcriptional regulator IscR [Yersinia pestis
Pestoides F]
gi|149365356|ref|ZP_01887391.1| Fe-S cluster-containing transcription factor [Yersinia pestis
CA88-4125]
gi|153947579|ref|YP_001400148.1| IscR family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|162418343|ref|YP_001605041.1| DNA-binding transcriptional regulator IscR [Yersinia pestis Angola]
gi|165928257|ref|ZP_02224089.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Orientalis str. F1991016]
gi|166008265|ref|ZP_02229163.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166212578|ref|ZP_02238613.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Antiqua str. B42003004]
gi|167398867|ref|ZP_02304391.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167421227|ref|ZP_02312980.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167423261|ref|ZP_02315014.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|218929956|ref|YP_002347831.1| DNA-binding transcriptional regulator IscR [Yersinia pestis CO92]
gi|229838481|ref|ZP_04458640.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229895486|ref|ZP_04510657.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A]
gi|229899050|ref|ZP_04514194.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
Orientalis str. India 195]
gi|229901657|ref|ZP_04516779.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516]
gi|270489849|ref|ZP_06206923.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis KIM D27]
gi|294504543|ref|YP_003568605.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003]
gi|81638849|sp|Q667Y0|ISCR_YERPS RecName: Full=HTH-type transcriptional regulator iscR
gi|119371156|sp|Q1C5G9|ISCR_YERPA RecName: Full=HTH-type transcriptional regulator iscR
gi|119371157|sp|Q0WD07|ISCR_YERPE RecName: Full=HTH-type transcriptional regulator iscR
gi|119371158|sp|Q1CKB0|ISCR_YERPN RecName: Full=HTH-type transcriptional regulator iscR
gi|189044755|sp|A7FFX0|ISCR_YERP3 RecName: Full=HTH-type transcriptional regulator iscR
gi|189044756|sp|A4TMV5|ISCR_YERPP RecName: Full=HTH-type transcriptional regulator iscR
gi|226711630|sp|A9R819|ISCR_YERPG RecName: Full=HTH-type transcriptional regulator iscR
gi|51590458|emb|CAH22098.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|108775051|gb|ABG17570.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
Nepal516]
gi|108780245|gb|ABG14303.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
Antiqua]
gi|115348567|emb|CAL21508.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145211210|gb|ABP40617.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
Pestoides F]
gi|149291769|gb|EDM41843.1| Fe-S cluster-containing transcription factor [Yersinia pestis
CA88-4125]
gi|152959074|gb|ABS46535.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pseudotuberculosis IP 31758]
gi|162351158|gb|ABX85106.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis Angola]
gi|165919764|gb|EDR37097.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Orientalis str. F1991016]
gi|165992647|gb|EDR44948.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Antiqua str. E1979001]
gi|166206509|gb|EDR50989.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Antiqua str. B42003004]
gi|166960716|gb|EDR56737.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Orientalis str. MG05-1020]
gi|167051371|gb|EDR62779.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Antiqua str. UG05-0454]
gi|167057431|gb|EDR67177.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis biovar Mediaevalis str. K1973002]
gi|229681586|gb|EEO77680.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Nepal516]
gi|229687995|gb|EEO80067.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
Orientalis str. India 195]
gi|229694847|gb|EEO84894.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701292|gb|EEO89320.1| Iron-sulfur cluster regulator IscR [Yersinia pestis Pestoides A]
gi|262362464|gb|ACY59185.1| hypothetical protein YPD4_2278 [Yersinia pestis D106004]
gi|270338353|gb|EFA49130.1| iron-sulfur cluster assembly transcription factor IscR [Yersinia
pestis KIM D27]
gi|294355002|gb|ADE65343.1| hypothetical protein YPZ3_2433 [Yersinia pestis Z176003]
gi|320016040|gb|ADV99611.1| Iron-sulfur cluster regulator IscR [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 164
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137
>gi|172060807|ref|YP_001808459.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|171993324|gb|ACB64243.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MC40-6]
Length = 172
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + ++T+ VV+ATE F + CF C + C L VL A +A
Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++ L S + +
Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145
>gi|317490853|ref|ZP_07949289.1| iron-sulfur cluster assembly transcription factor IscR
[Enterobacteriaceae bacterium 9_2_54FAA]
gi|316920400|gb|EFV41723.1| iron-sulfur cluster assembly transcription factor IscR
[Enterobacteriaceae bacterium 9_2_54FAA]
Length = 165
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDAAEIAVGTVITAVDESVDATRC--QGKEGCQGGTRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLAELVNNQEVL 136
>gi|187933794|ref|YP_001885366.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B]
gi|188588800|ref|YP_001920513.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43]
gi|251778728|ref|ZP_04821648.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
gi|187721947|gb|ACD23168.1| Rrf2 family protein [Clostridium botulinum B str. Eklund 17B]
gi|188499081|gb|ACD52217.1| Rrf2 family protein [Clostridium botulinum E3 str. Alaska E43]
gi|243083043|gb|EES48933.1| Rrf2 family protein [Clostridium botulinum E1 str. 'BoNT E Beluga']
Length = 147
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A + P I I++ +SE +L ++ PL KA I+ ++RG
Sbjct: 1 MKLSTKGRYGVRAMVDLAFNYGGPPTSIKTISKRQNLSEYYLEQLFSPLRKANIIRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG LC+P +IT+ D++ E +A+C ++C V SC + +K ++
Sbjct: 61 AQGGYVLCKPPSEITVGDIMHVLEGPVEIADCIDG--VECSNVDSCATKLLWQKIKDSID 118
Query: 120 DVLTQYSIECLVRNRS 135
DV+ +++ ++ +
Sbjct: 119 DVMNSITLKDIIDDYE 134
>gi|253580123|ref|ZP_04857390.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
gi|251848642|gb|EES76605.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
Length = 144
Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A+HN +I I+ ISE +L +I+ L KAG V+++RG
Sbjct: 1 MQISTKGRYALRLMLDLAVHNTGELVKIKDISARENISEKYLEQIISSLKKAGYVKSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + T+ +++ TE S C C G C + + A
Sbjct: 61 AQGGYMLAREPETYTVGTILRLTEGSMKPVACLEDEPNQCSRAGECVTLRLWKMLDEAIE 120
Query: 120 DVLTQYSIECLVRNRSSI 137
VL + +++ L +
Sbjct: 121 GVLDKVTLQDLKDWYEEM 138
>gi|15887554|ref|NP_353235.1| iron-responsive transcriptional regulator [Agrobacterium
tumefaciens str. C58]
gi|15155087|gb|AAK86020.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 156
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 86/142 (60%), Positives = 109/142 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +PA++I++ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFFD
Sbjct: 61 NGGVRLGKPAEKISLFDVVRVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI+ LV+ R I +
Sbjct: 121 VLAEYSIDDLVKARPQINFLLG 142
>gi|301155741|emb|CBW15209.1| DNA-binding transcriptional repressor [Haemophilus parainfluenzae
T3T1]
Length = 151
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALHAGTDPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL P DQI+I V+ A E+ V C +C C S+ + +
Sbjct: 61 PGGGYRLALPTDQISIGMVISAVNENINVTRCLGKG--NCQGGVECLTHSLWQDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L + ++ LV +S K
Sbjct: 119 DFLDEITLAELVEKKSGKHK 138
>gi|225026850|ref|ZP_03716042.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353]
gi|224955857|gb|EEG37066.1| hypothetical protein EUBHAL_01103 [Eubacterium hallii DSM 3353]
Length = 152
Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y +R+++ A+++ P R+ IA+ +S +L +I+ L KAG + ++R
Sbjct: 7 MRISTKGRYALRLMLDIAMNDAEGKPVRVKDIAKRQEVSGKYLEQIVSVLTKAGYLRSIR 66
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L + D+ T+ +++ TE S C C + C + RK A
Sbjct: 67 GPQGGYLLTKRPDEYTVGMILRITEGSMEPVPCLEEGSEVCERMEECITIPLWRKLSEAI 126
Query: 119 FDVLTQYSIECLVR 132
VL +++ L+
Sbjct: 127 SGVLDHTTLDDLIE 140
>gi|154484576|ref|ZP_02027024.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC
27560]
gi|149734424|gb|EDM50341.1| hypothetical protein EUBVEN_02292 [Eubacterium ventriosum ATCC
27560]
Length = 151
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A ++ + +AE IS +L I+ L K +V++ RG
Sbjct: 16 MMISTKGRYALRVMIDLAQNDGESFVSLKDVAERQGISMKYLEMIVSLLHKGHMVKSQRG 75
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + + TI ++K TE + C C C + +K +
Sbjct: 76 KAGGYKLVKKPAEYTIGSILKLTEGTLAPVGCLEEGAEKCDRATECITLPLWKKLDDQID 135
Query: 120 DVLTQYSIECLVRNR 134
+ L ++E LV R
Sbjct: 136 EYLESVTLEDLVEGR 150
>gi|114321038|ref|YP_742721.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
ehrlichii MLHE-1]
gi|114227432|gb|ABI57231.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
ehrlichii MLHE-1]
Length = 158
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + +M A+H P ++ I+E+ IS +L ++ L K +V VRG
Sbjct: 1 MKLSTKGRYAVTAMMDLALHEGQGPVTLADISESQGISLSYLEQLFARLRKHSLVSGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PADQITI D++ A +E+ C DC C + +
Sbjct: 61 PGGGYRLAQPADQITIADIITAVDENVDATRCKGRG--DCQEGERCLTHDLWMDLSRQIY 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L + + +
Sbjct: 119 DFLNGITLAQLAQEPAVRR 137
>gi|291559054|emb|CBL37854.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
bacterium SSC/2]
Length = 152
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A+++ D P IS IAE IS +L ++L L KAGI++++RG
Sbjct: 1 MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
+GG L + I+ D+++ E +C F C C +V ++ ++
Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAAFTGDTSTCSGTKFCVTKTVWQRINDS 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ +++ L+ I
Sbjct: 121 VQQAVDSITLQELMEESIEIH 141
>gi|15964483|ref|NP_384836.1| iron-responsive transcriptional regulator [Sinorhizobium meliloti
1021]
gi|307308426|ref|ZP_07588130.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
gi|307318989|ref|ZP_07598420.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|8469098|sp|Q9R9M8|AAU3_RHIME RecName: Full=Protein aau3
gi|15073660|emb|CAC45302.1| Transcriptional regulator of the iron limitation response
[Sinorhizobium meliloti 1021]
gi|306895403|gb|EFN26158.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|306901029|gb|EFN31637.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
Length = 154
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 87/142 (61%), Positives = 110/142 (77%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + + +RI +IA A +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61 NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+I+ LV+ R I +
Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142
>gi|258515490|ref|YP_003191712.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
acetoxidans DSM 771]
gi|257779195|gb|ACV63089.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
acetoxidans DSM 771]
Length = 142
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ + + A+H P + +AE +SE +L +++ L K+G+V++VRG
Sbjct: 1 MRMSTKGHYGLKAMFFLALHYGPDPIPLKNVAERQGLSENYLEQLIATLRKSGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L R +I + D+++ E EC + C C +V K ++
Sbjct: 61 AQGGYILARDPSEIKVGDIIRVLEGPIAPLECVSEGVPSVCDQFDFCITRTVWEKVRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
DVL S+ + ++ +K
Sbjct: 121 ADVLDSISLADMCQDAEKARK 141
>gi|153852839|ref|ZP_01994276.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814]
gi|149754481|gb|EDM64412.1| hypothetical protein DORLON_00258 [Dorea longicatena DSM 13814]
Length = 144
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 58/143 (40%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A + N R+ I+ I+ ++ +I+ L KAG V + RG
Sbjct: 1 MKISTKGRYALRIMIDLAENANGEYIRLKDISARQGITLKYMEQIMPMLTKAGYVRSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ++ T D+++ TE S C C C
Sbjct: 61 NNGGYMLAKEPEEYTAGDIIRTTEGSLAPIACLDDVPNRCERQDQCSTLEFWEGLKKVID 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ ++ LV+N + +
Sbjct: 121 QYVDGVTLADLVKNHEEKCEKLD 143
>gi|238750360|ref|ZP_04611861.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC
43380]
gi|238711291|gb|EEQ03508.1| HTH-type transcriptional regulator iscR [Yersinia rohdei ATCC
43380]
Length = 185
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + V+ A +ES C K C C ++ R
Sbjct: 82 PGGGYLLGKDASEIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158
>gi|238765525|ref|ZP_04626441.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC
33638]
gi|238796770|ref|ZP_04640276.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC
43969]
gi|238696264|gb|EEP89065.1| HTH-type transcriptional regulator iscR [Yersinia kristensenii ATCC
33638]
gi|238719501|gb|EEQ11311.1| HTH-type transcriptional regulator iscR [Yersinia mollaretii ATCC
43969]
Length = 164
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137
>gi|238753892|ref|ZP_04615252.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC
29473]
gi|238707880|gb|EEQ00238.1| HTH-type transcriptional regulator iscR [Yersinia ruckeri ATCC
29473]
Length = 164
Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQNGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A QI + V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKDAAQIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 119 SFLNNITLAELVNNQDILE 137
>gi|292491985|ref|YP_003527424.1| iron-sulfur cluster assembly transcription factor IscR
[Nitrosococcus halophilus Nc4]
gi|291580580|gb|ADE15037.1| iron-sulfur cluster assembly transcription factor IscR
[Nitrosococcus halophilus Nc4]
Length = 166
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+ IS +L ++ L K G+V++ RG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPITLADISRRQGISLSYLEQLFARLRKKGLVDSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A++I+++DV+ A +ES C +C C + +
Sbjct: 61 PGGGYRLSREAEKISVIDVISAVDESVDATRCRG--LKNCQGDQRCLTHELWEDLSRQIY 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L++ ++ LV+ R
Sbjct: 119 EFLSRITLGELVQRRD 134
>gi|170733208|ref|YP_001765155.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia MC0-3]
gi|254248038|ref|ZP_04941359.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184]
gi|124872814|gb|EAY64530.1| hypothetical protein BCPG_02860 [Burkholderia cenocepacia PC184]
gi|169816450|gb|ACA91033.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia MC0-3]
Length = 171
Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + Q+T+ +VV+ATE F + CF C + C L VL A +A
Sbjct: 61 NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L ++++ L S + +
Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145
>gi|225408021|ref|ZP_03761210.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme
DSM 15981]
gi|225042454|gb|EEG52700.1| hypothetical protein CLOSTASPAR_05242 [Clostridium asparagiforme
DSM 15981]
Length = 135
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +RV++ A H D + +IA ISE +L +L+ LV+ ++ +RG
Sbjct: 1 MMISTRGRYALRVMLDLAEHCADGYIPLKEIAHRQDISEKYLEIVLKVLVRNNLLTGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R + T+ ++++ TE S C +CP +C V +K
Sbjct: 61 KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACADEGNTECPRRETCPSRPVWQKLDTLIN 120
Query: 120 DVLTQYSIECLVRNR 134
D L ++E L+++
Sbjct: 121 DYLDGITLEDLLKSP 135
>gi|291562648|emb|CBL41464.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
bacterium SS3/4]
Length = 143
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RVL+ A H D + A ISE +L I++ LVKA ++E VRG
Sbjct: 1 MMVSTKGRYALRVLIDLAEHQTDGYIPLKDTAARQEISEKYLEGIIKILVKAKLLEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + +Q T+ +++ TE S C DCP +GSC + +
Sbjct: 61 KGGGYRLTKAPEQYTVGSILRLTENSMAPVACLEPGSTDCPRMGSCKTLPLWQGLDKVVN 120
Query: 120 DVLTQYSIECLVRNRSS 136
+ L +I LV+N
Sbjct: 121 EYLDGVTIADLVQNGQP 137
>gi|147676569|ref|YP_001210784.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
gi|146272666|dbj|BAF58415.1| predicted transcriptional regulator [Pelotomaculum
thermopropionicum SI]
Length = 151
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R YG+R ++ A + ++ P + Q+AE ISE +L +++ L K G+V +VR
Sbjct: 1 MKFSTRARYGLRAMVDLAQNYASNEPIPLFQVAERQGISEGYLEQLMTYLRKGGLVRSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
G +GG L R +IT ++++ E +C + + C +C + + +
Sbjct: 61 GAQGGYLLAREPSRITAGEIIRCLEGPLSPTDCVSEDDPEFCDRADACVTRLLWERVRES 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
VL S+E L +N I+
Sbjct: 121 VASVLDNTSLEDLCKNADKIR 141
>gi|307947490|ref|ZP_07662823.1| protein Aau3 [Roseibium sp. TrichSKD4]
gi|307769308|gb|EFO28536.1| protein Aau3 [Roseibium sp. TrichSKD4]
Length = 153
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 66/141 (46%), Positives = 100/141 (70%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R LMYCA++ D P+R++ IA + +SE LFKI++ LV A +++T+RGR
Sbjct: 1 MRLTQQTNYAVRALMYCAVNPDKPSRVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L +PA+ I++ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF +
Sbjct: 61 NGGVMLAKPAETISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL SI L +R ++++
Sbjct: 121 VLDTKSIADLSEDRFGMRELL 141
>gi|239908516|ref|YP_002955258.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
gi|239798383|dbj|BAH77372.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
Length = 148
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+++ A+H + P RI IA +S +L K+++ L +AG V + RG
Sbjct: 1 MKLTTRSRYGTRMILDMALHGQNGPVRIKDIAARQGVSVKYLEKLVRDLKEAGFVRSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L +P D I++ D+V+A E + EC CP C V +A A
Sbjct: 61 PRGGHELDKPLDAISVGDIVRALEGDLSLVEC-GDETGPCPRQADCLTRGVWMEAARAMH 119
Query: 120 DVLTQYSIECLVR 132
+ L ++ LV
Sbjct: 120 EKLDSITLADLVA 132
>gi|6224919|gb|AAF06014.1|AF193764_1 Aau3 protein [Sinorhizobium meliloti]
Length = 154
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 87/142 (61%), Positives = 110/142 (77%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + + +RI +IA A +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANGEKLSRIPEIAGAYGVSELFLFKILQPLTRAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61 NGGVRLPRPASEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+I+ LV+ R I +
Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142
>gi|158320700|ref|YP_001513207.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus oremlandii
OhILAs]
gi|158140899|gb|ABW19211.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus
oremlandii OhILAs]
Length = 179
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A+H D P + +AE IS+ +L +++ L KAG+V++VRG
Sbjct: 29 MRLSTKGRYGLKAMFDLALHYGDGPISLKSVAERQSISDHYLEQLIAGLRKAGLVKSVRG 88
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L +IT+ D+++ E ++C C C +V K +
Sbjct: 89 AQGGYMLAENPSKITVGDIIRVLEGPLGPSDCVLEDEPTTCNNAECCVTRTVWEKIRVSI 148
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+V+ +++ ++ + I
Sbjct: 149 SEVIDSITLQNMLDDYEKIN 168
>gi|218663399|ref|ZP_03519329.1| iron-responsive transcriptional regulator [Rhizobium etli IE4771]
Length = 160
Score = 134 bits (338), Expect = 4e-30, Method: Composition-based stats.
Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA ++ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL +PA IT+ DVV+ TE+SF +AECF + +CPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL+ Y+I+ LV+ R I +
Sbjct: 121 AVLSDYTIDDLVKARPQINFLLG 143
>gi|22125232|ref|NP_668655.1| DNA-binding transcriptional regulator IscR [Yersinia pestis KIM 10]
gi|45442337|ref|NP_993876.1| DNA-binding transcriptional regulator IscR [Yersinia pestis biovar
Microtus str. 91001]
gi|170023521|ref|YP_001720026.1| DNA-binding transcriptional regulator IscR [Yersinia
pseudotuberculosis YPIII]
gi|186896270|ref|YP_001873382.1| DNA-binding transcriptional regulator IscR [Yersinia
pseudotuberculosis PB1/+]
gi|21958101|gb|AAM84906.1|AE013736_2 hypothetical protein y1333 [Yersinia pestis KIM 10]
gi|45437201|gb|AAS62753.1| Predicted transcriptional regulator [Yersinia pestis biovar
Microtus str. 91001]
gi|169750055|gb|ACA67573.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
pseudotuberculosis YPIII]
gi|186699296|gb|ACC89925.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
pseudotuberculosis PB1/+]
Length = 185
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C K C C ++ R
Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCLTHTLWRDLSERIS 139
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158
>gi|209519545|ref|ZP_03268338.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
gi|209500024|gb|EEA00087.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
Length = 176
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 79/147 (53%), Gaps = 3/147 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + + I I++A IS+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYALRVLLYLAVRGEGLSTIHDISQAYGISKNHLMKVVQQLGELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ DVV+ATE F + C + C + C L L+ A A
Sbjct: 61 NGGLRLGAQSPALTVGDVVRATESDFALVGCLPDRQGVQRHCVITTQCRLRGALQAANQA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
F L +++I + + S + + G
Sbjct: 121 FLAELDRHTIGEVAQPHSPLAALLGLG 147
>gi|154503925|ref|ZP_02040985.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149]
gi|153795524|gb|EDN77944.1| hypothetical protein RUMGNA_01751 [Ruminococcus gnavus ATCC 29149]
Length = 156
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 75/141 (53%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A H P I+ IAE ISE +L +++ L KAGI++++RG
Sbjct: 1 MKLSTKGRYGLRALIDLAQHGGEGPVSITSIAERQEISERYLEQLMSKLKKAGIIQSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + +++++ +V++A E EC + C +C V ++ ++
Sbjct: 61 AQGGYVLAKELEEVSVGEVLRALEGDLNPVECSGFLLEGGCQAADNCVTKYVWQRINDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ + +++ LV ++K+
Sbjct: 121 NQTVDEMNLKALVEVGENLKE 141
>gi|325265021|ref|ZP_08131748.1| Rrf2 family protein [Clostridium sp. D5]
gi|324029711|gb|EGB90999.1| Rrf2 family protein [Clostridium sp. D5]
Length = 152
Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 71/139 (51%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A H++ P I+ I++ ISE +L +++ L KAG+V+++RG
Sbjct: 1 MKLSTKGRYGLRALIDLAQHSEADPVSITSISDRQGISERYLEQLMSMLKKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + ++I++ DV++A E S EC + C SC V ++ +
Sbjct: 61 AGGGYVLAKDLEEISVGDVLRALEGSLEPVECSGLHPEEGCKAADSCVTKYVWQRINESI 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
+ + + LV +
Sbjct: 121 NQTVDEMKLAQLVEESKKM 139
>gi|50122160|ref|YP_051327.1| DNA-binding transcriptional regulator IscR [Pectobacterium
atrosepticum SCRI1043]
gi|81644317|sp|Q6D258|ISCR_ERWCT RecName: Full=HTH-type transcriptional regulator iscR
gi|49612686|emb|CAG76136.1| putative transcriptional regulator [Pectobacterium atrosepticum
SCRI1043]
Length = 164
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A++I + V+ A +ES C C C ++ R +
Sbjct: 61 PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGRE--SCQGGDRCLTHTLWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L +++ LV N+ +
Sbjct: 119 DFLNNITLDELVNNKEVLN 137
>gi|115351837|ref|YP_773676.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|170703406|ref|ZP_02894182.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
gi|115281825|gb|ABI87342.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
AMMD]
gi|170131682|gb|EDT00234.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
Length = 172
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + ++T+ VV+ATE F + CF C + C L VL A +A
Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATENDFALVGCFSADGGESRGCVIEPQCRLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++ L S + +
Sbjct: 121 FFAELDGHTLGELAEPASPLATLLG 145
>gi|313894415|ref|ZP_07827980.1| putative HTH-type transcriptional regulator IscR [Veillonella sp.
oral taxon 158 str. F0412]
gi|313441239|gb|EFR59666.1| putative HTH-type transcriptional regulator IscR [Veillonella sp.
oral taxon 158 str. F0412]
Length = 138
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A + + I +IAE S+ +L I+ L AG+V++ RG
Sbjct: 1 MKISTKGRYALRILADIAEYGVEKNVPIREIAERQGFSDKYLEGIVSRLSSAGLVKSGRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + + +++ A E+S + C CP+ C + + + F
Sbjct: 61 KYGGYRLVKLPAEYNVYEILYAAEDSIALVSCLEDDVEPCPMFNDCLTAPLWQYLQDEFR 120
Query: 120 DVLTQYSIECLVRNR 134
V+ + S++ ++ ++
Sbjct: 121 HVMERVSLQDVMDHK 135
>gi|290476020|ref|YP_003468917.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Xenorhabdus bovienii SS-2004]
gi|289175350|emb|CBJ82153.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Xenorhabdus bovienii SS-2004]
Length = 164
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I + +V+ A +ES C C C ++ R +
Sbjct: 61 PGGGYLLGRNAGNIFVAEVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S+E LV+N+ +
Sbjct: 119 SFLSSISLEELVKNQEVL 136
>gi|225573521|ref|ZP_03782276.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM
10507]
gi|225039118|gb|EEG49364.1| hypothetical protein RUMHYD_01714 [Blautia hydrogenotrophica DSM
10507]
Length = 142
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 69/142 (48%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A+H++ P I IA IS +L +++ + +AG+V +VRG
Sbjct: 1 MKLSTKGRYGLRAMVDLAVHSETGPVSIQSIANRQDISVSYLEQLVGKMRRAGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
GG RL + +I++ DV++A E + +C + C C V +K +
Sbjct: 61 ATGGYRLAKSPSEISVGDVLRALEGTLDAVDCPGNLEVSTCKASQKCVTKYVWKKINESI 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+ IE LV+ + +
Sbjct: 121 SQAVDTIMIEQLVQESKKVNGL 142
>gi|149908844|ref|ZP_01897504.1| Rrf2 family protein [Moritella sp. PE36]
gi|149808118|gb|EDM68059.1| Rrf2 family protein [Moritella sp. PE36]
Length = 157
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H D P +++I+E IS +L ++ L + +V + RG
Sbjct: 1 MRLTSKGRYAVTAMIDLALHADMKPVPLAEISERQSISLSYLEQLFSRLRRKNLVASARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L I++ ++ A +E+ +C C C S+
Sbjct: 61 PGGGYKLGMLPGDISVGMIIDAVDENVKATKC--DSSGGCNDGKRCLTHSLWDDLSKRIS 118
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
D L S+ L+ N IK+I N
Sbjct: 119 DFLDNISLADLMTNN-EIKQIVN 140
>gi|86356384|ref|YP_468276.1| iron-responsive transcriptional regulator [Rhizobium etli CFN 42]
gi|190890437|ref|YP_001976979.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
CIAT 652]
gi|86280486|gb|ABC89549.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
CFN 42]
gi|190695716|gb|ACE89801.1| rhizobial iron transcriptional regulator protein [Rhizobium etli
CIAT 652]
Length = 160
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL +PA IT+ DVV+ TE+SF +AECF + +CPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL++Y+I+ LV+ R I +
Sbjct: 121 AVLSEYTIDDLVKARPQINFLLG 143
>gi|311695841|gb|ADP98714.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15]
Length = 145
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL+Y A+ D I +IA++ IS+ L K++ L K G +ET+RG+
Sbjct: 1 MHITRYTDYSLRVLIYLAVQGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG+RL R I+I +V+ TE+ + ECF+S K C + CGL S+ +AL AF +
Sbjct: 61 KGGMRLHRSPSDISIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119
Query: 121 VLTQYSIECLVRN--RSSIKKIF 141
VL +Y++ +++ R + ++
Sbjct: 120 VLDKYTLADVIQEQHRPQLLRLL 142
>gi|302672152|ref|YP_003832112.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus
B316]
gi|302396625|gb|ADL35530.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus
B316]
Length = 135
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+RV+ A H N + IA I+ +L +I+ L KAG +E++RG
Sbjct: 1 MRISTKGRYGLRVMTDLAAHYNGEYISLKDIAVRLGITVKYLEQIVTALNKAGYLESMRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + + + D+++ E +F EC A +CPL SC + + +
Sbjct: 61 TNGGHRLAKDPSEYVVGDILRVMEGNFSPVECAAEGMSECPLSDSCASLNFWKGLDDVVN 120
Query: 120 DVLTQYSIECLVRNR 134
+ Y+++ LV+ +
Sbjct: 121 QYIDSYTLDQLVKQK 135
>gi|37527164|ref|NP_930508.1| DNA-binding transcriptional regulator IscR [Photorhabdus
luminescens subsp. laumondii TTO1]
gi|81833923|sp|Q7N223|ISCR_PHOLL RecName: Full=HTH-type transcriptional regulator iscR
gi|36786598|emb|CAE15658.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 164
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + +V+ A +ES C C C ++ R +
Sbjct: 61 PGGGYLLGKDASEIVVAEVIFAVDESVDATRCQGREG--CQGGDRCLTHALWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S+E LV N+ +
Sbjct: 119 GFLSSISLEELVNNQEVL 136
>gi|238758817|ref|ZP_04619990.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC
35236]
gi|238702925|gb|EEP95469.1| HTH-type transcriptional regulator iscR [Yersinia aldovae ATCC
35236]
Length = 185
Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C K C C ++ R
Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158
>gi|85714888|ref|ZP_01045874.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A]
gi|85698374|gb|EAQ36245.1| hypothetical protein NB311A_02034 [Nitrobacter sp. Nb-311A]
Length = 150
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 80/142 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +RVLMY A+ +D + I++IA + +SE L K++ L AG +ETVRGR
Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYDVSEAHLMKVVHQLGVAGYIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA+ I + +V++ TE + C C + SC L L +A AF +
Sbjct: 61 GGGLRLAKPAEAIRLAEVIRTTEPDMAIVSCLKPLNAPCMINPSCVLKRALERAQQAFME 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y++ L R+ + +
Sbjct: 121 VLEGYTLADLTAPRARLSSLLG 142
>gi|331005918|ref|ZP_08329266.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989]
gi|330420274|gb|EGG94592.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC1989]
Length = 173
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+D P +S+I++ IS +L ++ L KA +V ++RG
Sbjct: 1 MRLTTKGRYAVTAMLDLAIHSDKGPVSLSEISKRQEISLSYLEQLFSKLRKADLVASIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R D I I +V A ES C K +C C + +
Sbjct: 61 PGGGYQLGRTLDTIYIAQIVDAVNESIDATNC--GGKGNCQQGEVCLTHHLWSDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
L S+ LV R
Sbjct: 119 QFLNSISLAKLVERRD 134
>gi|271501586|ref|YP_003334612.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii
Ech586]
gi|270345141|gb|ACZ77906.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
Ech586]
Length = 164
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + +I + V+ A +ES C K C C ++ R +
Sbjct: 61 PGGGYLLGKDSAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L +++ LV N+ +
Sbjct: 119 EFLNNITLDELVNNKEIL 136
>gi|164686973|ref|ZP_02211001.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM
16795]
gi|164603858|gb|EDQ97323.1| hypothetical protein CLOBAR_00599 [Clostridium bartlettii DSM
16795]
Length = 147
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + Y +R+++ AI++D RI IA+ IS+ +L +I+ L +AG +++VRG
Sbjct: 4 LKISTKGRYALRLMIDLAINDDGKCIRIRDIAKRQEISDKYLEQIISILNRAGYIKSVRG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + + T+ +++ TE S C C C + +K A
Sbjct: 64 PQGGHRLAKHPSEYTVGMILRLTEGSLSPVACLDDEVNQCTRQAQCATLELWKKLDKAIS 123
Query: 120 DVLTQYSIECLVR 132
DV+ ++E LV+
Sbjct: 124 DVVDNVTLEDLVQ 136
>gi|242240170|ref|YP_002988351.1| DNA-binding transcriptional regulator IscR [Dickeya dadantii
Ech703]
gi|242132227|gb|ACS86529.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
Ech703]
Length = 164
Score = 133 bits (336), Expect = 5e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + V+ A +ES C K C C ++ R +
Sbjct: 61 PGGGYLLGKDASEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L +++ LV N+ +
Sbjct: 119 EFLNNITLDELVNNKEIL 136
>gi|308050471|ref|YP_003914037.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica
DSM 9799]
gi|307632661|gb|ADN76963.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica
DSM 9799]
Length = 153
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAILDVALHSPEGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA +I + VV A +ES C K +C C S+ +
Sbjct: 61 PGGGYLLGRPAAEIAVGMVVHAVDESVDATRCHG--KSNCQGGARCLTHSLWGDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L S+ L+ NR
Sbjct: 119 SFLNGISLADLMANRD 134
>gi|327190570|gb|EGE57662.1| iron-responsive transcriptional regulator [Rhizobium etli CNPAF512]
Length = 160
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL RPA IT+ DVV+ TE+SF +AECF + +CPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGRPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL++Y+I+ LV+ R I +
Sbjct: 121 AVLSEYTIDDLVKARPQINFLLG 143
>gi|167765593|ref|ZP_02437657.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1]
gi|317498547|ref|ZP_07956841.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
gi|167712778|gb|EDS23357.1| hypothetical protein CLOSS21_00087 [Clostridium sp. SS2/1]
gi|316894240|gb|EFV16428.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
Length = 149
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A+++ D P IS IAE IS +L ++L L KAGI++++RG
Sbjct: 1 MKLSTKGRYGLRAMVDIAVYSQDSPVPISAIAERQNISVRYLEQLLPKLKKAGIIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
+GG L + I+ D+++ E +C F C C +V ++ ++
Sbjct: 61 AQGGYMLDKDPKDISAGDILRTLEGDLTPIDCAAFTGDTSTCSGTKFCVTKTVWKRINDS 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ +++ L+ I
Sbjct: 121 VQQAVDSITLQELMEESIEIH 141
>gi|121999179|ref|YP_001003966.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
halophila SL1]
gi|121590584|gb|ABM63164.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
halophila SL1]
Length = 152
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 54/142 (38%), Positives = 83/142 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +DY +RVL++ I IAE IS L K++ L G VETVRG+
Sbjct: 1 MRLTRHSDYALRVLLFLGAAQGELVTIGAIAERFEISRNHLMKVVNRLAAHGFVETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+RL +P + I + ++++ TEE F + ECF C + G+C + +VL +AL+AF
Sbjct: 61 RGGIRLAQPPETIPLGELLRRTEEDFTLVECFREEDQRCRIEGTCAVRAVLDEALHAFLA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++ L+ NR ++ N
Sbjct: 121 VLDRYTLADLLHNRGALAVDLN 142
>gi|167623502|ref|YP_001673796.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis
HAW-EB4]
gi|167353524|gb|ABZ76137.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
halifaxensis HAW-EB4]
Length = 153
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I++ VV+A +ES C +C C S+ N
Sbjct: 61 PGGGYRLGTDACDISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSNQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 119 DFLNGISLAGLMHKRD 134
>gi|241203174|ref|YP_002974270.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857064|gb|ACS54731.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 160
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL +PA I++ DVV+ TE+SF +AECF DCPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVDCPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL++YSI+ LV+ R I +
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143
>gi|117926344|ref|YP_866961.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
gi|117610100|gb|ABK45555.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
MC-1]
Length = 157
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ A H + P +++I+ IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTAMLDLAQHANRGPVTLAEISNRQQISLSYLEQLFAKLRRGGLVGSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A+QI++ +++A +E C C C + + +
Sbjct: 61 PGGGYQLDRGAEQISVAAIIRAVDEPIHATSCKDKGTEGCRRDTRCITHDLWARLGEHIY 120
Query: 120 DVLTQYSIECLVRNRSSI 137
L S+ L+R+ S++
Sbjct: 121 HYLESVSLAQLMRDGSAL 138
>gi|325579030|ref|ZP_08148986.1| iron-sulfur cluster assembly transcription regulator IscR
[Haemophilus parainfluenzae ATCC 33392]
gi|325159265|gb|EGC71399.1| iron-sulfur cluster assembly transcription regulator IscR
[Haemophilus parainfluenzae ATCC 33392]
Length = 151
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALHAGTNPVCLADISERQNISLSYLEQLFAKLRRGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL ADQI+I V+ A E+ V C +C C S+ + +
Sbjct: 61 PGGGYRLALSADQISIGMVISAVNENIDVTRCLGKG--NCKGGVECLTHSLWQDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L + ++ LV ++ K
Sbjct: 119 DFLDEITLAELVEKKTGKHK 138
>gi|295102114|emb|CBK99659.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
prausnitzii L2-6]
Length = 149
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG
Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQQLSLKYLEQIVTPLARVGLVKSERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + T ++++A E S C S +CP+ C +
Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSDQCFTLPFWAGLDDVIN 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ ++E L ++ ++K+
Sbjct: 121 QYIDSVTLEQLAQSLPAVKE 140
>gi|134094873|ref|YP_001099948.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
gi|133738776|emb|CAL61823.1| HTH-type transcriptional regulator nsrR [Herminiimonas
arsenicoxydans]
Length = 159
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 75/136 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R LMY ++ D I IA+ IS+ L K++ L +G+VETVRGR
Sbjct: 1 MRLTSYTDYALRTLMYLGMNRDNLVTIQDIADLHGISKNHLMKVVHQLGLSGMVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L I I +VV+ TE FF+AECF C SC L VL A+ A+
Sbjct: 61 NGGLKLGHEPADINIGEVVRNTETDFFMAECFDPASNACVYAPSCILKGVLNDAIEAYLA 120
Query: 121 VLTQYSIECLVRNRSS 136
VL ++ L+ +++
Sbjct: 121 VLNNVTLADLIAQKNA 136
>gi|291534433|emb|CBL07545.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis
M50/1]
gi|291541272|emb|CBL14383.1| transcriptional regulator, BadM/Rrf2 family [Roseburia intestinalis
XB6B4]
Length = 143
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A++N P + IA IS+ +L +I+ L KA V+++RG
Sbjct: 1 MRISTKGRYALRLMLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + ++ T+ +++ TE S C C + C V +K A
Sbjct: 61 AQGGYILTKRPEEYTVGMILRLTEGSLAPVACVEDED-TCDKMNDCATVLVWKKMNEAIN 119
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++ LV
Sbjct: 120 QVVDSITLADLVDYERQ 136
>gi|206560284|ref|YP_002231048.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
gi|198036325|emb|CAR52221.1| putative DNA-binding protein [Burkholderia cenocepacia J2315]
Length = 172
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL + Q+T+ VV+ATE F + CF+ + C + C L VL A +A
Sbjct: 61 NGGLRLFADSLQLTVGQVVRATENDFALVGCFSPDDSESRGCVIEPQCRLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L S + +
Sbjct: 121 FFAELDRHTIGELAEPASPLVALLG 145
>gi|227112705|ref|ZP_03826361.1| DNA-binding transcriptional regulator IscR [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
gi|227329514|ref|ZP_03833538.1| DNA-binding transcriptional regulator IscR [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 164
Score = 133 bits (336), Expect = 6e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A++I + V+ A +ES C C C ++ R +
Sbjct: 61 PGGGYLLGKNANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
D L +++ LV N+ +
Sbjct: 119 DFLNNITLDELVNNKEVL 136
>gi|145638712|ref|ZP_01794321.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII]
gi|145272307|gb|EDK12215.1| hypothetical protein CGSHiII_08356 [Haemophilus influenzae PittII]
gi|309750202|gb|ADO80186.1| transcriptional regulator IscR [Haemophilus influenzae R2866]
Length = 150
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNTDGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C + +
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|325291641|ref|YP_004277505.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3]
gi|325059494|gb|ADY63185.1| iron-responsive transcriptional regulator [Agrobacterium sp. H13-3]
Length = 156
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 87/142 (61%), Positives = 109/142 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGKLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +PA++I++ DVVK TE+SF +AECF ++CPLV SCGL S LRKALNAFFD
Sbjct: 61 NGGVRLGKPAEKISLFDVVKVTEDSFAMAECFEDGAVECPLVDSCGLNSALRKALNAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI+ LV+ R I +
Sbjct: 121 VLAEYSIDDLVKARPQINFLLG 142
>gi|307132078|ref|YP_003884094.1| Fe-S cluster-containing transcription factor [Dickeya dadantii
3937]
gi|306529607|gb|ADM99537.1| Fe-S cluster-containing transcription factor [Dickeya dadantii
3937]
Length = 164
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I + V+ A +ES C K C C ++ R +
Sbjct: 61 PGGGYLLGKDAAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L +++ LV N+ +
Sbjct: 119 EFLNNITLDELVNNKEIL 136
>gi|222055077|ref|YP_002537439.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221564366|gb|ACM20338.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 141
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R Y +R ++ A+++ P + +IA+ I +L ++ L GIV ++RG
Sbjct: 1 MRLSTRAQYAVRAMVDLALYSTSKPVSLKEIAQREEIPLSYLEQLFFRLKNGGIVTSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R + I + ++V EE C C + C ++ +
Sbjct: 61 PGGGYILARESSLIKVGEIVVTVEEPLSPVACMDEGSTGCSRISQCVTHNIWKGLGEKIR 120
Query: 120 DVLTQYSIECLVRN-RSSIKK 139
L ++E L + R +++
Sbjct: 121 GFLDGITLEDLAQEARRNLEA 141
>gi|291547327|emb|CBL20435.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
SR1/5]
Length = 144
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R+++ A + P R+ +A+ IS+ +L +I+ L KAG V +VRG
Sbjct: 1 MRISTRGRYALRLMLDLATNYTGKPIRLKDVAKRQEISDKYLEQIISILNKAGFVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + D+ TI +++ TE S EC + C +C + +K +A
Sbjct: 61 PQGGYALQQTPDKYTIGMILRLTEGSLSPVECLDDNGAICDREENCVTQILWKKLDDAIK 120
Query: 120 DVLTQYSIECLVR 132
V+ ++E L+
Sbjct: 121 GVVDHITLEDLMN 133
>gi|261820558|ref|YP_003258664.1| IscR family transcriptional regulator [Pectobacterium wasabiae
WPP163]
gi|261604571|gb|ACX87057.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
wasabiae WPP163]
Length = 164
Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A++I + V+ A +ES C C C ++ R +
Sbjct: 61 PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L +++ LV N+ +
Sbjct: 119 DFLNNITLDELVNNKEVLN 137
>gi|148825338|ref|YP_001290091.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE]
gi|260582529|ref|ZP_05850319.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
influenzae NT127]
gi|148715498|gb|ABQ97708.1| hypothetical protein CGSHiEE_01110 [Haemophilus influenzae PittEE]
gi|260094340|gb|EEW78238.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
influenzae NT127]
Length = 150
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C + +
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|308187781|ref|YP_003931912.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
gi|308058291|gb|ADO10463.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
Length = 165
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +D I++ +V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKASDTISVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
D L ++ LV N+ +
Sbjct: 119 DFLNNITLAELVNNQEIL 136
>gi|194014188|ref|ZP_03052805.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC
7061]
gi|194013214|gb|EDW22779.1| HTH-type transcriptional regulator NsrR [Bacillus pumilus ATCC
7061]
Length = 143
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+ +RVL+Y A N+ + I QIA+ IS+ L K++ L K G VET+RG
Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYGISKNHLTKVIYHLGKRGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + + I I +VV+ TE+ + ECF K C + C L VL +AL A+
Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALTAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y+++ L +N+ +++++
Sbjct: 121 RVLDKYTLKDLTQNKDALRELL 142
>gi|238795105|ref|ZP_04638696.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC
29909]
gi|238725553|gb|EEQ17116.1| HTH-type transcriptional regulator iscR [Yersinia intermedia ATCC
29909]
Length = 185
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 22 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 81
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C K C C ++ R
Sbjct: 82 PGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERIS 139
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 140 SFLNNITLAELVNNQDILE 158
>gi|212634528|ref|YP_002311053.1| hypothetical protein swp_1693 [Shewanella piezotolerans WP3]
gi|212556012|gb|ACJ28466.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 153
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTDGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A +I++ VV+A +ES C +C C S+ +
Sbjct: 61 PGGGYRLGTDACEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSSQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+R R
Sbjct: 119 DFLNGISLAGLMRKRD 134
>gi|197106638|ref|YP_002132015.1| conserved predicted transcriptional regulator [Phenylobacterium
zucineum HLK1]
gi|196480058|gb|ACG79586.1| conserved predicted transcriptional regulator [Phenylobacterium
zucineum HLK1]
Length = 148
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD+ +RVLMY A+H D I++IA IS+ L K++ L +AG +ETVRG+
Sbjct: 1 MRLTGYTDFALRVLMYIAVHPDRRPTIAEIAAGYGISKNHLMKVVFDLGRAGYIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA+ I + ++V+ TE +A C C + +C L VL +A AF D
Sbjct: 61 NGGLRLARPAESIGVGELVRRTEGDMALAPCLGRAD-GCVITPACRLKGVLVEARTAFMD 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y+I L R S++ +
Sbjct: 120 VLDRYTIADLARQPESLRALLG 141
>gi|149375017|ref|ZP_01892790.1| rrf2 family protein [Marinobacter algicola DG893]
gi|149360906|gb|EDM49357.1| rrf2 family protein [Marinobacter algicola DG893]
Length = 165
Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H D P ++ I+ IS +L ++ L + +V ++RG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRHKLVTSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R AD + I +VV A ES C +K DC C + +
Sbjct: 61 PGGGYRLSREADSVFIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
L+ S+ L+R R
Sbjct: 119 QFLSDISLGDLMRKRE 134
>gi|15602182|ref|NP_245254.1| hypothetical protein PM0317 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12720554|gb|AAK02401.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
Length = 154
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P +S I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALNSNRGPVSLSDISERQHISLSYLEQLFAKLRRHGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA++I++ V+ A E+ V C DC C S+ ++
Sbjct: 61 PGGGYQLGLPANRISVGMVINAVNENIDVTRCLGRG--DCQEGTECLTHSLWKELSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++E LV +
Sbjct: 119 AFLNEITLEELVEKNRQKRA 138
>gi|150390216|ref|YP_001320265.1| BadM/Rrf2 family transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149950078|gb|ABR48606.1| transcriptional regulator, BadM/Rrf2 family [Alkaliphilus
metalliredigens QYMF]
Length = 149
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + AIH + P + IAE IS+ +L +++ L KAG+V++VRG
Sbjct: 1 MKLSTKGRYGLKAMFDLAIHQGEGPIPLKHIAERQKISDHYLEQLIASLRKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L D++ + ++++ E +EC C C + K +
Sbjct: 61 AQGGYMLANSPDKVVVGEIIRVLEGPLGPSECVLEEDPTACARADYCVTRVIWEKIRVSI 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
DV+ +++ +V + +
Sbjct: 121 SDVIDNITLQDMVDDYHKLN 140
>gi|157691675|ref|YP_001486137.1| transcriptional regulator [Bacillus pumilus SAFR-032]
gi|157680433|gb|ABV61577.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 143
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+ +RVL+Y A N+ + I QIA+ IS+ L K++ L K G VET+RG
Sbjct: 1 MKLTNYTDFSLRVLIYLASRENNELSNIQQIADVYDISKNHLTKVIYHLGKRGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + + I I +VV+ TE+ + ECF K C + C L VL +AL+A+
Sbjct: 61 RNGGIRLGKSPESINIGEVVRYTEDDLVMVECFDPRKNSCIISPICSLKHVLHEALSAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL QY+++ L +N+ +++++
Sbjct: 121 RVLDQYTLKDLTQNKDALRELL 142
>gi|253689401|ref|YP_003018591.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259493875|sp|C6DBJ2|ISCR_PECCP RecName: Full=HTH-type transcriptional regulator iscR
gi|251755979|gb|ACT14055.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 164
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A++I + V+ A +ES C C C ++ R +
Sbjct: 61 PGGGYLLGKSANEIAVGMVISAVDESVDATRCQGREG--CQGGDRCLTHTLWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
D L +++ LV N+ +
Sbjct: 119 DFLNNITLDELVNNKEVL 136
>gi|220935228|ref|YP_002514127.1| iron-sulphur cluster assembly transcription factor IscR
[Thioalkalivibrio sp. HL-EbGR7]
gi|219996538|gb|ACL73140.1| iron-sulphur cluster assembly transcription factor IscR
[Thioalkalivibrio sp. HL-EbGR7]
Length = 162
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIHN+ P ++ I+ IS +L ++ L K G+V + RG
Sbjct: 1 MRLTTKGRYAVTAMLDLAIHNEQGPISLADISHRQGISLSYLEQLFARLRKQGLVVSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPAD+ I DV+ A +E C DC C + +
Sbjct: 61 PGGGYSLSRPADKTAIADVIAAVDEKVDTTRC--GGAADCQNNQRCLTHDLWSDLSDQIR 118
Query: 120 DVLTQYSIECLVRNR 134
LT ++ ++
Sbjct: 119 QFLTNITLADVMARN 133
>gi|13516334|emb|CAC35510.1| rhizobial iron regulator [Rhizobium leguminosarum bv. viciae]
Length = 160
Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats.
Identities = 85/143 (59%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA ++ + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL +PA I++ DVV+ TE+SF +AECF +CPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL++YSI+ LV+ R I +
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143
>gi|325661219|ref|ZP_08149846.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472726|gb|EGC75937.1| hypothetical protein HMPREF0490_00579 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 180
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ L+ + YG+R L+ A +++ P IS IA ISE +L +++ L KAG+++++RG
Sbjct: 29 LKLSTKGRYGLRALIDLAQYSEIEPVSISSIAARQGISERYLEQLMAKLKKAGLIKSIRG 88
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L R + I++ DV++A E + EC + C G C V +K +
Sbjct: 89 AGGGYVLAREVESISVGDVLRALEGNLEPVECSGLHPEEGCEAAGGCVTKYVWQKINESI 148
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ + ++ LV ++K
Sbjct: 149 NQTVDEIKLDRLVEESKAMK 168
>gi|74317181|ref|YP_314921.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
denitrificans ATCC 25259]
gi|74056676|gb|AAZ97116.1| Iron-sulphur cluster assembly transcription factor IscR
[Thiobacillus denitrificans ATCC 25259]
Length = 153
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I+E IS +L ++ L + +VE+VRG
Sbjct: 1 MRLTTKGRFAVTAMLDLALRGGKNPVTLAGISERQDISLSYLEQLFSRLRRHALVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +P +++ D+++A +E +C K +C C + + +
Sbjct: 61 PGGGYYLAKPLADVSVADIIRAVDEPIDATQC--GGKENCHDEHRCLTHDLWVGLNSHIY 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L ++ LV + K+
Sbjct: 119 DYLDNVTLASLVAKQDECKE 138
>gi|157376007|ref|YP_001474607.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis
HAW-EB3]
gi|157318381|gb|ABV37479.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis
HAW-EB3]
Length = 153
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A +I++ VV+A +ES C +C C S+
Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 119 DFLNGISLAGLMNKRD 134
>gi|77165125|ref|YP_343650.1| Iron-sulphur cluster assembly transcription factor IscR
[Nitrosococcus oceani ATCC 19707]
gi|254434832|ref|ZP_05048340.1| iron-sulfur cluster assembly transcription factor IscR
[Nitrosococcus oceani AFC27]
gi|76883439|gb|ABA58120.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
ATCC 19707]
gi|207091165|gb|EDZ68436.1| iron-sulfur cluster assembly transcription factor IscR
[Nitrosococcus oceani AFC27]
Length = 166
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+ IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A +I+I+DV+ A +E+ C +C C + +
Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRC--GGLKNCQENQRCLTHDLWEDLSRQIY 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L + ++ LV+ R IKK+
Sbjct: 119 EFLARITLGELVQ-RDDIKKV 138
>gi|225629057|ref|ZP_03787090.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str.
Cudo]
gi|225615553|gb|EEH12602.1| Transcriptional regulator, Rrf2 family protein [Brucella ceti str.
Cudo]
Length = 180
Score = 133 bits (335), Expect = 9e-30, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 28 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 88 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 148 VLMKYSIADLVKARPNVRLLLG 169
>gi|163749695|ref|ZP_02156941.1| Rrf2 family protein [Shewanella benthica KT99]
gi|161330508|gb|EDQ01466.1| Rrf2 family protein [Shewanella benthica KT99]
Length = 167
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L + G+V +VRG
Sbjct: 15 MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRHGLVSSVRG 74
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I++ VV+A +ES V C DC C S+
Sbjct: 75 PGGGYRLGADAVDISVGMVVRAVDESVDVTRCKGQG--DCQNGTRCLTHSLWGDLSKQIS 132
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 133 DFLNGISLAGLMNKRD 148
>gi|107028973|ref|YP_626068.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia AU 1054]
gi|116689869|ref|YP_835492.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia HI2424]
gi|105898137|gb|ABF81095.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia AU 1054]
gi|116647958|gb|ABK08599.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia HI2424]
Length = 171
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 84/145 (57%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL + Q+T+ +VV+ATE F + CF++ ++ C + C L VL A +A
Sbjct: 61 NGGLRLFADSLQLTVGEVVRATENDFALVGCFSADGVESRGCVIEPQCRLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L ++++ L S + +
Sbjct: 121 FFAELDRHTLGELAEPASPLASLLG 145
>gi|209547997|ref|YP_002279914.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209533753|gb|ACI53688.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 160
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 86/143 (60%), Positives = 109/143 (76%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
GGVRL +PA IT+ DVV+ TE+SF +AECF ++CPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGVVECPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL++YSI+ LV+ R I +
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143
>gi|295401854|ref|ZP_06811818.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|312111004|ref|YP_003989320.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y4.1MC1]
gi|294976108|gb|EFG51722.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|311216105|gb|ADP74709.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y4.1MC1]
Length = 156
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT T+Y +RVL++ A+ I +I++ ISE L KI+ L K G +ET+RG
Sbjct: 1 MQLTNYTEYALRVLLFLGALEPGEKTNIKEISQTFSISENHLSKIVYELGKLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + ++I I VV+ TEE+ + ECFASH C L C L SVL +AL AF
Sbjct: 61 RNGGIRLAKQPEEINIGAVVRKTEENLSLVECFASHGNHCVLTPVCQLKSVLHEALEAFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL Y++ L+ N+ S++ IF+
Sbjct: 121 RVLDAYALSDLLANKQSLQAIFS 143
>gi|225174416|ref|ZP_03728415.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
alkaliphilus AHT 1]
gi|225170201|gb|EEG78996.1| transcriptional regulator, BadM/Rrf2 family [Dethiobacter
alkaliphilus AHT 1]
Length = 140
Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +YG+R + A+ P + +IA+ IS FL +I PL +AG++++VRG
Sbjct: 1 MKVSAKGEYGVRAMAILALEFRAGPIPLREIAKREGISYQFLEQIFLPLRRAGLIDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L RP D+I + D+++A E EC D C +C + K +
Sbjct: 61 AKGGYVLARPPDEIKVGDILRALEGPIAPVECVGEGNTDACGRSAACLTRGIWEKLRDTM 120
Query: 119 FDVLTQYSIECLVR 132
+VL ++ +++
Sbjct: 121 SEVLNDITLADVIK 134
>gi|302389692|ref|YP_003825513.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
oceani DSM 16646]
gi|302200320|gb|ADL07890.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
oceani DSM 16646]
Length = 150
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + AI+ + P + IA+ ISE +L +++ L KAG+V++VRG
Sbjct: 1 MKLSTKGRYGLKAMFDLAINYGEGPIPLKSIADRQNISEHYLEQLIMILRKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF 118
+GG L + +IT+ DV++ E + +C +C +C + V K ++
Sbjct: 61 AQGGYMLAKKPAEITVGDVLRVLEGPIGLVDCVLEQDPLECDKAENCIMRIVWEKIRDSM 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ +++ + K
Sbjct: 121 IAAMDSITLQDMCNEAEKRKA 141
>gi|110800338|ref|YP_696471.1| rrf2 family protein [Clostridium perfringens ATCC 13124]
gi|169343592|ref|ZP_02864591.1| rrf2 family protein [Clostridium perfringens C str. JGS1495]
gi|182625647|ref|ZP_02953416.1| rrf2 family protein [Clostridium perfringens D str. JGS1721]
gi|110674985|gb|ABG83972.1| rrf2 family protein [Clostridium perfringens ATCC 13124]
gi|169298152|gb|EDS80242.1| rrf2 family protein [Clostridium perfringens C str. JGS1495]
gi|177909049|gb|EDT71524.1| rrf2 family protein [Clostridium perfringens D str. JGS1721]
Length = 153
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AIH P I I++ ISE +L ++ L KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+ D+++ E +++C + C V C + +K +
Sbjct: 61 AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+V +++ +V + ++K+
Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138
>gi|118589790|ref|ZP_01547195.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614]
gi|118437876|gb|EAV44512.1| hypothetical protein SIAM614_05100 [Stappia aggregata IAM 12614]
Length = 154
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 66/141 (46%), Positives = 100/141 (70%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R LMYCA++ D P++++ IA + +SE LFKI++ LV A +++T+RGR
Sbjct: 1 MRLTQQTNYAVRALMYCAVNPDKPSKVADIAASFDMSETHLFKIMKVLVDANLIKTIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L RPA++I++ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF +
Sbjct: 61 NGGVMLARPAEKISVGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFME 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL SI L +R ++ +
Sbjct: 121 VLDGKSIADLSEDRFGMRDLL 141
>gi|225018254|ref|ZP_03707446.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum
DSM 5476]
gi|224948951|gb|EEG30160.1| hypothetical protein CLOSTMETH_02192 [Clostridium methylpentosum
DSM 5476]
Length = 145
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R++ A H N + +IA+ IS+ +L +I+ L AG+V++VRG
Sbjct: 1 MKISTKGRYGLRLMFELAYHYNKGLVPLKEIAKRQEISDKYLEQIIMRLNHAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L P ++ T+ +V+ E S V EC ++ ++C + SC + K A
Sbjct: 61 AQGGYMLAAPPEETTVEEVLTVLEGSLCVVECIGANGVECKNINSCPTYGIWSKINQAIQ 120
Query: 120 DVLTQYSIECLVRNR 134
V++ ++ +V +
Sbjct: 121 QVVSNITLADMVEDY 135
>gi|291543838|emb|CBL16947.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
18P13]
Length = 142
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H + ++ IAE ISE +L I+ L K G+V+ +RG
Sbjct: 1 MMISTKGRYALRVMIDLAEHNSGGYVPLADIAERQEISEKYLESIVSMLSKKGLVDALRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R DQ T+ D++ TE S C C C + ++
Sbjct: 61 KGGGYRLNRAPDQYTVADILYVTEGSMAPVACLEPGAKTCDRAAYCRTLDMWKRLYELIT 120
Query: 120 DVLTQYSIECLVRNRS 135
+ +I L+ ++S
Sbjct: 121 QFFSGITIADLIADKS 136
>gi|75674940|ref|YP_317361.1| hypothetical protein Nwi_0743 [Nitrobacter winogradskyi Nb-255]
gi|74419810|gb|ABA04009.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
winogradskyi Nb-255]
Length = 150
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 77/142 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +RVLMY A+ +D + I++IA + +SE L K++ L AG +ETVRGR
Sbjct: 1 MRLTTYSDYALRVLMYLALKSDGLSTIAEIAGSYNVSEAHLMKVVHQLGVAGYIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RP + I + +V++ TE V C C + C L + +A AF D
Sbjct: 61 GGGLRLARPVEAIGLAEVIRMTEPDMAVVSCLKPLNAPCKINPCCVLKRAMERAQQAFMD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y++ LV + +
Sbjct: 121 VLEGYTLADLVVPSGRLSNLLG 142
>gi|167750161|ref|ZP_02422288.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702]
gi|167656904|gb|EDS01034.1| hypothetical protein EUBSIR_01130 [Eubacterium siraeum DSM 15702]
gi|291531912|emb|CBK97497.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum
70/3]
gi|291556686|emb|CBL33803.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium siraeum
V10Sc8a]
Length = 145
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L+ A H D + +IA+ +S+ +L +I+ L K+ I+ T RG
Sbjct: 1 MKISTKGRYVLRMLIDLAEHQGDGYIPLKEIAQRQGVSKKYLEQIVPMLNKSDILRTNRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + D+ T+ D+++ TE S C S ++C C S+ +
Sbjct: 61 FQGGYRLAKAPDKYTVGDILRLTEGSLAPVACLESGVVECDRSEHCATLSLWQGLYKVIN 120
Query: 120 DVLTQYSIECLVR 132
+ L +++ L+
Sbjct: 121 EYLDSVTLQDLID 133
>gi|150395554|ref|YP_001326021.1| iron-responsive transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150027069|gb|ABR59186.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
WSM419]
Length = 154
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 87/142 (61%), Positives = 109/142 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPL +AG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANGQKLSRIPEIARAYGVSELFLFKILQPLTRAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RPA +IT+ DVVK TE+SF +AECF + +IDCPLV SCGL + LRKALNAFF+
Sbjct: 61 NGGVRLPRPAAEITLFDVVKVTEDSFAMAECFEAGEIDCPLVDSCGLNAALRKALNAFFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+I+ LV+ R I +
Sbjct: 121 VLQGYTIDDLVKARPQINFLLG 142
>gi|300724150|ref|YP_003713467.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Xenorhabdus nematophila ATCC 19061]
gi|81322241|sp|Q8GLE9|ISCR_XENNA RecName: Full=HTH-type transcriptional regulator iscR
gi|23345066|gb|AAN17744.1| putative iron-sulfur cluster regulator protein IscR [Xenorhabdus
nematophila]
gi|297630684|emb|CBJ91349.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Xenorhabdus nematophila ATCC 19061]
Length = 164
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 66/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +I + +V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGRDAGRIFVAEVISAVDESVDATRC--QGKEGCQGGDRCLTHALWRDLSERIT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L S+E LV+N+ +
Sbjct: 119 SFLGSISLEELVKNQEVL 136
>gi|237817129|ref|ZP_04596121.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
str. 2308 A]
gi|237787942|gb|EEP62158.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
str. 2308 A]
Length = 180
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 28 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 87
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 88 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 147
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 148 VLMKYSIADLVKARPNVRLLLG 169
>gi|317471927|ref|ZP_07931261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
gi|316900593|gb|EFV22573.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
Length = 145
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A HN + +++ IS +L +I++ L G ++++RG
Sbjct: 1 MKISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L + + TI DV++ TE S C C C +
Sbjct: 61 PRGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVR 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L +I+ ++ +R+++K
Sbjct: 121 DYLGSVTIQDIL-DRAALK 138
>gi|255528018|ref|ZP_05394855.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
carboxidivorans P7]
gi|296185461|ref|ZP_06853871.1| Rrf2 family protein (putative transcriptional regulator)
[Clostridium carboxidivorans P7]
gi|255508287|gb|EET84690.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
carboxidivorans P7]
gi|296050295|gb|EFG89719.1| Rrf2 family protein (putative transcriptional regulator)
[Clostridium carboxidivorans P7]
Length = 151
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ A+H + P+ I IAE ISE +L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGQYGVKAMVDLAVHYGEGPSSIKSIAERQNISEYYLEQLFSPLRKANLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
+GG L R +T+ ++++ E +++C H C + C + + +
Sbjct: 61 AQGGYVLEREPKDMTVFEIMEVLEGPVEISKCIDEHNENSCGNMDCCATRLLWSRIKESI 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
V+ ++E +V + +K
Sbjct: 121 DSVMKATTLEDMVEDYKKMK 140
>gi|116250549|ref|YP_766387.1| iron-responsive transcriptional regulator [Rhizobium leguminosarum
bv. viciae 3841]
gi|115255197|emb|CAK06271.1| Rhizobium iron regulator [Rhizobium leguminosarum bv. viciae 3841]
Length = 160
Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats.
Identities = 85/143 (59%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA ++ + +RI +IA A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGHLSRIPEIARAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL +PA I++ DVV+ TE+SF +AECF +CPLV SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGKPAADISLFDVVRVTEDSFAMAECFEDDGEVECPLVDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL++YSI+ LV+ R I +
Sbjct: 121 AVLSEYSIDDLVKARPQINFLLG 143
>gi|161524598|ref|YP_001579610.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|189350646|ref|YP_001946274.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|221198118|ref|ZP_03571164.1| putative transcriptional regulator [Burkholderia multivorans CGD2M]
gi|221208391|ref|ZP_03581394.1| putative transcriptional regulator [Burkholderia multivorans CGD2]
gi|221215143|ref|ZP_03588110.1| putative transcriptional regulator [Burkholderia multivorans CGD1]
gi|160342027|gb|ABX15113.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans ATCC 17616]
gi|189334668|dbj|BAG43738.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|221165079|gb|EED97558.1| putative transcriptional regulator [Burkholderia multivorans CGD1]
gi|221171804|gb|EEE04248.1| putative transcriptional regulator [Burkholderia multivorans CGD2]
gi|221182050|gb|EEE14451.1| putative transcriptional regulator [Burkholderia multivorans CGD2M]
Length = 161
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG+RL + ++T+ +VV+ATE F + CF C + C L VL A +AF
Sbjct: 61 NGGLRLFPASLKLTVGEVVRATETDFALVGCFVAGDDTRGCVIEPQCRLKGVLAAARDAF 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
F L ++++ L ++ +
Sbjct: 121 FAELERHTLAELAEPAPALVSLLG 144
>gi|16272327|ref|NP_438540.1| hypothetical protein HI0379 [Haemophilus influenzae Rd KW20]
gi|145634625|ref|ZP_01790334.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA]
gi|260580558|ref|ZP_05848386.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
influenzae RdAW]
gi|1175234|sp|P44675|Y379_HAEIN RecName: Full=Putative HTH-type transcriptional regulator HI_0379
gi|1573349|gb|AAC22037.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|145268170|gb|EDK08165.1| hypothetical protein CGSHiAA_05351 [Haemophilus influenzae PittAA]
gi|260092900|gb|EEW76835.1| iron-sulfur cluster assembly transcription factor IscR [Haemophilus
influenzae RdAW]
Length = 150
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C +
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|89072688|ref|ZP_01159253.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
gi|89051508|gb|EAR56962.1| hypothetical transcriptional regulator [Photobacterium sp. SKA34]
Length = 183
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 13 MKLTSKGRYAVTAMLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRG 72
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I + V+ A +ES +C DC C ++ +
Sbjct: 73 PGGGYRLGEEASDIAVGMVIAAVDESVDATKCHGKG--DCQGGARCLTHTLWHDLSDRIS 130
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+++
Sbjct: 131 GFLNNITLGELMKDND 146
>gi|126668574|ref|ZP_01739528.1| rrf2 family protein [Marinobacter sp. ELB17]
gi|126626979|gb|EAZ97622.1| rrf2 family protein [Marinobacter sp. ELB17]
Length = 165
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H D P ++ I+ IS +L ++ L + +V ++RG
Sbjct: 1 MKLTTKGRYAVTAMLDLALHGDHGPVTLADISARQEISLSYLEQLFSRLRRRHLVASIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A+ I I +VV+A ES C +K DC C +
Sbjct: 61 PGGGYRLSRGANAIFISEVVEAVSESLDTTRC--GNKGDCQSGEKCLTHHLWSDLSEQIH 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L S+ L+ R I+++
Sbjct: 119 QFLDNISLNDLMEKR-EIRQV 138
>gi|266624781|ref|ZP_06117716.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
hathewayi DSM 13479]
gi|288863341|gb|EFC95639.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
hathewayi DSM 13479]
Length = 139
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +RV++ A D + +IA ISE +L +++ LV+ ++ +RG
Sbjct: 1 MMISTRGRYALRVMLDLAQQTTDRYVPLKEIANRQEISEKYLEIVIKVLVQNKLLTGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R + T+ ++++ TE S C +C G C V ++
Sbjct: 61 KGGGYRLTRAPGEYTLGEILRLTEGSLAPVACAEESYTECSRRGFCLSRPVWQELDKIIN 120
Query: 120 DVLTQYSIECLVRNRSS 136
+ L ++E L+++
Sbjct: 121 EYLDGITLEDLLKSPQK 137
>gi|153010938|ref|YP_001372152.1| iron-responsive transcriptional regulator [Ochrobactrum anthropi
ATCC 49188]
gi|151562826|gb|ABS16323.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
ATCC 49188]
Length = 153
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 106/142 (74%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAVRMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A I++ DVV+ TEE+F +AECF + +CPLV SC L S LR+ALNAFF
Sbjct: 61 NGGVRLGRAAQDISLFDVVRVTEENFAMAECFENDATECPLVDSCALNSALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRHLLG 142
>gi|322806906|emb|CBZ04476.1| iron-sulfur cluster regulator IscR [Clostridium botulinum H04402
065]
Length = 148
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+ D+++ E ++ C C + C + K +
Sbjct: 61 AQGGYILNRHPEDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
+++ +++ +V + I
Sbjct: 120 NIMESTTLQDMVEDYKKIN 138
>gi|222147641|ref|YP_002548598.1| iron-responsive transcriptional regulator [Agrobacterium vitis S4]
gi|221734629|gb|ACM35592.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 156
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 86/143 (60%), Positives = 108/143 (75%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + D+ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRILMYCAANKDHLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GGVRL R ++I++ DVVK TE+SF +AECF DCPL+ SCGL S LRKALNAFF
Sbjct: 61 NGGVRLGRAPEKISLFDVVKVTEDSFAMAECFEDDGEVDCPLIDSCGLNSALRKALNAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL +YSI+ LV+ R I +
Sbjct: 121 AVLAEYSIDDLVKARPQINFLLG 143
>gi|68248982|ref|YP_248094.1| hypothetical protein NTHI0499 [Haemophilus influenzae 86-028NP]
gi|145631834|ref|ZP_01787593.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
gi|145632626|ref|ZP_01788360.1| predicted transcriptional regulator [Haemophilus influenzae 3655]
gi|145640331|ref|ZP_01795915.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
gi|229844533|ref|ZP_04464673.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1]
gi|229846466|ref|ZP_04466574.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1]
gi|68057181|gb|AAX87434.1| predicted transcriptional regulator [Haemophilus influenzae
86-028NP]
gi|144982553|gb|EDJ90107.1| predicted transcriptional regulator [Haemophilus influenzae R3021]
gi|144986821|gb|EDJ93373.1| predicted transcriptional regulator [Haemophilus influenzae 3655]
gi|145274917|gb|EDK14779.1| predicted transcriptional regulator [Haemophilus influenzae
22.4-21]
gi|229810559|gb|EEP46277.1| predicted transcriptional regulator [Haemophilus influenzae 7P49H1]
gi|229812782|gb|EEP48471.1| predicted transcriptional regulator [Haemophilus influenzae 6P18H1]
gi|309972462|gb|ADO95663.1| transcriptional regulator IscR [Haemophilus influenzae R2846]
Length = 150
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C +
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|171317873|ref|ZP_02907050.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
gi|171096942|gb|EDT41812.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
Length = 172
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGEGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
GG+RL + ++T+ VV+ATE F + CF++ C + C L VL A +A
Sbjct: 61 NGGLRLFPDSLKLTVGQVVRATESDFALVGCFSADGGASRGCVIEPQCRLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++ L S + +
Sbjct: 121 FFAELDGHTLGELAEPASPLVALLG 145
>gi|220934658|ref|YP_002513557.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
HL-EbGR7]
gi|219995968|gb|ACL72570.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
HL-EbGR7]
Length = 158
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + +M AIH+ P ++ I++ IS +L ++ L K G+VE VRG
Sbjct: 1 MKLSTKGRYAVTAMMDLAIHDRIGPVTLADISQCQGISLSYLEQLFAKLRKHGLVEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PAD+IT+ +++ A +E+ V C + DC C + + +
Sbjct: 61 PGGGYRLAKPADRITVANIITAVDENVDVTRCQGNE--DCQQGDRCLTHELWKDLSQQLY 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++
Sbjct: 119 GFLDGITLAQFANRPE 134
>gi|167756512|ref|ZP_02428639.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402]
gi|167702687|gb|EDS17266.1| hypothetical protein CLORAM_02049 [Clostridium ramosum DSM 1402]
Length = 144
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y IRV++ A+H+D + IA+ ++ +L +I+ L KAG ++++RG
Sbjct: 1 MKISTKGRYAIRVILDIAMHDDGKYIPLKDIAKRQDLTVKYLEQIISLLNKAGYLQSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + ++ I D+++ TE C +C C +
Sbjct: 61 NAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANECITLPFWQGLDKVIK 120
Query: 120 DVLTQYSIECLVRNRS 135
D + +I+ L+ + +
Sbjct: 121 DYVESVTIQDLIDHAN 136
>gi|169350929|ref|ZP_02867867.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552]
gi|169291991|gb|EDS74124.1| hypothetical protein CLOSPI_01706 [Clostridium spiroforme DSM 1552]
Length = 148
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 68/144 (47%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ AIH+D + IA+ ++ +L +I+ L KAG ++++RG
Sbjct: 1 MKISTKGRYALRIMLDIAIHDDGKYIPLKDIAKRQNLTVKYLEQIISLLNKAGYLQSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + D+ + D+++ TE C C C R
Sbjct: 61 NTGGYRLAKNLDEYVVGDILRVTEGDLAPVACLKKCGDFCQREDICNTVLFWRGLDRVIN 120
Query: 120 DVLTQYSIECLVR---NRSSIKKI 140
+ + Y+++ L+ ++ + KK+
Sbjct: 121 EYVDSYTLKDLLEQSQDKDNNKKL 144
>gi|145636353|ref|ZP_01792022.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH]
gi|148827518|ref|YP_001292271.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG]
gi|319775754|ref|YP_004138242.1| transcriptional regulator [Haemophilus influenzae F3047]
gi|329123595|ref|ZP_08252155.1| iron-sulfur cluster assembly transcription regulator IscR
[Haemophilus aegyptius ATCC 11116]
gi|145270518|gb|EDK10452.1| hypothetical protein CGSHiHH_07746 [Haemophilus influenzae PittHH]
gi|148718760|gb|ABQ99887.1| hypothetical protein CGSHiGG_04705 [Haemophilus influenzae PittGG]
gi|301169081|emb|CBW28678.1| DNA-binding transcriptional repressor [Haemophilus influenzae
10810]
gi|317450345|emb|CBY86561.1| predicted transcriptional regulator [Haemophilus influenzae F3047]
gi|327469794|gb|EGF15259.1| iron-sulfur cluster assembly transcription regulator IscR
[Haemophilus aegyptius ATCC 11116]
Length = 150
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C +
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHKLWEDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|152995372|ref|YP_001340207.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1]
gi|150836296|gb|ABR70272.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1]
Length = 162
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+D P +S I+ IS +L ++ L K +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDQGPVSLSDISSRQGISLSYLEQLFSKLRKKSLVNSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R +I + +V A ES C + DC +C + +
Sbjct: 61 PGGGYRLSRLNSEIFVAQIVDAVNESVDATGC--KGRSDCQSGNTCLTHHLWCDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
D L Q S++ LVR
Sbjct: 119 DFLNQISLDQLVRRND 134
>gi|117621543|ref|YP_856282.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
gi|117562950|gb|ABK39898.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
hydrophila subsp. hydrophila ATCC 7966]
Length = 167
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + I++ V+ A +ES +C C C S+ R
Sbjct: 61 PGGGYRLGLAPNAISVGQVITAVDESVDATKCLGKGG--CHGGTQCLTHSLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV +
Sbjct: 119 SFLGDITLAELVDQADVRR 137
>gi|260887774|ref|ZP_05899037.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
sputigena ATCC 35185]
gi|330838672|ref|YP_004413252.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
ATCC 35185]
gi|260862450|gb|EEX76950.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
sputigena ATCC 35185]
gi|329746436|gb|AEB99792.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
ATCC 35185]
Length = 143
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R++M A++ + P RI IA ISE +L +I+ L KAG V++ RG
Sbjct: 1 MKISTRGRYALRLMMDIAMNGQNEPVRIKDIARRQEISEKYLEQIVSVLNKAGFVKSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R + T ++ E S C + DCP C + +K A
Sbjct: 61 PQGGYRLMRAPQEYTAGSILCLIEGSLAPVACMDMEENDCPRHERCATLFLWQKLHEAMK 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
DV+ S+ L+ + + +
Sbjct: 121 DVIENVSLSDLIEMQRELDE 140
>gi|20807692|ref|NP_622863.1| transcriptional regulator [Thermoanaerobacter tengcongensis MB4]
gi|20516241|gb|AAM24467.1| predicted transcriptional regulator [Thermoanaerobacter
tengcongensis MB4]
Length = 149
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YGI+ + A++ + P + IAE +SE +L +++ L KA +V++VRG
Sbjct: 1 MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLMAILRKADLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L P D+IT+ DV++ E S A+C +C G C V+ + ++
Sbjct: 61 AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVVEDTPFECSRAGGCPTKLVMERIRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V+ +++ +V + + +
Sbjct: 121 NKVIDSITLQDMVEDYRRLNQ 141
>gi|120554049|ref|YP_958400.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei
VT8]
gi|120323898|gb|ABM18213.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei
VT8]
Length = 165
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+ IS +L ++ L + +V +VRG
Sbjct: 1 MKLTTKGRYAVTAMLDLALHAGQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R AD++ + +VV A ES C +K DC C + +
Sbjct: 61 PGGGYRLSRSADEVFVAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L++ S+ L+R + I+++
Sbjct: 119 QFLSEISLGDLMR-KHEIRQV 138
>gi|251788733|ref|YP_003003454.1| DNA-binding transcriptional regulator IscR [Dickeya zeae Ech1591]
gi|247537354|gb|ACT05975.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
Length = 164
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + +I + V+ A +ES C K C C ++ R +
Sbjct: 61 PGGGYLLGKDSAEIAVGSVISAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L +++ LV N+ +
Sbjct: 119 GFLNNITLDELVNNKEIL 136
>gi|254519288|ref|ZP_05131344.1| rrf2 family protein [Clostridium sp. 7_2_43FAA]
gi|226913037|gb|EEH98238.1| rrf2 family protein [Clostridium sp. 7_2_43FAA]
Length = 150
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ A+H D P I I++ ISE +L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAMHYGDAPVSIKTISQRQNISEYYLEQLFSPLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L IT+ DV+ E +AEC +C + C + K N+
Sbjct: 61 AQGGYVLNYAPKDITVADVMNVLEGPVEIAECIEG--TECDNIDFCATRLLWEKIKNSID 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+V+ +++ +V + +K
Sbjct: 119 EVMKNITLQDIVDDYVRMKD 138
>gi|148380524|ref|YP_001255065.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
gi|153931906|ref|YP_001384811.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|153936580|ref|YP_001388282.1| rrF2 family protein [Clostridium botulinum A str. Hall]
gi|153940007|ref|YP_001391866.1| rrF2 family protein [Clostridium botulinum F str. Langeland]
gi|168180542|ref|ZP_02615206.1| rrF2 family protein [Clostridium botulinum NCTC 2916]
gi|170756317|ref|YP_001782184.1| rrF2 family protein [Clostridium botulinum B1 str. Okra]
gi|170760847|ref|YP_001787887.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree]
gi|226949924|ref|YP_002805015.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|148290008|emb|CAL84127.1| RRF2 family regulatory protein [Clostridium botulinum A str. ATCC
3502]
gi|152927950|gb|ABS33450.1| rrF2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|152932494|gb|ABS37993.1| rrF2 family protein [Clostridium botulinum A str. Hall]
gi|152935903|gb|ABS41401.1| rrF2 family protein [Clostridium botulinum F str. Langeland]
gi|169121529|gb|ACA45365.1| rrF2 family protein [Clostridium botulinum B1 str. Okra]
gi|169407836|gb|ACA56247.1| rrF2 family protein [Clostridium botulinum A3 str. Loch Maree]
gi|182668574|gb|EDT80553.1| rrF2 family protein [Clostridium botulinum NCTC 2916]
gi|226841762|gb|ACO84428.1| rrF2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|295319890|gb|ADG00268.1| rrF2 family protein [Clostridium botulinum F str. 230613]
Length = 148
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R IT+ D+++ E ++ C C + C + K +
Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNMDCCATRLLWAKIKESLD 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
+++ +++ +V + I
Sbjct: 120 NIMESTTLQDMVEDYKKIN 138
>gi|28868629|ref|NP_791248.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|213971530|ref|ZP_03399641.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1]
gi|301386135|ref|ZP_07234553.1| rrf2 family protein [Pseudomonas syringae pv. tomato Max13]
gi|302060165|ref|ZP_07251706.1| rrf2 family protein [Pseudomonas syringae pv. tomato K40]
gi|302135108|ref|ZP_07261098.1| rrf2 family protein [Pseudomonas syringae pv. tomato NCPPB 1108]
gi|28851867|gb|AAO54943.1| rrf2 family protein [Pseudomonas syringae pv. tomato str. DC3000]
gi|213923722|gb|EEB57306.1| rrf2 family protein [Pseudomonas syringae pv. tomato T1]
gi|330872891|gb|EGH07040.1| rrf2 family protein [Pseudomonas syringae pv. morsprunorum str.
M302280PT]
gi|330965903|gb|EGH66163.1| rrf2 family protein [Pseudomonas syringae pv. actinidiae str.
M302091]
gi|331019392|gb|EGH99448.1| rrf2 family protein [Pseudomonas syringae pv. lachrymans str.
M302278PT]
Length = 163
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + VV A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|87118505|ref|ZP_01074404.1| rrf2 family protein [Marinomonas sp. MED121]
gi|86166139|gb|EAQ67405.1| rrf2 family protein [Marinomonas sp. MED121]
Length = 165
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+D P ++ I+ IS +L ++ L K +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDNGPVSLADISLRQGISLSYLEQLFAKLRKQTLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R DQI + +V A ES C K DC +C + +
Sbjct: 61 PGGGYRLSRANDQIFVAQIVDAVNESVDATGC--KGKNDCQSGTTCLTHHLWCDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+Q S+ LV +
Sbjct: 119 DFLSQISLAQLVSRKD 134
>gi|291166173|gb|EFE28219.1| Rrf2 family protein [Filifactor alocis ATCC 35896]
Length = 147
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 39/146 (26%), Positives = 70/146 (47%), Gaps = 4/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + YG++ + A++ D P + IA +SE +L +I L K+G+V +VR
Sbjct: 1 MKLSTKGRYGLKAMYDLAVYEDLHEPISLKAIASNNNLSEQYLEQIFSKLKKSGLVNSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R + +IT+ D+++ + + C C C +V +K ++
Sbjct: 61 GAQGGYVLSRSSKEITVGDIIRVLDGPIAPSMCLLEEVGPCISGKDCPTRAVWKKIKDSV 120
Query: 119 FDVLTQYSIECLVRNRSSIK--KIFN 142
DV+ ++ +V IK I N
Sbjct: 121 DDVIDNITLYDMVIEHKLIKSDSILN 146
>gi|323526163|ref|YP_004228316.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
CCGE1001]
gi|323383165|gb|ADX55256.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1001]
Length = 166
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + + I I+EA IS+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISEAYGISKNHLMKVVQRLSELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ ++V+ATE F + C C + C L +VL A +A
Sbjct: 61 NGGLRLAERSRTLTVGEIVRATENDFALVACLPDQDGQRRPCVITPQCRLRNVLEAARHA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
F L +++IE + + + +
Sbjct: 121 FLAELDRHTIEEVSGPQGPLAALLG 145
>gi|310829310|ref|YP_003961667.1| RRF2 family protein [Eubacterium limosum KIST612]
gi|308741044|gb|ADO38704.1| RRF2 family protein [Eubacterium limosum KIST612]
Length = 135
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + A + + P I +IAE S+ ++ ++ L KAG++ ++RG
Sbjct: 1 MRLSTKGRYGVLAMYELACRYGNGPVSIKEIAEKQNFSDSYMEQLFSTLKKAGLIVSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L R I++ ++++A E +A+C C G C + + ++
Sbjct: 61 AKGGYILSREPRDISVGEIIRALEGPIELADCVGGPEGYVCRKSGECVTRGLWMEIRDSI 120
Query: 119 FDVLTQYSIECLVRN 133
+++ S++ L+ N
Sbjct: 121 NNIIDNRSLQDLMDN 135
>gi|94501139|ref|ZP_01307662.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter
sp. RED65]
gi|94426715|gb|EAT11700.1| Transcriptional Regulator, BadM/Rrf2 family protein [Oceanobacter
sp. RED65]
Length = 160
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH P ++ I+ IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLAIHGQHKPVSLNDISGRQGISLSYLEQLFAKLRRCDLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R +I+I VV A ES C DC C + +
Sbjct: 61 PGGGYRLSREGSEISIAQVVDAVNESMDATRCRGKG--DCQEGDQCLTHHLWQDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ SI LV + +
Sbjct: 119 AFLSDISIADLVSRKEIL 136
>gi|26987577|ref|NP_743002.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
KT2440]
gi|24982253|gb|AAN66466.1|AE016276_1 rrf2 family protein [Pseudomonas putida KT2440]
Length = 163
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV+ R
Sbjct: 119 EFLSGISLADLVKRRD 134
>gi|51893529|ref|YP_076220.1| putative transcriptional regulator [Symbiobacterium thermophilum
IAM 14863]
gi|51857218|dbj|BAD41376.1| putative transcriptional regulator [Symbiobacterium thermophilum
IAM 14863]
Length = 146
Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ L A+H P + IAE +SE +L ++ PL +AGI+ VRG
Sbjct: 1 MKLSTKGKYGVKALFELAMHEGSGPVSLRTIAERQGLSEHYLEQLAAPLRRAGIITAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RPA+QIT+ D+++ E +C + D +C + V +
Sbjct: 61 AQGGYMLARPANQITVGDIIRVLEGPIGYTDCATEGEPDPECASTCPVHGVWERVTQQII 120
Query: 120 DVLTQYSIECLVRN 133
V+ +++ LV
Sbjct: 121 AVIDSITLQDLVDQ 134
>gi|187778845|ref|ZP_02995318.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC
15579]
gi|187772470|gb|EDU36272.1| hypothetical protein CLOSPO_02440 [Clostridium sporogenes ATCC
15579]
Length = 148
Score = 132 bits (333), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R IT+ D+++ E ++ C C V C + K +
Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCGNVDCCATRLLWAKIKKSLD 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
+++ +++ +V + I
Sbjct: 120 NIMESTTLQDMVEDYRKIN 138
>gi|138895291|ref|YP_001125744.1| hypothetical protein GTNG_1635 [Geobacillus thermodenitrificans
NG80-2]
gi|196250928|ref|ZP_03149612.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
G11MC16]
gi|134266804|gb|ABO66999.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
gi|196209569|gb|EDY04344.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
G11MC16]
Length = 148
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT T+Y +RVL++ + I +I+ +SE L KI+ L K G +ET+RG
Sbjct: 1 MQLTSYTEYALRVLLFLGTLDEGEKTNIKEISTIFSLSEHHLSKIVHELGKLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + ++I + VV+ TE++ + ECFASH +C L +C L VLR+AL AF
Sbjct: 61 RNGGIRLAKRPEEIIVGAVVRETEDNLSLVECFASHGNECILTPACRLRFVLREALEAFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL Y++ L+ NR+S++ +
Sbjct: 121 RVLDTYTLADLLENRTSLRALL 142
>gi|110633798|ref|YP_674006.1| iron-responsive transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110284782|gb|ABG62841.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
BNC1]
Length = 153
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 105/142 (73%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA + +RI IA+A +S+LFLFKILQPLV+AG V+TVRGR
Sbjct: 1 MRLTRQTNYAIRILMYCAANEGRLSRIPDIAQAYSLSDLFLFKILQPLVEAGFVQTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA+ IT+ DV++ TEESF +AECF + +CPLV CGL LRKAL AFF+
Sbjct: 61 NGGVKLGKPAEDITLFDVIRVTEESFAMAECFEND-TECPLVDGCGLNEALRKALGAFFE 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y+I+ LV R +++ +
Sbjct: 120 VLASYTIQDLVDARPNMRDVLG 141
>gi|192359950|ref|YP_001982031.1| rrf2 family protein [Cellvibrio japonicus Ueda107]
gi|190686115|gb|ACE83793.1| rrf2 family protein [Cellvibrio japonicus Ueda107]
Length = 160
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/144 (37%), Positives = 86/144 (59%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +RVL+Y A+ + + I +IA++ IS+ L K++Q L G ++ VRG+
Sbjct: 16 MRITRYTDYSLRVLIYVALKGEAISTIREIADSYGISKNHLMKVVQELNNKGYLQAVRGK 75
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + I I +V+ TEE F + ECF+ +C L +C L VL KAL AFF
Sbjct: 76 HGGLRLNGRPEDINIGRLVRHTEEDFALVECFSGG--ECSLTPACRLKGVLVKALEAFFQ 133
Query: 121 VLTQYSIECL--VRNRSSIKKIFN 142
VL Y++ L + +R + ++ +
Sbjct: 134 VLDGYTLADLLPLSSRRELVRLLS 157
>gi|197116760|ref|YP_002137187.1| BadM/Rrf2 family transcriptional regulator [Geobacter bemidjiensis
Bem]
gi|197086120|gb|ACH37391.1| transcriptional regulator, BadM/Rrf2 family [Geobacter bemidjiensis
Bem]
Length = 152
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG
Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + ++IT+ V++ATE + +C + K +C GSC +V ++ N
Sbjct: 61 PQGGYCLAKSPEEITVRAVIEATEGDTLIVDCASRKKGECNFDGSCVTQTVWEESNNRLN 120
Query: 120 DVLTQYSIECLVRNRSSI 137
+ +++ L ++
Sbjct: 121 EFFESITLKTLCDRGETL 138
>gi|83593363|ref|YP_427115.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
ATCC 11170]
gi|83576277|gb|ABC22828.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
ATCC 11170]
Length = 154
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + + A H+ P ++ IA+ IS +L ++ L K G+V++VRG
Sbjct: 1 MRLSTKGRYAVMAMADLAAHSGGKPVALADIADRQEISLSYLEQLFGRLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A + I D++ A +E C C G C + + N
Sbjct: 61 PGGGYLLSREAGDMRISDIILAVDEPIQTTRCSPGSPAGCHNNKGRCMTHDLWEELANQI 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L+ S+E + + R
Sbjct: 121 YLYLSSVSLEDVTQRR 136
>gi|210615813|ref|ZP_03290794.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787]
gi|210150149|gb|EEA81158.1| hypothetical protein CLONEX_03012 [Clostridium nexile DSM 1787]
Length = 151
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 73/143 (51%), Gaps = 2/143 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A +++ P IS I+ ISE +L +++ L +AG+++++RG
Sbjct: 1 MKISTKGRYGLRALIDIAQYSEIEPVPISSISARQDISERYLEQLMALLKRAGLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + +I++ DV++A E + EC A + C G C V +K +
Sbjct: 61 AGGGYVLAKDVSEISVGDVLRALEGNLEPVECAAFHEEESCEAAGGCVTKYVWKKINESI 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+ + ++ LV I++
Sbjct: 121 NRTVDEIDLKQLVEESKQIQQNL 143
>gi|330957514|gb|EGH57774.1| rrf2 family protein [Pseudomonas syringae pv. maculicola str.
ES4326]
Length = 163
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + VV A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|257439947|ref|ZP_05615702.1| iron-sulfur cluster assembly transcription factor IscR
[Faecalibacterium prausnitzii A2-165]
gi|257197554|gb|EEU95838.1| iron-sulfur cluster assembly transcription factor IscR
[Faecalibacterium prausnitzii A2-165]
Length = 149
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG
Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + T ++++A E S C S +CP+ C
Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMSEQCFTLPFWAGLDEVIN 120
Query: 120 DVLTQYSIECLVR 132
+ ++E L +
Sbjct: 121 QYIDSVTLEQLAQ 133
>gi|157827027|ref|YP_001496091.1| putative transcriptional regulator [Rickettsia bellii OSU 85-389]
gi|157802331|gb|ABV79054.1| Putative transcriptional regulator [Rickettsia bellii OSU 85-389]
Length = 149
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A I +IAE IS L K++ L + G + + +G+
Sbjct: 14 MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 73
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P I + D+++ E + + ECF C + SC +++A NAF
Sbjct: 74 GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 133
Query: 121 VLTQYSIECLVRNR 134
L Y++E + N+
Sbjct: 134 TLNNYTLEDAINNK 147
>gi|168182647|ref|ZP_02617311.1| rrF2 family protein [Clostridium botulinum Bf]
gi|237796007|ref|YP_002863559.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657]
gi|182674079|gb|EDT86040.1| rrF2 family protein [Clostridium botulinum Bf]
gi|229263788|gb|ACQ54821.1| rrF2 family protein [Clostridium botulinum Ba4 str. 657]
Length = 148
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AI+ P I I+E ISE +L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGQPVSIKNISERQHISEYYLEQLFSPLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R IT+ D+++ E ++ C C V C + K +
Sbjct: 61 AQGGYILNRHPKDITVADIMEVLEGPIEISSCLEGED-SCSNVDCCATRLLWAKIKKSLD 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
+++ +++ +V + I
Sbjct: 120 NIMESTTLQDMVEDYKKIN 138
>gi|91205424|ref|YP_537779.1| putative transcriptional regulator [Rickettsia bellii RML369-C]
gi|91068968|gb|ABE04690.1| Putative transcriptional regulator [Rickettsia bellii RML369-C]
Length = 136
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 69/134 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A I +IAE IS L K++ L + G + + +G+
Sbjct: 1 MQLTSFTDYGLRSLIYLASKQGEICSIKEIAEYYNISLNHLVKVIHKLAQLGYISSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P I + D+++ E + + ECF C + SC +++A NAF
Sbjct: 61 GGGIRLASPPSSIKLGDIIEKLEPNMDIVECFNKDTNRCRITNSCQFKHFIKEASNAFIK 120
Query: 121 VLTQYSIECLVRNR 134
L Y++E + N+
Sbjct: 121 TLNNYTLEDAINNK 134
>gi|255318956|ref|ZP_05360181.1| putative transcriptional regulator [Acinetobacter radioresistens
SK82]
gi|262378308|ref|ZP_06071465.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter radioresistens SH164]
gi|255303973|gb|EET83165.1| putative transcriptional regulator [Acinetobacter radioresistens
SK82]
gi|262299593|gb|EEY87505.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter radioresistens SH164]
Length = 157
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARTADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + ++ LV +
Sbjct: 119 DYLAKITLADLVARDN 134
>gi|323499942|ref|ZP_08104901.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326]
gi|323315183|gb|EGA68235.1| hypothetical protein VISI1226_15881 [Vibrio sinaloensis DSM 21326]
Length = 168
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C + K DC C ++ R +
Sbjct: 61 PGGGYRLGEDAYTIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+++ ++
Sbjct: 119 DFLNNITLGELMKDNEVLE 137
>gi|311031562|ref|ZP_07709652.1| nitric oxide sensitive transcriptional regulator [Bacillus sp.
m3-13]
Length = 158
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT TDY +RVL+Y A + +I +IAEA IS+ L K+ L K G VET+R
Sbjct: 1 MKLTLYTDYSLRVLLYLASAPENNKLIQIKEIAEAYGISKNHLMKVTFHLGKLGYVETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L + ++ I ++V+ TEE F + ECF H C + C L VL +A AF
Sbjct: 61 GRNGGLLLAKEPKELNIGELVRQTEEDFHIVECFQDH-ASCVISPHCKLKGVLYQATQAF 119
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL QY++ L+ N+ + +
Sbjct: 120 ISVLDQYTLADLITNKEQLTTLL 142
>gi|289208014|ref|YP_003460080.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thioalkalivibrio sp. K90mix]
gi|288943645|gb|ADC71344.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
K90mix]
Length = 164
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++++A +S +L ++ L + G+V + RG
Sbjct: 1 MKLTTKGRYAVTAMLDVAMHTENSPVSLAEVARRQKLSLSYLEQLFSRLRRQGLVNSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R + I++ D++ A +E V C K +C C + +
Sbjct: 61 PGGGYALSREPEGISVADIIVAVDEPVDVTRC--GGKANCNSESRCLTHDLWTDLSQQLY 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L+ ++ ++ +
Sbjct: 119 DFLSSRTLADVLERHQA 135
>gi|167771918|ref|ZP_02443971.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM
17241]
gi|167665716|gb|EDS09846.1| hypothetical protein ANACOL_03291 [Anaerotruncus colihominis DSM
17241]
Length = 143
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H + + +IA+ ISE +L IL+ LV+ + VRG
Sbjct: 1 MMISTKGRYALRVMVDLAEHQGEGYIPLKEIAQRQEISEKYLEAILKVLVREHFLIGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R +Q T +++ TE S C H + CP C + +K
Sbjct: 61 KGGGYRLSRAPEQYTAGSIIRLTEGSLAPVACLEPHALACPRAAHCRTLPMWKKFDQVVN 120
Query: 120 DVLTQYSIECLVRNRSS 136
D Y++ L+ + +
Sbjct: 121 DFFDSYTLADLMEHSEN 137
>gi|319896708|ref|YP_004134901.1| transcriptional regulator [Haemophilus influenzae F3031]
gi|317432210|emb|CBY80562.1| predicted transcriptional regulator [Haemophilus influenzae F3031]
Length = 150
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C + +
Sbjct: 61 SGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWQDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|253698991|ref|YP_003020180.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacter sp. M21]
gi|251773841|gb|ACT16422.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
Length = 152
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG
Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + D+IT+ VV+ATE + +C K +C GSC +V ++ N
Sbjct: 61 PQGGYCLAKSPDEITVRAVVEATEGDTLIVDCAGRKKGECSFDGSCVTQTVWEESNNRLN 120
Query: 120 DVLTQYSIECLVRNRSSI 137
+ +++ L ++
Sbjct: 121 EFFESITLKTLCDRGETL 138
>gi|149923899|ref|ZP_01912287.1| Rrf2 family protein [Plesiocystis pacifica SIR-1]
gi|149815242|gb|EDM74789.1| Rrf2 family protein [Plesiocystis pacifica SIR-1]
Length = 145
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 75/132 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK TDY +RVL+Y A + +I+EA IS L K++ L +AG + RGR
Sbjct: 1 MRLTKHTDYALRVLIYVAAADGRQVSTDEISEAYGISGHHLVKVVGTLGRAGFLAVKRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L R +++ + +V++ATE F + EC +CPL G+C L S L +A AF
Sbjct: 61 GGGVTLARDPEELRLGEVLEATEPDFAMVECMQEGNTECPLTGACSLVSPLYEAQRAFIA 120
Query: 121 VLTQYSIECLVR 132
L QY++ ++
Sbjct: 121 SLDQYTLADVLN 132
>gi|145628736|ref|ZP_01784536.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae
22.1-21]
gi|144979206|gb|EDJ88892.1| hypothetical protein CGSHi22121_06960 [Haemophilus influenzae
22.1-21]
Length = 150
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAVLDIALNADGGPVSLADISERQHISLSYLEQLFAKLRKDGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P++QI++ ++ A E+ V +C +C C +
Sbjct: 61 PGGGYQLGLPSEQISVGMIIAAVNENIHVTKCLGRE--NCKNGVECLTHELWEDLSLRIE 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + ++ LV R+ ++
Sbjct: 119 SFLNEITLAELVNKRNVKRQ 138
>gi|317055144|ref|YP_004103611.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
gi|315447413|gb|ADU20977.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
Length = 144
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R++ A H +D I IAE IS+ +L +I+ L ++G V +VRG
Sbjct: 1 MKISTKGRYALRLMTDLAEHKDDGYIPIKVIAERQNISDKYLEQIISILSRSGYVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P ++ T+ +++ TE S C + + CP +C + K +A
Sbjct: 61 AGGGYTLAYPPEKYTVGMILRLTEGSLAPVACLETDENLCPRAKACPTLFIWEKLYSAIN 120
Query: 120 DVLTQYSIECLVRN 133
V+ +I +V
Sbjct: 121 YVVDGITIADIVAR 134
>gi|146308527|ref|YP_001188992.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
ymp]
gi|145576728|gb|ABP86260.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas mendocina
ymp]
Length = 165
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVARRE 134
>gi|298247883|ref|ZP_06971688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297550542|gb|EFH84408.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 152
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MHLT TDY +RVL+Y A + D I IA+ IS L KI+ L K G +ET+RG
Sbjct: 1 MHLTYHTDYALRVLLYLAAYPDTQLANIQDIADTYTISSNHLMKIVHKLGKLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL R I I +VV+ TEE FF+ ECF S C + C L + L++AL AF
Sbjct: 61 RNGGMRLARKPADIRIGEVVRQTEEDFFLVECFDSEHNCCVITPVCNLRTALQEALTAFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++ L N++ +++
Sbjct: 121 SVLDKYTLADLTSNKALYQRLI 142
>gi|237800030|ref|ZP_04588491.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. oryzae str. 1_6]
gi|331022885|gb|EGI02942.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. oryzae str. 1_6]
Length = 163
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + VV A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMKVIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|254361062|ref|ZP_04977207.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
gi|261493610|ref|ZP_05990130.1| putative transcriptional regulator [Mannheimia haemolytica serotype
A2 str. BOVINE]
gi|261495448|ref|ZP_05991896.1| putative transcriptional regulator [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|153092548|gb|EDN73603.1| possible transcriptional regulator [Mannheimia haemolytica PHL213]
gi|261308953|gb|EEY10208.1| putative transcriptional regulator [Mannheimia haemolytica serotype
A2 str. OVINE]
gi|261310792|gb|EEY11975.1| putative transcriptional regulator [Mannheimia haemolytica serotype
A2 str. BOVINE]
Length = 150
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I++ IS +L ++ L + GIV++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALHGKLEPVSLADISDRQAISLSYLEQLFAQLRRDGIVQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + ++I++ ++ A E+ V +C S +C C S+ + +
Sbjct: 61 PGGGYQLGKKPEEISVGMIISAVNENIDVTKCKGSG--NCRKDSQCLTHSLWERLEDQIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
L S+ L +
Sbjct: 119 QFLGTISVADLAAEHAD 135
>gi|197303190|ref|ZP_03168232.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC
29176]
gi|197297730|gb|EDY32288.1| hypothetical protein RUMLAC_01913 [Ruminococcus lactaris ATCC
29176]
Length = 151
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A +++ P I+ I++ ISE +L +++ L KAGIV+++RG
Sbjct: 1 MKLSTKGRYGLRALIDLAQYSEETPVSITSISKRQDISERYLEQLMSMLKKAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L R A +I++ +V++A E S EC + C SC V ++ ++
Sbjct: 61 ANGGYILARDAKEISVGEVLRALEGSLEPVECAGLDPRGGCQASESCVTKYVWKRINDSI 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+ + LV +
Sbjct: 121 NRTVDDIWLSQLVEEGRN 138
>gi|167587014|ref|ZP_02379402.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
ubonensis Bu]
Length = 165
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 80/144 (55%), Gaps = 2/144 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG+RL + ++T+ VV+ TE F + CF + C + C L VL A +AF
Sbjct: 61 NGGLRLFPHSTRLTVGQVVRETENDFALVGCFAGGESQRACVIEPHCRLKGVLAAARDAF 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
F L ++++ L + S + +
Sbjct: 121 FAELDRHTLGELAQPASPLAALLG 144
>gi|110802830|ref|YP_699071.1| hypothetical protein CPR_1756 [Clostridium perfringens SM101]
gi|110683331|gb|ABG86701.1| rrf2 family protein [Clostridium perfringens SM101]
Length = 153
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AI+ P I I++ ISE +L ++ L KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAINYGGSPVSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+ D+++ E +++C + C V C + +K +
Sbjct: 61 AQGGYILNRQPEDITVSDIIEVLEGPIEISDCLDG--VTCNNVDCCATRLLWKKIKTSID 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+V +++ +V + ++K+
Sbjct: 119 EVTNSVTLKDIVEDYKAMKE 138
>gi|239827060|ref|YP_002949684.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. WCH70]
gi|239807353|gb|ACS24418.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
Length = 147
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT T+Y +RVL++ + + I +I++ ISE L KI+ L K G +ET+RG
Sbjct: 1 MQLTNYTEYALRVLLFLGTLDPEEKTNIKEISKTFSISENHLSKIVYELGKLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL R ++I I VV+ TEE+ + ECFA H C L C L VL +AL +F
Sbjct: 61 RNGGIRLARKPEEIRIGSVVRNTEENLSLVECFAGHGNHCVLTPVCQLKRVLHEALGSFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL Y++ L+ N+ ++ IF
Sbjct: 121 QVLDSYTLADLLSNKQHLQMIFR 143
>gi|150015981|ref|YP_001308235.1| BadM/Rrf2 family transcriptional regulator [Clostridium
beijerinckii NCIMB 8052]
gi|149902446|gb|ABR33279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
beijerinckii NCIMB 8052]
Length = 150
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A + P I I++ +SE +L ++ PL +A ++ ++RG
Sbjct: 1 MKLSTKGRYGVRAMVDLASNYGGAPVSIKTISKRENLSEYYLEQLFSPLRRANMIRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG LC+ IT+ D++ E +A+C ++C C +V K +
Sbjct: 61 AQGGYVLCKAPKDITVGDIMTILEGPVEIADCIDG--VECDSSDCCATKAVWEKIKRSID 118
Query: 120 DVLTQYSIECLVRNRS 135
DV+ +++ ++ +
Sbjct: 119 DVMNSITLQDILDDYE 134
>gi|134295879|ref|YP_001119614.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
vietnamiensis G4]
gi|134139036|gb|ABO54779.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
vietnamiensis G4]
Length = 171
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/145 (37%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ D I +I++A +S+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYALRVMLYLAVRGDGLATIQEISDAYGVSKNHLMKVVQQLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL + ++TI VV+ATE F + CFA + C + C L VL A +A
Sbjct: 61 NGGLRLFPASLKLTIGQVVRATENDFALVGCFAPDGGESRGCVIQPQCQLKGVLAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L S + +
Sbjct: 121 FFAELDRHTIGELSVPASPLVALLG 145
>gi|295104009|emb|CBL01553.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
prausnitzii SL3/3]
Length = 157
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG
Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + T ++++A E S C S +CP+ C
Sbjct: 61 SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 120
Query: 120 DVLTQYSIECLVRN 133
+ ++E L
Sbjct: 121 QYIDSVTLEQLASQ 134
>gi|304316708|ref|YP_003851853.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thermoanaerobacterium thermosaccharolyticum DSM 571]
gi|302778210|gb|ADL68769.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 149
Score = 132 bits (332), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A++ + P + IAE +SE +L +++ L KA +V+++RG
Sbjct: 1 MKLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L P D+IT+ DV++ E S ++C +C G C V+ K +A
Sbjct: 61 AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDMPFECSRSGGCPTKLVMEKIRDAI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V+ +++ +V + + +
Sbjct: 121 NKVIDSITLQDMVDDYKKMIQ 141
>gi|145299544|ref|YP_001142385.1| ISC operon transcriptional regulator IscR [Aeromonas salmonicida
subsp. salmonicida A449]
gi|142852316|gb|ABO90637.1| isc operon transcriptional regulator IscR [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 167
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL D I++ V+ A +ES +C C C S+ R
Sbjct: 61 PGGGYRLGLTPDAISVGQVITAVDESVDATKCLGKGG--CHGGTQCLTHSLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV +
Sbjct: 119 SFLGDITLAELVGQADVRR 137
>gi|157961313|ref|YP_001501347.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana
ATCC 700345]
gi|157846313|gb|ABV86812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana
ATCC 700345]
Length = 153
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTNGPVPLADISERQGISLSYLEQLFAKLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I++ VV+A +ES C +C C S+ +
Sbjct: 61 PGGGYRLGTDACDISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSSQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 119 DFLNGISLAGLMHKRD 134
>gi|307729210|ref|YP_003906434.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
CCGE1003]
gi|323526617|ref|YP_004228770.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
CCGE1001]
gi|307583745|gb|ADN57143.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1003]
gi|323383619|gb|ADX55710.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1001]
Length = 176
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R + +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRPEDVTVADIIIAVDEPLDATQCGGKGSCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|253997038|ref|YP_003049102.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis
JLW8]
gi|253983717|gb|ACT48575.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis
JLW8]
Length = 168
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M LT + + + ++ AI+ P ++ I+E IS +L ++ L + G+V
Sbjct: 1 MRLTTKGRFAVTAMLDLAINETKDALEAKPVTLAGISERQDISLSYLEQLFSRLRRQGLV 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+++RG GG L + +I++ +++ A +E +C +C G C +
Sbjct: 61 KSIRGPGGGYNLAKSHSEISVAEIIHAVDEQIDATQC--GGHENCRDEGRCMTHDLWSAL 118
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIF 141
+ L ++ +V ++ S +KI
Sbjct: 119 NTKILEYLDGITLADMVASQKSGQKIL 145
>gi|332289844|ref|YP_004420696.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis
UMN179]
gi|330432740|gb|AEC17799.1| DNA-binding transcriptional regulator IscR [Gallibacterium anatis
UMN179]
Length = 156
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 4/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ P ++ I+E IS +L ++ L + G+V++ RG
Sbjct: 1 MKLTSKGRYAVTAILDIALNAGSGPVTLADISERQKISLSYLEQLFAKLRRHGLVKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +++I+I ++ A E+ +C K +C C S+ +K +
Sbjct: 61 PGGGYQLGYASEEISIGMIISAVNENVQATKC--KSKGNCQDGVQCLTHSLWQKLSDRIE 118
Query: 120 DVLTQYSIECLV-RNRSSIKKIFNA 143
D L + ++ LV + +++ + A
Sbjct: 119 DFLNEITVAELVSSQQEKMQQRYRA 143
>gi|148546115|ref|YP_001266217.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida F1]
gi|148510173|gb|ABQ77033.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida F1]
Length = 182
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 20 MRLTTKGRYAVTAMLDLALHAKHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + I + V+ A ES C DC +C +
Sbjct: 80 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 137
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV+ R
Sbjct: 138 EFLSGISLADLVKRRD 153
>gi|259416348|ref|ZP_05740268.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B]
gi|259347787|gb|EEW59564.1| putative transcriptional regulator [Silicibacter sp. TrichCH4B]
Length = 155
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 81/143 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA++ S+IA+ C ISE L +++ L + G ++T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCALNEGRLVTKSEIAQRCNISENHLAQVVNQLSQLGFLKTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R AD+I I DV + E + ECFA CPLV +C L L +A AF+
Sbjct: 61 NGGLNLSRSADEICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALSRAGEAFYS 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L ++E L + +++I
Sbjct: 121 ALDGVTLESLTCDNFDLQRILAP 143
>gi|139438966|ref|ZP_01772426.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC
25986]
gi|133775677|gb|EBA39497.1| Hypothetical protein COLAER_01432 [Collinsella aerofaciens ATCC
25986]
Length = 142
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H + +IA ISE +L IL LV+A ++ +RG
Sbjct: 1 MLVSTKGRYALRVMVDLAEHQAAGRIPLKEIAARQGISEKYLENILATLVRANMLSGMRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG L RP +Q T+ ++++ TE S C C C V +
Sbjct: 61 KGGGYVLTRPPEQYTVGEILRLTEGSLAPVACLDGDCKGCSRSDECPTLDVWKNLDKLIN 120
Query: 120 DVLTQYSIECLVR 132
D L +++ LV
Sbjct: 121 DYLDGVTLDQLVA 133
>gi|323489216|ref|ZP_08094448.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2]
gi|323397103|gb|EGA89917.1| HTH-type transcriptional regulator [Planococcus donghaensis MPA1U2]
Length = 144
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+ +RVL+Y D I +I+EA IS+ L K+ L KAG ++TVRG
Sbjct: 1 MRLTMYTDFSLRVLIYLGTKKPDKLTTIQEISEAYNISKNHLTKVTFELGKAGFIQTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL I + VV+ E+ F + ECF CP+ CGL VL KAL+A+
Sbjct: 61 RGGGIRLADLPQNINVGTVVRKMEDDFHLVECFDPATNRCPISPVCGLRGVLGKALHAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++E L+ N+ +++I
Sbjct: 121 TVLDEYTLEDLLFNKEGLREIL 142
>gi|292489066|ref|YP_003531953.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
CFBP1430]
gi|292900194|ref|YP_003539563.1| transcriptional regulator [Erwinia amylovora ATCC 49946]
gi|291200042|emb|CBJ47167.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946]
gi|291554500|emb|CBA22046.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
CFBP1430]
gi|312173222|emb|CBX81477.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC
BAA-2158]
Length = 165
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + AD I + V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
D L ++ LV N+ +
Sbjct: 119 DFLNNITLAELVNNQEIL 136
>gi|259907700|ref|YP_002648056.1| DNA-binding transcriptional regulator IscR [Erwinia pyrifoliae
Ep1/96]
gi|224963322|emb|CAX54807.1| transcriptional regulator [Erwinia pyrifoliae Ep1/96]
gi|283477554|emb|CAY73470.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM
12163]
gi|310764792|gb|ADP09742.1| DNA-binding transcriptional regulator IscR [Erwinia sp. Ejp617]
Length = 165
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + AD I + V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
D L ++ LV N+ +
Sbjct: 119 DFLNNITLAELVNNQEIL 136
>gi|240949678|ref|ZP_04754013.1| putative HTH-type transcriptional regulator [Actinobacillus minor
NM305]
gi|240295936|gb|EER46612.1| putative HTH-type transcriptional regulator [Actinobacillus minor
NM305]
Length = 150
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ AIH + P ++ IA+ IS +L ++ L + GIV +VRG
Sbjct: 1 MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + I++ ++ A E+ V +C S +C C ++ +
Sbjct: 61 PGGGYKLEKSPKDISVGMIIAAVNENVDVTKCKGSG--NCRKDSKCLTHTLWERLEEQIG 118
Query: 120 DVLTQYSIECLVRNRSS 136
L S+E LV+ S
Sbjct: 119 VFLNTVSLEDLVKENSD 135
>gi|167037461|ref|YP_001665039.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040123|ref|YP_001663108.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp.
X514]
gi|256752922|ref|ZP_05493755.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
ethanolicus CCSD1]
gi|289578240|ref|YP_003476867.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thermoanaerobacter italicus Ab9]
gi|297544520|ref|YP_003676822.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|300914207|ref|ZP_07131523.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
X561]
gi|307265215|ref|ZP_07546774.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
wiegelii Rt8.B1]
gi|307724558|ref|YP_003904309.1| BadM/Rrf2 family transcriptional regulator [Thermoanaerobacter sp.
X513]
gi|320115875|ref|YP_004186034.1| Rrf2 family transcriptional regulator [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|326390150|ref|ZP_08211711.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
ethanolicus JW 200]
gi|166854363|gb|ABY92772.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
X514]
gi|166856295|gb|ABY94703.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|256748202|gb|EEU61273.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
ethanolicus CCSD1]
gi|289527953|gb|ADD02305.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
italicus Ab9]
gi|296842295|gb|ADH60811.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|300889142|gb|EFK84288.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
X561]
gi|306919837|gb|EFN50052.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
wiegelii Rt8.B1]
gi|307581619|gb|ADN55018.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter sp.
X513]
gi|319928966|gb|ADV79651.1| transcriptional regulator, Rrf2 family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|325993798|gb|EGD52229.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacter
ethanolicus JW 200]
Length = 149
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YGI+ + A++ + P + IAE +SE +L +++ L KA +V++VRG
Sbjct: 1 MKLSTKGRYGIQAMFELALYYGEGPISLKTIAENEGLSEHYLEQLIAILRKADLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L P D+IT+ DV++ E S A+C +C G C V+ + ++
Sbjct: 61 AQGGYMLAAPPDKITVGDVIRTLEGSLAPADCVLEDTPFECSRAGGCPTKLVMERIRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V+ +++ +V + + +
Sbjct: 121 NKVIDSITLQDMVDDYRRLNQ 141
>gi|144899516|emb|CAM76380.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 154
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ + H+ P ++ IAE IS +L ++ L K G+V++VRG
Sbjct: 1 MKLSTKGRYAVMAMVDLSSHSQGSPVALADIAERQEISLSYLEQLFGKLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L RPA Q+ I D++ A +E C C G C + + N
Sbjct: 61 PGGGYLLSRPAVQMRISDIILAVDEPIQTTRCSPGSPAGCHHNKGRCLTHDLWEELGNQI 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L+ S+ + R
Sbjct: 121 YLYLSAVSLADVCERR 136
>gi|331269734|ref|YP_004396226.1| BadM/Rrf2 family transcriptional regulator [Clostridium botulinum
BKT015925]
gi|329126284|gb|AEB76229.1| transcriptional regulator, BadM/Rrf2 family [Clostridium botulinum
BKT015925]
Length = 144
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ AI+ + P I IA ISEL+L ++ PL KA ++++VRG
Sbjct: 1 MKLSTKGRYGVRAMVDLAINYGESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +I++ D++ E ++ C S +C + C + K N+
Sbjct: 61 AQGGYVLNKHPKEISVSDIIDVLEGPIEISSCIDSG--ECNNMEVCPTRLLWEKIKNSID 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
+V +++ + + +K
Sbjct: 119 EVTQSITLQDMANDYKRLK 137
>gi|326794498|ref|YP_004312318.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Marinomonas mediterranea MMB-1]
gi|326545262|gb|ADZ90482.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas
mediterranea MMB-1]
Length = 166
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+D P +S I+ IS +L ++ L K +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDKGPVSLSDISARQGISLSYLEQLFAKLRKQSLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I + +V A ES C DC +C + +
Sbjct: 61 PGGGYLLSRERSDIFVAQIVDAVNESVDATGCRGRS--DCQGGTTCLTHHLWCDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+ S+E LV+ +
Sbjct: 119 DFLSGISLEKLVQRKD 134
>gi|254427452|ref|ZP_05041159.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax
sp. DG881]
gi|196193621|gb|EDX88580.1| iron-sulfur cluster assembly transcription factor IscR [Alcanivorax
sp. DG881]
Length = 156
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG
Sbjct: 3 MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R ++QI + V+ A +ES C DC +C + +
Sbjct: 63 PGGGYQLSRESEQIDVAAVIAAVDESVDATRC--GGHGDCQEGDTCLTHHLWCDLSDQIQ 120
Query: 120 DVLTQYSIECLVRNRS 135
D L+ ++ LV +
Sbjct: 121 DFLSGITLGELVARQE 136
>gi|51102912|gb|AAT96061.1| rrf2 family protein [Pseudomonas viridiflava]
Length = 163
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + VV A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|78355694|ref|YP_387143.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78218099|gb|ABB37448.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 146
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 4/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R+ YG R+L+ A+H +D P I +IA+ IS +L K+++ L AG + +
Sbjct: 1 MKLTTRSRYGTRMLLDIAMHTHGDDQPVSIKEIADRQGISMKYLEKLIRVLKGAGYISSR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
G +GG L RP + I + DVV A EE+ EC CP + C ++ +A A
Sbjct: 61 LGSKGGYMLARPPESILLGDVVFALEETVPTFECVDPE-PCCPRMDYCLTRTIWNEAAKA 119
Query: 118 FFDVLTQYSIECLVRNRS 135
++ L +++ L+ +
Sbjct: 120 MYEKLNSFTLADLINDAE 137
>gi|237733110|ref|ZP_04563591.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383792|gb|EEO33883.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 147
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y IRV++ A+H+D + IA+ ++ +L +I+ L KAG ++++RG
Sbjct: 4 MKISTKGRYAIRVILDIAMHDDGKYIPLKDIAKRQDLTVKYLEQIISLLNKAGYLQSLRG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + ++ I D+++ TE C +C C +
Sbjct: 64 NAGGYRLSKKPEECIIGDILRITEGDLAPIPCLKDEINNCSRANECITLPFWQGLDKVIK 123
Query: 120 DVLTQYSIECLVRNRS 135
D + +I+ L+ + +
Sbjct: 124 DYVESVTIQDLIDHAN 139
>gi|23500306|ref|NP_699746.1| iron-responsive transcriptional regulator [Brucella suis 1330]
gi|161620624|ref|YP_001594510.1| iron-responsive transcriptional regulator [Brucella canis ATCC
23365]
gi|254702937|ref|ZP_05164765.1| iron-responsive transcriptional regulator [Brucella suis bv. 3 str.
686]
gi|260568151|ref|ZP_05838620.1| RrF2 family protein [Brucella suis bv. 4 str. 40]
gi|261753543|ref|ZP_05997252.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
gi|23463917|gb|AAN33751.1| RrF2 family protein [Brucella suis 1330]
gi|161337435|gb|ABX63739.1| rrf2 family protein [Brucella canis ATCC 23365]
gi|260154816|gb|EEW89897.1| RrF2 family protein [Brucella suis bv. 4 str. 40]
gi|261743296|gb|EEY31222.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
Length = 153
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLVK G+VETVRGR
Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVKHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 61 DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142
>gi|124515741|gb|EAY57250.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
rubarum]
gi|206602245|gb|EDZ38727.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
Group II '5-way CG']
Length = 169
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 77/141 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY IRVL+Y + D P IS++AE+ IS L K++ L ++G + T RG+
Sbjct: 1 MQLTLYSDYSIRVLLYLSAKTDGPATISEVAESYGISRNHLVKVVHNLSQSGYIRTTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG+ L R +I+I +++ TE F + EC CP+ C L +V R AL AF
Sbjct: 61 KGGMVLGRDPKEISIGGLLRQTEPDFRLVECLQEESSGCPIDQVCSLKAVFRTALYAFLK 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ + N +K I
Sbjct: 121 TLDGYTLADITGNVGLLKPIL 141
>gi|49080808|gb|AAT50060.1| PA3815 [synthetic construct]
Length = 164
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV +
Sbjct: 119 EFLSGISLADLVSRQE 134
>gi|322417974|ref|YP_004197197.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
gi|320124361|gb|ADW11921.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
Length = 152
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A + P +I I+ IS +L +I Q L K GI+++ RG
Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGSQPAQIQDISRRQDISPRYLEQIFQGLKKHGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT+ V++ATE + +C K +C GSC +V ++ +
Sbjct: 61 PQGGYCLAKSPEDITVRAVIEATEGDTLIVDCSGRRKGECGFDGSCVTQTVWEESNSRLN 120
Query: 120 DVLTQYSIECLVRNRSSI 137
+ +++ L S+
Sbjct: 121 EFFESITLKTLCDRGESL 138
>gi|109897562|ref|YP_660817.1| BadM/Rrf2 family transcriptional regulator [Pseudoalteromonas
atlantica T6c]
gi|332307518|ref|YP_004435369.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica
4H-3-7+YE-5]
gi|109699843|gb|ABG39763.1| transcriptional regulator, BadM/Rrf2 family [Pseudoalteromonas
atlantica T6c]
gi|332174847|gb|AEE24101.1| transcriptional regulator, BadM/Rrf2 family [Glaciecola agarilytica
4H-3-7+YE-5]
Length = 161
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L + +V++VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQRGPVSLADISERQEISLSYLEQLFSRLRREKLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I I +V++A +ES C + DC C S+ +
Sbjct: 61 PGGGYKLGRQPSDIPIGEVIRAVDESVDATRC--QGQSDCQGGERCLTHSLWQDLSERIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+
Sbjct: 119 LFLDGITLGELMAQHD 134
>gi|323704140|ref|ZP_08115719.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
xylanolyticum LX-11]
gi|323536206|gb|EGB25978.1| transcriptional regulator, BadM/Rrf2 family [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 149
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 74/141 (52%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A++ + P + IAE +SE +L +++ L KA +V+++RG
Sbjct: 1 MRLSTKGRYGVQAMFELALYYGEGPISLKVIAENEGLSEHYLEQLIAVLRKADLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L P D+IT+ DV++ E S ++C +C G C VL K +A
Sbjct: 61 AQGGYMLSAPPDKITVGDVIRTLEGSLAPSDCVVEDIPFECSRSGGCPTKVVLEKIRDAI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V+ +++ +V + + +
Sbjct: 121 NKVIDSITLQDMVDDYKKMIQ 141
>gi|302874700|ref|YP_003843333.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
gi|307690687|ref|ZP_07633133.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
cellulovorans 743B]
gi|302577557|gb|ADL51569.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
Length = 140
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A+H P I I++ ISE +L ++ L KA +++++RG
Sbjct: 1 MKLSTKGRYGVKAMFDLAVHYGSEPISIKSISDRQGISENYLEQLFSTLRKAELIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +IT+ D+ E V++C + C +GSCG + K N+F
Sbjct: 61 AQGGYMLNKLPAEITVADIFDVLEGPIEVSDCIDENC--CSKIGSCGTRGLWIKIKNSFD 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
+V +++ +V + + K
Sbjct: 119 EVTQSVTLQDMVDDYNKNK 137
>gi|289208504|ref|YP_003460570.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thioalkalivibrio sp. K90mix]
gi|288944135|gb|ADC71834.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
K90mix]
Length = 159
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + +M AIH+ P ++ I++ IS +L ++ L KA +VE VRG
Sbjct: 1 MKLSTKGRYAVTAMMDLAIHDRVGPVTLADISQCQGISLSYLEQLFAKLRKADLVEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + ADQI+I +++ A +ES V C DC C + +
Sbjct: 61 PGGGYRLAKRADQISIANIITAVDESVDVTRC--KGHKDCQDGERCLTHELWDDLSQQLY 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
D L ++ NR ++K+
Sbjct: 119 DFLDGITLAQFA-NRPEVQKV 138
>gi|254242506|ref|ZP_04935828.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|126195884|gb|EAZ59947.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
Length = 163
Score = 131 bits (331), Expect = 2e-29, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV +
Sbjct: 119 EFLSGISLADLVSRQE 134
>gi|119899391|ref|YP_934604.1| AAU3 protein [Azoarcus sp. BH72]
gi|119671804|emb|CAL95718.1| AAU3 protein precursor [Azoarcus sp. BH72]
Length = 153
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ +DY +RVLMY H D + +++IA A ISE L K++ L ++G V+T+RG+
Sbjct: 1 MRLSTFSDYCLRVLMYLGEHADRLSTVAEIARAHDISESHLTKVVHQLGRSGYVDTLRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R +I + +V++ TE F + ECF C + G+C L +VL +AL A F
Sbjct: 61 GGGMRLARAPREIVLGEVLRQTETDFALVECFGDE-PHCYMEGACQLQAVLGEALGAMFR 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL Y++ L++ ++
Sbjct: 120 VLDGYTLADLLQRPDGSTRVL 140
>gi|313112815|ref|ZP_07798462.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310624885|gb|EFQ08193.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 152
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG
Sbjct: 1 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + T ++++A E S C S +CP+ C
Sbjct: 61 SQGGYRLTKAPADYTAGEILRAIEGSVAPIPCLGSETNECPMWEQCFTLPFWTGLDEVIN 120
Query: 120 DVLTQYSIECL 130
+ ++E L
Sbjct: 121 QYIDSVTLEQL 131
>gi|56420273|ref|YP_147591.1| hypothetical protein GK1738 [Geobacillus kaustophilus HTA426]
gi|261419938|ref|YP_003253620.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y412MC61]
gi|297530100|ref|YP_003671375.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. C56-T3]
gi|319766752|ref|YP_004132253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y412MC52]
gi|81347283|sp|Q5KZ63|NSRR_GEOKA RecName: Full=HTH-type transcriptional regulator nsrR
gi|56380115|dbj|BAD76023.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261376395|gb|ACX79138.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y412MC61]
gi|297253352|gb|ADI26798.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
C56-T3]
gi|317111618|gb|ADU94110.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y412MC52]
Length = 147
Score = 131 bits (331), Expect = 3e-29, Method: Composition-based stats.
Identities = 58/142 (40%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT T+Y +RVL++ A+ + I IA A ISE L KI+ L K G +ET+RG
Sbjct: 1 MQLTNYTEYALRVLLFLGALDEEEKTNIKDIAAAFSISEHHLSKIVYELGKLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + +I I VV+ TEE+ + ECFA+H +C L C L L +AL AF
Sbjct: 61 RNGGIRLAKRPAEIVIGAVVRETEENLSLVECFAAHGNECVLTPVCRLRFALHEALEAFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL Y++ L+ +R+S++ +
Sbjct: 121 RVLDAYTLADLLEDRASLRSLL 142
>gi|298290421|ref|YP_003692360.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Starkeya novella DSM 506]
gi|296926932|gb|ADH87741.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
506]
Length = 151
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +DY +RV++Y A D P IS++A A IS+ L K++ L +AG V + RGR
Sbjct: 1 MRLTRYSDYAMRVMLYLAARGDRPCSISEMAAAYGISQNHLMKVMNDLGRAGYVASTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA++I + D+++ TE+ + +C C L CGL+SVL +AL AF
Sbjct: 61 NGGFRLARPANEIVVGDLLRHTEDDLDLVDC-----PRCVLSRGCGLSSVLDEALMAFLA 115
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL +Y++ L+ R + +
Sbjct: 116 VLDRYTLADLIDRRQGFQSLL 136
>gi|260550152|ref|ZP_05824366.1| transcriptional regulator [Acinetobacter sp. RUH2624]
gi|260406907|gb|EEX00386.1| transcriptional regulator [Acinetobacter sp. RUH2624]
Length = 157
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + ++ L+ +
Sbjct: 119 DYLAKITLADLISRDN 134
>gi|218133327|ref|ZP_03462131.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC
43243]
gi|217992200|gb|EEC58204.1| hypothetical protein BACPEC_01192 [Bacteroides pectinophilus ATCC
43243]
Length = 147
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV+ A H + +I+ IS +L I+ L K +V + G
Sbjct: 1 MMISTKGRYALRVMTDLAQHGTGDFIPLKEISARQGISLKYLESIMTILSKGHMVRSASG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG L + ++ + D+++ TE C A C L C + +A
Sbjct: 61 KGGGYCLIKSPEEYRVGDILRLTEGDLAPVACLAPDTKKCDLTNECYTLPFWKGLGDAIN 120
Query: 120 DVLTQYSIECLV 131
+ L +++ LV
Sbjct: 121 EYLDGHTLADLV 132
>gi|71907577|ref|YP_285164.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica
RCB]
gi|71847198|gb|AAZ46694.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas
aromatica RCB]
Length = 167
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + +M A+ D P ++ I+E IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMMDLALRGDDGPVALASISERQKISLSYLEQLFGKLRRYKLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + RP + + + D+++A +E +C + +C C + F
Sbjct: 61 PGGGYCIARPLELVRVADIIRAVDEQLDATQC--GGRENCHDEHRCMTHDLWTTLNVKMF 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L+ ++ LV +
Sbjct: 119 DYLSSVTLADLVERERQKR 137
>gi|77361587|ref|YP_341162.1| transcriptional repressor of the iscRSUA operon, involved in
assembly of Fe-S clusters [Pseudoalteromonas
haloplanktis TAC125]
gi|76876498|emb|CAI87720.1| transcriptional repressor of the iscRSUA operon, involved in
assembly of Fe-S clusters [Pseudoalteromonas
haloplanktis TAC125]
Length = 163
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD I++ DV+ A +ES C I C C ++ +
Sbjct: 61 PGGGYLLGRKADAISVGDVINAVDESVDATRC-QKSDIGCQSGMRCLTHNLWSELSARIE 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L ++ LV +S +K+I
Sbjct: 120 EFLDNITLAELVE-KSDVKEI 139
>gi|127513246|ref|YP_001094443.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica
PV-4]
gi|126638541|gb|ABO24184.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica
PV-4]
Length = 153
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTSGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I++ VV+A +ES C +C C S+
Sbjct: 61 PGGGYRLGFDASDISVGMVVRAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 119 DFLNGISLAGLMNKRD 134
>gi|255283408|ref|ZP_05347963.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
formatexigens DSM 14469]
gi|255266056|gb|EET59261.1| iron-sulfur cluster assembly transcription factor IscR [Bryantella
formatexigens DSM 14469]
Length = 152
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A++ + IS +A ISE +L ++ L KAG++ + RG
Sbjct: 1 MKLSTKGRYGLRALIDLAVYCGEEAVPISSVAARQGISESYLEQLFAKLRKAGLIISERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
+GG RL +PA++I++ D+++A E + EC + C C V ++ +
Sbjct: 61 AQGGYRLAKPAEEISVGDILRALEGNLDAVECPGLKEEAGCENADFCVTKYVWQRINESI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ + + ++ LVR +
Sbjct: 121 TEAVDEIRLDQLVRESREAQD 141
>gi|154253130|ref|YP_001413954.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154157080|gb|ABS64297.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
lavamentivorans DS-1]
Length = 145
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 85/141 (60%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+L Y A+ D IS++AE+ IS L K+ L +AG VET+RGR
Sbjct: 1 MRLTLHTDYALRLLTYLALKPDEIATISEVAESYSISRNHLTKVAHELGRAGFVETLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R A +I I DVV+A EE F + ECFA+ C + +C L VL++AL+A+
Sbjct: 61 GGGLRLARAAGKIGIGDVVRAMEEDFCIVECFAAETDRCRIGPACRLKRVLKQALDAWLA 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL ++ LV ++++
Sbjct: 121 VLDDTTLADLVERPQPLRRLL 141
>gi|253988842|ref|YP_003040198.1| DNA-binding transcriptional regulator IscR [Photorhabdus
asymbiotica subsp. asymbiotica ATCC 43949]
gi|253780292|emb|CAQ83453.1| hth-type transcriptional regulator iscr [Photorhabdus asymbiotica]
Length = 164
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 67/138 (48%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +I + +V+ A +ES C K C C ++ R +
Sbjct: 61 PGGGYLLGRDAGKIVVAEVIFAVDESVDATRC--QGKEGCQGGDRCLTHALWRDLSDRIT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S++ LV N+ +
Sbjct: 119 SFLSSISLKELVNNQEVL 136
>gi|83647156|ref|YP_435591.1| iron-sulfur cluster assembly transcription factor IscR [Hahella
chejuensis KCTC 2396]
gi|83635199|gb|ABC31166.1| iron-sulfur cluster assembly transcription factor IscR [Hahella
chejuensis KCTC 2396]
Length = 159
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+ IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHGNSGPVSLADISARQGISLSYLEQLFAKLRRSRLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L RP + + ++++A ES C K DC C + +
Sbjct: 61 PGGGYKLARPLGETAVAEIIEAVNESIDATRC--GRKGDCQGGEICLTHHLWQDLSERIH 118
Query: 120 DVLTQYSIECLVRNR 134
D L+ S+E LV +R
Sbjct: 119 DYLSSISLEELVASR 133
>gi|257465488|ref|ZP_05629859.1| putative HTH-type transcriptional regulator [Actinobacillus minor
202]
gi|257451148|gb|EEV25191.1| putative HTH-type transcriptional regulator [Actinobacillus minor
202]
Length = 150
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ AIH + P ++ IA+ IS +L ++ L + GIV +VRG
Sbjct: 1 MRLTSRGRYAVTAILDIAIHGKEEPVSLADIADRQAISLSYLEQLFAQLRRDGIVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + +I++ ++ A ES V +C S +C +C ++ +
Sbjct: 61 PGGGYKLEKSPKEISVGMIIAAVNESVDVTKCKGSG--NCRKDSTCLTHTLWERLEEQIG 118
Query: 120 DVLTQYSIECLVRNRSS 136
L S+E LV+ S
Sbjct: 119 VFLNTVSLEDLVKENSD 135
>gi|66044484|ref|YP_234325.1| transcription factor IscR [Pseudomonas syringae pv. syringae B728a]
gi|71736670|ref|YP_273566.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|257487211|ref|ZP_05641252.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. tabaci ATCC 11528]
gi|289626165|ref|ZP_06459119.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. aesculi str. NCPPB3681]
gi|289649071|ref|ZP_06480414.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. aesculi str. 2250]
gi|289677962|ref|ZP_06498852.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. syringae FF5]
gi|298486011|ref|ZP_07004085.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|302185757|ref|ZP_07262430.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. syringae 642]
gi|63255191|gb|AAY36287.1| Protein of unknown function UPF0074:Iron-sulphur cluster assembly
transcription factor IscR [Pseudomonas syringae pv.
syringae B728a]
gi|71557223|gb|AAZ36434.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. phaseolicola 1448A]
gi|298159488|gb|EFI00535.1| Iron-sulfur cluster regulator IscR [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|320322933|gb|EFW79023.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. glycinea str. B076]
gi|320329944|gb|EFW85932.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330869589|gb|EGH04298.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. aesculi str. 0893_23]
gi|330874670|gb|EGH08819.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. glycinea str. race 4]
gi|330894481|gb|EGH27142.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. mori str. 301020]
gi|330895877|gb|EGH28162.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. japonica str. M301072PT]
gi|330936997|gb|EGH41093.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. pisi str. 1704B]
gi|330950800|gb|EGH51060.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae Cit 7]
gi|330969082|gb|EGH69148.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. aceris str. M302273PT]
gi|330975891|gb|EGH75957.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. aptata str. DSM 50252]
gi|330985002|gb|EGH83105.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. lachrymans str. M301315]
gi|331009174|gb|EGH89230.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
syringae pv. tabaci ATCC 11528]
Length = 163
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + VV A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMKGIQVAQVVDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|256015338|ref|YP_003105347.1| RrF2 family protein [Brucella microti CCM 4915]
gi|255997998|gb|ACU49685.1| RrF2 family protein [Brucella microti CCM 4915]
Length = 153
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 106/142 (74%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F + ECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMTECFENDASECPLVDSCGLNAALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142
>gi|148263560|ref|YP_001230266.1| BadM/Rrf2 family transcriptional regulator [Geobacter
uraniireducens Rf4]
gi|146397060|gb|ABQ25693.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
uraniireducens Rf4]
Length = 141
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R Y +R ++ +++ D P + +IA+ I +L ++ L GIV ++RG
Sbjct: 1 MRLSTRAQYAVRAMVDLSLYATDKPVSLKEIAQREDIPLSYLEQLFFRLKNGGIVTSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R + I + ++V EE C C V C ++ +
Sbjct: 61 PGGGYILARNSALIKVGEIVVTVEEPLSPVACMDEGSTGCSRVSRCVTHNIWKDLGERIR 120
Query: 120 DVLTQYSIECLVRNRSS 136
L ++E L
Sbjct: 121 GFLDAITLEDLTHEARE 137
>gi|153813655|ref|ZP_01966323.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174]
gi|149830271|gb|EDM85364.1| hypothetical protein RUMOBE_04078 [Ruminococcus obeum ATCC 29174]
Length = 143
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y IRV++ A HN + IA+ ISE +L I+ L K V+ +RG
Sbjct: 1 MKISTRGRYAIRVMLDLAEHNNGEYIPLMDIAKRQEISEKYLESIVSVLSKQKFVKALRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R + TI +++ TE S C H C SC +
Sbjct: 61 KGGGYRLVRTPAEYTIGSILRITEGSMAPVACLDDHPNQCERASSCKTLQMWEGFYKLLN 120
Query: 120 DVLTQYSIECLVRN 133
+ ++E L+
Sbjct: 121 EYFDGITLEDLLEQ 134
>gi|163743993|ref|ZP_02151362.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10]
gi|161382753|gb|EDQ07153.1| rrf2 family protein [Phaeobacter gallaeciensis 2.10]
Length = 154
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 81/143 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA H D S+IA C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L +PA +I I DV + E + + ECFA CPLV +C L L +A AF+
Sbjct: 61 NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L ++E L+ + ++ +F
Sbjct: 121 SLDGITLEALICDNDALFALFQP 143
>gi|78484962|ref|YP_390887.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
crunogena XCL-2]
gi|78363248|gb|ABB41213.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
crunogena XCL-2]
Length = 142
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L +I L K+G+V + RG
Sbjct: 1 MKLTSKGRYAVTAMLDIALNQSKGPITLAMISERQDISLSYLEQIFAKLKKSGLVLSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A++I++ +V+ A E +C K +C C +
Sbjct: 61 PGGGYRLSRDANEISVSEVIGAVNEDLEPRKCRG--KSNCQNGVQCLSHELWADLSGMIN 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L +++ ++ RSSI+ +
Sbjct: 119 EFLDGVTLQQIIDRRSSIQSV 139
>gi|90410859|ref|ZP_01218873.1| hypothetical transcriptional regulator [Photobacterium profundum
3TCK]
gi|90328072|gb|EAS44383.1| hypothetical transcriptional regulator [Photobacterium profundum
3TCK]
Length = 172
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+ I + V+ A +ES +C K DC C ++ +
Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADCQGGVRCLTHTLWHDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+++ +
Sbjct: 119 GFLNNITLGELMKDNN 134
>gi|15599010|ref|NP_252504.1| IscR [Pseudomonas aeruginosa PAO1]
gi|107103335|ref|ZP_01367253.1| hypothetical protein PaerPA_01004404 [Pseudomonas aeruginosa PACS2]
gi|116051840|ref|YP_789317.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|152987595|ref|YP_001346682.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
aeruginosa PA7]
gi|218889901|ref|YP_002438765.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58]
gi|254236719|ref|ZP_04930042.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|296387669|ref|ZP_06877144.1| putative Rrf2 family protein [Pseudomonas aeruginosa PAb1]
gi|313109233|ref|ZP_07795201.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016]
gi|9949989|gb|AAG07202.1|AE004799_8 IscR [Pseudomonas aeruginosa PAO1]
gi|115587061|gb|ABJ13076.1| putative Rrf2 family protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126168650|gb|EAZ54161.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|150962753|gb|ABR84778.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
aeruginosa PA7]
gi|218770124|emb|CAW25886.1| putative Rrf2 family protein [Pseudomonas aeruginosa LESB58]
gi|310881703|gb|EFQ40297.1| putative Rrf2 family protein [Pseudomonas aeruginosa 39016]
Length = 163
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQQGPVSLADISERQGISLSYLEQLFAKLRRGNLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRHMSGIHVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV +
Sbjct: 119 EFLSGISLADLVSRQE 134
>gi|268609758|ref|ZP_06143485.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus
flavefaciens FD-1]
Length = 145
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L A H D + +IAE IS+ +L +I+ L K+ ++ T RG
Sbjct: 1 MKISTKGRYALRMLFDLASHYDEGFISLKEIAERQNISKKYLEQIVPLLNKSNLLRTNRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R A++IT+ DV++ATE S C +CP G C V ++
Sbjct: 61 NKGGYMLARKANEITVADVLEATEGSLAPVACLEFEPNECPRAGECSTLFVWEGLYSSIK 120
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S++ ++ + S +
Sbjct: 121 KYLSSISLQDIIDHSSDL 138
>gi|269140159|ref|YP_003296860.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda
EIB202]
gi|267985820|gb|ACY85649.1| transcriptional regulator, BadM/Rrf2 family [Edwardsiella tarda
EIB202]
gi|304559993|gb|ADM42657.1| Iron-sulfur cluster regulator IscR [Edwardsiella tarda FL6-60]
Length = 165
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I I V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKEASEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHALWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L S+ LV N+ +
Sbjct: 119 GFLNNISLAELVNNQEVM 136
>gi|188584942|ref|YP_001916487.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179349629|gb|ACB83899.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 155
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + +YG+R L++ A + N+ P + +I++ IS +L +I L + +V +VRG
Sbjct: 6 KLSTKGEYGVRALVHLACNYNEGPISLREISKIEDISYQYLEQIFLDLRRNSLVLSVRGA 65
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
+GG L +IT+ DV++A E C A S +C +C V + +
Sbjct: 66 KGGYTLASHPKEITVGDVIRAVEGPIAPVSCVAKSTNSENTECDRSSTCAPRGVWLELRD 125
Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
+VL +++++ L + I+K+
Sbjct: 126 RISEVLDEFTLQDLAVTDNDIEKL 149
>gi|320157286|ref|YP_004189665.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O]
gi|81844780|sp|Q8DEY6|ISCR_VIBVU RecName: Full=HTH-type transcriptional regulator iscR
gi|119371155|sp|Q7MNG3|ISCR_VIBVY RecName: Full=HTH-type transcriptional regulator iscR
gi|319932598|gb|ADV87462.1| iron-sulfur cluster regulator IscR [Vibrio vulnificus MO6-24/O]
Length = 168
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I+I V+ A +ES +C K DC C ++ R +
Sbjct: 61 PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + I+
Sbjct: 119 DFLNNITLGELMSDNEVIE 137
>gi|209694305|ref|YP_002262233.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238]
gi|226711609|sp|B6EGX4|ISCR_ALISL RecName: Full=HTH-type transcriptional regulator iscR
gi|208008256|emb|CAQ78401.1| HTH-type transcriptional regulator [Aliivibrio salmonicida LFI1238]
Length = 168
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 42/153 (27%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL D+I + V+ A +ES +C C C ++ R +
Sbjct: 61 PGGGYRLGLKPDEIAVGMVISAVDESVDATKCHGKEG--CQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECL--------VRNRSSIKKIFNAG 144
L S+ L V +R +I N G
Sbjct: 119 SFLDGISLGELMVDNEVQQVSDRQNIDAALNNG 151
>gi|160893212|ref|ZP_02074000.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50]
gi|156865295|gb|EDO58726.1| hypothetical protein CLOL250_00758 [Clostridium sp. L2-50]
Length = 145
Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 69/138 (50%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y I++++ A + N P +I IA IS+ +L +I+ L KA +V++VRG
Sbjct: 1 MKISTKGRYAIKLMLDLATYYNGEPVKIKDIARRQHISDKYLEQIVAILNKASLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L + T+ +++ E S A+C ++ C C + K A
Sbjct: 61 ARGGYMLYASPENYTVRQILETVEGSLAPADCVGANAAYCENRSMCVSVLIWEKLDQAIQ 120
Query: 120 DVLTQYSIECLVRNRSSI 137
DVL ++ LV ++++
Sbjct: 121 DVLEGITLADLVDWQNNL 138
>gi|330504691|ref|YP_004381560.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
NK-01]
gi|328918977|gb|AEB59808.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas mendocina
NK-01]
Length = 165
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRDMRGIQVAQVIDAVNESVDATRCQGQG--DCHSGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVVRRE 134
>gi|56461141|ref|YP_156422.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis
L2TR]
gi|56180151|gb|AAV82873.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina
loihiensis L2TR]
Length = 159
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 67/143 (46%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+ + P ++ I+E IS +L ++ L K G+V++VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALFTANGPVPLADISERQGISLSYLEQLFSRLRKHGLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+ I++ V+ A +ES C K +C C S+ +
Sbjct: 61 PGGGYRLGCAANDISVGAVIHAVDESIDATRC--QGKANCQGGERCLTHSLWEGLSDRIS 118
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
D L ++ L++ + + + N
Sbjct: 119 DFLDGITLAELMK-KEDVGDVLN 140
>gi|229827945|ref|ZP_04454014.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC
49176]
gi|229787880|gb|EEP23994.1| hypothetical protein GCWU000182_03337 [Abiotrophia defectiva ATCC
49176]
Length = 144
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A H + + IA+ +S+ +L +I+ L AG++ T RG
Sbjct: 1 MKISTKGRYALRLMVDLAEHKESGFIALKDIAKRQNVSKKYLEQIVPVLNGAGLLTTNRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L + + T+ D+++ TE S C + C C V +
Sbjct: 61 NRGGYKLSKEPSEYTVGDILRTTEGSVAPVSCLETEVNYCERKDCCQTLFVWKGLYKVVN 120
Query: 120 DVLTQYSIECLVRNRSS 136
+ L +++ ++ S+
Sbjct: 121 EYLDSITVQDILDRSSA 137
>gi|15894952|ref|NP_348301.1| transcriptional regulator [Clostridium acetobutylicum ATCC 824]
gi|15024637|gb|AAK79641.1|AE007677_3 Predicted transcriptional regulator (HTH winged helix type)
[Clostridium acetobutylicum ATCC 824]
gi|325509089|gb|ADZ20725.1| transcriptional regulator (HTH winged helix type) [Clostridium
acetobutylicum EA 2018]
Length = 139
Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ AIH P I I+E ISE +L ++ PL K+G+++++RG
Sbjct: 1 MKLSTKGRYGVKAMVDLAIHYGAEPVSIKSISERQKISEAYLEQLFVPLRKSGLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I I ++ E +++C S C C + K +
Sbjct: 61 SQGGYVLSKDPKDIHISNIFDVLEGPIEISDCVESD--SCDNSDYCVTRLLWVKIKESID 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
+V +++ +V + +SIK
Sbjct: 119 NVTKTITLKDMVDDYNSIK 137
>gi|188533165|ref|YP_001906962.1| DNA-binding transcriptional regulator IscR [Erwinia tasmaniensis
Et1/99]
gi|226711618|sp|B2VI31|ISCR_ERWT9 RecName: Full=HTH-type transcriptional regulator iscR
gi|188028207|emb|CAO96065.1| Predicted transcriptional regulator [Erwinia tasmaniensis Et1/99]
Length = 165
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + AD I + V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKAADAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
D L ++ LV N+ +
Sbjct: 119 DFLNNITLAELVNNQEIL 136
>gi|261345349|ref|ZP_05972993.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
rustigianii DSM 4541]
gi|282566392|gb|EFB71927.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
rustigianii DSM 4541]
Length = 165
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +DQI + +V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGRGSDQIFVAEVIAAVDESVDATRCQGN-KEGCQNGDRCLTHALWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S++ LV+N+ +
Sbjct: 120 SFLSSISLDELVKNQEVL 137
>gi|54307944|ref|YP_128964.1| transcriptional regulator [Photobacterium profundum SS9]
gi|81615497|sp|Q6LU63|ISCR_PHOPR RecName: Full=HTH-type transcriptional regulator iscR
gi|46912370|emb|CAG19162.1| hypothetical transcriptional regulator [Photobacterium profundum
SS9]
Length = 172
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+ I + V+ A +ES +C K DC C ++ +
Sbjct: 61 PGGGYRLGEDANDIAVGMVIAAVDESVDATKCHG--KADCQGGVRCLTHTLWHDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+R+ +
Sbjct: 119 GFLNNITLGELMRDNN 134
>gi|310658799|ref|YP_003936520.1| DNA-binding transcriptional repressor [Clostridium sticklandii DSM
519]
gi|308825577|emb|CBH21615.1| DNA-binding transcriptional repressor [Clostridium sticklandii]
Length = 148
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + YG++ + A+ + P + IA+ +SE +L +I L K+G+V++VR
Sbjct: 1 MKLSTKGRYGLKAIFELALKEEENLPLSLKYIADKNGLSEQYLEQIFAILKKSGLVKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L +P+ QIT+ V++A E ++C DC C V ++ ++
Sbjct: 61 GAQGGYYLSKPSSQITVGQVLRALEGPMAPSDCVLEEDADCENSDFCVTKVVWQRIKDSV 120
Query: 119 FDVLTQYSIECLVRNRS 135
V+ +++ +V +
Sbjct: 121 DSVIDSVTLKDMVLDHK 137
>gi|126698875|ref|YP_001087772.1| transcriptional regulator [Clostridium difficile 630]
gi|254974823|ref|ZP_05271295.1| transcriptional regulator [Clostridium difficile QCD-66c26]
gi|255092211|ref|ZP_05321689.1| transcriptional regulator [Clostridium difficile CIP 107932]
gi|255100296|ref|ZP_05329273.1| transcriptional regulator [Clostridium difficile QCD-63q42]
gi|255306235|ref|ZP_05350407.1| transcriptional regulator [Clostridium difficile ATCC 43255]
gi|255313950|ref|ZP_05355533.1| transcriptional regulator [Clostridium difficile QCD-76w55]
gi|255516630|ref|ZP_05384306.1| transcriptional regulator [Clostridium difficile QCD-97b34]
gi|255649729|ref|ZP_05396631.1| transcriptional regulator [Clostridium difficile QCD-37x79]
gi|255655290|ref|ZP_05400699.1| transcriptional regulator [Clostridium difficile QCD-23m63]
gi|260682885|ref|YP_003214170.1| RRF2 family transcriptional regulator [Clostridium difficile CD196]
gi|260686483|ref|YP_003217616.1| RRF2 family transcriptional regulator [Clostridium difficile
R20291]
gi|296451274|ref|ZP_06893014.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
gi|296880374|ref|ZP_06904337.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
gi|306519839|ref|ZP_07406186.1| RRF2-family transcriptional regulator [Clostridium difficile
QCD-32g58]
gi|115250312|emb|CAJ68134.1| Transcriptional regulator, Rrf2 family (Transcriptional regulator
of cysteine biosynthesis) [Clostridium difficile]
gi|260209048|emb|CBA62167.1| RRF2-family transcriptional regulator [Clostridium difficile CD196]
gi|260212499|emb|CBE03426.1| RRF2-family transcriptional regulator [Clostridium difficile
R20291]
gi|296259880|gb|EFH06735.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP08]
gi|296428615|gb|EFH14499.1| Rrf2 family transcriptional regulator [Clostridium difficile NAP07]
Length = 148
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 70/139 (50%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A++ D P + IA+ IS+ +L +I L K+G+V++VRG
Sbjct: 1 MKLSTKGRYGLKAMFELALNQDNGPVSLKFIAKKQKISDQYLEQIFSSLKKSGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + A+ IT+ D++ E +++C + C C V K
Sbjct: 61 AQGGYLLSKNAEDITVGDILVVLEGPVALSDCVLDEDV-CENSNMCVTKIVWEKMKKGIE 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
DV+ +++ ++ + + K
Sbjct: 120 DVIDSITLKDMINDYNKNK 138
>gi|291545181|emb|CBL18290.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
18P13]
Length = 165
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R++ A H D I IA+ ISE +L +I+ L + G V + RG
Sbjct: 24 MKISTKGRYALRLMYELACHADEGYLNIRAIAQRQQISEKYLEQIIAMLSRGGCVISSRG 83
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL +P + T+ +++ TE C C C V NA
Sbjct: 84 AQGGYRLAKPPEAYTVGMILRLTEGCLAPVPCMQEGCAPCERAECCPTQFVWEALDNAIS 143
Query: 120 DVLTQYSIECLVRNRS 135
V+ + ++ +V +
Sbjct: 144 GVIDRITLADIVAHAR 159
>gi|332296703|ref|YP_004438625.1| transcriptional regulator, BadM/Rrf2 family [Treponema
brennaborense DSM 12168]
gi|332179806|gb|AEE15494.1| transcriptional regulator, BadM/Rrf2 family [Treponema
brennaborense DSM 12168]
Length = 152
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R ++ A+ ++D + I+ IS +L +I L K G++ +VRG
Sbjct: 1 MKISTRGRYALRFMIDLALQNSDQFIALKDISGRQEISVKYLEQITSLLGKYGLLRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG +L +PA Q TI ++++ TE + C + +CP C
Sbjct: 61 QQGGYKLAKPASQYTIGEILRITEGNLAPVACLDTAVNECPRCNQCKTLPFWEGLAATIN 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L ++ L S++ +
Sbjct: 121 SYLDSVTLADLAAQESAVAPV 141
>gi|325290069|ref|YP_004266250.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
glycolicus DSM 8271]
gi|324965470|gb|ADY56249.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
glycolicus DSM 8271]
Length = 165
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R YG+++++ A+H++ P + +A+ +SE +L +++ L KAG+V+++RG
Sbjct: 1 MRFSTRGRYGVQLMVDLALHSNNEPISLKSVADRQKLSEHYLEQLVPDLRKAGMVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+GG L + + I + D+++A E EC + C C V + ++
Sbjct: 61 AQGGYILAKKTEDIIVGDIIRALEGPIAPVECSGQKTENCCEKTNFCLTREVWVRVSDSI 120
Query: 119 FDVLTQYSIECLVRNRSS 136
D++ S+ LV+
Sbjct: 121 NDLVDSISLADLVQEAEK 138
>gi|294140361|ref|YP_003556339.1| Rrf2 family protein [Shewanella violacea DSS12]
gi|293326830|dbj|BAJ01561.1| Rrf2 family protein [Shewanella violacea DSS12]
Length = 167
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L + G+V +VRG
Sbjct: 15 MKLTSKGRYAVTAMLDVAIHSTSGPVPLADISERQGISLSYLEQLFAKLRRNGLVSSVRG 74
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I++ VV+A +ES C K +C C S+
Sbjct: 75 PGGGYRLGADAVDISVGMVVRAVDESVDATRC--QGKGNCQNGTRCLTHSLWGDLSKQIS 132
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 133 DFLNGISLAGLMSKRD 148
>gi|88706198|ref|ZP_01103905.1| rrf2 family protein [Congregibacter litoralis KT71]
gi|88699592|gb|EAQ96704.1| rrf2 family protein [Congregibacter litoralis KT71]
Length = 160
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ P R++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQDLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A+ I++ DV+ A E C DC +C + +
Sbjct: 61 PGGGYRLKRGAEDISVADVISAVNEDTDATRCRGKG--DCQDGDTCLTHHLWMDLSDRIK 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSDISLADLVARRE 134
>gi|331002201|ref|ZP_08325720.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411295|gb|EGG90711.1| hypothetical protein HMPREF0491_00582 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 154
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R Y +++++ AI+++ P +I+Q++++ ISE +L +I+ L KA +V+++RG
Sbjct: 1 MKISTRGRYALKMMVEFAINSNSPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L +P ++ T+ ++++ TE S +C C C ++ +K +A +
Sbjct: 61 QGGYLLVKPVEEYTVGEILRLTEGSLSPVDCL-DGNGSCVHSDFCVTQNLFKKVEDAINN 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
V+ S++ LV + I+K
Sbjct: 120 VVDNISLQDLVDDELDIRK 138
>gi|119469041|ref|ZP_01612025.1| transcriptional repressor of the iscRSUA operon, involved in
assembly of Fe-S clusters [Alteromonadales bacterium
TW-7]
gi|119447293|gb|EAW28561.1| transcriptional repressor of the iscRSUA operon, involved in
assembly of Fe-S clusters [Alteromonadales bacterium
TW-7]
Length = 163
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I++ D++ A +ES C C C ++
Sbjct: 61 PGGGYLLGREAGVISVGDIITAVDESVDATRC-QGANTGCQSGMRCLTHNLWSDLSARIE 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L ++ LV +S +K+I
Sbjct: 120 EFLNSITLAELVE-KSDVKEI 139
>gi|88858497|ref|ZP_01133139.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas
tunicata D2]
gi|88820114|gb|EAR29927.1| transcriptional repressor of the iscRSUA operon [Pseudoalteromonas
tunicata D2]
Length = 162
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + L+ A+H + P +++I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTALLDVALHTNVGPVCLAEISERQEISLSYLEQLFARLRKQGLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I++ DV+ A +ES C C C S+
Sbjct: 61 PGGGYLLGKEASEISVGDVISAVDESVDATRCHGEGG--CQKGVRCLTHSLWSDLSIRIE 118
Query: 120 DVLTQYSIECLVRNRS 135
D L ++ LV R
Sbjct: 119 DFLNNITLAELVAKRD 134
>gi|302391513|ref|YP_003827333.1| BadM/Rrf2 family transcriptional regulator [Acetohalobium
arabaticum DSM 5501]
gi|302203590|gb|ADL12268.1| transcriptional regulator, BadM/Rrf2 family [Acetohalobium
arabaticum DSM 5501]
Length = 153
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 75/142 (52%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + YG+R ++ A+H D ++ IAE ISE +L +++ L KAG+V +VR
Sbjct: 1 MKLSTKGRYGVRAMVDLALHYDDQGATPLNSIAERQNISEHYLEQLIATLRKAGLVNSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNA 117
G GG L R +IT+ D+++ E +EC A + C + SC + +K N+
Sbjct: 61 GAYGGYLLARKPAEITVKDIIQELEGPIAPSECVAKESESSCENIESCITRLIWKKLRNS 120
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+VL ++E L + + K+
Sbjct: 121 INEVLNSITLEDLRQEAINAKQ 142
>gi|327481765|gb|AEA85075.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
stutzeri DSM 4166]
Length = 163
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C C +C +
Sbjct: 61 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRCQGLGG--CHSGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L+ S+ LV NR ++++
Sbjct: 119 EFLSGISLADLV-NRQDVQQV 138
>gi|226946079|ref|YP_002801152.1| Iron-sulfur cluster assembly transcription factor IscR [Azotobacter
vinelandii DJ]
gi|6137265|sp|O69219|YOR2_AZOVI RecName: Full=Putative HTH-type transcriptional regulator ORF2
gi|3046321|gb|AAC24480.1| unknown [Azotobacter vinelandii]
gi|226721006|gb|ACO80177.1| Iron-sulphur cluster assembly transcription factor IscR
[Azotobacter vinelandii DJ]
Length = 164
Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQNGPVSLADISERQGISLSYLEQLFAKLRRNSLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + +V+ A ES V C C C + +
Sbjct: 61 PGGGYQLSRSMAAIQVAEVIDAVNESVDVTRCQGD--RGCRSGEVCLTHYLWCDLSHQIH 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L+ S+ LV RS ++ +
Sbjct: 119 EFLSGISLADLVA-RSDVQDL 138
>gi|262370470|ref|ZP_06063796.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046]
gi|262314812|gb|EEY95853.1| rrf2 family protein family protein [Acinetobacter johnsonii SH046]
Length = 157
Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 71/141 (50%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V ++RG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L V++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARRADEITVLAVIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
D L + ++ LV R +++K+
Sbjct: 119 DYLAKITLADLVA-RDNVQKV 138
>gi|229828909|ref|ZP_04454978.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM
14600]
gi|229792072|gb|EEP28186.1| hypothetical protein GCWU000342_00994 [Shuttleworthia satelles DSM
14600]
Length = 144
Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A +N P I IA ISE +L +I+ L +AG V +VRG
Sbjct: 1 MKISTKGRYALRLMLDLAAYNTGEPISIKDIARRQAISEKYLEQIISVLNRAGYVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R + T+ + + TE S E K D V RK A
Sbjct: 61 AGGGYLLTRDPKEYTVGMIFRLTEGSLAPVEGLEDGKPDLADHPELVTYDVYRKIYEAVN 120
Query: 120 DVLTQYSIECLVRNRSSI 137
V+ ++ LV ++ +
Sbjct: 121 QVVDHITLADLVDHQRQL 138
>gi|226953086|ref|ZP_03823550.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
gi|294650675|ref|ZP_06728029.1| HTH-type transcriptional regulator IscR family protein
[Acinetobacter haemolyticus ATCC 19194]
gi|226836178|gb|EEH68561.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
gi|292823466|gb|EFF82315.1| HTH-type transcriptional regulator IscR family protein
[Acinetobacter haemolyticus ATCC 19194]
Length = 157
Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +IT+L++++A E+ C HK +C C + + +
Sbjct: 61 ANGGYHLARNASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQDLSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + ++ L+ +
Sbjct: 119 DYLAKITLADLIARDN 134
>gi|121604234|ref|YP_981563.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
naphthalenivorans CJ2]
gi|120593203|gb|ABM36642.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
naphthalenivorans CJ2]
Length = 168
Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 77/132 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R LMY A + + I IA+A I++ L K++ L G+VE++RGR
Sbjct: 1 MRLTTYTDYALRTLMYLAANRERLVTIQDIADAHGIAKNHLTKVVHQLGILGVVESLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R QI I VV++TE F++AECF K C + +C L VL A A+
Sbjct: 61 NGGLRLGREPGQINIGAVVRSTEPDFYMAECFDPGKSHCIMSAACSLKDVLNDATMAYLA 120
Query: 121 VLTQYSIECLVR 132
VL +++ L++
Sbjct: 121 VLDGVTLDYLMK 132
>gi|300717962|ref|YP_003742765.1| transcriptional regulator [Erwinia billingiae Eb661]
gi|299063798|emb|CAX60918.1| Transcriptional regulator [Erwinia billingiae Eb661]
Length = 165
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +D I + V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKSSDAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L S+ LV N+ ++
Sbjct: 119 DFLNNISLAELVNNQEILE 137
>gi|262372258|ref|ZP_06065537.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter junii SH205]
gi|262312283|gb|EEY93368.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter junii SH205]
Length = 157
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARIASEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRN 133
D L + ++ L+
Sbjct: 119 DYLAKITLADLIAR 132
>gi|241765268|ref|ZP_04763249.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
gi|241365059|gb|EER59951.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
Length = 162
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 61/138 (44%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDY +RVLMYCA P IS++AE+ IS L KI+Q L G++ET R
Sbjct: 1 MRLTQWTDYTLRVLMYCAASEGRVQPVTISEVAESYGISRSHLTKIVQELSAQGLLETTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL +PA I I VV+ATE F + ECF + C L C L VL +A+ AF
Sbjct: 61 GRGGGMRLMKPAGDINIGAVVRATETDFNLVECFDAEHNQCRLSAHCYLKGVLGQAMQAF 120
Query: 119 FDVLTQYSIECLVRNRSS 136
VL + ++ L+ S
Sbjct: 121 IAVLDKVTLADLLTQPYS 138
>gi|303245724|ref|ZP_07332007.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
gi|302492987|gb|EFL52852.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
Length = 147
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+++ A+H D P RI +A +S +L K+++ L +AG V + RG
Sbjct: 1 MKLTTRSRYGTRMILDMALHAVDGPVRIKDVAARQGVSIKYLEKLVRELKQAGFVRSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
RGG L +P +IT+ +V+A E + EC CP + C V +A A
Sbjct: 61 PRGGHELAKPLSEITVGAIVRALEGDISLVECDGEGSGQSCPRLADCLTREVWAEAARAM 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+ L ++ LV +
Sbjct: 121 HERLDAITLADLVAKADA 138
>gi|260431455|ref|ZP_05785426.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
ITI-1157]
gi|260415283|gb|EEX08542.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
ITI-1157]
Length = 148
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 59/143 (41%), Positives = 80/143 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA H D S+IAE C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCAAHPDRLVTKSEIAEVCNISENHLAQVINQLSQLGYLSTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPADQI I V + E +AECFA CPL +C L L+ A FF
Sbjct: 61 NGGMELGRPADQIRIGSVFRHVEGDLPIAECFADADNTCPLTDACRLRLALQDAAEVFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L + +++ LV + + KI
Sbjct: 121 SLDEITLDALVCDNDPLLKILQP 143
>gi|163736848|ref|ZP_02144266.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
gallaeciensis BS107]
gi|161389452|gb|EDQ13803.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
gallaeciensis BS107]
Length = 154
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 81/143 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA H D S+IA C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCAAHADRLVTKSEIAARCNISENHLAQVINQLAQLGYLHTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L +PA +I I DV + E + + ECFA CPLV +C L L +A AF+
Sbjct: 61 NGGMSLGKPAAEIGIGDVFRDVEGTVPMVECFADADNTCPLVSACRLRLALSEAAQAFYQ 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L ++E L+ + ++ +F
Sbjct: 121 SLDGITLEALICDNDALFALFQP 143
>gi|238921054|ref|YP_002934569.1| iron-sulfur cluster assembly transcription factor IscR,
[Edwardsiella ictaluri 93-146]
gi|259493874|sp|C5BEU6|ISCR_EDWI9 RecName: Full=HTH-type transcriptional regulator iscR
gi|238870623|gb|ACR70334.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Edwardsiella ictaluri 93-146]
Length = 165
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +I I V+ A +ES C K C C ++ R
Sbjct: 61 PGGGYLLGKETSEIAIGAVITAVDESVDATRC--QGKEGCQGGTRCLTHTLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L S+ LV N+ +
Sbjct: 119 GFLNNISLAELVNNQEVM 136
>gi|160879964|ref|YP_001558932.1| BadM/Rrf2 family transcriptional regulator [Clostridium
phytofermentans ISDg]
gi|160428630|gb|ABX42193.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
phytofermentans ISDg]
Length = 143
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y IRVL+ A HN + IA ISE +L I+ L K ++ ++RG
Sbjct: 1 MKISTKGRYAIRVLIDLAEHNNGEFITLMDIAGRQEISEKYLEAIVSILSKNDLLISLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + +Q T+ +++ TE S C +C C + +
Sbjct: 61 KGGGYKLAKAPEQYTVGSILRLTEGSLAPVSCLEKTPNNCTRATECRTLHMWEEFYKLTN 120
Query: 120 DVLTQYSIECLVRNRSS 136
D +I LV+ S
Sbjct: 121 DYFDGITIADLVKKNDS 137
>gi|229541297|ref|ZP_04430357.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
36D1]
gi|229325717|gb|EEN91392.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
36D1]
Length = 144
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +DY +R L+Y A + I +IA+A IS+ L KI L + G+V+TVRG
Sbjct: 1 MRLTHYSDYALRELIYLASLEEGKLASIKEIADAYNISKNHLMKITYELSQLGLVKTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L + +I + +++ TE+ F + EC C + CGL VL +AL A+
Sbjct: 61 RGGGICLNKHPREINVGKLIRITEDDFKLVECMEDGASACIISPVCGLKHVLNEALVAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++E LV++ S +++
Sbjct: 121 RVLDKYTLEDLVKDPLSYRQLL 142
>gi|312143964|ref|YP_003995410.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
'sapolanicus']
gi|311904615|gb|ADQ15056.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
'sapolanicus']
Length = 150
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A H + I +I+E ISE +L ++ L KA +V++VRG
Sbjct: 1 MKISTKGRYGLRALVDLAEHEEGKAIPIRKISERQDISEQYLEQLFATLRKAKLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + I++ +++ A E +C C V C + + + +A
Sbjct: 61 AHGGYMLNHEPEDISVAEILTALEGPLVPVDCVVEENF-CNYVDRCVMHGLWEEMADAIN 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+++ ++ L+ + KK
Sbjct: 120 EIIENTTLADLLERAIAEKK 139
>gi|119774429|ref|YP_927169.1| Rrf2 family protein [Shewanella amazonensis SB2B]
gi|119766929|gb|ABL99499.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis
SB2B]
Length = 153
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSAQGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL AD I++ VV A +ES C +C C S+
Sbjct: 61 PGGGYRLGLEADDISVGMVVHAVDESVDATRC--QGAGNCQSGSRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L++ R
Sbjct: 119 DFLNGISLAALMQKRD 134
>gi|120555981|ref|YP_960332.1| BadM/Rrf2 family transcriptional regulator [Marinobacter aquaeolei
VT8]
gi|120325830|gb|ABM20145.1| transcriptional regulator, BadM/Rrf2 family [Marinobacter aquaeolei
VT8]
Length = 145
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 87/143 (60%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL+Y A D I +IA++ IS+ L K++ L K G +ET+RG+
Sbjct: 1 MHITRYTDYSLRVLIYLAAEGDRLATIQEIADSYDISKNHLMKVVHQLNKKGYIETIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG+RL I I +V+ TE+ + ECF+S K C + CGL S+ +AL AF +
Sbjct: 61 KGGMRLHMAPQDINIGILVRETEQDLSIVECFSS-KNACKITPVCGLKSMFGEALKAFLE 119
Query: 121 VLTQYSIECLVRN--RSSIKKIF 141
VL +Y++ ++++ R + ++
Sbjct: 120 VLDRYTLADVIQDHHRPQLLRLL 142
>gi|39997666|ref|NP_953617.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
gi|39984558|gb|AAR35944.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
gi|307635053|gb|ADI85329.2| transcriptional regulator, IscR family [Geobacter sulfurreducens
KN400]
Length = 145
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R Y +R ++ ++H++ P + IA+ I +L ++ L + IVE+VRG
Sbjct: 1 MRLSTRAQYAVRAMVDLSLHSEGKPVALRDIAQREDIPLNYLEQLFNRLRRGSIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R + I + ++V EE C K C +C SV
Sbjct: 61 PGGGYLLARESSAILVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHSVWEMLGERIR 120
Query: 120 DVLTQYSIECLVRNRS 135
L ++E LVR+
Sbjct: 121 TFLDSITLEDLVRDAR 136
>gi|156973367|ref|YP_001444274.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116]
gi|189044753|sp|A7MU47|ISCR_VIBHB RecName: Full=HTH-type transcriptional regulator iscR
gi|156524961|gb|ABU70047.1| hypothetical protein VIBHAR_01054 [Vibrio harveyi ATCC BAA-1116]
Length = 168
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C K DC C ++ R +
Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+++ ++
Sbjct: 119 DFLNNITLGELMKDNEVLE 137
>gi|327394815|dbj|BAK12237.1| Rrf2 family protein YfhP [Pantoea ananatis AJ13355]
Length = 165
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A+ I + +V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKEANAIAVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L ++ LV N+ +
Sbjct: 119 EFLNNITLAELVNNQEIL 136
>gi|295093897|emb|CBK82988.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp.
ART55/1]
Length = 144
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R L+ A + P I +A ISE +L +I L G+V++ RG
Sbjct: 1 MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSVLNSGGLVKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT+ V++ TE C + + C C + R+ A
Sbjct: 61 PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCEREARCSTIGLWRRLDKAIR 120
Query: 120 DVLTQYSIECLVRNRSS 136
DV+ +I LV R
Sbjct: 121 DVVDTTTIADLVAERPE 137
>gi|268593201|ref|ZP_06127422.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
rettgeri DSM 1131]
gi|291311249|gb|EFE51702.1| iron-sulfur cluster assembly transcription factor IscR [Providencia
rettgeri DSM 1131]
Length = 165
Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQSGPVPLADISERQGISLSYLEQLFSRLRKNELVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ADQI + +V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGRDADQIFVAEVIAAVDESVDATRCQGN-KEGCQNGDRCLTHALWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S++ LV+N+ +
Sbjct: 120 SFLSSISLDELVKNQEVM 137
>gi|225375164|ref|ZP_03752385.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM
16841]
gi|225212990|gb|EEG95344.1| hypothetical protein ROSEINA2194_00788 [Roseburia inulinivorans DSM
16841]
Length = 163
Score = 130 bits (328), Expect = 6e-29, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A++N P + IA IS+ +L +I+ L KA V+++RG
Sbjct: 21 MKVSTKGRYALRLMLDLAVNNTGEPISLKDIARRQGISDKYLEQIISVLNKAKYVKSIRG 80
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + ++ TI +++ TE S C C + C V +K A
Sbjct: 81 AQGGYILTKKPEEYTIGMILRLTEGSLAPVACVEEE-NTCEKIHDCATILVWQKMNEAIN 139
Query: 120 DVLTQYSIECLVR 132
DV+ +++ LV
Sbjct: 140 DVVDHMTLQDLVD 152
>gi|207725261|ref|YP_002255657.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
gi|206590495|emb|CAQ37457.1| protein of unknown function upf0074 [Ralstonia solanacearum MolK2]
Length = 193
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L R AD +T+ D++ A +E +C G C +
Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHSGRCMTHDLWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 VEYLDSVSLQDLVDQQRERQ 140
>gi|17989052|ref|NP_541685.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
1 str. 16M]
gi|148557978|ref|YP_001257553.1| iron-responsive transcriptional regulator [Brucella ovis ATCC
25840]
gi|225686349|ref|YP_002734321.1| iron-responsive transcriptional regulator [Brucella melitensis ATCC
23457]
gi|254699801|ref|ZP_05161629.1| iron-responsive transcriptional regulator [Brucella suis bv. 5 str.
513]
gi|254705944|ref|ZP_05167772.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
M163/99/10]
gi|254711169|ref|ZP_05172980.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
B2/94]
gi|254720448|ref|ZP_05182259.1| iron-responsive transcriptional regulator [Brucella sp. 83/13]
gi|256029550|ref|ZP_05443164.1| iron-responsive transcriptional regulator [Brucella pinnipedialis
M292/94/1]
gi|256043455|ref|ZP_05446384.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
1 str. Rev.1]
gi|256059242|ref|ZP_05449448.1| iron-responsive transcriptional regulator [Brucella neotomae 5K33]
gi|256111523|ref|ZP_05452537.1| iron-responsive transcriptional regulator [Brucella melitensis bv.
3 str. Ether]
gi|256157745|ref|ZP_05455663.1| iron-responsive transcriptional regulator [Brucella ceti M490/95/1]
gi|256253285|ref|ZP_05458821.1| iron-responsive transcriptional regulator [Brucella ceti B1/94]
gi|256262513|ref|ZP_05465045.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9]
gi|260167360|ref|ZP_05754171.1| iron-responsive transcriptional regulator [Brucella sp. F5/99]
gi|260564653|ref|ZP_05835138.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M]
gi|261220398|ref|ZP_05934679.1| transcriptional regulator [Brucella ceti B1/94]
gi|261313373|ref|ZP_05952570.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
gi|261318761|ref|ZP_05957958.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|261323195|ref|ZP_05962392.1| transcriptional regulator [Brucella neotomae 5K33]
gi|261750271|ref|ZP_05993980.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
gi|261756768|ref|ZP_06000477.1| RrF2 family protein [Brucella sp. F5/99]
gi|265985470|ref|ZP_06098205.1| transcriptional regulator [Brucella sp. 83/13]
gi|265986559|ref|ZP_06099116.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|265989875|ref|ZP_06102432.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
gi|265993019|ref|ZP_06105576.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|265996251|ref|ZP_06108808.1| transcriptional regulator [Brucella ceti M490/95/1]
gi|294853640|ref|ZP_06794312.1| rirA [Brucella sp. NVSL 07-0026]
gi|306839690|ref|ZP_07472493.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
2653]
gi|306841790|ref|ZP_07474476.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
gi|306845894|ref|ZP_07478462.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
gi|17984895|gb|AAL53949.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M]
gi|148369263|gb|ABQ62135.1| RrF2 family protein [Brucella ovis ATCC 25840]
gi|225642454|gb|ACO02367.1| Transcriptional regulator, Rrf2 family protein [Brucella melitensis
ATCC 23457]
gi|260152296|gb|EEW87389.1| RrF2 family protein [Brucella melitensis bv. 1 str. 16M]
gi|260918982|gb|EEX85635.1| transcriptional regulator [Brucella ceti B1/94]
gi|261297984|gb|EEY01481.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|261299175|gb|EEY02672.1| transcriptional regulator [Brucella neotomae 5K33]
gi|261302399|gb|EEY05896.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
gi|261736752|gb|EEY24748.1| RrF2 family protein [Brucella sp. F5/99]
gi|261740024|gb|EEY27950.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
gi|262550548|gb|EEZ06709.1| transcriptional regulator [Brucella ceti M490/95/1]
gi|262763889|gb|EEZ09921.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|263000544|gb|EEZ13234.1| transcriptional regulator [Brucella melitensis bv. 1 str. Rev.1]
gi|263092248|gb|EEZ16545.1| RrF2 family protein [Brucella melitensis bv. 2 str. 63/9]
gi|264658756|gb|EEZ29017.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|264664062|gb|EEZ34323.1| transcriptional regulator [Brucella sp. 83/13]
gi|294819295|gb|EFG36295.1| rirA [Brucella sp. NVSL 07-0026]
gi|306273786|gb|EFM55624.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
gi|306288195|gb|EFM59582.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
gi|306405270|gb|EFM61546.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
2653]
gi|326410717|gb|ADZ67781.1| iron-responsive transcriptional regulator [Brucella melitensis M28]
gi|326554010|gb|ADZ88649.1| iron-responsive transcriptional regulator [Brucella melitensis
M5-90]
Length = 153
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142
>gi|170726128|ref|YP_001760154.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC
51908]
gi|169811475|gb|ACA86059.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC
51908]
Length = 153
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAMHSTAGPVPLADISERQGISLSYLEQLFAKLRKQGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A +I++ VV+A +ES C +C C S+
Sbjct: 61 PGGGYRLGADAGEISVGMVVRAVDESVDATRCQGQG--NCQSGTRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+ R
Sbjct: 119 DFLNGISLAGLMTKRD 134
>gi|91784249|ref|YP_559455.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91688203|gb|ABE31403.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
xenovorans LB400]
Length = 176
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGSCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|325122066|gb|ADY81589.1| hypothetical protein BDGL_001003 [Acinetobacter calcoaceticus
PHEA-2]
Length = 157
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + S+ L+ +
Sbjct: 119 DYLAKISLADLISRDN 134
>gi|118444398|ref|YP_878357.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
novyi NT]
gi|118134854|gb|ABK61898.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
novyi NT]
Length = 144
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 70/139 (50%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ AI+ + P I IA+ ISEL+L ++ PL KA +++++RG
Sbjct: 1 MKLSTKGRYGVRAMVDLAINYGESPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I++ D++ E ++ C + +C + C + +K +
Sbjct: 61 AQGGYVLNKHPKDISVSDIINVLEGPIEISSCVDTG--ECDNMNVCPTRLLWKKIKKSID 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
V +++ + + +K
Sbjct: 119 KVTESVTLQDMANDYKRLK 137
>gi|146283373|ref|YP_001173526.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
stutzeri A1501]
gi|145571578|gb|ABP80684.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
stutzeri A1501]
Length = 183
Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 61/141 (43%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 21 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRGSLVTSVRG 80
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES C C +C +
Sbjct: 81 PGGGYQLSRDMAGIQVAQVIDAVNESVDATRCQGLGG--CHSGDTCLTHHLWCDLSQQIH 138
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L+ S+ LV NR ++++
Sbjct: 139 EFLSGISLADLV-NRQDVQQV 158
>gi|153855264|ref|ZP_01996430.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814]
gi|149752263|gb|EDM62194.1| hypothetical protein DORLON_02444 [Dorea longicatena DSM 13814]
Length = 154
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A +++ P I +A ISE +L +++ L KAG+V+++RG
Sbjct: 1 MKLSTKGRYGLRAMIDLARYSEKEPVSIGSVAARQEISERYLEQLVALLKKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALN 116
GG L + +I++ D+++A E S +C A + C C V +K +
Sbjct: 61 ASGGYVLAKKPSEISVGDILRALEGSLEPVKCAAFDTTTGEGCMASDGCVTKYVWQKIND 120
Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
+ D + Q ++ L++ SI
Sbjct: 121 SINDTVNQIMLDELIQESKSIN 142
>gi|207743635|ref|YP_002260027.1| protein of unknown function upf0074 [Ralstonia solanacearum
IPO1609]
gi|206595034|emb|CAQ61961.1| protein of unknown function upf0074 [Ralstonia solanacearum
IPO1609]
Length = 193
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L R AD +T+ D++ A +E +C G C +
Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHSGRCMTHDLWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 VEYLDSVSLQDLVDQQRERQ 140
>gi|163844714|ref|YP_001622369.1| iron-responsive transcriptional regulator [Brucella suis ATCC
23445]
gi|163675437|gb|ABY39547.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC
23445]
Length = 153
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 61 DGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142
>gi|254251966|ref|ZP_04945284.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158]
gi|124894575|gb|EAY68455.1| hypothetical protein BDAG_01172 [Burkholderia dolosa AUO158]
Length = 179
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|15640766|ref|NP_230396.1| hypothetical protein VC0747 [Vibrio cholerae O1 biovar El Tor str.
N16961]
gi|121591450|ref|ZP_01678726.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121729724|ref|ZP_01682165.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|147673230|ref|YP_001216232.1| hypothetical protein VC0395_A0276 [Vibrio cholerae O395]
gi|153216250|ref|ZP_01950350.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|153800571|ref|ZP_01955157.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|153817260|ref|ZP_01969927.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|153822734|ref|ZP_01975401.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|153824617|ref|ZP_01977284.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|153829399|ref|ZP_01982066.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|227080926|ref|YP_002809477.1| hypothetical protein VCM66_0705 [Vibrio cholerae M66-2]
gi|254225012|ref|ZP_04918626.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|254285465|ref|ZP_04960429.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|254847884|ref|ZP_05237234.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255744554|ref|ZP_05418505.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101]
gi|262161312|ref|ZP_06030423.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1]
gi|262168805|ref|ZP_06036500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27]
gi|262190470|ref|ZP_06048721.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93]
gi|262402868|ref|ZP_06079429.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586]
gi|297581146|ref|ZP_06943070.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|298499120|ref|ZP_07008927.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
gi|9655192|gb|AAF93912.1| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor
str. N16961]
gi|121546701|gb|EAX56880.1| conserved hypothetical protein [Vibrio cholerae 2740-80]
gi|121628541|gb|EAX61024.1| conserved hypothetical protein [Vibrio cholerae V52]
gi|124114395|gb|EAY33215.1| conserved hypothetical protein [Vibrio cholerae 1587]
gi|124123860|gb|EAY42603.1| conserved hypothetical protein [Vibrio cholerae MZO-3]
gi|125622399|gb|EAZ50719.1| conserved hypothetical protein [Vibrio cholerae V51]
gi|126512176|gb|EAZ74770.1| conserved hypothetical protein [Vibrio cholerae NCTC 8457]
gi|126519765|gb|EAZ76988.1| conserved hypothetical protein [Vibrio cholerae B33]
gi|146315113|gb|ABQ19652.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|148875119|gb|EDL73254.1| conserved hypothetical protein [Vibrio cholerae 623-39]
gi|149741835|gb|EDM55864.1| conserved hypothetical protein [Vibrio cholerae MZO-2]
gi|150424327|gb|EDN16264.1| conserved hypothetical protein [Vibrio cholerae AM-19226]
gi|227008814|gb|ACP05026.1| conserved hypothetical protein [Vibrio cholerae M66-2]
gi|227012571|gb|ACP08781.1| conserved hypothetical protein [Vibrio cholerae O395]
gi|254843589|gb|EET22003.1| conserved hypothetical protein [Vibrio cholerae MO10]
gi|255737585|gb|EET92979.1| iron-sulfur cluster regulator IscR [Vibrio cholera CIRS 101]
gi|262022923|gb|EEY41629.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC27]
gi|262029062|gb|EEY47715.1| iron-sulfur cluster regulator IscR [Vibrio cholerae INDRE 91/1]
gi|262033642|gb|EEY52131.1| iron-sulfur cluster regulator IscR [Vibrio cholerae CT 5369-93]
gi|262351650|gb|EEZ00783.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC586]
gi|297534462|gb|EFH73299.1| conserved hypothetical protein [Vibrio cholerae RC385]
gi|297543453|gb|EFH79503.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
Length = 188
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 16 MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + I+I V+ A +ES +C + K DC C ++ R +
Sbjct: 76 PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRIT 133
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 134 DFLNNITLGELMMDNEVLE 152
>gi|78066902|ref|YP_369671.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
gi|115352215|ref|YP_774054.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|172061082|ref|YP_001808734.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|77967647|gb|ABB09027.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
gi|115282203|gb|ABI87720.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
AMMD]
gi|171993599|gb|ACB64518.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MC40-6]
gi|325523676|gb|EGD01947.1| putative transcriptional regulator protein [Burkholderia sp. TJI49]
Length = 179
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|56695347|ref|YP_165695.1| rrf2 family protein [Ruegeria pomeroyi DSS-3]
gi|56677084|gb|AAV93750.1| rrf2 family protein [Ruegeria pomeroyi DSS-3]
Length = 148
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 80/143 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LM+CA H S+IAE C +SE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMFCAAHPGRLVTKSEIAEVCNVSENHLAQVINQLSQLGFLTTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L AD I I +V + E + + ECFA CPL +C L LR A AF+
Sbjct: 61 NGGMCLGMAADAIRIGEVFRHVEGNLPMVECFADADNSCPLTDACRLRLALRDAAQAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L + +++ LV + + + KI N
Sbjct: 121 SLDEITLDALVCDNTDLLKILNP 143
>gi|332532350|ref|ZP_08408230.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis
ANT/505]
gi|332038217|gb|EGI74663.1| iron-sulfur cluster regulator IscR [Pseudoalteromonas haloplanktis
ANT/505]
Length = 163
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I++ IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHTGVGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I++ D++ A +ES C C C ++
Sbjct: 61 PGGGYLLGREAGVISVGDIISAVDESVDATRC-QGADTGCQSGMRCLTHNLWSDLSARIE 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L ++ LV +S +K+I
Sbjct: 120 EFLNNITLAELVE-KSDVKEI 139
>gi|167768072|ref|ZP_02440125.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1]
gi|317499363|ref|ZP_07957631.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
gi|167710401|gb|EDS20980.1| hypothetical protein CLOSS21_02617 [Clostridium sp. SS2/1]
gi|291561069|emb|CBL39869.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
bacterium SSC/2]
gi|316893332|gb|EFV15546.1| transcriptional regulator [Lachnospiraceae bacterium 5_1_63FAA]
Length = 145
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R++ A+H+ + I+ IS +L +I++ L G ++++RG
Sbjct: 1 MKISTKGRYAVRLMYDLAMHHTGDWIALKDISRRQEISVKYLEQIVRQLSIRGYLKSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R TI +++K TE S C C C +
Sbjct: 61 PKGGYQLSRDPKDYTIYEILKITEGSLQPVACLDDKVNQCERYHECPTIEIWEGLGQVIE 120
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ ++E +V
Sbjct: 121 EYLSGITLEDVVNKAR 136
>gi|37678938|ref|NP_933547.1| transcriptional regulator [Vibrio vulnificus YJ016]
gi|326423712|ref|NP_759435.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio
vulnificus CMCP6]
gi|37197680|dbj|BAC93518.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
gi|319999071|gb|AAO08962.2| iron-sulfur cluster assembly transcription factor IscR [Vibrio
vulnificus CMCP6]
Length = 183
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 16 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 75
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I+I V+ A +ES +C K DC C ++ R +
Sbjct: 76 PGGGYRLGADAFTISIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIT 133
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + I+
Sbjct: 134 DFLNNITLGELMSDNEVIE 152
>gi|260459730|ref|ZP_05807984.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
gi|259034532|gb|EEW35789.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
Length = 153
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R+LMYCA +ND +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAMRILMYCAANNDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF
Sbjct: 61 NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y+I +V R +++ +
Sbjct: 121 VLERYTIADMVAARPNVRSLLG 142
>gi|110834734|ref|YP_693593.1| rrf2 family protein [Alcanivorax borkumensis SK2]
gi|110647845|emb|CAL17321.1| rrf2 family protein [Alcanivorax borkumensis SK2]
Length = 154
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAATGPVSLADISERQGISISYLEQLFAKLRRNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + QI + V+ A +ES C DC C +
Sbjct: 61 PGGGYQLSRNSGQIDVAAVIAAVDESVDATRC--GGHGDCQEGDICLTHHLWCDLSGQIQ 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
D L+ ++ LV R ++++
Sbjct: 119 DFLSGITLGELVA-RQEVRQV 138
>gi|62317580|ref|YP_223433.1| iron-responsive transcriptional regulator [Brucella abortus bv. 1
str. 9-941]
gi|83269562|ref|YP_418853.1| iron-responsive transcriptional regulator [Brucella melitensis
biovar Abortus 2308]
gi|189022834|ref|YP_001932575.1| iron-responsive transcriptional regulator [Brucella abortus S19]
gi|254691079|ref|ZP_05154333.1| iron-responsive transcriptional regulator [Brucella abortus bv. 6
str. 870]
gi|254695615|ref|ZP_05157443.1| iron-responsive transcriptional regulator [Brucella abortus bv. 3
str. Tulya]
gi|254698864|ref|ZP_05160692.1| iron-responsive transcriptional regulator [Brucella abortus bv. 2
str. 86/8/59]
gi|254732311|ref|ZP_05190889.1| iron-responsive transcriptional regulator [Brucella abortus bv. 4
str. 292]
gi|256256264|ref|ZP_05461800.1| iron-responsive transcriptional regulator [Brucella abortus bv. 9
str. C68]
gi|260544818|ref|ZP_05820639.1| RrF2 family protein [Brucella abortus NCTC 8038]
gi|260756675|ref|ZP_05869023.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|260760106|ref|ZP_05872454.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|260763344|ref|ZP_05875676.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
gi|260882492|ref|ZP_05894106.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
gi|261216014|ref|ZP_05930295.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
gi|297249620|ref|ZP_06933321.1| rirA, iron-responsive transcriptional regulator [Brucella abortus
bv. 5 str. B3196]
gi|62197773|gb|AAX76072.1| RrF2 family protein [Brucella abortus bv. 1 str. 9-941]
gi|82939836|emb|CAJ12844.1| Protein of unknown function UPF0074 [Brucella melitensis biovar
Abortus 2308]
gi|189021408|gb|ACD74129.1| RrF2 family protein [Brucella abortus S19]
gi|260098089|gb|EEW81963.1| RrF2 family protein [Brucella abortus NCTC 8038]
gi|260670424|gb|EEX57364.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|260673765|gb|EEX60586.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
gi|260676783|gb|EEX63604.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|260872020|gb|EEX79089.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
gi|260917621|gb|EEX84482.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
gi|297173489|gb|EFH32853.1| rirA, iron-responsive transcriptional regulator [Brucella abortus
bv. 5 str. B3196]
Length = 153
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142
>gi|227498969|ref|ZP_03929106.1| transcriptional regulator [Acidaminococcus sp. D21]
gi|226904418|gb|EEH90336.1| transcriptional regulator [Acidaminococcus sp. D21]
Length = 141
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A++ I ++E ISE +L +I+ L +A +V++ RG
Sbjct: 1 MKISTKGRYALRLMLDLAMNGKENFVPIRSVSERQEISEKYLEQIITALSRAKLVKSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + ++ T ++++A E S C C C ++ ++ A
Sbjct: 61 AQGGYKLVKAPEEYTTGEILRAVEGSLAPVACLEPGHTVCARAKKCITLNLYKEIQEAVD 120
Query: 120 DVLTQYSIECLVRNRSS 136
V+ + ++ LV + +
Sbjct: 121 SVVDRTTLADLVAQQEA 137
>gi|116690148|ref|YP_835771.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia HI2424]
gi|161524318|ref|YP_001579330.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|170701998|ref|ZP_02892918.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
gi|170733480|ref|YP_001765427.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia MC0-3]
gi|189350926|ref|YP_001946554.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|221198432|ref|ZP_03571478.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia multivorans CGD2M]
gi|221208891|ref|ZP_03581888.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia multivorans CGD2]
gi|221214778|ref|ZP_03587747.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia multivorans CGD1]
gi|254247783|ref|ZP_04941104.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184]
gi|116648237|gb|ABK08878.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia HI2424]
gi|124872559|gb|EAY64275.1| hypothetical protein BCPG_02591 [Burkholderia cenocepacia PC184]
gi|160341747|gb|ABX14833.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans ATCC 17616]
gi|169816722|gb|ACA91305.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia MC0-3]
gi|170133088|gb|EDT01496.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
gi|189334948|dbj|BAG44018.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|221165317|gb|EED97794.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia multivorans CGD1]
gi|221171174|gb|EEE03624.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia multivorans CGD2]
gi|221182364|gb|EEE14765.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia multivorans CGD2M]
Length = 179
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|296158336|ref|ZP_06841167.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
Ch1-1]
gi|295891280|gb|EFG71067.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
Ch1-1]
Length = 176
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGSCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|167837169|ref|ZP_02464052.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia thailandensis MSMB43]
Length = 180
Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCEGSKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|299770352|ref|YP_003732378.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter sp. DR1]
gi|298700440|gb|ADI91005.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter sp. DR1]
Length = 157
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + S+ L+ +
Sbjct: 119 DYLAKISLADLISRDN 134
>gi|183599755|ref|ZP_02961248.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827]
gi|188022016|gb|EDU60056.1| hypothetical protein PROSTU_03260 [Providencia stuartii ATCC 25827]
Length = 165
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFARLRKNELVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ADQI + V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGRDADQIFVAQVIAAVDESVDATRCQGN-KEGCQNGDRCLTHALWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S++ LV+N+ I
Sbjct: 120 SFLSSISLDELVKNQEVI 137
>gi|114563595|ref|YP_751108.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella
frigidimarina NCIMB 400]
gi|114334888|gb|ABI72270.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
frigidimarina NCIMB 400]
Length = 153
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSATGPVPLADISERQGISLSYLEQLFAKLRKHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I++ VV A +ES C K +C C S+
Sbjct: 61 PGGGYRLGLEAVDISVGMVVHAVDESVDATRC--QGKGNCQSGTRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L++ R
Sbjct: 119 DFLDGISLAGLMQKRD 134
>gi|269103288|ref|ZP_06155985.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268163186|gb|EEZ41682.1| iron-sulfur cluster regulator IscR [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 173
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQDGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A++I + V+ A +ES +C K DC C ++ R +
Sbjct: 61 PGGGYRLGDDANKIAVGMVIAAVDESVDATKC--QGKGDCQGGARCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+ +
Sbjct: 119 GFLNNITLGELMEDND 134
>gi|312796716|ref|YP_004029638.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454]
gi|312168491|emb|CBW75494.1| Rrf2 family protein [Burkholderia rhizoxinica HKI 454]
Length = 180
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 5 MRLTTKGRFAVTAMIDLALRQEKGPVTLAAISQRQQISLSYLEQLFGKLRRHEIVESVRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
GG L R AD++T+ D++ A +E +C + G C +
Sbjct: 65 PGGGYNLARRADEVTVADIIIAVDEPLDATQCGGKGTCEGTKQPGGHCMTHELWSTLNQK 124
Query: 118 FFDVLTQYSIECLVRNRS 135
+ L S++ LV +
Sbjct: 125 MVEYLDSVSLQDLVDQQR 142
>gi|307824416|ref|ZP_07654641.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
tundripaludum SV96]
gi|307734400|gb|EFO05252.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
tundripaludum SV96]
Length = 157
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A H+ P ++ IA IS +L ++ L +AG+V+ VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLAFHSQIKPVTLTDIAARQTISLSYLEQLFARLRRAGMVKGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +LCR I I D++ A E +C +C +C +
Sbjct: 61 PGGGYKLCRKTSDINIADIIAAVNEPLDSTKCGGE--ANCQKDQACLTHDLWMGLSEQIR 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L+
Sbjct: 119 DYLKGISLADLLEKNQ 134
>gi|170692319|ref|ZP_02883482.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
C4D1M]
gi|170142749|gb|EDT10914.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
C4D1M]
Length = 169
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 79/145 (54%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y AI + + I I++A +S+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVLLYLAIRGEGLSTIQDISDAYGVSKNHLMKVVQQLSELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNA 117
GG+RL ++T+ ++V+ATE F + C C + C L +VL A NA
Sbjct: 61 NGGLRLAERTRKLTVGEIVRATESDFALVACLPDQNGERRPCVITPQCRLRNVLEAARNA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
F L +++I+ + + + +
Sbjct: 121 FLAELDRHTIDEVAGPQGPLAALLG 145
>gi|32034036|ref|ZP_00134280.1| COG1959: Predicted transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|126208408|ref|YP_001053633.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae L20]
gi|165976351|ref|YP_001651944.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|190150259|ref|YP_001968784.1| HTH-type transcriptional regulator [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303251397|ref|ZP_07337574.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|303252975|ref|ZP_07339130.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|307245844|ref|ZP_07527929.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|307247920|ref|ZP_07529954.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|307250175|ref|ZP_07532134.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|307252558|ref|ZP_07534453.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|307254817|ref|ZP_07536643.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|307259259|ref|ZP_07540988.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|307263598|ref|ZP_07545212.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|126097200|gb|ABN74028.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 5b str. L20]
gi|165876452|gb|ABY69500.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 3 str. JL03]
gi|189915390|gb|ACE61642.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 7 str. AP76]
gi|302648166|gb|EFL78367.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 2 str. 4226]
gi|302649751|gb|EFL79930.1| putative HTH-type transcriptional regulator [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306853204|gb|EFM85424.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 1 str. 4074]
gi|306855570|gb|EFM87739.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 2 str. S1536]
gi|306857806|gb|EFM89903.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 4 str. M62]
gi|306859963|gb|EFM91981.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 6 str. Femo]
gi|306862188|gb|EFM94156.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 9 str. CVJ13261]
gi|306866626|gb|EFM98485.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306871061|gb|EFN02791.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 150
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV +VRG
Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + ++I++ ++ A E+ V +C S +C C + +
Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEEQIG 118
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ LV S
Sbjct: 119 VFLNTITLAELVEEHSD 135
>gi|307729564|ref|YP_003906788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
CCGE1003]
gi|307584099|gb|ADN57497.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1003]
Length = 169
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + I I+EA +S+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGQGLSTIQDISEAYGVSKNHLMKVVQQLSELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL +T+ ++V+ATE F + C + C + C L +VL A +A
Sbjct: 61 NGGLRLAERTRSLTVGEIVRATESDFALVACLPDQNGERRACVITPQCRLRNVLEAARHA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
F L +++I+ + + + +
Sbjct: 121 FLAELDRHTIDEVAGPQGPLAALLG 145
>gi|206560561|ref|YP_002231326.1| putative transcriptional regulator protein [Burkholderia
cenocepacia J2315]
gi|198036603|emb|CAR52500.1| putative transcriptional regulator protein [Burkholderia
cenocepacia J2315]
Length = 179
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|56477058|ref|YP_158647.1| transcriptional regulator [Aromatoleum aromaticum EbN1]
gi|56313101|emb|CAI07746.1| predicted transcriptional regulator [Aromatoleum aromaticum EbN1]
Length = 153
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 57/138 (41%), Positives = 80/138 (57%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L++ +H + I QIA+ IS+ L KI+ L G+VET RGR
Sbjct: 1 MKLTDYTDYTLRTLIFLGLHRNEQVTIQQIADGYDISKNHLMKIIHRLSLDGLVETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +P D+I I VV+A E+ F + ECF+ C L C L + R AL AFF
Sbjct: 61 SGGVRLRKPPDEINIGQVVRAAEQEFALVECFSRVNNRCVLSPVCELQATFRDALEAFFA 120
Query: 121 VLTQYSIECLVRNRSSIK 138
VL + ++ ++RN ++
Sbjct: 121 VLDKRTLADILRNAEEVR 138
>gi|187924557|ref|YP_001896199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Burkholderia phytofirmans PsJN]
gi|187715751|gb|ACD16975.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
phytofirmans PsJN]
Length = 176
Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGSCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|251792922|ref|YP_003007648.1| iron-sulfur cluster assembly transcription factor IscR
[Aggregatibacter aphrophilus NJ8700]
gi|247534315|gb|ACS97561.1| iron-sulfur cluster assembly transcription factor IscR
[Aggregatibacter aphrophilus NJ8700]
Length = 156
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AI+ ND P +S I+E IS +L ++ L + IV++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIAIYANDGPVSLSDISERQHISLSYLEQLFAKLRRNNIVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L ++I+I V+ A E+ +C +C C ++ K
Sbjct: 61 PGGGYKLGYTPNEISIGMVIAAVNENIETTKCLGKG--NCQNGAECLTHTLWEKLSLRIA 118
Query: 120 DVLTQYSIECLVRN 133
D L + ++ LV
Sbjct: 119 DFLNEITLAELVSQ 132
>gi|322514681|ref|ZP_08067709.1| iron-sulfur cluster assembly transcription regulator IscR
[Actinobacillus ureae ATCC 25976]
gi|322119379|gb|EFX91488.1| iron-sulfur cluster assembly transcription regulator IscR
[Actinobacillus ureae ATCC 25976]
Length = 150
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV++VRG
Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLTDISERQAISLSYLEQLFAQLRREGIVQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + ++I++ ++ A E+ V +C S +C C + + +
Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEDQIG 118
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ LV S
Sbjct: 119 VFLNTITLAELVEEHSD 135
>gi|192359869|ref|YP_001981952.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio
japonicus Ueda107]
gi|190686034|gb|ACE83712.1| iron-sulfur cluster assembly transcription factor IscR [Cellvibrio
japonicus Ueda107]
Length = 162
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+D P ++ I+ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHSDSGPVSLADISARQGISLSYLEQLFARLRQFNLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L I++ VV A ES C K +C C + +
Sbjct: 61 PGGGYQLASSTCDISVAQVVDAVSESLDATRC--EGKGNCQEGEVCLTHHLWQDLSAQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
L S+ LV
Sbjct: 119 QFLNSISLADLVARSD 134
>gi|163814282|ref|ZP_02205671.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759]
gi|158449917|gb|EDP26912.1| hypothetical protein COPEUT_00433 [Coprococcus eutactus ATCC 27759]
Length = 144
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R L+ A + P I +A ISE +L +I L G+V++ RG
Sbjct: 1 MKVSTKGRYALRFLINIASRTDGKPVSIKDVAAQEEISEKYLEQITSMLNSGGLVKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT+ V++ TE C + + C C + R+ A
Sbjct: 61 PQGGYLLRKAPEDITVGMVLRLTEGGISPVACLDADEFQCDREARCSTIGLWRRLDKAIR 120
Query: 120 DVLTQYSIECLVRNRSS 136
DV+ +I LV R
Sbjct: 121 DVVDTTTIADLVAERPE 137
>gi|113460426|ref|YP_718488.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus
129PT]
gi|112822469|gb|ABI24558.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus
129PT]
Length = 135
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +QI+I V+ A E+ V +C + DC C S+ +
Sbjct: 61 PGGGYQLGLSTEQISIGMVINAVNENINVTKCLGNG--DCQGGVKCLTHSLWEELSVRIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
+ L + +I LV ++
Sbjct: 119 NFLNEITIAELVAKQAK 135
>gi|107028693|ref|YP_625788.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia AU 1054]
gi|105897857|gb|ABF80815.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia AU 1054]
Length = 179
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|254492393|ref|ZP_05105565.1| Transcriptional regulator superfamily [Methylophaga thiooxidans
DMS010]
gi|224462285|gb|EEF78562.1| Transcriptional regulator superfamily [Methylophaga thiooxydans
DMS010]
Length = 143
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +DY +R+L+Y AIH D P + AE +S L K+ Q LV+ +V + RG
Sbjct: 1 MQLTTHSDYALRLLIYLAIHPGDKPATVKDAAERYGVSTNHLAKVAQRLVQEKLVISQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG++L + I I +++ T E+ + ECF CP+ C L S LRKA AFF
Sbjct: 61 RGGGLKLATTPESINIGQLIRKT-ENLELLECFGDDCA-CPIESVCILFSALRKAQKAFF 118
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
DVL Y++ +V+N+ + + N
Sbjct: 119 DVLDGYTLADVVKNKHRLMQSLN 141
>gi|270265005|ref|ZP_06193268.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270040939|gb|EFA14040.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 141
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I + DVV+A E + C + C + +C L VL + + F
Sbjct: 61 KNGGIRLGKPAETIRLGDVVRAL-EPLSLVNCNSDF---CHITPACRLKQVLHQGVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L +++ +V + + K+
Sbjct: 117 EELDSHTLADMVEDNPPLYKLL 138
>gi|332141977|ref|YP_004427715.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
macleodii str. 'Deep ecotype']
gi|327551999|gb|AEA98717.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
macleodii str. 'Deep ecotype']
Length = 161
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +I I +V++A +ES C + DC C S+ + +
Sbjct: 61 PGGGYLLGREASEIAIGEVIRAVDESIDATRC--QGQADCQGGDRCLTHSLWQDLSDRIA 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+ R
Sbjct: 119 AFLNSITLGELMAKRD 134
>gi|256822724|ref|YP_003146687.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM
16069]
gi|256796263|gb|ACV26919.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis
DSM 16069]
Length = 155
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A+H+ P +++++ IS +L ++ L KA +V++VRG
Sbjct: 1 MKLSTKGRYAVTAMLDLALHSGNGPITLAEVSSRQDISLSYLEQLFSKLRKASLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP+ QI+I +VV A E +C + K C C + + + +
Sbjct: 61 PGGGYELKRPSSQISIAEVVLAVNEPISATKC--NGKGGCQDGDLCLSHQLWTELSDQIY 118
Query: 120 DVLTQYSIECLVRNR 134
L+ ++E +++ +
Sbjct: 119 QFLSGITLEQVIQRQ 133
>gi|170694738|ref|ZP_02885889.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
C4D1M]
gi|170140369|gb|EDT08546.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
C4D1M]
Length = 176
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGSCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|154685398|ref|YP_001420559.1| YhdE [Bacillus amyloliquefaciens FZB42]
gi|154351249|gb|ABS73328.1| YhdE [Bacillus amyloliquefaciens FZB42]
Length = 144
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 57/144 (39%), Positives = 89/144 (61%), Gaps = 1/144 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A H+D + I +IA+ IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLASRHSDELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+
Sbjct: 61 RGGGIRLGMTPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLNEALQAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
VL +Y++ LV+N+ I ++ +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144
>gi|59711223|ref|YP_203999.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding
transcriptional repressor [Vibrio fischeri ES114]
gi|59479324|gb|AAW85111.1| Fe-S cluster synthesis regulatory protein IscR, DNA-binding
transcriptional repressor [Vibrio fischeri ES114]
Length = 168
Score = 130 bits (326), Expect = 9e-29, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+QI + V+ A +ES +C C C ++ R +
Sbjct: 61 PGGGYRLGLKAEQIAVGMVISAVDESVDATKCHGKEG--CQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+++
Sbjct: 119 TFLDGITLGELMQDNE 134
>gi|40063649|gb|AAR38438.1| rrf2 family protein [uncultured marine bacterium 582]
Length = 147
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 75/141 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+K TDY +R+LM+ A+ + + QIAE L K+ Q LV+ G V +VRGR
Sbjct: 1 MQLSKFTDYALRILMHLAVADKHMLTTRQIAEIHDAKYNHLAKVTQWLVRKGYVASVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + + + + VV+ E + +C C L SCGLTS LR A AFF
Sbjct: 61 SGGLRLAKETNDVNVGLVVRDLEGQSELVDCLRPSGGSCILAPSCGLTSALRAAQEAFFQ 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L ++ L +N + I ++
Sbjct: 121 SLDTLTLADLTKNDAPISRLL 141
>gi|307256986|ref|ZP_07538762.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|307261420|ref|ZP_07543093.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306864470|gb|EFM96377.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306868877|gb|EFN00681.1| HTH-type transcriptional regulator iscR [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 150
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ A+H P ++ I+E IS +L ++ L + G+V +VRG
Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGLVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + ++I++ ++ A E+ V +C S +C C + +
Sbjct: 61 PGGGYQLGKQPEEISVGMIIAAVNENLDVTKCKGSG--NCSKNSQCLTHHLWERLEEQIG 118
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ LV S
Sbjct: 119 VFLNTITLAELVEEHSD 135
>gi|209519995|ref|ZP_03268774.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
gi|209499592|gb|EDZ99668.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
Length = 176
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGTCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|28210751|ref|NP_781695.1| RRF2 family protein [Clostridium tetani E88]
gi|28203189|gb|AAO35632.1| RRF2 protein family [Clostridium tetani E88]
Length = 144
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 71/145 (48%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A++ D P I I+E ISE +L ++ L KA +++++RG
Sbjct: 1 MKLSTKGRYGVRAMIDLALNYGDIPISIKSISERQNISEYYLEQLFATLRKADLIKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R I+I ++++ E ++ C + +C + SC + + +
Sbjct: 61 AQGGYLLSREPKDISIAEIIETLEGPVELSNCVSQG--ECENMDSCSTRLLWVRIKESID 118
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
+V +++ +V + + G
Sbjct: 119 NVTKTTTLQDMVDDYYKLNSCKGKG 143
>gi|91775163|ref|YP_544919.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus
flagellatus KT]
gi|91709150|gb|ABE49078.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus
flagellatus KT]
Length = 156
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MRLTTKGRFAVTAMLDLALNEEEKPVTLAGISERQGISLSYLEQLFSRLRRNGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + +I++ D++ A +E +C K +C C +
Sbjct: 61 PGGGYRLTKNHHEISVSDIITAVDELIDATQC--GGKENCHEGKPCMTHDLWSSLNAKIL 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L+ ++ LV ++ K+I
Sbjct: 119 EYLSGVALSDLVASQREGKEI 139
>gi|99082112|ref|YP_614266.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
gi|99038392|gb|ABF65004.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040]
Length = 154
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 79/143 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA++ S+IA C ISE L +++ L + G ++T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCALNEGRLVTKSEIAARCNISENHLAQVVNQLSQLGFLKTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R A I I DV + E + ECFA CPLV +C L L +A AF+
Sbjct: 61 NGGLALGRAAADICIGDVFRQVEGGLPMVECFADVDNTCPLVEACRLRDALTRAGEAFYG 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L S+E L + +++I +
Sbjct: 121 ALDGISLESLTCDNIDLQRILSP 143
>gi|119371154|sp|Q9KTY3|ISCR_VIBCH RecName: Full=HTH-type transcriptional regulator iscR
Length = 173
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + I+I V+ A +ES +C + K DC C ++ R +
Sbjct: 61 PGGGYRLGMDSYAISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRIT 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 119 DFLNNITLGELMMDNEVLE 137
>gi|53803005|ref|YP_115276.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
gi|53756766|gb|AAU91057.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
Length = 162
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A H++ P ++ IA+ IS +L ++ L +AG+VE VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLAYHSETNPVTLTDIAKRQNISLSYLEQLFARLRRAGMVEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A +I I +++ A +E C K +C C +
Sbjct: 61 PGGGYQLSRCASEINIAEIIAAVDEPIDSTRC--GGKANCQNNQPCLTHDLWMGLSEQIR 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ L S+ ++ R ++++
Sbjct: 119 EYLASISLGEVLT-RQPVRQV 138
>gi|83718552|ref|YP_442404.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia thailandensis E264]
gi|167581325|ref|ZP_02374199.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia thailandensis TXDOH]
gi|167619407|ref|ZP_02388038.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia thailandensis Bt4]
gi|257138606|ref|ZP_05586868.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia thailandensis E264]
gi|83652377|gb|ABC36440.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia thailandensis E264]
Length = 179
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCEGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|170717785|ref|YP_001783506.1| BadM/Rrf2 family transcriptional regulator [Haemophilus somnus
2336]
gi|168825914|gb|ACA31285.1| transcriptional regulator, BadM/Rrf2 family [Haemophilus somnus
2336]
Length = 135
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ + P ++ I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MKLTSKGRYAVTAILDIALNAELGPVSLADISERQHISLSYLEQLFAKLRRGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L DQI+I V+ A E+ V +C + DC C S+ +
Sbjct: 61 PGGGYQLGLSTDQISIGMVINAVNENINVTKCLGNG--DCQGGVKCLTHSLWEELSVRIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
+ L + +I LV ++
Sbjct: 119 NFLNEITIAELVAKQAK 135
>gi|262278963|ref|ZP_06056748.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
gi|262259314|gb|EEY78047.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
Length = 157
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKANCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + S+ L+ +
Sbjct: 119 DYLAKISLADLISRDN 134
>gi|134298630|ref|YP_001112126.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum
reducens MI-1]
gi|134051330|gb|ABO49301.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
reducens MI-1]
Length = 149
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A+H P + +AE ISE +L +++ L K G+V+++RG
Sbjct: 1 MRLSTKGHYGLKAMFDLAMHYGSEPIPLKVVAERQNISEHYLEQLIAVLRKVGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L +P I + DVV+A E +C + + C V C + + ++
Sbjct: 61 AQGGYILAKPPSDIKVGDVVRALEGPIAPLDCVSELEPTVCEKVDYCISRDIWARVRDSI 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+VL ++E +
Sbjct: 121 AEVLDSITLEDMCLEAQK 138
>gi|123440766|ref|YP_001004758.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|189030891|sp|A1JIS1|NSRR_YERE8 RecName: Full=HTH-type transcriptional repressor nsrR
gi|122087727|emb|CAL10512.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 141
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ + + K+
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138
>gi|77460834|ref|YP_350341.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas fluorescens
Pf0-1]
gi|77384837|gb|ABA76350.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
fluorescens Pf0-1]
Length = 163
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES +C DC +C +
Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGQG--DCHSGDTCLTHHLWCDLSLQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|149376004|ref|ZP_01893770.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893]
gi|149359641|gb|EDM48099.1| hypothetical protein MDG893_03460 [Marinobacter algicola DG893]
Length = 145
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 86/143 (60%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL+Y A+ D I QIA++ IS L K++ L K G +ETVRG+
Sbjct: 1 MHITRYTDYSLRVLVYLAVQGDELATIQQIADSYEISRNHLMKVVHQLNKKGYIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG+RL + I + +V+ TE+ V ECF+S C + CGL S+ +AL AF +
Sbjct: 61 KGGMRLHMAPEDINVGILVRETEQDLSVVECFSSGDA-CRITPVCGLKSMFGEALAAFLE 119
Query: 121 VLTQYSIECLVRN--RSSIKKIF 141
VL +Y++ ++ + R + ++
Sbjct: 120 VLDRYTLADIIHDQHRPQLLRLL 142
>gi|308446118|ref|XP_003087101.1| hypothetical protein CRE_03606 [Caenorhabditis remanei]
gi|308262503|gb|EFP06456.1| hypothetical protein CRE_03606 [Caenorhabditis remanei]
Length = 271
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A D P I++IAE +SE L KI+ + K G + T RG+
Sbjct: 1 MQLNKFTDYALRILMYIAPPKDVPYTIAEIAEDLHVSENHLVKIVHFMGKQGWLITTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + + +V+ + + EC + C L CGL +L +A+ F+
Sbjct: 61 GGGLRLNPDILEFRLGHIVRILQRDAQIVEC---NTPPCVLRPRCGLKGILDQAVEQFYQ 117
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L Y++ ++ KI N+
Sbjct: 118 SLDHYTVADVLNAPPQHPKIVNS 140
>gi|262274800|ref|ZP_06052611.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886]
gi|262221363|gb|EEY72677.1| iron-sulfur cluster regulator IscR [Grimontia hollisae CIP 101886]
Length = 174
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H++ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSEAGPVPLADISERQGISLSYLEQLFSRLRKAGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A++I + V+ A +ES +C K DC C ++ R
Sbjct: 61 PGGGYRLGVSANEIAVGMVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSARIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+++
Sbjct: 119 SFLNDITLGELMQDNE 134
>gi|326791918|ref|YP_004309739.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Clostridium lentocellum DSM 5427]
gi|326542682|gb|ADZ84541.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
lentocellum DSM 5427]
Length = 149
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ ++ +++ + + IAE +SE +L +++ L K +V + RG
Sbjct: 1 MKLSTKGRYGLQAMVDLGVYSKEKHISLKSIAERLSMSENYLEQLMALLKKNKLVISQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L +P ++ITI +V++A E S +C C L G C SV K ++
Sbjct: 61 AQGGYALAKPPEEITIGEVLRALEGSLAPTDCTCKDGDTHCFLDGKCVTKSVWEKIRDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V+ +++ L+ + I +
Sbjct: 121 DRVVDNITLDQLMADYEKINE 141
>gi|85059748|ref|YP_455450.1| DNA-binding transcriptional regulator IscR [Sodalis glossinidius
str. 'morsitans']
gi|119371153|sp|Q2NS30|ISCR_SODGM RecName: Full=HTH-type transcriptional regulator iscR
gi|84780268|dbj|BAE75045.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 165
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P +++I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSGKGPVPLAEISERQGISLSYLEQLFSRLRKHELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +DQI + V+ A +ES C K C C + R
Sbjct: 61 PGGGYLLGRDSDQIAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHVLWRDLSVRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L ++ LV N +
Sbjct: 119 EFLNNITLAELVSNEEIL 136
>gi|218708628|ref|YP_002416249.1| putative transcriptional regulator [Vibrio splendidus LGP32]
gi|254806057|sp|B7VJS5|ISCR_VIBSL RecName: Full=HTH-type transcriptional regulator iscR
gi|218321647|emb|CAV17599.1| Predicted transcriptional regulator [Vibrio splendidus LGP32]
Length = 173
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I + V+ A +ES +C + DC C ++ R +
Sbjct: 61 PGGGYRLGAEASDIAVGTVIAAVDESVDATKCHG--RADCQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ L+++ ++
Sbjct: 119 SFLNDITLGELMKDNEVLE 137
>gi|328950902|ref|YP_004368237.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus
hydrothermalis DSM 14884]
gi|328451226|gb|AEB12127.1| transcriptional regulator, BadM/Rrf2 family [Marinithermus
hydrothermalis DSM 14884]
Length = 155
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + P + +AEA IS+ +L +I L +AG + +VRG
Sbjct: 1 MWVSTKAQYGLRALVEIGLRGPGPVPLKDVAEAQEISQHYLEQIAAALRRAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL R + IT L+VV+A E S C C VG C ++ ++ A +
Sbjct: 61 KGGYRLARSPENITALEVVEAMEGSLAPVSCLEDP-ESCWQVGHCSTENLWKRVDAAMRE 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL + ++ L+ R I+
Sbjct: 120 VLGKTTLRDLIEERRLIEA 138
>gi|295102090|emb|CBK99635.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
prausnitzii L2-6]
Length = 143
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H ++ + ++A ISE +L IL+ LV+ G +E +RG
Sbjct: 1 MIVSTKGRYALRVMIDLAEHRSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R DQ T+ +++ TE S C CP + C ++ + +
Sbjct: 61 KGGGYRLTREPDQYTVGEILTLTEGSLAPVSCLVQGAAPCPRMSGCRTYNMWKGLDDLIE 120
Query: 120 DVLTQYSIECLVR 132
D + ++ L
Sbjct: 121 DYFGKITLADLAA 133
>gi|293608203|ref|ZP_06690506.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292828776|gb|EFF87138.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 161
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 5 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 65 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 122
Query: 120 DVLTQYSIECLVRN 133
D L + S+ L+
Sbjct: 123 DYLAKISLADLISR 136
>gi|53719900|ref|YP_108886.1| hypothetical protein BPSL2290 [Burkholderia pseudomallei K96243]
gi|53723804|ref|YP_103329.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei ATCC 23344]
gi|67643001|ref|ZP_00441751.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei GB8 horse 4]
gi|76811684|ref|YP_334120.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1710b]
gi|121598333|ref|YP_993530.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei SAVP1]
gi|124385259|ref|YP_001029043.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei NCTC 10229]
gi|126440264|ref|YP_001059626.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 668]
gi|126453431|ref|YP_001066909.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1106a]
gi|134277379|ref|ZP_01764094.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 305]
gi|167000648|ref|ZP_02266459.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei PRL-20]
gi|167720354|ref|ZP_02403590.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei DM98]
gi|167739346|ref|ZP_02412120.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 14]
gi|167816561|ref|ZP_02448241.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 91]
gi|167824956|ref|ZP_02456427.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 9]
gi|167846474|ref|ZP_02471982.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei B7210]
gi|167895052|ref|ZP_02482454.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 7894]
gi|167903439|ref|ZP_02490644.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei NCTC 13177]
gi|167911687|ref|ZP_02498778.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 112]
gi|167919687|ref|ZP_02506778.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei BCC215]
gi|217420795|ref|ZP_03452300.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 576]
gi|237813020|ref|YP_002897471.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei MSHR346]
gi|242314619|ref|ZP_04813635.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1106b]
gi|254184365|ref|ZP_04890955.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1655]
gi|254191399|ref|ZP_04897903.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei Pasteur 52237]
gi|254195785|ref|ZP_04902211.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei S13]
gi|254200287|ref|ZP_04906653.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei FMH]
gi|254209363|ref|ZP_04915709.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei JHU]
gi|254258189|ref|ZP_04949243.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1710a]
gi|254297029|ref|ZP_04964482.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 406e]
gi|254357966|ref|ZP_04974239.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei 2002721280]
gi|262193304|ref|YP_001081037.2| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei NCTC 10247]
gi|52210314|emb|CAH36293.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52427227|gb|AAU47820.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei ATCC 23344]
gi|76581137|gb|ABA50612.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1710b]
gi|121227143|gb|ABM49661.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei SAVP1]
gi|124293279|gb|ABN02548.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei NCTC 10229]
gi|126219757|gb|ABN83263.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 668]
gi|126227073|gb|ABN90613.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1106a]
gi|134251029|gb|EBA51108.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 305]
gi|147749883|gb|EDK56957.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei FMH]
gi|147750136|gb|EDK57207.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei JHU]
gi|148027093|gb|EDK85114.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei 2002721280]
gi|157807904|gb|EDO85074.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 406e]
gi|157939071|gb|EDO94741.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei Pasteur 52237]
gi|169652530|gb|EDS85223.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei S13]
gi|184214896|gb|EDU11939.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1655]
gi|217396207|gb|EEC36224.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 576]
gi|237504649|gb|ACQ96967.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei MSHR346]
gi|238524238|gb|EEP87672.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei GB8 horse 4]
gi|242137858|gb|EES24260.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1106b]
gi|243063456|gb|EES45642.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei PRL-20]
gi|254216878|gb|EET06262.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei 1710a]
gi|261835045|gb|ABO04812.2| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia mallei NCTC 10247]
Length = 179
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACEGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|113970076|ref|YP_733869.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4]
gi|114047317|ref|YP_737867.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7]
gi|117920724|ref|YP_869916.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
gi|126174611|ref|YP_001050760.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS155]
gi|153000907|ref|YP_001366588.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS185]
gi|160875615|ref|YP_001554931.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS195]
gi|217973136|ref|YP_002357887.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS223]
gi|304408985|ref|ZP_07390606.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS183]
gi|307302988|ref|ZP_07582743.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
BA175]
gi|113884760|gb|ABI38812.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4]
gi|113888759|gb|ABI42810.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7]
gi|117613056|gb|ABK48510.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
gi|125997816|gb|ABN61891.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS155]
gi|151365525|gb|ABS08525.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS185]
gi|160861137|gb|ABX49671.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS195]
gi|217498271|gb|ACK46464.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS223]
gi|304352806|gb|EFM17203.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS183]
gi|306913348|gb|EFN43770.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
BA175]
Length = 153
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+ I++ VV A +ES C +C C S+
Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L++ R
Sbjct: 119 DFLDGISLAGLMQKRD 134
>gi|229592453|ref|YP_002874572.1| hypothetical protein PFLU5069 [Pseudomonas fluorescens SBW25]
gi|229364319|emb|CAY52066.1| conserved hypothetical protein [Pseudomonas fluorescens SBW25]
Length = 225
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 63 MRLTTKGRYAVTAMLDLALHAQTGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES +C DC +C +
Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 180
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 181 EFLSGISLADLVTRRE 196
>gi|295676942|ref|YP_003605466.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1002]
gi|295436785|gb|ADG15955.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1002]
Length = 176
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+++T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEEVTVADIIIAVDEPLDATQCGGKGTCEGTKQHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|78222091|ref|YP_383838.1| BadM/Rrf2 family transcriptional regulator [Geobacter
metallireducens GS-15]
gi|78193346|gb|ABB31113.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
metallireducens GS-15]
Length = 142
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R Y +R ++ ++H++ P + IA I +L ++ L + IVE+VRG
Sbjct: 1 MRLSTRAQYAVRAMVDLSLHSEGRPVSLKDIALREDIPLNYLEQLFNRLRRGAIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R + I + ++V EE C K C +C +V
Sbjct: 61 PGGGYLLARESSAIRVGEIVATVEEPLTPVSCMDKGKGRCTRTAACTTHNVWEMLGERIR 120
Query: 120 DVLTQYSIECLV 131
L ++E LV
Sbjct: 121 TFLDSITLEDLV 132
>gi|218887677|ref|YP_002436998.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758631|gb|ACL09530.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 150
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/136 (34%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+L+ A+H D P I IA+ IS +L K+++ L KAG + + G
Sbjct: 1 MKLTTRSRYGTRMLLDIAMHGTDAPVSIRDIAKRQGISVKYLEKLIRVLRKAGYIRSTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +PA +I + DVV A EES C CP + C ++ +A A +
Sbjct: 61 AHGGYQLTQPASEIPVGDVVFALEESLAPYTC-DEENPCCPRMAVCLTRTIWDEASRAMY 119
Query: 120 DVLTQYSIECLVRNRS 135
L +++ L+R+ S
Sbjct: 120 KKLNSFTLADLMRDAS 135
>gi|90417479|ref|ZP_01225402.1| rrf2 family protein [marine gamma proteobacterium HTCC2207]
gi|90330720|gb|EAS45999.1| rrf2 family protein [marine gamma proteobacterium HTCC2207]
Length = 158
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ IH +D P +S+I++ IS +L ++ L +A +V +VRG
Sbjct: 1 MKLTTKGRYAVTAMLDLTIHCDDKPVSLSEISQRQSISLSYLEQLFSKLRQAELVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R ++ + I +++ A ES C K DC C S+ + +
Sbjct: 61 PGGGYRLGRSSETVFIAEIIDAVNESVDSTNC--QGKGDCQGGEICLTHSLWDQLSHEIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L S+ LV R
Sbjct: 119 NFLNAISLADLVARRD 134
>gi|238916580|ref|YP_002930097.1| cysteine desulfurase [Eubacterium eligens ATCC 27750]
gi|238871940|gb|ACR71650.1| cysteine desulfurase [Eubacterium eligens ATCC 27750]
Length = 143
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A HN + IA ISE +L I+ L K + ++RG
Sbjct: 1 MKISTKGRYALRVMIDLAEHNTGEYIPLMDIARRQDISEKYLEAIVATLSKNDFLISLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L R + ++L ++ TE S C CP V C +
Sbjct: 61 KGGGYKLARNPEDYSVLSILLVTEGSLAPVACLEKKPNRCPKVAECKTLQMWENFEKLVN 120
Query: 120 DVLTQYSIECLVRNR 134
D + +I LV +
Sbjct: 121 DYFSNITIADLVNSN 135
>gi|90021059|ref|YP_526886.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
degradans 2-40]
gi|89950659|gb|ABD80674.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
degradans 2-40]
Length = 164
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+ IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQSGPVSLADISRRQQISLSYLEQLFAKLRQSTLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A + + ++ A ES C + +C C + +
Sbjct: 61 PGGGYKLNRSAADVHVAQIIDAVNESVDATNC--GGQGNCQQGEVCLTHYLWSDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
L+ S+ L+ +
Sbjct: 119 TFLSGISLADLLARQD 134
>gi|253682230|ref|ZP_04863027.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
botulinum D str. 1873]
gi|253561942|gb|EES91394.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
botulinum D str. 1873]
Length = 144
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ AI+ ++ P I IA ISEL+L ++ PL KA ++++VRG
Sbjct: 1 MKLSTKGRYGVRAMVDLAINYSESPVSIKSIAGRQNISELYLEQLFSPLRKAKLIKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +I++ D++ E ++ C S +C + C + K N+
Sbjct: 61 AQGGYVLSKHPKEISVSDIIDVLEGPIEISSCIDSG--ECNNMEVCPSRLLWEKIKNSID 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
+V +++ + + +K
Sbjct: 119 EVTKSITLQDMANDYKRLK 137
>gi|254515564|ref|ZP_05127624.1| iron-sulfur cluster assembly transcription factor IscR [gamma
proteobacterium NOR5-3]
gi|219675286|gb|EED31652.1| iron-sulfur cluster assembly transcription factor IscR [gamma
proteobacterium NOR5-3]
Length = 160
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ P R++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALNEARGPIRLAAISERQGISLSYLEQLFAHLRRQNLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A+ I++ +V+ A E C DC +C + +
Sbjct: 61 PGGGYRLKRGAEDISVAEVISAVNEDTDATRCRGKG--DCQEGDTCLTHHLWMDLSDRIR 118
Query: 120 DVLTQYSIECLVRNRS 135
D LT S+ LV R
Sbjct: 119 DFLTDISLADLVARRE 134
>gi|291551296|emb|CBL27558.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus torques
L2-14]
Length = 142
Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +RV++ + D + +IA ISE +L IL+ LV G + +RG
Sbjct: 1 MIISTRGRYALRVMIDLSQQDPDSYTPLKEIAARQEISEKYLENILKSLVTQGFILGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + T+ ++ ATE S C H +C G C + K N
Sbjct: 61 KGGGYRLTKSPGEYTLASILHATEGSLAAVACLEDHAPECARAGQCPTRPIWEKLDNLIE 120
Query: 120 DVLTQYSIEC 129
D L ++
Sbjct: 121 DYLGSITLAD 130
>gi|157368684|ref|YP_001476673.1| transcriptional repressor NsrR [Serratia proteamaculans 568]
gi|189030889|sp|A8G8V5|NSRR_SERP5 RecName: Full=HTH-type transcriptional repressor nsrR
gi|157320448|gb|ABV39545.1| transcriptional regulator, BadM/Rrf2 family [Serratia
proteamaculans 568]
Length = 141
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISEVTEVYGVSRNHMVKIINQLSRVGFVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I + DVV+A E + C ++ C + +C L VL++ + F
Sbjct: 61 KNGGIRLGKPAETIRLGDVVRAL-EPLSLVNCNSTF---CHITPACRLKQVLQQGVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L +++ +V + S+ K+
Sbjct: 117 EELDSHTLADMVEDNPSLYKLL 138
>gi|238795296|ref|ZP_04638875.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC
29909]
gi|238725381|gb|EEQ16956.1| HTH-type transcriptional repressor nsrR [Yersinia intermedia ATCC
29909]
Length = 141
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+QI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPANQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ S + K+
Sbjct: 117 NELDNYTLADMVKDNSPLYKLL 138
>gi|149190102|ref|ZP_01868379.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1]
gi|148836132|gb|EDL53092.1| hypothetical protein VSAK1_12120 [Vibrio shilonii AK1]
Length = 168
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C DC C ++ R +
Sbjct: 61 PGGGYRLGAEASDIAIGTVIAAVDESVDATKCAGKG--DCQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 119 DFLNNITLGELMVDNEVLE 137
>gi|225573651|ref|ZP_03782406.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM
10507]
gi|225038990|gb|EEG49236.1| hypothetical protein RUMHYD_01845 [Blautia hydrogenotrophica DSM
10507]
Length = 134
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y IRV++ A ++ IA+ IS +L I+ L K G + + G
Sbjct: 1 MKISTKGRYAIRVMLDLAQQDPKAYTSVASIAQRQEISVKYLEMIISILNKGGYLRSQMG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG +L R A T+ ++++ TE S C + C +C + ++
Sbjct: 61 KKGGYQLARSAQDYTVGEILRLTEGSLAPVSCLECEEEACGRSMTCLTLPMWKELDRRIG 120
Query: 120 DVLTQYSIECLVRN 133
+ L ++ L++N
Sbjct: 121 EYLDSVTLADLLKN 134
>gi|212710633|ref|ZP_03318761.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM
30120]
gi|212686714|gb|EEB46242.1| hypothetical protein PROVALCAL_01699 [Providencia alcalifaciens DSM
30120]
Length = 165
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQTGPVPLADISERQGISLSYLEQLFSRLRKNDLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ADQI + +V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGRDADQIFVAEVIAAVDESVDATRCQGN-KEGCQNGDRCLTHALWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S++ LV+N+ +
Sbjct: 120 SFLSSISLDELVKNQEVM 137
>gi|262376138|ref|ZP_06069368.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter lwoffii SH145]
gi|262308739|gb|EEY89872.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter lwoffii SH145]
Length = 157
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPSEKTITLAEIAARQTISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L +++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARNADEITVLAIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + S+ LV +
Sbjct: 119 DYLEKISLADLVARDN 134
>gi|257093603|ref|YP_003167244.1| BadM/Rrf2 family transcriptional regulator [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046127|gb|ACV35315.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 164
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ ++ P ++ I+E IS +L ++ L + G+V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRCSEGPVTLAGISERQKISLSYLEQLFGKLRRYGLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP Q+T+ D+++A +E +C + +C C + F
Sbjct: 61 PGGGYCLARPTSQMTVTDIIRAVDEPLDATQC--GGRENCHDDERCMTHELWTTLNEKMF 118
Query: 120 DVLTQYSIECLVRNR 134
D L+ ++ LV +
Sbjct: 119 DYLSSVTLNELVDQQ 133
>gi|24373816|ref|NP_717859.1| Rrf2 family protein [Shewanella oneidensis MR-1]
gi|120598676|ref|YP_963250.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1]
gi|146293246|ref|YP_001183670.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens
CN-32]
gi|24348214|gb|AAN55303.1|AE015668_4 Rrf2 family protein [Shewanella oneidensis MR-1]
gi|120558769|gb|ABM24696.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
W3-18-1]
gi|145564936|gb|ABP75871.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
putrefaciens CN-32]
gi|319426240|gb|ADV54314.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
putrefaciens 200]
Length = 153
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+ I++ VV A +ES C +C C S+
Sbjct: 61 PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L++ R
Sbjct: 119 DFLDGISLAGLMQKRD 134
>gi|291618422|ref|YP_003521164.1| YfhP [Pantoea ananatis LMG 20103]
gi|291153452|gb|ADD78036.1| YfhP [Pantoea ananatis LMG 20103]
Length = 170
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 6 MRLTSKGRYAVTAMLDVALHSHQGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 65
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A+ I + +V+ A +ES +C K C C + R
Sbjct: 66 PGGGYLLGKEANAIAVGEVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 123
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L ++ LV N+ +
Sbjct: 124 EFLNNITLAELVNNQEIL 141
>gi|312962917|ref|ZP_07777404.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
fluorescens WH6]
gi|311282944|gb|EFQ61538.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
fluorescens WH6]
Length = 225
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 63 MRLTTKGRYAVTAMLDLALHAQAGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 122
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES +C DC +C +
Sbjct: 123 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 180
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 181 EFLSGISLADLVTRRE 196
>gi|28897369|ref|NP_796974.1| hypothetical protein VP0595 [Vibrio parahaemolyticus RIMD 2210633]
gi|81839883|sp|Q87S29|ISCR_VIBPA RecName: Full=HTH-type transcriptional regulator iscR
gi|28805581|dbj|BAC58858.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|328472608|gb|EGF43471.1| hypothetical protein VP10329_12296 [Vibrio parahaemolyticus 10329]
Length = 168
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C K DC C ++ R +
Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 119 DFLNNITLGELMTDNEVLE 137
>gi|329297589|ref|ZP_08254925.1| DNA-binding transcriptional regulator IscR [Plautia stali symbiont]
Length = 165
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKDAGAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSERIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 YFLNNITLAELVNNQEIL 136
>gi|300312445|ref|YP_003776537.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
gi|300075230|gb|ADJ64629.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
Length = 164
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P +S I+E IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQGKGPVTLSAISERQEISLSYLEQLFGKLRRHQIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALN 116
GG L R A +++ D++ A +E +C P C +
Sbjct: 61 PGGGYNLARKAADVSVADIIIAVDEPLDATQCGGKENCHSASHPGGARCMTHDLWSTLNE 120
Query: 117 AFFDVLTQYSIECLVRNRSS 136
+ L S++ LV +
Sbjct: 121 KMVEYLDSVSLQDLVDQQKE 140
>gi|296157751|ref|ZP_06840585.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
Ch1-1]
gi|295891997|gb|EFG71781.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
Ch1-1]
Length = 166
Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + + I I++A IS+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIRDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL +T+ ++V+ATE F + CF + + C + C L L A +A
Sbjct: 61 NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
F L +++I + + + +
Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145
>gi|239994262|ref|ZP_04714786.1| transcriptional regulator, BadM/Rrf2 family protein [Alteromonas
macleodii ATCC 27126]
Length = 161
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSKRGPVPLADISERQEISLSYLEQLFSRLRKEQLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +I I +V++A +ES C + DC C S+ + +
Sbjct: 61 PGGGYLLGREASKIAIGEVIRAVDESIDATRC--QGQADCQGGDRCLTHSLWQDLSDRIA 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+ R
Sbjct: 119 AFLNSITLGELMAKRD 134
>gi|186476217|ref|YP_001857687.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
STM815]
gi|184192676|gb|ACC70641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum
STM815]
Length = 174
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNA 117
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGSCEGTKHHDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + S +
Sbjct: 121 MVEYLDSVSLKDLVDQQRSRE 141
>gi|82701807|ref|YP_411373.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
multiformis ATCC 25196]
gi|82409872|gb|ABB73981.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
multiformis ATCC 25196]
Length = 157
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+H+ D P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALHSADGPVTLAGISERQKISLSYLEQLFGKLRRSKLVGSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +P +++++D++ A +E +C K +C C +
Sbjct: 61 PGGGYRLTKPMSEVSVVDIILAVDEPIDATQC--GGKENCHNDQRCMTHDLWANLNARIR 118
Query: 120 DVLTQYSIECLVRNRS 135
D L ++E LV N
Sbjct: 119 DYLALVTLEQLVSNPK 134
>gi|167563359|ref|ZP_02356275.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia oklahomensis EO147]
gi|167570529|ref|ZP_02363403.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia oklahomensis C6786]
Length = 179
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACEGTKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|56708970|ref|YP_165015.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
gi|56680655|gb|AAV97320.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
Length = 160
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 73/143 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++K +DY +R+L++ A +IA+ + L KI Q L G VE+VRGR
Sbjct: 1 MQISKFSDYALRILIHLATSEGGLMSTREIADLQQLPFNHLAKISQWLTHEGYVESVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D I+I +++ +E + EC C + +CGL +L +A AFF
Sbjct: 61 HGGMRLALPPDAISIGGLLRKSERGTPLVECMKEGGGCCVMTPACGLLPILIEAQEAFFH 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L +++ ++ ++ + A
Sbjct: 121 SLDGSTLQDVLSGNRGMQNLIRA 143
>gi|319783139|ref|YP_004142615.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169027|gb|ADV12565.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 154
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 79/142 (55%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R+LMYCA ++D +RI +IA A +SELFLFKILQPLV+ G+V+TVRGR
Sbjct: 1 MRLTRQTNYAMRILMYCAANDDRLSRIPEIAAAYSVSELFLFKILQPLVEHGLVQTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF
Sbjct: 61 NGGVKLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y+I LV R +++ +
Sbjct: 121 VLARYTIADLVAARPNVRNLLG 142
>gi|187923802|ref|YP_001895444.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Burkholderia phytofirmans PsJN]
gi|187714996|gb|ACD16220.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
phytofirmans PsJN]
Length = 166
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + I I++A IS+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGGGLSTIQDISDAYGISKNHLMKVVQQLGELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ ++V+ATE F + CF + C + C L L A NA
Sbjct: 61 NGGLRLAEQTNALTVGEIVRATESDFALVGCFPDQHGERRGCVITAQCRLRGALEAARNA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
F L +++I + + + +
Sbjct: 121 FLTELDRHTIGEVAQPHGPLAALLG 145
>gi|167031899|ref|YP_001667130.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
GB-1]
gi|166858387|gb|ABY96794.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
GB-1]
Length = 182
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 20 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 79
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + I + V+ A ES C DC +C +
Sbjct: 80 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 137
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 138 EFLSGISLADLVMRRE 153
>gi|126738163|ref|ZP_01753884.1| Rrf2 family protein [Roseobacter sp. SK209-2-6]
gi|126720660|gb|EBA17365.1| Rrf2 family protein [Roseobacter sp. SK209-2-6]
Length = 151
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 73/143 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++K +DY +R+L++ A H D +IA+ + L KI Q L G VE++RGR
Sbjct: 1 MQISKFSDYALRILIHLATHEDGLMSTREIAQMQKLPFNHLAKISQWLTHEGYVESLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P + I+I +++ +E + EC C + +CGL +L +A FF
Sbjct: 61 NGGMRLALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILNEAQEMFFT 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L ++ ++ ++ + A
Sbjct: 121 TLDSKTLHDVLSGNGGMRNLLRA 143
>gi|163742862|ref|ZP_02150246.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10]
gi|161383826|gb|EDQ08211.1| Rrf2 family protein [Phaeobacter gallaeciensis 2.10]
Length = 151
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 74/143 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++K +DY +R+L++ + H + +IAE + L KI Q L G VE+VRGR
Sbjct: 1 MQISKFSDYALRILIHLSTHEEGLMSTREIAEMQKLPFNHLAKISQWLTHEGYVESVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+R+ P + I+I +++ +E + EC C + +CGL +L +A FF
Sbjct: 61 NGGMRMALPPEAISIGGLLRKSERGTPLVECMKEDGGCCVMTPACGLLPILTEAQEVFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L +++ ++ +K + A
Sbjct: 121 ALDSKTLQNVLEGNRGMKNLIRA 143
>gi|186475702|ref|YP_001857172.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815]
gi|184192161|gb|ACC70126.1| transcriptional regulator, TrmB [Burkholderia phymatum STM815]
Length = 175
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 80/147 (54%), Gaps = 5/147 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ ++ I I++A IS+ L K++Q L + G VETVRGR
Sbjct: 11 MRLTDYTDYSLRVLLYLAVRSEGLATIQDISDAYGISKNHLMKVVQRLAELGWVETVRGR 70
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKAL 115
GG+RL + +T+ +VV+ATE F + C + +C + C L S+L A
Sbjct: 71 NGGLRLYEHSSSLTVGEVVRATESDFALVSCLNVADASGAHRECVIQSHCRLKSILESAR 130
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
+AFF L Y+I + S + +
Sbjct: 131 DAFFRELDNYTIRDIAEPASPLISLLG 157
>gi|67459267|ref|YP_246891.1| putative transcriptional regulator [Rickettsia felis URRWXCal2]
gi|67004800|gb|AAY61726.1| Putative transcriptional regulator [Rickettsia felis URRWXCal2]
Length = 142
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 66/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+
Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERVCSVKEISEYYNISLNHLVKVIHKLAQLGYINSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L + + D+++ E + + ECF + C + SC +++A AF
Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120
Query: 121 VLTQYSIEC 129
L Y++E
Sbjct: 121 TLNNYTLED 129
>gi|91225151|ref|ZP_01260373.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01]
gi|91190094|gb|EAS76365.1| hypothetical protein V12G01_13025 [Vibrio alginolyticus 12G01]
Length = 168
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C K DC C ++ R +
Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 119 DFLNNITLGELMTDNEVLE 137
>gi|13471232|ref|NP_102801.1| iron-responsive transcriptional regulator [Mesorhizobium loti
MAFF303099]
gi|14021976|dbj|BAB48587.1| Aau3 protein [Mesorhizobium loti MAFF303099]
Length = 153
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 81/142 (57%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R+LMYCA +ND +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYAMRILMYCAANNDRLSRIPEIATAYSVSELFLFKILQPLVENGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A+ I++ DVV+ TEESF +AECF + +CPLV SC L S LR+ALNAFF
Sbjct: 61 NGGVRLGRAAEAISLFDVVRVTEESFAMAECFENDAAECPLVDSCALNSALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y+I +V R +++ +
Sbjct: 121 VLARYTIADMVAARPNVRNLLG 142
>gi|167856166|ref|ZP_02478905.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
29755]
gi|219870330|ref|YP_002474705.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus
parasuis SH0165]
gi|167852724|gb|EDS23999.1| putative HTH-type transcriptional regulator [Haemophilus parasuis
29755]
gi|219690534|gb|ACL31757.1| HTH-type transcriptional regulator, BadM/Rrf2 family [Haemophilus
parasuis SH0165]
Length = 148
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ A+H D P + I++ IS +L ++ L + G+V +VRG
Sbjct: 1 MKLTSRGRYAVTAILDIALHGKDMPVSLVDISDRQAISLSYLEQLFAQLRREGLVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + ++I + ++ A ES V++C + +C C S+ + N
Sbjct: 61 PGGGYQLAKTPEEINVSLIIAAVNESVDVSKCKGNG--NCSNNSRCLTHSLWERLENQIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ LV S
Sbjct: 119 QYLHTITLAELVEENSD 135
>gi|85860337|ref|YP_462539.1| rrf2 family protein [Syntrophus aciditrophicus SB]
gi|85723428|gb|ABC78371.1| rrf2 family protein [Syntrophus aciditrophicus SB]
Length = 184
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 76/140 (54%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R ++ A+H N+ P + IA+ ISE +L++++ PL AG++ + RG
Sbjct: 43 MKLSTRGRYGLRFMLDLAVHYNEGPIFLKDIAQRQGISEKYLWQLIHPLKTAGLINSTRG 102
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + + IT+ D+++ E + +C + I C +C +V ++A
Sbjct: 103 AHGGYQLAKNPEDITLKDIMQVVEGPLCLVDCVDNASI-CERASTCITRNVWQEATRVIL 161
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L ++E +V+ ++ +K
Sbjct: 162 KTLESLTLETMVKRQTEKEK 181
>gi|332160028|ref|YP_004296605.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|325664258|gb|ADZ40902.1| transcriptional repressor NsrR [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330862089|emb|CBX72255.1| HTH-type transcriptional repressor nsrR [Yersinia enterocolitica
W22703]
Length = 141
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ + + K+
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138
>gi|311281270|ref|YP_003943501.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
SCF1]
gi|308750465|gb|ADO50217.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
SCF1]
Length = 141
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRVGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C + C + +C L L A+ +F
Sbjct: 61 KNGGIRLGKPAETIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSNAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138
>gi|330817662|ref|YP_004361367.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3]
gi|327370055|gb|AEA61411.1| Predicted transcriptional regulator [Burkholderia gladioli BSR3]
Length = 179
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAADVTVADIIIAVDEPLDATQCGGKGTCEGTKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|160895037|ref|ZP_02075811.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50]
gi|156863468|gb|EDO56899.1| hypothetical protein CLOL250_02587 [Clostridium sp. L2-50]
Length = 156
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + Y +R+++Y A ++ P I +A+ IS+ +L +I+ L G+V +VRG
Sbjct: 13 LKISTKGRYALRLMIYIAANSNGKPVSIKDVAKNEDISDKYLEQIISILNSGGLVRSVRG 72
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT+ V++ TE + C +C C ++ ++ +A
Sbjct: 73 PQGGYLLRKAPEDITVGAVLRLTEGTLAPVACVEEDAPECERESICSTYNLWKQLYSAIC 132
Query: 120 DVLTQYSIECLVRNRSS 136
V+ +I L +R
Sbjct: 133 SVVDTTTIADLCNSRPE 149
>gi|16767613|ref|NP_463228.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56416158|ref|YP_153233.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161617637|ref|YP_001591602.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Paratyphi B str. SPB7]
gi|162139505|ref|YP_219230.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|167553785|ref|ZP_02347531.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|168231405|ref|ZP_02656463.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|168239662|ref|ZP_02664720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|168245155|ref|ZP_02670087.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|168263280|ref|ZP_02685253.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|194449946|ref|YP_002048410.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194470152|ref|ZP_03076136.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194735133|ref|YP_002117308.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197247528|ref|YP_002149281.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197365083|ref|YP_002144720.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|200387819|ref|ZP_03214431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204927167|ref|ZP_03218369.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205355124|ref|YP_002228925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|207859512|ref|YP_002246163.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|238910525|ref|ZP_04654362.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Tennessee str. CDC07-0191]
gi|81361477|sp|Q5PL57|NSRR_SALPA RecName: Full=HTH-type transcriptional repressor nsrR
gi|81520811|sp|Q8ZKA3|NSRR_SALTY RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372261|sp|Q57GL3|NSRR_SALCH RecName: Full=HTH-type transcriptional repressor nsrR
gi|189030888|sp|A9N4Z2|NSRR_SALPB RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737674|sp|B5F393|NSRR_SALA4 RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737675|sp|B5R0P4|NSRR_SALEP RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737676|sp|B5R9C4|NSRR_SALG2 RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737677|sp|B4TFB2|NSRR_SALHS RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737678|sp|B5BKI6|NSRR_SALPK RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737679|sp|B4TSF8|NSRR_SALSV RecName: Full=HTH-type transcriptional repressor nsrR
gi|16422928|gb|AAL23187.1| putative negative regulator [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|56130415|gb|AAV79921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|161367001|gb|ABX70769.1| hypothetical protein SPAB_05500 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194408250|gb|ACF68469.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL476]
gi|194456516|gb|EDX45355.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Kentucky str. CVM29188]
gi|194710635|gb|ACF89856.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. CVM19633]
gi|197096560|emb|CAR62170.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211231|gb|ACH48628.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197287648|gb|EDY27039.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Schwarzengrund str. SL480]
gi|199604917|gb|EDZ03462.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Virchow str. SL491]
gi|204323832|gb|EDZ09027.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Javiana str. GA_MM04042433]
gi|205274905|emb|CAR39972.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205321871|gb|EDZ09710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA29]
gi|205334382|gb|EDZ21146.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Kentucky str. CDC 191]
gi|205336063|gb|EDZ22827.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Heidelberg str. SL486]
gi|205348036|gb|EDZ34667.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Hadar str. RI_05P066]
gi|206711315|emb|CAR35693.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|261249457|emb|CBG27322.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267996699|gb|ACY91584.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhimurium str. 14028S]
gi|301160855|emb|CBW20386.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|320088794|emb|CBY98552.1| HTH-type transcriptional repressor nsrR [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322615529|gb|EFY12449.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 315996572]
gi|322618589|gb|EFY15478.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-1]
gi|322621998|gb|EFY18848.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-3]
gi|322627722|gb|EFY24513.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 495297-4]
gi|322631029|gb|EFY27793.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-1]
gi|322637752|gb|EFY34453.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 515920-2]
gi|322642416|gb|EFY39020.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 531954]
gi|322644015|gb|EFY40563.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. NC_MB110209-0054]
gi|322650483|gb|EFY46891.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. OH_2009072675]
gi|322653553|gb|EFY49881.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. CASC_09SCPH15965]
gi|322659738|gb|EFY55981.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 19N]
gi|322662051|gb|EFY58267.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 81038-01]
gi|322666200|gb|EFY62378.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. MD_MDA09249507]
gi|322672620|gb|EFY68731.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 414877]
gi|322676050|gb|EFY72121.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 366867]
gi|322680534|gb|EFY76572.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 413180]
gi|322684572|gb|EFY80576.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 446600]
gi|323192887|gb|EFZ78113.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 609458-1]
gi|323197237|gb|EFZ82377.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 556150-1]
gi|323201646|gb|EFZ86710.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 609460]
gi|323206160|gb|EFZ91122.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 507440-20]
gi|323213168|gb|EFZ97970.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 556152]
gi|323215542|gb|EGA00286.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. MB101509-0077]
gi|323227830|gb|EGA11984.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. MB110209-0055]
gi|323229000|gb|EGA13129.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. MB111609-0052]
gi|323236388|gb|EGA20464.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009083312]
gi|323238707|gb|EGA22759.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 2009085258]
gi|323241842|gb|EGA25871.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. 315731156]
gi|323248009|gb|EGA31946.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2009159199]
gi|323254660|gb|EGA38471.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008282]
gi|323258281|gb|EGA41958.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008283]
gi|323263573|gb|EGA47094.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008284]
gi|323265831|gb|EGA49327.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008285]
gi|323270275|gb|EGA53723.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. IA_2010008287]
gi|326630282|gb|EGE36625.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Gallinarum str. 9]
gi|332991178|gb|AEF10161.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhimurium str. UK-1]
Length = 141
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPANTICIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138
>gi|317049145|ref|YP_004116793.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
gi|316950762|gb|ADU70237.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
Length = 165
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKHGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES +C K C C + R
Sbjct: 61 PGGGYLLGKDAGAIAVGAVITAVDESVDATKC--QGKEGCQGGERCLTHVLWRDLSVRIS 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L ++ LV N+ +
Sbjct: 119 EFLNNITLAELVNNQEIL 136
>gi|238027044|ref|YP_002911275.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
glumae BGR1]
gi|237876238|gb|ACR28571.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
glumae BGR1]
Length = 156
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/147 (33%), Positives = 79/147 (53%), Gaps = 5/147 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKAL 115
GG+R+ + +T+ +VV+A E F + CF C + C L VL A
Sbjct: 61 NGGLRMNPASATLTVGEVVRAGESDFALVGCFGGEGEAIAHRGCVIEPHCRLKGVLAAAR 120
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
+AFF L +++I L + + +
Sbjct: 121 DAFFAELDRHTIADLTHPGAQLARALG 147
>gi|91783441|ref|YP_558647.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91687395|gb|ABE30595.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
xenovorans LB400]
Length = 166
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + + I I++A IS L K++Q L + G VETVRGR
Sbjct: 1 MRLTDYTDYSLRVLLYLAVRGEGLSTIQDISDAYGISRNHLMKVVQQLGELGWVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+RL +T+ ++V+ATE F + CF + + C + C L L A +A
Sbjct: 61 NGGLRLADRTSALTVGEIVRATESDFALVGCFPDQQGERRACVITSQCRLRGALEAARHA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
F L +++I + + + +
Sbjct: 121 FLSELDRHTIGEVAQPHGPLSALLG 145
>gi|167747110|ref|ZP_02419237.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662]
gi|167654070|gb|EDR98199.1| hypothetical protein ANACAC_01822 [Anaerostipes caccae DSM 14662]
Length = 150
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ + Y +R+L A HN + +++ IS +L +I++ L G ++++RG
Sbjct: 7 KISTKGRYAVRLLYDLAQHNTGEWISLKDVSKRQGISIKYLEQIVRQLSVCGYLKSLRGP 66
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG +L + + TI DV++ TE S C C C + D
Sbjct: 67 RGGYQLSKKPSEYTIEDVLEITEGSIAPVACLDDETNQCERYYDCPTIFIWEGLDKVVRD 126
Query: 121 VLTQYSIECLVRNRSS 136
L +I+ ++ +S
Sbjct: 127 YLGSVTIQDILDRAAS 142
>gi|152973049|ref|YP_001338195.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|206580843|ref|YP_002240865.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342]
gi|238892663|ref|YP_002917397.1| transcriptional repressor NsrR [Klebsiella pneumoniae NTUH-K2044]
gi|288937522|ref|YP_003441581.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Klebsiella variicola At-22]
gi|290512260|ref|ZP_06551627.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55]
gi|189030887|sp|A6TH94|NSRR_KLEP7 RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737672|sp|B5Y324|NSRR_KLEP3 RecName: Full=HTH-type transcriptional repressor nsrR
gi|150957898|gb|ABR79928.1| conserved protein, Winged helix domain [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|206569901|gb|ACI11677.1| transcriptional repressor NsrR [Klebsiella pneumoniae 342]
gi|238544979|dbj|BAH61330.1| putative HTH-type transcriptional repressor [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|288892231|gb|ADC60549.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
At-22]
gi|289775255|gb|EFD83256.1| HTH-type transcriptional repressor nsrR [Klebsiella sp. 1_1_55]
Length = 141
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA QI + DVV+ E + C + C + +C L L +A +F
Sbjct: 61 KNGGIRLGKPAGQIRVGDVVRDL-EPLSLVNCSSEF---CHITPACRLKQALAEAAQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 KELDNYTLADLVEKNQPLYKLL 138
>gi|238797601|ref|ZP_04641098.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC
43969]
gi|238718598|gb|EEQ10417.1| HTH-type transcriptional repressor nsrR [Yersinia mollaretii ATCC
43969]
Length = 141
Score = 128 bits (323), Expect = 2e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+QI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPAEQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ + + K+
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138
>gi|302879674|ref|YP_003848238.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
gi|302582463|gb|ADL56474.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
Length = 161
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 87/141 (61%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +D G+R+LMY A+ I + ++ IS+ L KI L K G++ ++RGR
Sbjct: 1 MKLTQYSDLGLRLLMYLALREGESVTIQEASDRFAISKNHLVKISHQLTKQGLIVSIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RP ++I + +V++ATEE+F + ECF + + C + G C L++VL AL AFF
Sbjct: 61 NGGVRLARPPERINVEEVLRATEENFDLVECFNAAQNRCVISGECKLSAVLDAALAAFFK 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL+ S+ LV N +I +
Sbjct: 121 VLSATSLADLVTNSQAIDQNL 141
>gi|254467326|ref|ZP_05080737.1| Rrf2 family protein [Rhodobacterales bacterium Y4I]
gi|206688234|gb|EDZ48716.1| Rrf2 family protein [Rhodobacterales bacterium Y4I]
Length = 149
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 58/143 (40%), Positives = 80/143 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA H D ++IAE C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCAAHEDRLVTKAEIAECCNISENHLAQVINQLSQLGYLTTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I I DV + E + + ECFA CPL G+C L L A AF+
Sbjct: 61 NGGMNLGRPAAEIRIGDVFRDVEGNLPMVECFADADNTCPLAGACRLKVALADAAQAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L S+E LV + + +I
Sbjct: 121 SLDDISLEALVCDNHDLLRILQP 143
>gi|325272149|ref|ZP_08138580.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51]
gi|171362773|dbj|BAG15850.1| probable transcriptional regulator [Pseudomonas putida]
gi|324102712|gb|EGC00128.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas sp. TJI-51]
Length = 163
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVMRRE 134
>gi|160943772|ref|ZP_02091003.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii
M21/2]
gi|158444946|gb|EDP21949.1| hypothetical protein FAEPRAM212_01267 [Faecalibacterium prausnitzii
M21/2]
Length = 189
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + ++ Y +R++ A + + +I+E +S +L +I+ PL + G+V++ RG
Sbjct: 33 MKFSTKSRYALRLMAELARYAPGTTVSLKEISERQNLSLKYLEQIVTPLARVGLVKSERG 92
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + T ++++A E S C S +CP+ C
Sbjct: 93 SQGGYRLTKDPADYTAGEILRAIEGSVAPIPCLGSVTNECPMSEQCFTLPFWAGLDEVIN 152
Query: 120 DVLTQYSIECLVRN 133
+ ++E L
Sbjct: 153 QYIDSVTLEQLASQ 166
>gi|46578944|ref|YP_009752.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|120603455|ref|YP_967855.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
DP4]
gi|464693|sp|P33395|RRF2_DESVH RecName: Full=Protein rrf2
gi|290384|gb|AAA72001.1| rrf2 [Desulfovibrio vulgaris str. Hildenborough]
gi|46448357|gb|AAS95011.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|120563684|gb|ABM29428.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
DP4]
gi|311232802|gb|ADP85656.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
RCH1]
Length = 150
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+L+ A+H + P I IA+ IS +L K+++ L KAG + + G
Sbjct: 1 MKLTTRSRYGTRMLLDIAMHGSEQPVSIKDIAQRQGISVKYLEKLIRVLRKAGYITSTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L A+ I + DVV A EE EC CP + C ++ +A A +
Sbjct: 61 AHGGYQLAHKAEDIPVGDVVYALEEMEAPVEC-DEENPCCPRMAVCLTRTIWGEAAKAMY 119
Query: 120 DVLTQYSIECLVRNRS 135
L +++ L+R+ S
Sbjct: 120 RKLNTFTLADLMRDAS 135
>gi|315267803|gb|ADT94656.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS678]
Length = 173
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 21 MKLTSKGRYAVTAMLDVAIHSASGPVPLADISERQGISLSYLEQLFAKLRKHGLVASVRG 80
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A+ I++ VV A +ES C +C C S+
Sbjct: 81 PGGGYRLGLEANDISVGMVVHAVDESVDATRCQGLG--NCQSGTRCLTHSLWGDLSKQIS 138
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L++ R
Sbjct: 139 DFLDGISLAGLMQKRD 154
>gi|210635349|ref|ZP_03298496.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279]
gi|210158434|gb|EEA89405.1| hypothetical protein COLSTE_02427 [Collinsella stercoris DSM 13279]
Length = 160
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H D + QIA ISE +L IL LV+ G++ +RG
Sbjct: 15 MLVSTKGRYALRVMVDLAEHRDEGRIPLRQIAVRQDISEKYLENILSTLVRHGMLSGLRG 74
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG L R ++ T+ ++++ TE S C C +C V +
Sbjct: 75 KGGGYCLTREPEEFTLGEILRLTEGSLSPVSCLNGPHNTCERAATCRTVRVWTELDRMIQ 134
Query: 120 DVLTQYSIECLV 131
+ L +I L+
Sbjct: 135 EYLDGVTIADLM 146
>gi|238764698|ref|ZP_04625642.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC
33638]
gi|238697094|gb|EEP89867.1| HTH-type transcriptional repressor nsrR [Yersinia kristensenii ATCC
33638]
Length = 141
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ + + K+
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138
>gi|302387262|ref|YP_003823084.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
gi|302197890|gb|ADL05461.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
Length = 143
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +R+++ A H ND + I++ IS+ +L +I+ L ++ ++ T RG
Sbjct: 1 MKISTRGRYSLRMMIDLAEHYNDEFIALKDISKRQNISKKYLEQIVPFLNRSNLLTTYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R QITI D++ ++E S C + C C + +
Sbjct: 61 HMGGYKLARHPSQITIGDILLSSEGSLNPVSCMDNDPSICARQEDCLTLPIWQGLSEVIA 120
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ R
Sbjct: 121 DYLNGITLQDILDRRPD 137
>gi|237808765|ref|YP_002893205.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
9187]
gi|237501026|gb|ACQ93619.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
9187]
Length = 171
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 4 MRLTSKGRYAVTAMLDVALHAELGPVPLADISERQGISLSYLEQLFARLRKNGLVSSVRG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL ADQI + ++ A ES C C C S+ R
Sbjct: 64 PGGGYRLGADADQIAVGKIIAAVNESVDATRCHGESG--CQGGVQCLTHSLWRDLSARIS 121
Query: 120 DVLTQYSIECLVRNRS 135
D L + ++ LVR
Sbjct: 122 DFLNEITLGELVRQAE 137
>gi|171320031|ref|ZP_02909102.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
gi|171094724|gb|EDT39767.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
Length = 179
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|294084466|ref|YP_003551224.1| BadM/Rrf2 family transcriptional regulator [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292664039|gb|ADE39140.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 149
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 75/141 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L +TDY +R LM A++ + IS+IAE IS+ L K++ L G + + GR
Sbjct: 1 MRLRLQTDYALRALMCLAVNTERRVMISEIAEQQSISKNHLIKVIHRLTGLGFINSQPGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA QI I D+++ E +CF C L+ C L +VL AL+AF+
Sbjct: 61 SGGLWLSRPAAQINIGDLIRQLEADSVFLDCFEGGAGRCRLIPQCQLKAVLADALDAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL ++++ + ++ +
Sbjct: 121 VLDRFTLAQVTSRPDELRALL 141
>gi|210622565|ref|ZP_03293247.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275]
gi|210154148|gb|EEA85154.1| hypothetical protein CLOHIR_01195 [Clostridium hiranonis DSM 13275]
Length = 155
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 71/135 (52%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A++ + P I I+E +SE +L +I L KAG+V+++RG
Sbjct: 1 MKLSTKGRYGLKAMFELALNYGEEPISIKYISEKQNVSERYLEQIFSKLKKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R D+I++ D++ E +++C + C C V +K NA
Sbjct: 61 SQGGYFLARKPDEISVGDILTVLEGPITISDCLKEEGV-CSNSDKCATRLVWKKMKNAID 119
Query: 120 DVLTQYSIECLVRNR 134
DV+ ++ +V +R
Sbjct: 120 DVVNTTFLQDMVDDR 134
>gi|91792814|ref|YP_562465.1| iron-sulfur cluster assembly transcription factor IscR [Shewanella
denitrificans OS217]
gi|91714816|gb|ABE54742.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
denitrificans OS217]
Length = 153
Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH+ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVAIHSTTGPVPLADISERQGISLSYLEQLFAKLRKEGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A I+I VV A +ES V C K +C C S+
Sbjct: 61 PGGGYHLGLEAKDISISMVVHAVDESVDVTRC--QGKGNCQSGTRCLTHSLWGDLSKQIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L S+ L++ R
Sbjct: 119 DFLDGISLAGLMQKRD 134
>gi|197304012|ref|ZP_03169044.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC
29176]
gi|197296980|gb|EDY31548.1| hypothetical protein RUMLAC_02749 [Ruminococcus lactaris ATCC
29176]
Length = 136
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +RV++ A + + +IA ISE +L IL+ LV G++ +RG
Sbjct: 1 MIISTRGRYALRVMIDLAGQDPNTYTPLKEIAARQEISEKYLENILKSLVTGGLIFGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + + TI +++ TE S C + +C C + +K
Sbjct: 61 KGGGYKLTKKPEDYTISSILRLTEGSLAPVACLEENATECEREAVCPTRPLWKKLDTLIQ 120
Query: 120 DVLTQYSIECLVR 132
D L S++ L+
Sbjct: 121 DYLGSVSLKDLID 133
>gi|238787545|ref|ZP_04631343.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii
ATCC 33641]
gi|238724332|gb|EEQ15974.1| HTH-type transcriptional repressor nsrR [Yersinia frederiksenii
ATCC 33641]
Length = 141
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPADQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ + + K+
Sbjct: 117 NELDNYTLADMVQDNAPLYKLL 138
>gi|184157980|ref|YP_001846319.1| transcriptional regulator [Acinetobacter baumannii ACICU]
gi|213157174|ref|YP_002319219.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057]
gi|215483548|ref|YP_002325767.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB307-0294]
gi|239501899|ref|ZP_04661209.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB900]
gi|260555142|ref|ZP_05827363.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter baumannii ATCC 19606]
gi|301345048|ref|ZP_07225789.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB056]
gi|301510365|ref|ZP_07235602.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB058]
gi|301595498|ref|ZP_07240506.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB059]
gi|332851744|ref|ZP_08433669.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
6013150]
gi|332865881|ref|ZP_08436661.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
6013113]
gi|332874439|ref|ZP_08442342.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
6014059]
gi|183209574|gb|ACC56972.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
gi|193077275|gb|ABO12061.2| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978]
gi|213056334|gb|ACJ41236.1| iscRSUA operon repressor [Acinetobacter baumannii AB0057]
gi|213987411|gb|ACJ57710.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB307-0294]
gi|260411684|gb|EEX04981.1| iron-sulfur cluster assembly transcription factor IscR
[Acinetobacter baumannii ATCC 19606]
gi|322508298|gb|ADX03752.1| iscR [Acinetobacter baumannii 1656-2]
gi|323517924|gb|ADX92305.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
gi|332729751|gb|EGJ61086.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
6013150]
gi|332734931|gb|EGJ66017.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
6013113]
gi|332737283|gb|EGJ68207.1| HTH-type transcriptional regulator IscR [Acinetobacter baumannii
6014059]
Length = 157
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + L+ A+ + +++IA IS +L ++ L + G+V +VRG
Sbjct: 1 MRLTTRGRYAVTALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+L++++A E+ C HK +C C + ++ +
Sbjct: 61 ANGGYHLARNADEITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIA 118
Query: 120 DVLTQYSIECLVRNRS 135
D L + ++ L+ +
Sbjct: 119 DYLAKITLANLISRDN 134
>gi|160932651|ref|ZP_02080041.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753]
gi|156868610|gb|EDO61982.1| hypothetical protein CLOLEP_01493 [Clostridium leptum DSM 753]
Length = 145
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A + + +IAE ISE +L I++ LVK G+V +RG
Sbjct: 1 MMVSTKGRYALRVMVELAARGLEEFVPLKEIAEHQEISEKYLEAIMKSLVKEGLVTGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL +P Q T+ ++K TE S C + CP C + ++
Sbjct: 61 KGGGYRLSKPPAQYTVGSILKVTEGSLAPVACLGQNAAPCPRAERCATYPMWKRLSQLID 120
Query: 120 DVLTQYSIECLV 131
D ++E L
Sbjct: 121 DFFEGITLEQLA 132
>gi|238028021|ref|YP_002912252.1| putative transcriptional regulator [Burkholderia glumae BGR1]
gi|237877215|gb|ACR29548.1| Predicted transcriptional regulator [Burkholderia glumae BGR1]
Length = 178
Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYNLARRAGDVTVADIIIAVDEPLDATQCGGKGTCEGTKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRAKE 141
>gi|283852450|ref|ZP_06369719.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
gi|283572188|gb|EFC20179.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
Length = 150
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++ Y +R L A P IA++ I + FL IL L + G V++ RG
Sbjct: 1 MAVTQKCQYALRALFELARRKGQGPVPAGGIADSQAIPKRFLEVILHQLRQGGFVDSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L RPA +T+ +V++ + +C DCPL G C + A A
Sbjct: 61 KEGGFYLARPAASVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGRCVFRGLWDDARAAL 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
V ++E LV ++
Sbjct: 121 VQVYDTRTLEDLVEEERRLE 140
>gi|33152205|ref|NP_873558.1| hypothetical protein HD1080 [Haemophilus ducreyi 35000HP]
gi|33148427|gb|AAP95947.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 150
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y + ++ A+H P ++ I+E IS +L ++ L + GIV +VRG
Sbjct: 1 MKLTSRGRYAVTAILDIALHGKSLPVSLADISERQAISLSYLEQLFAQLRREGIVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + +I++ V+ A ES V +C + +C C + + +
Sbjct: 61 PGGGYQLGKSPAEISVGMVISAVSESLDVTKCKGNG--NCSKNSQCLTHHLWERLEDQIG 118
Query: 120 DVLTQYSIECLVRN 133
L ++ L
Sbjct: 119 VFLNTITLAELAEE 132
>gi|134296308|ref|YP_001120043.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
vietnamiensis G4]
gi|134139465|gb|ABO55208.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
vietnamiensis G4]
Length = 179
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNA 117
GG L R A +T+ D++ A +E +C D G C +
Sbjct: 61 PGGGYNLARRAQDVTVADIIIAVDEPLDATQCGGKGACDGSKQPDGHCMTHELWSTLNQK 120
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 MVEYLDSVSLQDLVDQQRARE 141
>gi|284006761|emb|CBA72019.1| iron-sulfur cluster transcriptional regulator [Arsenophonus
nasoniae]
Length = 164
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSKTGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I I V+ A +ES C + C C ++ R +
Sbjct: 61 PGGGYLLGRDAKTIFIAQVISAVDESVDATRCHGR-REGCQGGERCLTHALWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRS 135
L+ S+E LV N+
Sbjct: 120 SFLSNISLEELVNNQE 135
>gi|323140322|ref|ZP_08075254.1| putative HTH-type transcriptional regulator IscR
[Phascolarctobacterium sp. YIT 12067]
gi|322415180|gb|EFY05967.1| putative HTH-type transcriptional regulator IscR
[Phascolarctobacterium sp. YIT 12067]
Length = 144
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ AI H + +A+ IS+ +L +I+ L KAG V++ RG
Sbjct: 1 MKISTKGRYALRLMLDLAINHTGSYIPLKTVAQRQNISDKYLEQIIHQLSKAGFVQSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL D+ T+ ++++ E S C K C SC + +K A
Sbjct: 61 AQGGYRLAHTPDEYTVGEILRTVEGSLAPVSCL-DCKTPCDQFDSCITIGLYKKIQQAID 119
Query: 120 DVLTQYSIECLVRNRS 135
V+ ++ ++ +
Sbjct: 120 GVVDHTTLHDMISDYR 135
>gi|237729111|ref|ZP_04559592.1| transcriptional repressor NsrR [Citrobacter sp. 30_2]
gi|226908840|gb|EEH94758.1| transcriptional repressor NsrR [Citrobacter sp. 30_2]
Length = 141
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V +RG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPAKDIGIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEKNQPLYKLL 138
>gi|289208246|ref|YP_003460312.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thioalkalivibrio sp. K90mix]
gi|288943877|gb|ADC71576.1| transcriptional regulator, BadM/Rrf2 family [Thioalkalivibrio sp.
K90mix]
Length = 143
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 73/143 (51%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD+ +RVLMY + D ++ I+E I L KI+ L + G + T RG
Sbjct: 1 MQLTRFTDFSLRVLMYLTVQPDDQRVTVTDISERFGIPRNHLVKIVHQLGQKGYLITRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L R + I I VV+ E + V +C CP++ C L VL A +AF
Sbjct: 61 KGGGISLARAPESINIGAVVRDMEPNLKVVDC---ESPMCPILPGCQLRGVLDDARDAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL QY++ + ++ ++ +
Sbjct: 118 AVLDQYTVRDVTQSPEHLRSLLR 140
>gi|299538188|ref|ZP_07051473.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1]
gi|298726390|gb|EFI66980.1| HTH-type transcriptional regulator [Lysinibacillus fusiformis ZC1]
Length = 145
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + + I +I++A IS+ L K+ L G +ET+RG
Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+
Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+VL QY+++ + ++ + +
Sbjct: 121 NVLDQYTLDDFLHSKEKLMALL 142
>gi|196233877|ref|ZP_03132715.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
Ellin428]
gi|196222071|gb|EDY16603.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
Ellin428]
Length = 153
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 76/143 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+L+Y H+ ++A+A IS L K+ + L KAG + RG
Sbjct: 1 MQLTTHSDYALRLLIYLTSHSTRKVSTREVADAYGISLNHLTKVAKSLTKAGWLLAARGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + + ++V+ TE + VAECF + CP+ C L +L +A AFFD
Sbjct: 61 GGGLTLAPHTREARVGEIVRYTEYTCDVAECFDAKANTCPITSVCRLKPLLYRAQKAFFD 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL +IE + RN + IF +
Sbjct: 121 VLDTATIEDIARNPGELNAIFES 143
>gi|315925094|ref|ZP_07921311.1| iron-sulfur cluster assembly transcription regulator IscR
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621993|gb|EFV01957.1| iron-sulfur cluster assembly transcription regulator IscR
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 145
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A H D + IA IS+ +L +I+ + I+ T RG
Sbjct: 1 MKISTKGRYALRMMLDLAYHQDEGYIALKDIARRQNISKKYLEQIVSLMRGPDILATSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG RL RP T+ ++++ TE S C CP C V +
Sbjct: 61 YRGGYRLARPPRDYTVGEILRLTEGSLAPVACLEEGADKCPRAAGCETLPVWQGLYTRIT 120
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ +
Sbjct: 121 DYLDSLTLQDIIDHTRE 137
>gi|332528393|ref|ZP_08404387.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella
gracilis ATCC 19624]
gi|332042156|gb|EGI78488.1| transcriptional regulator, BadM/Rrf2 family protein [Hylemonella
gracilis ATCC 19624]
Length = 178
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ ++ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +T+ D++ + +E +C G C +
Sbjct: 61 PGGGYTLARKAADVTVADIILSVDEPIDATQCGGKENCQGGDGGRCMTHELWSALNTRMV 120
Query: 120 DVLTQYSIECLVRNR 134
+ L +++ LV +
Sbjct: 121 EFLDSVTLQKLVDEQ 135
>gi|288958849|ref|YP_003449190.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
gi|288911157|dbj|BAI72646.1| HTH-type transcriptional regulator [Azospirillum sp. B510]
Length = 158
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A P ++ IAE IS +L ++ L K G+V++VRG
Sbjct: 1 MRLSTKGRYAVMAMVDLAATSQGSPVALADIAERQEISLSYLEQLFAKLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
GG L PAD + D++ A +E C C C + + N
Sbjct: 61 PGGGYLLAHPADATRVSDIILAVDEPIRTTRCANGTPQGCRTNRSRCLTHDLWEELGNQI 120
Query: 119 FDVLTQYSIECLVRNR 134
L+ ++ +V R
Sbjct: 121 HMYLSSVTVADVVERR 136
>gi|163802461|ref|ZP_02196354.1| hypothetical protein 1103602000590_AND4_19427 [Vibrio sp. AND4]
gi|159173762|gb|EDP58577.1| hypothetical protein AND4_19427 [Vibrio sp. AND4]
Length = 168
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C K DC C ++ R +
Sbjct: 61 PGGGYRLGADAHSIAIGTVIAAVDESIDATKC--QGKGDCQGGIRCLTHTLWRDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 119 DFLNNITLGELMTDNEVLE 137
>gi|281355327|ref|ZP_06241821.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
ATCC BAA-548]
gi|281318207|gb|EFB02227.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
ATCC BAA-548]
Length = 148
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 79/137 (57%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R+L+ A++ ++ P I I+E+ ISE ++ +++ L KAG+V+++RG
Sbjct: 1 MKISTKGRYGLRILLDLALNDSEKPRMIRDISESQHISEKYISRLIIELRKAGMVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG R+ R +IT+LDVV+ E + +C + + CP + SC + + N
Sbjct: 61 SKGGYRISREPKEITLLDVVEVMEGPVSIVDCVS-ARDCCPRIASCVTREIWTELNNQIR 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L + +++ ++ +
Sbjct: 120 EALQKITLQEIIDRYRA 136
>gi|104780228|ref|YP_606726.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
entomophila L48]
gi|95109215|emb|CAK13912.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
entomophila L48]
Length = 163
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + I + V+ A ES C DC +C +
Sbjct: 61 PGGGYQLSRGMETIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVMRRE 134
>gi|313114322|ref|ZP_07799857.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310623377|gb|EFQ06797.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 143
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ + H ++ + +IA ISE +L IL+ LV+ G +E +RG
Sbjct: 1 MIVSTKGRYALRVMIDLSEHQSEKYVPLKEIAARQEISEKYLENILKVLVQNGFLEGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R DQ T+ +++ TE S C + C + +C + + +
Sbjct: 61 KGGGYRLTRSPDQYTVGEILMLTEGSLAPVSCLTPNATPCSRMANCRTYEMWKGLDDLIS 120
Query: 120 DVLTQYSIECLVR 132
+ ++ L R
Sbjct: 121 NYFGNITLADLAR 133
>gi|153838057|ref|ZP_01990724.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810]
gi|308094348|ref|ZP_05888684.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
AN-5034]
gi|308095615|ref|ZP_05907096.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
Peru-466]
gi|308125639|ref|ZP_05776393.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
K5030]
gi|149748524|gb|EDM59383.1| Rrf2 family protein [Vibrio parahaemolyticus AQ3810]
gi|308086941|gb|EFO36636.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
Peru-466]
gi|308092986|gb|EFO42681.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
AN-5034]
gi|308113048|gb|EFO50588.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
K5030]
Length = 174
Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 7 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C K DC C ++ R +
Sbjct: 67 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 124
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 125 DFLNNITLGELMTDNEVLE 143
>gi|217970609|ref|YP_002355843.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thauera sp. MZ1T]
gi|217507936|gb|ACK54947.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
Length = 160
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A D P ++ IAE IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAARQGDGPVTLAGIAERQSISLSYLEQLFGKLRRHKLVNSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R D+IT+ D++ A +E +C K +C C + +
Sbjct: 61 PGGGYRLARAMDEITVADIIIAVDEPMDATQC--GGKENCHDDHVCMTHHLWSNLNQRIY 118
Query: 120 DVLTQYSIECLVRNR 134
L S+E LV+++
Sbjct: 119 AYLDSVSLEALVKHQ 133
>gi|319943706|ref|ZP_08017987.1| iron-sulfur cluster assembly transcription regulator IscR
[Lautropia mirabilis ATCC 51599]
gi|319742939|gb|EFV95345.1| iron-sulfur cluster assembly transcription regulator IscR
[Lautropia mirabilis ATCC 51599]
Length = 172
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALREHNGPVTLAGISQRQKISLSYLEQLFGKLRRHQLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP+ I + ++ A +E +C K DC G C +
Sbjct: 61 PGGGYSLARPSQDINVSSIIFAVDEPLDATQC--GGKQDCFEDGPCMTHELWTSLNKRMI 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L S++ LV + ++
Sbjct: 119 DYLDSVSLQDLVEQQRMREQ 138
>gi|313895892|ref|ZP_07829446.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320530715|ref|ZP_08031759.1| Rrf2 family protein [Selenomonas artemidis F0399]
gi|312975317|gb|EFR40778.1| putative HTH-type transcriptional regulator IscR [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320137002|gb|EFW28940.1| Rrf2 family protein [Selenomonas artemidis F0399]
Length = 147
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+H + I IA++ ISE +L +++ PL +AG+VE+VRG
Sbjct: 1 MKLSTKGRYSVTALYELALHYGEGVVPIKTIAKSQGISENYLEQLMLPLRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
+GG L RP ++TI +++ A E + +C + C G+C + +
Sbjct: 61 AQGGYTLSRPPAEVTIGEIITAVEGPIALVDCLLTDVDAGDQSCVHAGACATRQIWEEVC 120
Query: 116 NAFFDVLTQYSIECLVR 132
A VL S+ L+R
Sbjct: 121 AAINSVLNNISLAHLLR 137
>gi|16763186|ref|NP_458803.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|29144665|ref|NP_808007.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|213052276|ref|ZP_03345154.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. E00-7866]
gi|213418156|ref|ZP_03351222.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. E01-6750]
gi|213428666|ref|ZP_03361416.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. E02-1180]
gi|213582913|ref|ZP_03364739.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
gi|213648975|ref|ZP_03379028.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|213852964|ref|ZP_03382496.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. M223]
gi|289811153|ref|ZP_06541782.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
gi|289829975|ref|ZP_06547426.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|81512227|sp|Q8Z183|NSRR_SALTI RecName: Full=HTH-type transcriptional repressor nsrR
gi|25303603|pir||AG1049 conserved hypothetical protein yjeB [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505494|emb|CAD06844.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29140304|gb|AAO71867.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 141
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPANTICIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 KELDNYTLADLVEENQPLYKLL 138
>gi|221133857|ref|ZP_03560162.1| transcriptional regulator, BadM/Rrf2 family protein [Glaciecola sp.
HTCC2999]
Length = 160
Score = 128 bits (321), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P + I+ IS +L ++ L K +VE++RG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSQQGPVSLYDISMRQEISLSYLEQLFSKLRKQHLVESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PA++I + +V+ A ES +C + K DC C ++ + +
Sbjct: 61 PGGGYRLGKPANEIAVGEVIAAVNESIDATKC--NGKADCQGGEKCLTHNLWQDLSDRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+ +
Sbjct: 119 KFLDNITLGELMAKQD 134
>gi|323702187|ref|ZP_08113854.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
nigrificans DSM 574]
gi|323532874|gb|EGB22746.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
nigrificans DSM 574]
Length = 147
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A+H P + +AE +SE +L +++ L KAG+V+++RG
Sbjct: 1 MRLSTKGHYGLKAMFDLAMHYGAEPIPLKLVAERQSLSEHYLEQLIAVLRKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG L RP +I + DV++A E +C + + C V C + K ++
Sbjct: 61 AQGGYILARPPAEIKVGDVIRALEGPIAPLDCVSEQEPTLCEKVDYCISRDIWAKVRDSI 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+VL ++E + R
Sbjct: 121 AEVLDSITLEDMCREAEK 138
>gi|85712744|ref|ZP_01043789.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
[Idiomarina baltica OS145]
gi|85693476|gb|EAQ31429.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
[Idiomarina baltica OS145]
Length = 155
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+ P ++ I++ IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVAMFAKQAPVPLADISDRQGISLSYLEQLFARLRKRGLVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R AD I++ V+ A +ES +C K +C C S+ +
Sbjct: 61 PGGGYRLGRDADSISVGAVIDAVDESIDATKC--QGKGNCHNGEQCLTHSLWEGLSDRIA 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+ +
Sbjct: 119 QFLDGITLAELMATKE 134
>gi|253689808|ref|YP_003018998.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
carotovorum subsp. carotovorum PC1]
gi|259514610|sp|C6DE26|NSRR_PECCP RecName: Full=HTH-type transcriptional repressor nsrR
gi|251756386|gb|ACT14462.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
carotovorum subsp. carotovorum PC1]
Length = 141
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGKPAETIRIGDVVREL-EPLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ +V+ + K+
Sbjct: 117 QELDQYTLADMVKENPPLYKLL 138
>gi|307543983|ref|YP_003896462.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Halomonas elongata DSM 2581]
gi|307216007|emb|CBV41277.1| transcriptional regulator, BadM/Rrf2 family [Halomonas elongata DSM
2581]
Length = 183
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H D P ++ IA+ IS +L ++ L + G+V++VRG
Sbjct: 29 MRLTTKGRYAVTAMLDLAMHADEGPICLADIAKRQEISLSYLEQLFARLRRRGLVDSVRG 88
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + I++ V+ A +ES C DC +C + +
Sbjct: 89 PGGGYLLTLSPEAISVAQVIDAVDESVDATRC--GGMSDCQQGDTCLTHHLWNELSEQIH 146
Query: 120 DVLTQYSIECLVRN 133
L ++ L R
Sbjct: 147 GFLDGVTLGQLARR 160
>gi|254449219|ref|ZP_05062668.1| iron-sulfur cluster assembly transcription factor IscR [gamma
proteobacterium HTCC5015]
gi|198261196|gb|EDY85492.1| iron-sulfur cluster assembly transcription factor IscR [gamma
proteobacterium HTCC5015]
Length = 158
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ IAE IS +L ++ L K G+V + RG
Sbjct: 1 MKLTTKGRYAVTAMLDLALHCEQGPVALADIAERQAISLSYLEQLFGRLRKRGLVSSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A I++ V+ A +ES C C C +
Sbjct: 61 PGGGYALNAEAGAISVSAVIDAVDESVDATSC--GGASSCQGSIRCLTHDLWTDLSQQIQ 118
Query: 120 DVLTQYSIECLVRNR 134
L S++ LV R
Sbjct: 119 GFLDSISLQDLVDRR 133
>gi|330817194|ref|YP_004360899.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
gladioli BSR3]
gi|327369587|gb|AEA60943.1| Transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
gladioli BSR3]
Length = 156
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 5/147 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ ++ + I +I++A IS+ L K++Q L + G V+TVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRSEGLSTIQEISDAYGISKNHLMKVVQRLGELGWVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKAL 115
GG+R+ + ++TI +VV+ATE F + CF C + C L VL A
Sbjct: 61 NGGLRINANSGRLTIGEVVRATESDFALVGCFGGEGQGVEHRSCVIEPHCRLKGVLYAAR 120
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
AFF L +++I L R S +
Sbjct: 121 EAFFSELDRHTIAELSRPASPLAAALG 147
>gi|300114135|ref|YP_003760710.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
C-113]
gi|299540072|gb|ADJ28389.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
C-113]
Length = 166
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I+ IS +L ++ L K G+V + RG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHYEQGPISLADISRRQGISLSYLEQLFARLRKKGLVGSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A +I+I+DV+ A +E+ C +C C + +
Sbjct: 61 PGGGYRLSREAGKISIIDVITAVDENMDATRC--GGLKNCQENQRCLTHELWEDLSRQIY 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L ++ L++ R I+++
Sbjct: 119 KFLAHITLGELIQ-RDDIQEV 138
>gi|206900600|ref|YP_002250996.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
gi|206739703|gb|ACI18761.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
Length = 138
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ R+ YG+R L+Y A + D P + +IAEA I +L +I++ L + V
Sbjct: 1 MKLSTRSRYGLRALIYIAKNQKEDSPVSVRKIAEAEEIPLRYLERIMRILSQKNYVRAEV 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L + I ILDVV+A E + +C K C + SC + + +
Sbjct: 61 GAEGGYYLNISPENIRILDVVEALEGRINLVDCLHGVK--CKRMPSCPTRPLWIEMTKSL 118
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L +Y++ ++ IK
Sbjct: 119 KETLAKYTLADFLKEEEKIK 138
>gi|332526731|ref|ZP_08402833.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
benzoatilyticus JA2]
gi|332111134|gb|EGJ11166.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
benzoatilyticus JA2]
Length = 177
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRSHSGPVALAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD+IT+ D++ A +E C G C + N
Sbjct: 61 PGGGYSLGRGADEITVADIIVAVDEPIDATGCGGKENCHGDDGGRCMTHDLWASLNNKMI 120
Query: 120 DVLTQYSIECLVRNR 134
+ L S++ LV +
Sbjct: 121 EYLDSISLKKLVDEQ 135
>gi|302877884|ref|YP_003846448.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
gi|302580673|gb|ADL54684.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
Length = 151
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ P ++ I+E IS +L ++ L ++ +VE+VRG
Sbjct: 1 MRLTTKGRFAVTAMVDLAMNGGRGPVTLASISERQKISLSYLEQLFGKLRRSNLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +I I ++V A +E C DC C ++ +
Sbjct: 61 PGGGYYLAKTATKIKIAEIVVAVDEPLDATYCAEKG--DCRDGQPCLTHNLWMGLNERIY 118
Query: 120 DVLTQYSIECLVRNRSS 136
L +++ LV +S
Sbjct: 119 SYLDSINLQQLVEGQSK 135
>gi|148265924|ref|YP_001232630.1| BadM/Rrf2 family transcriptional regulator [Geobacter
uraniireducens Rf4]
gi|146399424|gb|ABQ28057.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
uraniireducens Rf4]
Length = 154
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A ++ P +I I+ IS +L +I Q L + GI+++ RG
Sbjct: 1 MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQEISPRYLEQIFQSLKRKGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117
+GG L + ++IT+ D+++ATE + +C S K +C GSC +V +A
Sbjct: 61 PQGGYCLAKNPEEITVKDIIQATEGDTMLVDCAGSKKKKGECAFDGSCVTQTVWEEANAK 120
Query: 118 FFDVLTQYSIECLVRNRSSI 137
++ +++ L ++
Sbjct: 121 LNELFASITLKTLCERGQAM 140
>gi|307132423|ref|YP_003884439.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937]
gi|306529952|gb|ADM99882.1| DNA-binding transcriptional regulator [Dickeya dadantii 3937]
Length = 141
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R I I DVV+ E + C C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGRDPSTIRIGDVVREL-EPLSLVNCSKEF---CHITSACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V + K+
Sbjct: 117 KELDNYTLADMVEENPPLYKLL 138
>gi|242280449|ref|YP_002992578.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
salexigens DSM 2638]
gi|242123343|gb|ACS81039.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
salexigens DSM 2638]
Length = 143
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+++ A H P RIS IA +S +L K+++ L KAG + + RG
Sbjct: 1 MRLTTRSRYGTRMILDIATHCTAGPVRISDIASRQGLSTKYLEKLIRELKKAGFIASKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + IT+ VV++ E + EC + + C + +C V KA A +
Sbjct: 61 PGGGHSLAMAPEDITVGAVVRSLEGDAGLVECLDNDDL-CKRIDNCPTREVWIKASKAMY 119
Query: 120 DVLTQYSIECLVRN 133
L + SI L++
Sbjct: 120 AALDEISIADLLKE 133
>gi|70732290|ref|YP_262046.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
fluorescens Pf-5]
gi|68346589|gb|AAY94195.1| iron-sulfur cluster assembly transcription factor IscR [Pseudomonas
fluorescens Pf-5]
Length = 163
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I+E IS +L ++ L ++ +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + V+ A ES +C DC +C +
Sbjct: 61 PGGGYQLSRDMQGIQVAQVIDAVNESVDATKCQGLG--DCHAGDTCLTHHLWCDLSLQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L+ S+ LV R
Sbjct: 119 EFLSGISLADLVTRRE 134
>gi|153835382|ref|ZP_01988049.1| Rrf2 family protein [Vibrio harveyi HY01]
gi|308126079|ref|ZP_05907695.2| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
AQ4037]
gi|148868104|gb|EDL67270.1| Rrf2 family protein [Vibrio harveyi HY01]
gi|308106690|gb|EFO44230.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
AQ4037]
Length = 174
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 7 MKLTSKGRYAVTAMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL A I I V+ A +ES +C K DC C ++ R +
Sbjct: 67 PGGGYRLGADAHSIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRIS 124
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+ + ++
Sbjct: 125 DFLNNITLGELMTDNEVLE 143
>gi|117620851|ref|YP_855204.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117562258|gb|ABK39206.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 155
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG
Sbjct: 1 MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+R+ + + I V++A E + +C C +V C L + L++A+NAF
Sbjct: 61 KNGGIRMACAPETVNIGQVIRALEGNLDGIDC---GSPACHIVSVCLLKNALKEAMNAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
V+ Y+++ L+ NR ++K+F
Sbjct: 118 AVMDSYTLQDLLANRDELQKVFG 140
>gi|251788403|ref|YP_003003124.1| transcriptional repressor NsrR [Dickeya zeae Ech1591]
gi|247537024|gb|ACT05645.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
Length = 141
Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R I I DVV+ E + C C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGRDPSTIRIGDVVREL-EPLSLVNCSKEF---CHITPACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V + K+
Sbjct: 117 TELDNYTLADMVEENPPLYKLL 138
>gi|194445441|ref|YP_002043622.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|195873714|ref|ZP_02698652.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197265870|ref|ZP_03165944.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|198243076|ref|YP_002218251.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|205358148|ref|ZP_02576074.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205360093|ref|ZP_02834507.2| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224586207|ref|YP_002640006.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|62130446|gb|AAX68149.1| putative negative regulator [Salmonella enterica subsp. enterica
serovar Choleraesuis str. SC-B67]
gi|194404104|gb|ACF64326.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|195632977|gb|EDX51431.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|197244125|gb|EDY26745.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Saintpaul str. SARA23]
gi|197937592|gb|ACH74925.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Dublin str. CT_02021853]
gi|205327229|gb|EDZ13993.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:- str. CVM23701]
gi|205341100|gb|EDZ27864.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|224470735|gb|ACN48565.1| putative negative regulator [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|312915465|dbj|BAJ39439.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
gi|321222667|gb|EFX47739.1| Nitrite-sensitive transcriptional repressor NsrR [Salmonella
enterica subsp. enterica serovar Typhimurium str.
TN061786]
gi|322717315|gb|EFZ08886.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Choleraesuis str. A50]
gi|323132705|gb|ADX20135.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
Length = 162
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG+
Sbjct: 23 QLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGK 82
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 83 NGGIRLGKPANTICIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLK 138
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 139 ELDNYTLADLVEENQPLYKLL 159
>gi|315125526|ref|YP_004067529.1| transcriptional repressor of the iscRSUA operon, involved in
assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913]
gi|315014039|gb|ADT67377.1| transcriptional repressor of the iscRSUA operon, involved in
assembly of Fe-S clusters [Pseudoalteromonas sp. SM9913]
Length = 163
Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H + P ++ I++ IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHANIGPVALADISQRQEISLSYLEQLFARLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD I++ DV+ A +ES C C C ++
Sbjct: 61 PGGGYLLGREADVISVGDVINAVDESVDATRC-QRSNTGCQSGMRCLTHTLWSDLSARIE 119
Query: 120 DVLTQYSIECLVRNRS 135
+ L ++ LV
Sbjct: 120 EFLNNITLAELVEKSD 135
>gi|293393207|ref|ZP_06637522.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582]
gi|291424353|gb|EFE97567.1| transcriptional repressor NsrR [Serratia odorifera DSM 4582]
Length = 141
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + D IS++ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPKDKMTSISEVTEVYGVSRNHMVKIINQLSRIGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+A E + C C + +C L VL++ + F
Sbjct: 61 KNGGIRLGQPAASIRIGDVVRAL-EPLSLVNCSGDF---CHITPACRLKQVLQQGVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V + + + K+
Sbjct: 117 AELDNYTLADMVEDNAPLYKLL 138
>gi|238750077|ref|ZP_04611580.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC
43380]
gi|238711621|gb|EEQ03836.1| HTH-type transcriptional repressor nsrR [Yersinia rohdei ATCC
43380]
Length = 141
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA++I I DVV+ E + C + C + +C L S L +A+ +F
Sbjct: 61 KNGGIRLGKPANEIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKSALNQAVKSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
D L Y++ +V++ + + K+
Sbjct: 117 DELDNYTLADMVQDNTPLYKLL 138
>gi|145297732|ref|YP_001140573.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142850504|gb|ABO88825.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 157
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 82/143 (57%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG
Sbjct: 1 MRLTSYTDFGLRALLYLATLPQGELSSVAKVSALYDVSRNHMVKVVNQLVKLGYLQSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+R+ + + I V++A E + +C + C +V C L S L++A+NAF
Sbjct: 61 KNGGIRMACTPETVNIGQVIRALEGNLDGIDCNSPV---CHIVSVCLLKSALKEAMNAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
V+ Y+++ L+ NR ++K+F
Sbjct: 118 AVMDSYTLQDLLANRDELQKVFG 140
>gi|303249012|ref|ZP_07335257.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
gi|302489598|gb|EFL49538.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
Length = 145
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG+R+L+ A+H P RI IA+ IS +L ++++ L KAG + + RG
Sbjct: 1 MQLTTRSRYGLRMLLDIALHGGERPVRIQDIAKRRNISVKYLEQLIRALKKAGFINSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L P ++I + DVV+A E + EC + C + G C + +A + F
Sbjct: 61 PRGGHVLAMPPEEIRVGDVVRALESRPELTECVGNP-ETCLIAGDCVTRRIWARATESLF 119
Query: 120 DVLTQYSIECLVRNRSS 136
L I ++
Sbjct: 120 RELDAIRIADMLDQAQK 136
>gi|52842742|ref|YP_096541.1| hypothetical protein lpg2534 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|52629853|gb|AAU28594.1| hypothetical protein lpg2534 [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
Length = 143
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+
Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + + I + ++ E +F + CF K +C + +C L SVL +A AF
Sbjct: 60 NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
+L QY++ ++ N S + +
Sbjct: 120 ILEQYTLADVLHNPSELSALLR 141
>gi|256823249|ref|YP_003147212.1| BadM/Rrf2 family transcriptional regulator [Kangiella koreensis DSM
16069]
gi|256796788|gb|ACV27444.1| transcriptional regulator, BadM/Rrf2 family [Kangiella koreensis
DSM 16069]
Length = 148
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL++ A+ D + I +I+++ IS L K++ L K G +ETVRG+
Sbjct: 1 MHITRYTDYSLRVLLFLALEKDRLSTIQEISDSYNISSNHLMKVVHALNKKGYIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + I I +V+ E + ECF+ C + CGL +VL +AL F
Sbjct: 61 NGGMRLRMDPEDIRIGVLVREMEPDMSLVECFSPDNK-CVITPVCGLKAVLGEALKNFLA 119
Query: 121 VLTQYSIECLV--RNRSSIKKIF 141
L +Y++ ++ + + ++
Sbjct: 120 TLDKYTLADMLPQEYKPQLARLL 142
>gi|15804767|ref|NP_290808.1| transcriptional repressor NsrR [Escherichia coli O157:H7 EDL933]
gi|15834408|ref|NP_313181.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
Sakai]
gi|16132000|ref|NP_418599.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli
str. K-12 substr. MG1655]
gi|24115533|ref|NP_710043.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 301]
gi|26251070|ref|NP_757110.1| transcriptional repressor NsrR [Escherichia coli CFT073]
gi|30065550|ref|NP_839721.1| transcriptional repressor NsrR [Shigella flexneri 2a str. 2457T]
gi|74314663|ref|YP_313082.1| transcriptional repressor NsrR [Shigella sonnei Ss046]
gi|82546581|ref|YP_410528.1| transcriptional repressor NsrR [Shigella boydii Sb227]
gi|82779440|ref|YP_405789.1| transcriptional repressor NsrR [Shigella dysenteriae Sd197]
gi|89110898|ref|AP_004678.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K-12 substr. W3110]
gi|91213727|ref|YP_543713.1| transcriptional repressor NsrR [Escherichia coli UTI89]
gi|110644535|ref|YP_672265.1| transcriptional repressor NsrR [Escherichia coli 536]
gi|110808096|ref|YP_691616.1| transcriptional repressor NsrR [Shigella flexneri 5 str. 8401]
gi|117626524|ref|YP_859847.1| transcriptional repressor NsrR [Escherichia coli APEC O1]
gi|168760419|ref|ZP_02785426.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4501]
gi|168784814|ref|ZP_02809821.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC869]
gi|168801832|ref|ZP_02826839.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC508]
gi|170083624|ref|YP_001732944.1| DNA-binding transcriptional regulator [Escherichia coli str. K-12
substr. DH10B]
gi|170680746|ref|YP_001746573.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5]
gi|191165643|ref|ZP_03027483.1| transcriptional repressor NsrR [Escherichia coli B7A]
gi|191170792|ref|ZP_03032344.1| transcriptional repressor NsrR [Escherichia coli F11]
gi|191174524|ref|ZP_03036022.1| transcriptional repressor NsrR [Escherichia coli F11]
gi|193066007|ref|ZP_03047065.1| transcriptional repressor NsrR [Escherichia coli E22]
gi|193070883|ref|ZP_03051815.1| transcriptional repressor NsrR [Escherichia coli E110019]
gi|194426693|ref|ZP_03059247.1| transcriptional repressor NsrR [Escherichia coli B171]
gi|194434604|ref|ZP_03066861.1| transcriptional repressor NsrR [Shigella dysenteriae 1012]
gi|215489522|ref|YP_002331953.1| transcriptional repressor NsrR [Escherichia coli O127:H6 str.
E2348/69]
gi|217325196|ref|ZP_03441280.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
TW14588]
gi|218561337|ref|YP_002394250.1| transcriptional repressor NsrR [Escherichia coli S88]
gi|218692512|ref|YP_002400724.1| transcriptional repressor NsrR [Escherichia coli ED1a]
gi|218697927|ref|YP_002405594.1| transcriptional repressor NsrR [Escherichia coli 55989]
gi|218702875|ref|YP_002410504.1| transcriptional repressor NsrR [Escherichia coli IAI39]
gi|218707789|ref|YP_002415308.1| transcriptional repressor NsrR [Escherichia coli UMN026]
gi|227886779|ref|ZP_04004584.1| transcriptional repressor NsrR [Escherichia coli 83972]
gi|238903285|ref|YP_002929081.1| putative DNA-binding transcriptional regulator [Escherichia coli
BW2952]
gi|256019823|ref|ZP_05433688.1| transcriptional repressor NsrR [Shigella sp. D9]
gi|256025113|ref|ZP_05438978.1| transcriptional repressor NsrR [Escherichia sp. 4_1_40B]
gi|260847008|ref|YP_003224786.1| putative DNA-binding transcriptional regulator [Escherichia coli
O103:H2 str. 12009]
gi|260858331|ref|YP_003232222.1| putative DNA-binding transcriptional regulator [Escherichia coli
O26:H11 str. 11368]
gi|260870914|ref|YP_003237316.1| putative DNA-binding transcriptional regulator [Escherichia coli
O111:H- str. 11128]
gi|261225298|ref|ZP_05939579.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255450|ref|ZP_05947983.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
FRIK966]
gi|291285590|ref|YP_003502408.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
CB9615]
gi|293402805|ref|ZP_06646902.1| transcriptional repressor NsrR [Escherichia coli FVEC1412]
gi|293407905|ref|ZP_06651745.1| transcriptional repressor NsrR [Escherichia coli B354]
gi|293417681|ref|ZP_06660303.1| transcriptional repressor NsrR [Escherichia coli B185]
gi|293476489|ref|ZP_06664897.1| transcriptional repressor NsrR [Escherichia coli B088]
gi|298378335|ref|ZP_06988219.1| transcriptional repressor NsrR [Escherichia coli FVEC1302]
gi|301028000|ref|ZP_07191284.1| Rrf2 family protein [Escherichia coli MS 196-1]
gi|306815607|ref|ZP_07449756.1| transcriptional repressor NsrR [Escherichia coli NC101]
gi|307140872|ref|ZP_07500228.1| transcriptional repressor NsrR [Escherichia coli H736]
gi|309787682|ref|ZP_07682293.1| rrf2 family protein [Shigella dysenteriae 1617]
gi|312974014|ref|ZP_07788185.1| rrf2 family protein [Escherichia coli 1827-70]
gi|331644925|ref|ZP_08346042.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736]
gi|331650303|ref|ZP_08351375.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605]
gi|331656006|ref|ZP_08356994.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718]
gi|331660753|ref|ZP_08361685.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206]
gi|331665842|ref|ZP_08366736.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143]
gi|331671083|ref|ZP_08371916.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271]
gi|331671327|ref|ZP_08372125.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280]
gi|331680308|ref|ZP_08380967.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591]
gi|331681197|ref|ZP_08381834.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299]
gi|84028053|sp|P0AF65|NSRR_ECO57 RecName: Full=HTH-type transcriptional repressor nsrR
gi|84028054|sp|P0AF64|NSRR_ECOL6 RecName: Full=HTH-type transcriptional repressor nsrR
gi|84028055|sp|P0AF63|NSRR_ECOLI RecName: Full=HTH-type transcriptional repressor nsrR
gi|84028056|sp|P0AF66|NSRR_SHIFL RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372258|sp|Q0T9L5|NSRR_ECOL5 RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372259|sp|Q1R382|NSRR_ECOUT RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372262|sp|Q31TA8|NSRR_SHIBS RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372263|sp|Q328F7|NSRR_SHIDS RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372264|sp|Q3YUG5|NSRR_SHISS RecName: Full=HTH-type transcriptional repressor nsrR
gi|122956960|sp|Q0SXA4|NSRR_SHIF8 RecName: Full=HTH-type transcriptional repressor nsrR
gi|189030884|sp|A1AJ83|NSRR_ECOK1 RecName: Full=HTH-type transcriptional repressor nsrR
gi|226736213|sp|B7MLI3|NSRR_ECO45 RecName: Full=HTH-type transcriptional repressor nsrR
gi|226736215|sp|B7NTN4|NSRR_ECO7I RecName: Full=HTH-type transcriptional repressor nsrR
gi|226736775|sp|B1XDS9|NSRR_ECODH RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737668|sp|B7NGB2|NSRR_ECOLU RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737670|sp|B1LQJ8|NSRR_ECOSM RecName: Full=HTH-type transcriptional repressor nsrR
gi|254768044|sp|B7UQI7|NSRR_ECO27 RecName: Full=HTH-type transcriptional repressor nsrR
gi|254768045|sp|B7LC37|NSRR_ECO55 RecName: Full=HTH-type transcriptional repressor nsrR
gi|254768046|sp|B7MSJ6|NSRR_ECO81 RecName: Full=HTH-type transcriptional repressor nsrR
gi|259514607|sp|C4ZR55|NSRR_ECOBW RecName: Full=HTH-type transcriptional repressor nsrR
gi|12519166|gb|AAG59374.1|AE005651_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26111502|gb|AAN83684.1|AE016771_195 Hypothetical protein yjeB [Escherichia coli CFT073]
gi|537019|gb|AAA97074.1| yjeB [Escherichia coli str. K-12 substr. MG1655]
gi|912442|dbj|BAA01776.1| ORF-1 [Shigella flexneri]
gi|1790621|gb|AAC77135.1| nitric oxide-sensitive repressor for NO regulon [Escherichia coli
str. K-12 substr. MG1655]
gi|13364631|dbj|BAB38577.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24054861|gb|AAN45750.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30043814|gb|AAP19533.1| hypothetical protein S4601 [Shigella flexneri 2a str. 2457T]
gi|73858140|gb|AAZ90847.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81243588|gb|ABB64298.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81247992|gb|ABB68700.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|85676929|dbj|BAE78179.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K12 substr. W3110]
gi|91075301|gb|ABE10182.1| hypothetical protein UTI89_C4778 [Escherichia coli UTI89]
gi|110346127|gb|ABG72364.1| putative transcriptional regulator YjeB [Escherichia coli 536]
gi|110617644|gb|ABF06311.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|115515648|gb|ABJ03723.1| conserved hypothetical protein [Escherichia coli APEC O1]
gi|169891459|gb|ACB05166.1| predicted DNA-binding transcriptional regulator [Escherichia coli
str. K-12 substr. DH10B]
gi|170518464|gb|ACB16642.1| transcriptional repressor NsrR [Escherichia coli SMS-3-5]
gi|189368884|gb|EDU87300.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4501]
gi|189374986|gb|EDU93402.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC869]
gi|189376056|gb|EDU94472.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC508]
gi|190904338|gb|EDV64047.1| transcriptional repressor NsrR [Escherichia coli B7A]
gi|190905204|gb|EDV64845.1| transcriptional repressor NsrR [Escherichia coli F11]
gi|190909016|gb|EDV68603.1| transcriptional repressor NsrR [Escherichia coli F11]
gi|192926330|gb|EDV80966.1| transcriptional repressor NsrR [Escherichia coli E22]
gi|192955829|gb|EDV86300.1| transcriptional repressor NsrR [Escherichia coli E110019]
gi|194415432|gb|EDX31700.1| transcriptional repressor NsrR [Escherichia coli B171]
gi|194417189|gb|EDX33301.1| transcriptional repressor NsrR [Shigella dysenteriae 1012]
gi|209750218|gb|ACI73416.1| hypothetical protein ECs5154 [Escherichia coli]
gi|209750220|gb|ACI73417.1| hypothetical protein ECs5154 [Escherichia coli]
gi|209750222|gb|ACI73418.1| hypothetical protein ECs5154 [Escherichia coli]
gi|209750224|gb|ACI73419.1| hypothetical protein ECs5154 [Escherichia coli]
gi|215267594|emb|CAS12049.1| predicted DNA-binding transcriptional regulator [Escherichia coli
O127:H6 str. E2348/69]
gi|217321417|gb|EEC29841.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
TW14588]
gi|218354659|emb|CAV01655.1| DNA-binding transcriptional regulator [Escherichia coli 55989]
gi|218368106|emb|CAR05913.1| DNA-binding transcriptional regulator [Escherichia coli S88]
gi|218372861|emb|CAR20741.1| DNA-binding transcriptional regulator [Escherichia coli IAI39]
gi|218430076|emb|CAR10921.1| DNA-binding transcriptional regulator [Escherichia coli ED1a]
gi|218434886|emb|CAR15824.1| DNA-binding transcriptional regulator [Escherichia coli UMN026]
gi|222035948|emb|CAP78693.1| HTH-type transcriptional repressor nsrR [Escherichia coli LF82]
gi|227836352|gb|EEJ46818.1| transcriptional repressor NsrR [Escherichia coli 83972]
gi|238862328|gb|ACR64326.1| predicted DNA-binding transcriptional regulator [Escherichia coli
BW2952]
gi|257756980|dbj|BAI28482.1| predicted DNA-binding transcriptional regulator [Escherichia coli
O26:H11 str. 11368]
gi|257762155|dbj|BAI33652.1| predicted DNA-binding transcriptional regulator [Escherichia coli
O103:H2 str. 12009]
gi|257767270|dbj|BAI38765.1| predicted DNA-binding transcriptional regulator [Escherichia coli
O111:H- str. 11128]
gi|260450995|gb|ACX41417.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1]
gi|281181274|dbj|BAI57604.1| conserved hypothetical protein [Escherichia coli SE15]
gi|281603640|gb|ADA76624.1| HTH-type transcriptional repressor nsrR [Shigella flexneri 2002017]
gi|284924360|emb|CBG37476.1| transcriptional repressor [Escherichia coli 042]
gi|290765463|gb|ADD59424.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
CB9615]
gi|291320942|gb|EFE60384.1| transcriptional repressor NsrR [Escherichia coli B088]
gi|291429720|gb|EFF02734.1| transcriptional repressor NsrR [Escherichia coli FVEC1412]
gi|291430399|gb|EFF03397.1| transcriptional repressor NsrR [Escherichia coli B185]
gi|291472156|gb|EFF14638.1| transcriptional repressor NsrR [Escherichia coli B354]
gi|294490746|gb|ADE89502.1| transcriptional repressor NsrR [Escherichia coli IHE3034]
gi|298280669|gb|EFI22170.1| transcriptional repressor NsrR [Escherichia coli FVEC1302]
gi|299878910|gb|EFI87121.1| Rrf2 family protein [Escherichia coli MS 196-1]
gi|305851269|gb|EFM51724.1| transcriptional repressor NsrR [Escherichia coli NC101]
gi|307556345|gb|ADN49120.1| putative transcriptional regulator YjeB [Escherichia coli ABU
83972]
gi|307629250|gb|ADN73554.1| transcriptional repressor NsrR [Escherichia coli UM146]
gi|308924432|gb|EFP69928.1| rrf2 family protein [Shigella dysenteriae 1617]
gi|310331548|gb|EFP98804.1| rrf2 family protein [Escherichia coli 1827-70]
gi|312948827|gb|ADR29654.1| transcriptional repressor NsrR [Escherichia coli O83:H1 str. NRG
857C]
gi|313646347|gb|EFS10809.1| rrf2 family protein [Shigella flexneri 2a str. 2457T]
gi|315138732|dbj|BAJ45891.1| transcriptional repressor NsrR [Escherichia coli DH1]
gi|315617591|gb|EFU98197.1| rrf2 family protein [Escherichia coli 3431]
gi|320180691|gb|EFW55618.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella boydii
ATCC 9905]
gi|320187056|gb|EFW61767.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella flexneri
CDC 796-83]
gi|320190690|gb|EFW65340.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
O157:H7 str. EC1212]
gi|320193558|gb|EFW68195.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
WV_060327]
gi|320200692|gb|EFW75278.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
EC4100B]
gi|320638936|gb|EFX08582.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
G5101]
gi|320644305|gb|EFX13370.1| transcriptional repressor NsrR [Escherichia coli O157:H- str.
493-89]
gi|320649623|gb|EFX18147.1| transcriptional repressor NsrR [Escherichia coli O157:H- str. H
2687]
gi|320655019|gb|EFX22980.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660526|gb|EFX27987.1| transcriptional repressor NsrR [Escherichia coli O55:H7 str. USDA
5905]
gi|320665795|gb|EFX32832.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
LSU-61]
gi|323156005|gb|EFZ42167.1| rrf2 family protein [Escherichia coli EPECa14]
gi|323161967|gb|EFZ47839.1| rrf2 family protein family protein [Escherichia coli E128010]
gi|323166661|gb|EFZ52419.1| rrf2 family protein [Shigella sonnei 53G]
gi|323176063|gb|EFZ61655.1| rrf2 family protein family protein [Escherichia coli 1180]
gi|323189943|gb|EFZ75221.1| rrf2 family protein family protein [Escherichia coli RN587/1]
gi|323935408|gb|EGB31752.1| transcriptional regulator [Escherichia coli E1520]
gi|323940097|gb|EGB36291.1| transcriptional regulator [Escherichia coli E482]
gi|323950753|gb|EGB46631.1| transcriptional regulator [Escherichia coli H252]
gi|323955465|gb|EGB51229.1| transcriptional regulator [Escherichia coli H263]
gi|323965564|gb|EGB61018.1| transcriptional regulator [Escherichia coli M863]
gi|323975481|gb|EGB70582.1| transcriptional regulator [Escherichia coli TW10509]
gi|326345490|gb|EGD69233.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
O157:H7 str. 1125]
gi|326346653|gb|EGD70387.1| Nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
O157:H7 str. 1044]
gi|327250118|gb|EGE61837.1| rrf2 family protein family protein [Escherichia coli STEC_7v]
gi|330908520|gb|EGH37039.1| nitrite-sensitive transcriptional repressor NsrR [Escherichia coli
AA86]
gi|331035900|gb|EGI08138.1| HTH-type transcriptional repressor NsrR [Escherichia coli H736]
gi|331040697|gb|EGI12855.1| HTH-type transcriptional repressor NsrR [Escherichia coli M605]
gi|331046360|gb|EGI18450.1| HTH-type transcriptional repressor NsrR [Escherichia coli M718]
gi|331051795|gb|EGI23834.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA206]
gi|331056893|gb|EGI28887.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA143]
gi|331061672|gb|EGI33598.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA271]
gi|331071172|gb|EGI42529.1| HTH-type transcriptional repressor NsrR [Escherichia coli TA280]
gi|331071771|gb|EGI43107.1| HTH-type transcriptional repressor NsrR [Escherichia coli H591]
gi|331081418|gb|EGI52579.1| HTH-type transcriptional repressor NsrR [Escherichia coli H299]
gi|332083175|gb|EGI88406.1| rrf2 family protein family protein [Shigella boydii 5216-82]
gi|332083816|gb|EGI89034.1| rrf2 family protein family protein [Shigella dysenteriae 155-74]
gi|332087072|gb|EGI92206.1| rrf2 family protein family protein [Shigella boydii 3594-74]
gi|332346255|gb|AEE59589.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|332749054|gb|EGJ79477.1| rrf2 family protein family protein [Shigella flexneri K-671]
gi|332749323|gb|EGJ79744.1| rrf2 family protein family protein [Shigella flexneri 4343-70]
gi|332761860|gb|EGJ92134.1| rrf2 family protein family protein [Shigella flexneri 2747-71]
gi|332763226|gb|EGJ93469.1| nsrR [Shigella flexneri 2930-71]
gi|333009143|gb|EGK28599.1| rrf2 family protein family protein [Shigella flexneri K-218]
gi|333011981|gb|EGK31366.1| rrf2 family protein family protein [Shigella flexneri K-304]
Length = 141
Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|188580176|ref|YP_001923621.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
BJ001]
gi|179343674|gb|ACB79086.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
populi BJ001]
Length = 160
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y + + I++IA A ISE L K++ L + G+++T+RGR
Sbjct: 1 MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +P +I + VV+ TE+ + ECF++ C + C L L +AL AF
Sbjct: 61 GGGLRLAKPPGEIVVGAVVRETEDDLALVECFSAG--SCAITAPCRLRRALGEALAAFLA 118
Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142
VL +Y++ L+ I ++
Sbjct: 119 VLDRYTLADLLGGSEGDEIARLLG 142
>gi|292669568|ref|ZP_06602994.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
noxia ATCC 43541]
gi|292648777|gb|EFF66749.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
noxia ATCC 43541]
Length = 162
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+H + + IA+ ISE +L +++ PL +AG+VE+VRG
Sbjct: 16 MKLSTKGRYSVTALYELALHYGEGVVPLKTIAKTQGISENYLEQLMAPLRRAGLVESVRG 75
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
+GG L P +++TI ++ A E + +C + C G+C + +
Sbjct: 76 AQGGYTLALPPEEVTIGQIITAVEGPIALVDCLLTSAEAVDQSCVRAGNCVTRQIWEEVC 135
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
+ +VL ++ L+R
Sbjct: 136 DNINNVLNNIALSDLMRRGRQ 156
>gi|312880924|ref|ZP_07740724.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
DSM 12260]
gi|310784215|gb|EFQ24613.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
DSM 12260]
Length = 164
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++ Y +R L A + P RI +AEA I FL IL L G VE+ RG
Sbjct: 1 MAITQKCQYALRALFELACREGEGPVRIGTVAEAQNIPPRFLEGILNTLKAGGFVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
+ GG RL RPA I++ DV++ + S +C C L G C + +A A
Sbjct: 61 KEGGYRLLRPARDISVGDVIRYLQGSLSQVDCDPGSSREPCGLYGDCVFRPLWERAQKAL 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V +I+ V ++ ++
Sbjct: 121 ESVYDSTTIQDFVDRQAERER 141
>gi|167745701|ref|ZP_02417828.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662]
gi|317472704|ref|ZP_07932019.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
gi|167655013|gb|EDR99142.1| hypothetical protein ANACAC_00393 [Anaerostipes caccae DSM 14662]
gi|316899881|gb|EFV21880.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
Length = 165
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A+ + P +S I+E IS +L ++L L KAG+V+++RG
Sbjct: 14 MKLSTKGRYGLRAIVDIAVFGEKEPAAVSAISERQDISIRYLEQLLSKLKKAGLVKSIRG 73
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNA 117
+GG L A+ I++ DV++A E +C + C C +V ++ ++
Sbjct: 74 AQGGYVLAGNAEDISVGDVLRALEGDLTPVDCTELTDTEETCSGSKYCVTKTVWKRINDS 133
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+ ++ L ++++
Sbjct: 134 IAKTVDSIYLDELADEARAVQQ 155
>gi|258404994|ref|YP_003197736.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
retbaense DSM 5692]
gi|257797221|gb|ACV68158.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
retbaense DSM 5692]
Length = 153
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R+ YG+ +L AIH + P IS+IA +S + KI++ L + G + + G
Sbjct: 1 MKFSTRSRYGLHLLRDIAIHAESGPVSISEIASRHSMSLKYTEKIIRQLRQGGWLSSTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L R A + + ++V+ E+S + +C + CP G C S+ ++AL A +
Sbjct: 61 ARGGYQLTRQASAMPLGEIVRYLEDSPLLLDC-QKLRPGCPRCGVCLTRSLWQEALEAMY 119
Query: 120 DVLTQYSIECLVRN 133
L +++ LVR+
Sbjct: 120 AKLDSFTLADLVRD 133
>gi|311067422|ref|YP_003972345.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus
1942]
gi|310867939|gb|ADP31414.1| NO-dependent activator of the ResDE regulon [Bacillus atrophaeus
1942]
Length = 143
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A H + I QIAE IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLATQHTEDLCNIKQIAETYSISKNHLMKVIYQLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF S K C + CGL V +AL A+
Sbjct: 61 RGGGIRLGMAPEDINIGEVVRKTEDDFNIVECFDSGKNLCIISPVCGLKHVFNEALLAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++ LV+N+ I ++
Sbjct: 121 SVLDKYTLGDLVKNKQDIMRLL 142
>gi|16078003|ref|NP_388819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
subsp. subtilis str. 168]
gi|221308776|ref|ZP_03590623.1| hypothetical protein Bsubs1_05178 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221313099|ref|ZP_03594904.1| hypothetical protein BsubsN3_05114 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221318025|ref|ZP_03599319.1| hypothetical protein BsubsJ_05058 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221322299|ref|ZP_03603593.1| hypothetical protein BsubsS_05159 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|6136719|sp|O07573|NSRR_BACSU RecName: Full=HTH-type transcriptional regulator nsrR
gi|2226194|emb|CAA74483.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2633273|emb|CAB12777.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
subsp. subtilis str. 168]
Length = 146
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A + I QIAE IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF ++K C + CGL VL +AL A+
Sbjct: 61 RGGGIRLGMDPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++ LV+N+ I K+
Sbjct: 121 AVLDKYTLRDLVKNKEDIMKLL 142
>gi|321314662|ref|YP_004206949.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
BSn5]
gi|291483405|dbj|BAI84480.1| hypothetical protein BSNT_01615 [Bacillus subtilis subsp. natto
BEST195]
gi|320020936|gb|ADV95922.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
BSn5]
Length = 146
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A + I QIAE IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF ++K C + CGL VL +AL A+
Sbjct: 61 RGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDANKNLCVISPVCGLKHVLNEALLAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++ LV+N+ I K+
Sbjct: 121 AVLDKYTLRDLVKNKEDIMKLL 142
>gi|237703845|ref|ZP_04534326.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
sp. 3_2_53FAA]
gi|332280962|ref|ZP_08393375.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp.
D9]
gi|226901757|gb|EEH88016.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
sp. 3_2_53FAA]
gi|332103314|gb|EGJ06660.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Shigella sp.
D9]
Length = 161
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG+
Sbjct: 22 QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGK 81
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 82 NGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 137
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 138 ELDNYTLADLVEENQPLYKLL 158
>gi|169829842|ref|YP_001700000.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus
C3-41]
gi|168994330|gb|ACA41870.1| HTH-type transcriptional regulator [Lysinibacillus sphaericus
C3-41]
Length = 145
Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + + I +I+EA IS+ L K+ L G +ET+RG
Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISEAYNISKNHLMKVTHQLGLLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+
Sbjct: 61 RGGGIRLAIDPKSITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y+++ + ++ + +
Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142
>gi|54295371|ref|YP_127786.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens]
gi|53755203|emb|CAH16696.1| hypothetical protein lpl2456 [Legionella pneumophila str. Lens]
Length = 143
Score = 126 bits (318), Expect = 6e-28, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+
Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + + I + ++ E +F + CF K +C + C L SVL +A AF
Sbjct: 60 HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
+L QY++ ++ N S + +
Sbjct: 120 ILEQYTLADVLHNPSELSALLR 141
>gi|149203563|ref|ZP_01880532.1| rrf2 family protein [Roseovarius sp. TM1035]
gi|149142680|gb|EDM30722.1| rrf2 family protein [Roseovarius sp. TM1035]
Length = 150
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 60/142 (42%), Positives = 86/142 (60%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ IR+LM+CA ++D ++IAE C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAIRLLMFCAANSDRLVTKAEIAERCNISESHLAQVINRLSQLGFLYTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RP QIT+ DV + E+ VAECFA CPL +C L L A+ AF+
Sbjct: 61 TGGVRLGRPMSQITVGDVFRQLEQHTPVAECFADVDNTCPLTKACRLRVALVDAVEAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L + +++ LV N ++ IF+
Sbjct: 121 HLDEVTLDALVCNNDALFAIFS 142
>gi|254712372|ref|ZP_05174183.1| iron-responsive transcriptional regulator [Brucella ceti M644/93/1]
gi|254715444|ref|ZP_05177255.1| iron-responsive transcriptional regulator [Brucella ceti M13/05/1]
gi|261217178|ref|ZP_05931459.1| transcriptional regulator [Brucella ceti M13/05/1]
gi|261320049|ref|ZP_05959246.1| transcriptional regulator [Brucella ceti M644/93/1]
gi|260922267|gb|EEX88835.1| transcriptional regulator [Brucella ceti M13/05/1]
gi|261292739|gb|EEX96235.1| transcriptional regulator [Brucella ceti M644/93/1]
Length = 153
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 80/142 (56%), Positives = 107/142 (75%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA ++ +RI +IA A +SELFLFKILQPLV+ G+VETVRGR
Sbjct: 1 MRLTRQTNYTIRMLMYCAANDGKLSRIPEIARAYNVSELFLFKILQPLVEHGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R + I++ DVV+ TEE+F +AECF + +CPLV SCGL + LR+ALNAFF
Sbjct: 61 NGGVRLGRASQDISLFDVVRVTEENFSMAECFENDASECPLVDSCGLNAALREALNAFFA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +YSI LV+ R +++ +
Sbjct: 121 VLMKYSIADLVKARPNVRLLLG 142
>gi|238786347|ref|ZP_04630282.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC
43970]
gi|238712746|gb|EEQ04823.1| HTH-type transcriptional repressor nsrR [Yersinia bercovieri ATCC
43970]
Length = 141
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 78/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + I+Q+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPEGQMTNITQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+QI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPAEQIRIGDVVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L Y++ +V++ + + K+
Sbjct: 117 NELDNYTLADMVQDNTPLYKLL 138
>gi|227356227|ref|ZP_03840616.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
ATCC 29906]
gi|227163691|gb|EEI48607.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
ATCC 29906]
Length = 164
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A QI + V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGREAGQIFVAQVISAVDESIDATRCQGN-KEGCQGGDRCLTHTLWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S+E LV N +
Sbjct: 120 SFLSSISLEELVNNEEVM 137
>gi|332283993|ref|YP_004415904.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7]
gi|330427946|gb|AEC19280.1| hypothetical protein PT7_0740 [Pusillimonas sp. T7-7]
Length = 171
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ IA+ IS +L ++ L + +V+++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQHSGPVTLAAIAQRQNISLSYLEQLFGKLRRHKLVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALN 116
GG L R A IT+ D++ A +E C + GS C +
Sbjct: 61 PGGGYSLARLARNITVADIIFAVDEPLDATSCGGKENCNVGRNGSTGKCMTHELWSNLNR 120
Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 121 KMVDYLDSVSLQDLVDQQR-MRQL 143
>gi|304311681|ref|YP_003811279.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
gi|301797414|emb|CBL45634.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
Length = 166
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 77/152 (50%), Gaps = 11/152 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPN---------RISQIAEACCISELFLFKILQPLV 49
M +T TDY +RVLMY A+ + P+ I +IA A IS L K++ L
Sbjct: 1 MRITTFTDYTLRVLMYLALKEKPNEPSESRESVALATIPEIAAAYGISSNHLMKVVHHLA 60
Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
+ G +E++RG+ GG+RL DQI + V++A+E + + EC C + C L +
Sbjct: 61 RTGTIESIRGKGGGIRLAAAPDQIRLGQVIRASESNGPIVECLGEEPGVCKIAPVCRLAN 120
Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
+L A A + L QY++ L R ++ +
Sbjct: 121 ILGTAFEALYASLDQYTLADLTRQSKPLQGLL 152
>gi|226328026|ref|ZP_03803544.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198]
gi|225203730|gb|EEG86084.1| hypothetical protein PROPEN_01917 [Proteus penneri ATCC 35198]
Length = 164
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A QI + V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGRDAGQIFVAQVISAVDESVDATRCQGN-KEGCQGGDRCLTHTLWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S+E LV N +
Sbjct: 120 SFLSSISLEELVNNEEVM 137
>gi|238755908|ref|ZP_04617236.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC
29473]
gi|238705867|gb|EEP98256.1| HTH-type transcriptional repressor nsrR [Yersinia ruckeri ATCC
29473]
Length = 141
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L Y A + ISQ+ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALTYMASLPPGQMTSISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C + C + +C L VL +A+ F
Sbjct: 61 KNGGIRLGKPAENIRIGDVVREL-EPLSLVNCCSDF---CHITPACRLKQVLHQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V++ + + K+
Sbjct: 117 KELDNYTLADMVKDNAPLYKLL 138
>gi|237748047|ref|ZP_04578527.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
gi|229379409|gb|EEO29500.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
Length = 144
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 57/136 (41%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R ++ + D + + IS +L +I L K+G++ +VRG
Sbjct: 1 MKISTKGRYALRFMIDLVQNGGDSYTSLKDVTRRQTISPKYLEQIATSLSKSGLILSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R ++ T+ D+++ E +F C CP SC
Sbjct: 61 PQGGYKLARSPEKYTVADILRPIEGTFACVACLEQTPNACPRYESCSTVHFWEGLHEVMT 120
Query: 120 DVLTQYSIECLVRNRS 135
+ L ++ L +
Sbjct: 121 NYLNGTTLADLAVKKQ 136
>gi|197285716|ref|YP_002151588.1| iron-sulfur cluster transcriptional regulator [Proteus mirabilis
HI4320]
gi|194683203|emb|CAR43856.1| putative iron-sulfur cluster transcriptional regulator [Proteus
mirabilis HI4320]
Length = 164
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQQGPVPLADISERQGISLSYLEQLFSRLRKNELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A QI + V+ A +ES C + K C C ++ R +
Sbjct: 61 PGGGYLLGREAGQIFVAQVISAVDESVDATRCQGN-KEGCQGGDRCLTHTLWRDLSDRIT 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L+ S+E LV N +
Sbjct: 120 SFLSSISLEELVNNEEVM 137
>gi|164688544|ref|ZP_02212572.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM
16795]
gi|164602957|gb|EDQ96422.1| hypothetical protein CLOBAR_02189 [Clostridium bartlettii DSM
16795]
Length = 157
Score = 126 bits (318), Expect = 7e-28, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + ++ H+ P I IA I E +L +I L KA ++++VRG
Sbjct: 1 MKLSTKGRYGLKAMFELSLTHSKGPVSIKTIAAKQNIPEQYLEQIFSKLKKANLIKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R A +IT+ DV+ E +++C K C SC V K +A
Sbjct: 61 AQGGYLLSRKASEITVYDVLTVLEGPVSISDCLLD-KDSCENSDSCVTKLVWEKMRDAMD 119
Query: 120 DVLTQYSIECLVRNRSS 136
+V+ ++ +V N +
Sbjct: 120 NVMKSITLCDMVNNYNE 136
>gi|126739737|ref|ZP_01755428.1| rrf2 family protein [Roseobacter sp. SK209-2-6]
gi|126718969|gb|EBA15680.1| rrf2 family protein [Roseobacter sp. SK209-2-6]
Length = 149
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 78/143 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LM+CA ++D S+IAE C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMFCAANSDRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R +I + D+ + E + + ECFA CPL +C L L A AF+
Sbjct: 61 NGGMSLGRDPQEILMGDIFRHVEGNLPMVECFADADNSCPLTDACRLRVALSDAAQAFYS 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L +++ LV + + ++
Sbjct: 121 SLDDITLDSLVCDNHDLMRLLQP 143
>gi|51594783|ref|YP_068974.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis IP
32953]
gi|150260577|ref|ZP_01917305.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125]
gi|153947883|ref|YP_001402601.1| NsrR family transcriptional regulator [Yersinia pseudotuberculosis
IP 31758]
gi|161484881|ref|NP_667973.2| transcriptional repressor NsrR [Yersinia pestis KIM 10]
gi|161511445|ref|NP_991928.2| transcriptional repressor NsrR [Yersinia pestis biovar Microtus
str. 91001]
gi|162100152|ref|YP_653811.2| transcriptional repressor NsrR [Yersinia pestis Antiqua]
gi|162139427|ref|YP_649219.2| transcriptional repressor NsrR [Yersinia pestis Nepal516]
gi|167470114|ref|ZP_02334818.1| nitrite-sensitive repressor NsrR [Yersinia pestis FV-1]
gi|218927582|ref|YP_002345457.1| transcriptional repressor NsrR [Yersinia pestis CO92]
gi|229836639|ref|ZP_04456805.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A]
gi|229840251|ref|ZP_04460410.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842329|ref|ZP_04462484.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903932|ref|ZP_04519045.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516]
gi|270489081|ref|ZP_06206155.1| Rrf2 family protein [Yersinia pestis KIM D27]
gi|81640568|sp|Q66FA9|NSRR_YERPS RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372265|sp|Q1C106|NSRR_YERPA RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372266|sp|Q0WJT1|NSRR_YERPE RecName: Full=HTH-type transcriptional repressor nsrR
gi|119372267|sp|Q1CEG1|NSRR_YERPN RecName: Full=HTH-type transcriptional repressor nsrR
gi|189030892|sp|A7FMX3|NSRR_YERP3 RecName: Full=HTH-type transcriptional repressor nsrR
gi|51588065|emb|CAH19671.1| conserved hypothetical protein [Yersinia pseudotuberculosis IP
32953]
gi|115346193|emb|CAL19061.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|149289985|gb|EDM40062.1| hypothetical protein YPE_2889 [Yersinia pestis CA88-4125]
gi|152959378|gb|ABS46839.1| nitrite-sensitive repressor NsrR [Yersinia pseudotuberculosis IP
31758]
gi|229679702|gb|EEO75805.1| DNA-binding transcriptional regulator [Yersinia pestis Nepal516]
gi|229690639|gb|EEO82693.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
Orientalis str. India 195]
gi|229696617|gb|EEO86664.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229706323|gb|EEO92331.1| DNA-binding transcriptional regulator [Yersinia pestis Pestoides A]
gi|270337585|gb|EFA48362.1| Rrf2 family protein [Yersinia pestis KIM D27]
gi|320013755|gb|ADV97326.1| DNA-binding transcriptional regulator [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 141
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 61 KNGGIRLGKPADQILIGDVVRQM-EPLTLVNCSSDF---CHITPACRLKQVLNQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V++ S + K+
Sbjct: 117 KELDNYTLADMVKDNSPLYKLL 138
>gi|239946889|ref|ZP_04698642.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of
Ixodes scapularis]
gi|239921165|gb|EER21189.1| HTH-type transcriptional regulator NsrR [Rickettsia endosymbiont of
Ixodes scapularis]
Length = 142
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 66/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+
Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERICSVKEISEYYNISLNHLVKVIHRLAQLGYINSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L + + D+++ E + + ECF + C + SC +++A AF
Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120
Query: 121 VLTQYSIEC 129
L Y++E
Sbjct: 121 TLNNYTLED 129
>gi|254037192|ref|ZP_04871269.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
sp. 1_1_43]
gi|226840298|gb|EEH72300.1| LOW QUALITY PROTEIN: transcriptional repressor NsrR [Escherichia
sp. 1_1_43]
Length = 161
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG+
Sbjct: 22 QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGK 81
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + A I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 82 NGGIRLGKSASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 137
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 138 ELDNYTLADLVEENQPLYKLL 158
>gi|222054501|ref|YP_002536863.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221563790|gb|ACM19762.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 154
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A ++ P +I I+ IS +L +I Q L K GI+ + RG
Sbjct: 1 MRLSTKSRYGLRALFDIAYNSGNLPAQIQDISRRQNISPRYLEQIFQALKKKGILNSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117
+GG L R D+IT+ D+V+ATE + +C K C G C +V +A
Sbjct: 61 PQGGYCLARNPDEITVRDIVQATEGDTLLVDCSGGKKNKQHCGFDGGCVTQTVWDEASRE 120
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+ +++ L ++
Sbjct: 121 LNRLFGSITLKTLCDRGHAM 140
>gi|17545737|ref|NP_519139.1| hypothetical protein RSc1018 [Ralstonia solanacearum GMI1000]
gi|17428031|emb|CAD14720.1| putative of unknown function upf0074; transcription regulator
protein [Ralstonia solanacearum GMI1000]
gi|299066983|emb|CBJ38178.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
transcription factor [Ralstonia solanacearum CMR15]
Length = 193
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L R AD +T+ D++ A +E +C G C +
Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHSGRCMTHDLWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 VEYLDSVSLQNLVDQQRERQ 140
>gi|333010327|gb|EGK29760.1| rrf2 family protein family protein [Shigella flexneri VA-6]
Length = 141
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|332992276|gb|AEF02331.1| BadM/Rrf2 family transcriptional regulator [Alteromonas sp. SN2]
Length = 161
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ I+E IS +L ++ L K +V++VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALHSTRGPVPLADISERQAISLSYLEQLFSRLRKNQLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I+I +V++A +ES C + DC C S+ + +
Sbjct: 61 PGGGYLLGRDAANISIGEVIRAVDESVDATRC--QGQADCQSGDRCLTHSLWQYLSDRIS 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L+ R
Sbjct: 119 SFLNDITLGELMAKRD 134
>gi|330831194|ref|YP_004394146.1| Rrf2 family protein [Aeromonas veronii B565]
gi|328806330|gb|AEB51529.1| Rrf2 family protein [Aeromonas veronii B565]
Length = 156
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 80/143 (55%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + + +++++ +S + K++ LVK G +++ RG
Sbjct: 1 MRLTSYTDFGLRALLYLATLPEGELSSVAKVSALYGVSRNHMVKVVNQLVKLGYLQSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+R+ I I V++A E + +C C +V C L S L++A++AF
Sbjct: 61 KNGGIRMACDPATINIGQVIRALEGNLDGIDC---GSPACHIVSVCLLKSALKEAMDAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
V+ Y+++ L+ NR ++++F
Sbjct: 118 AVMDSYTLQDLLANRDELQRVFG 140
>gi|257440868|ref|ZP_05616623.1| iron-sulfur cluster assembly transcription factor IscR
[Faecalibacterium prausnitzii A2-165]
gi|257196648|gb|EEU94932.1| iron-sulfur cluster assembly transcription factor IscR
[Faecalibacterium prausnitzii A2-165]
Length = 143
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H + + ++AE ISE +L IL+ LV+ G +E +RG
Sbjct: 1 MIVSTKGRYALRVMIDLAEHQAERYVPLKEVAERQEISEKYLENILKVLVQNGFLEGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R DQ T+ +++ TE S C C + +C ++ + +
Sbjct: 61 KGGGYRLTRTPDQYTVAEILLLTEGSLAPVSCLVPGAPACERLPNCRTYTMWKGLNDMIA 120
Query: 120 DVLTQYSIECLVR 132
D + ++ L
Sbjct: 121 DYFGKITLADLAA 133
>gi|188026362|ref|ZP_02961812.2| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827]
gi|188020109|gb|EDU58149.1| hypothetical protein PROSTU_03881 [Providencia stuartii ATCC 25827]
Length = 165
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + I+++ E +S + KI+ L G V+ RG+
Sbjct: 27 QLTSFTDYGLRALIYLASLPEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYVKATRGK 86
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L +PA+ I + DVV+A E + C C + +C L VL +A+ F
Sbjct: 87 NGGITLGQPAETIRVGDVVRAL-EPLTLVNCSGEF---CHITPACRLKGVLHQAIQQFLK 142
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L ++++ +V++ S + ++
Sbjct: 143 ELDKHTLADMVKDNSPLYQLL 163
>gi|159044209|ref|YP_001533003.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157911969|gb|ABV93402.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length = 150
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 56/142 (39%), Positives = 82/142 (57%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ +R LMYCA+H R S++A+A SE L +++ L + G +ETVRGR
Sbjct: 1 MRLTTRTNLAMRTLMYCAVHTGRNIRTSEVAKATNASENHLGQVINMLGQTGFIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R A IT+ V + E AECF + + CPL+ C L L +AL AF+
Sbjct: 61 GGGIRLARNAQDITVGGVFRVFEAGTPFAECFDAKECTCPLISVCRLKGALGEALMAFYR 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L ++E LV++ + +K +
Sbjct: 121 SLDAITLESLVKDNTGLKDLLG 142
>gi|187731546|ref|YP_001882869.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94]
gi|226737680|sp|B2TY53|NSRR_SHIB3 RecName: Full=HTH-type transcriptional repressor nsrR
gi|187428538|gb|ACD07812.1| transcriptional repressor NsrR [Shigella boydii CDC 3083-94]
Length = 141
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|333011161|gb|EGK30575.1| rrf2 family protein family protein [Shigella flexneri K-272]
gi|333012645|gb|EGK32025.1| rrf2 family protein family protein [Shigella flexneri K-227]
Length = 141
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A+ + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMALLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|163749814|ref|ZP_02157059.1| Rrf2 family protein [Shewanella benthica KT99]
gi|161330328|gb|EDQ01307.1| Rrf2 family protein [Shewanella benthica KT99]
Length = 152
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDYGIR LMY AI + RIS+I + +S + KI+ L K G ++T+R
Sbjct: 1 MQLTRYTDYGIRTLMYLAIQPERETLFRISEITQVFDLSPNHVSKIVHHLGKLGYLKTIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL + +I I +V+ E S +C + C L SC L VL +A+ A+
Sbjct: 61 GKSGGFRLGKSPKEINIGQLVRVLENSLTPIDCSKPY---CRLTPSCQLWGVLAEAVTAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL QYS+ +V N + K+
Sbjct: 118 LTVLDQYSLADIVSNNHELVKLL 140
>gi|226356822|ref|YP_002786562.1| Rff2 family transcriptional regulator [Deinococcus deserti VCD115]
gi|226318812|gb|ACO46808.1| putative transcriptional regulator, Rff2 family [Deinococcus
deserti VCD115]
Length = 151
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + + ++E IS+ +L +I L +AG ++++RG
Sbjct: 1 MWVSTKAQYGLRALIEIGRRDGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSIRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA I+ DVV A E S C C CG ++ + A D
Sbjct: 61 HGGYRLSRPAADISAYDVVTAMEGSLAPVSCVEDDH-TCDHQNVCGTQNLWHRVDAALKD 119
Query: 121 VLTQYSIECLVRNRSSIK 138
VL ++ L+ ++
Sbjct: 120 VLGSTTLADLIVESEQLQ 137
>gi|71278574|ref|YP_267874.1| Rrf2 family protein [Colwellia psychrerythraea 34H]
gi|71144314|gb|AAZ24787.1| Rrf2 family protein [Colwellia psychrerythraea 34H]
Length = 168
Score = 126 bits (318), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ IH P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVTIHAVSGPVSLADISERQGISLSYLEQLFSRLRKEGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R + QI + DV+ A ES +C +C C S+
Sbjct: 61 PGGGYRLGRCSAQIAVADVIYAVNESVDATKCSGKG--NCQDGEQCLTHSLWEGLSQRIE 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L ++ LV
Sbjct: 119 EFLKNITLSELVAKGD 134
>gi|307611397|emb|CBX01061.1| hypothetical protein LPW_27621 [Legionella pneumophila 130b]
Length = 143
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 75/142 (52%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+
Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYTISNNHLIKIIHNLSKMGLIKTIRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + + I + ++ E +F + CF K +C + C L SVL +A AF
Sbjct: 60 HGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPVCKLKSVLYEAQRAFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
+L QY++ ++ N S + +
Sbjct: 120 ILEQYTLADVLHNPSELSALLR 141
>gi|225026056|ref|ZP_03715248.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353]
gi|224956618|gb|EEG37827.1| hypothetical protein EUBHAL_00295 [Eubacterium hallii DSM 3353]
Length = 136
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++Y A ++ + + +IAE IS +L I+ L K ++ + RG
Sbjct: 1 MMVSSKGRYALRVMIYLAQNDREELIPLKEIAENQNISMKYLEMIVSLLHKGNMLISGRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG RL R + TI ++K TE++ C K+ C G C + +K
Sbjct: 61 KKGGYRLARKPSEYTIGSILKLTEKTLAPVNCLEGGKVTCEKAGYCITLPMWQKLDGIID 120
Query: 120 DVLTQYSIECLVRNR 134
D L ++E L+ R
Sbjct: 121 DYLETVTLEDLLEGR 135
>gi|148652572|ref|YP_001279665.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp.
PRwf-1]
gi|148571656|gb|ABQ93715.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp.
PRwf-1]
Length = 175
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 20/161 (12%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT +DY +R LMY A+ D I+ IA + IS L KI+ L + G +E++R
Sbjct: 1 MRLTNYSDYALRTLMYLAVIPDRNTLATITDIANSYQISRSHLTKIIHQLAQIGYIESIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID------------------CP 100
G+ GG+RL + A I + +V++ TE F V CF + D C
Sbjct: 61 GKNGGIRLAKAAQDINLGEVIRQTEPDFHVVPCFPAPGCDAQSRSNSKSKAQPKPADYCA 120
Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
+ C L SV +A AF V+ Y++ +V N ++ +I
Sbjct: 121 ITPVCKLKSVFAEATGAFLKVMDNYTLADIVANEEALWQIL 161
>gi|88800857|ref|ZP_01116412.1| hypothetical protein MED297_17612 [Reinekea sp. MED297]
gi|88776430|gb|EAR07650.1| hypothetical protein MED297_17612 [Reinekea sp. MED297]
Length = 154
Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 69/142 (48%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + T+Y R+L+ + +S+IA A IS L K+ L++ +V+TVRGR
Sbjct: 1 MKINSFTNYSFRILIMLGANPGRTIPLSEIASAYGISINHLKKVAARLIEQSLVDTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + + I + ++ + ++ EC + C + C L + +KAL F D
Sbjct: 61 SGGLVLKKAPEDIRLGEIFRISQTDTAFVECMDASSEGCVISPVCRLQGIFQKALAQFID 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
+ Y++ LV N+ I N
Sbjct: 121 TMDGYTLADLVENKDDINVHLN 142
>gi|304311801|ref|YP_003811399.1| Regulator of the isc operon [gamma proteobacterium HdN1]
gi|301797534|emb|CBL45754.1| Regulator of the isc operon [gamma proteobacterium HdN1]
Length = 166
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P +++I+E IS +L ++ + + +V++VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHTGKGPVSLAEISERQGISISYLEQLFAKMRRKDLVQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I + +++ A +ES C DC +C + ++
Sbjct: 61 PGGGYLLSRDGSTICVAEIIDAVDESVDATRCQGLG--DCQNGETCLTHDLWQELSIEIH 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L S++ LV RS I++I
Sbjct: 119 RFLGGISLKSLVS-RSQIQQI 138
>gi|163758625|ref|ZP_02165712.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43]
gi|162283915|gb|EDQ34199.1| hypothetical protein HPDFL43_14417 [Hoeflea phototrophica DFL-43]
Length = 149
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 84/142 (59%), Positives = 108/142 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y +R+LMYCA ++ +RI IA+A +SELFLFKILQPL KAG+VE+VRGR
Sbjct: 1 MRLTRQTNYAVRMLMYCAANDGNLSRIGDIAKAYSVSELFLFKILQPLTKAGLVESVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R AD+IT+LDVV TE+SF +AECF + +CPLV SCGL + LRKAL AFF+
Sbjct: 61 NGGIRLGRAADKITLLDVVSVTEDSFAMAECFENDATECPLVDSCGLNTALRKALGAFFE 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL YSI+ LV+ R SI +
Sbjct: 121 VLATYSIDDLVKARPSINFLLG 142
>gi|227112379|ref|ZP_03826035.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
gi|227325972|ref|ZP_03829996.1| transcriptional repressor NsrR [Pectobacterium carotovorum subsp.
carotovorum WPP14]
Length = 141
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPGGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGKPAETIRIGDVVREL-EPLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ +V+ + K+
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138
>gi|283786857|ref|YP_003366722.1| transcriptional repressor [Citrobacter rodentium ICC168]
gi|282950311|emb|CBG89958.1| transcriptional repressor [Citrobacter rodentium ICC168]
Length = 141
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG + +RG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFITAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + A+ I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKAANTIRIGDVVREL-EPLSLVNCNSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEQNQPLYKLL 138
>gi|30248932|ref|NP_841002.1| hypothetical protein NE0928 [Nitrosomonas europaea ATCC 19718]
gi|30138549|emb|CAD84839.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC
19718]
Length = 151
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 47/139 (33%), Positives = 82/139 (58%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+L Y + + + I++IA+ IS + KI+ L + G V+T+RG+
Sbjct: 1 MRLTNYSDYALRILTYLGLKREELSTITEIADCYGISRNHVVKIVHHLGQLGYVDTLRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL ++I I +V++ TE S + ECF++ + C + SC L + + +AL+AF
Sbjct: 61 NGGIRLAHAPEKINIGEVIRHTETSMDIVECFSN-QNSCIIGCSCVLRTAISEALSAFMA 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL Y++ L+ R + +
Sbjct: 120 VLDDYTLADLIAPRRQLSR 138
>gi|307243658|ref|ZP_07525799.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis
DSM 17678]
gi|306492968|gb|EFM64980.1| transcriptional regulator, Rrf2 family [Peptostreptococcus stomatis
DSM 17678]
Length = 154
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 68/138 (49%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + YG++ + A+ + + P + IA IS+ +L +I L KAG+V++VR
Sbjct: 1 MKLSTKGKYGLKAMFELAVSGNENEPVPLKYIANRQEISDQYLEQIFSALKKAGLVKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L +PA +IT+ D+++ E EC C SC V + A
Sbjct: 61 GAQGGYFLSKPASEITVADILRVLEGDMAFTECLLDEDA-CKNFDSCSTRYVWARIKQAI 119
Query: 119 FDVLTQYSIECLVRNRSS 136
DV S++ + + +S
Sbjct: 120 EDVTMSISLQDMADDYNS 137
>gi|320173668|gb|EFW48858.1| Nitrite-sensitive transcriptional repressor NsrR [Shigella
dysenteriae CDC 74-1112]
Length = 141
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVSCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|86139275|ref|ZP_01057845.1| rrf2 family protein [Roseobacter sp. MED193]
gi|85824119|gb|EAQ44324.1| rrf2 family protein [Roseobacter sp. MED193]
Length = 157
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 78/143 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +R+LMYCA + D S+IAE C ISE L +++ L + G + T RGR
Sbjct: 1 MRITKRTNIAVRLLMYCAANADRLVTKSEIAECCNISENHLAQVINQLSQLGYLHTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R ++I I +V + E + + ECFA CPL +C L L A AF+
Sbjct: 61 NGGMALGRRPEEIQIGNVFRDVEGALPMVECFADADNTCPLASACRLKVALSDAAQAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L ++E LV + + +I
Sbjct: 121 SLDDITLEALVCDNHDLMRILQP 143
>gi|157155926|ref|YP_001465677.1| transcriptional repressor NsrR [Escherichia coli E24377A]
gi|157163642|ref|YP_001460960.1| transcriptional repressor NsrR [Escherichia coli HS]
gi|170021812|ref|YP_001726766.1| transcriptional repressor NsrR [Escherichia coli ATCC 8739]
gi|194439542|ref|ZP_03071616.1| transcriptional repressor NsrR [Escherichia coli 101-1]
gi|209921666|ref|YP_002295750.1| transcriptional repressor NsrR [Escherichia coli SE11]
gi|218556730|ref|YP_002389644.1| transcriptional repressor NsrR [Escherichia coli IAI1]
gi|253775197|ref|YP_003038028.1| transcriptional repressor NsrR [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254164107|ref|YP_003047215.1| transcriptional repressor NsrR [Escherichia coli B str. REL606]
gi|297517580|ref|ZP_06935966.1| transcriptional repressor NsrR [Escherichia coli OP50]
gi|307314874|ref|ZP_07594466.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
gi|312965852|ref|ZP_07780078.1| rrf2 family protein [Escherichia coli 2362-75]
gi|189030882|sp|A7ZV48|NSRR_ECO24 RecName: Full=HTH-type transcriptional repressor nsrR
gi|189030883|sp|A8A7S3|NSRR_ECOHS RecName: Full=HTH-type transcriptional repressor nsrR
gi|189030885|sp|B1IT28|NSRR_ECOLC RecName: Full=HTH-type transcriptional repressor nsrR
gi|226736216|sp|B7M8T8|NSRR_ECO8A RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737669|sp|B6I282|NSRR_ECOSE RecName: Full=HTH-type transcriptional repressor nsrR
gi|157069322|gb|ABV08577.1| transcriptional repressor NsrR [Escherichia coli HS]
gi|157077956|gb|ABV17664.1| transcriptional repressor NsrR [Escherichia coli E24377A]
gi|169756740|gb|ACA79439.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC
8739]
gi|194421541|gb|EDX37554.1| transcriptional repressor NsrR [Escherichia coli 101-1]
gi|209914925|dbj|BAG79999.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218363499|emb|CAR01153.1| DNA-binding transcriptional regulator [Escherichia coli IAI1]
gi|242379700|emb|CAQ34524.1| NsrR transcriptional repressor [Escherichia coli BL21(DE3)]
gi|253326241|gb|ACT30843.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253976008|gb|ACT41679.1| predicted DNA-binding transcriptional regulator [Escherichia coli B
str. REL606]
gi|253980164|gb|ACT45834.1| predicted DNA-binding transcriptional regulator [Escherichia coli
BL21(DE3)]
gi|306905677|gb|EFN36206.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
gi|309704683|emb|CBJ04033.1| transcriptional repressor [Escherichia coli ETEC H10407]
gi|312289095|gb|EFR16989.1| rrf2 family protein [Escherichia coli 2362-75]
gi|315063492|gb|ADT77819.1| predicted DNA-binding transcriptional regulator [Escherichia coli
W]
gi|323182284|gb|EFZ67694.1| rrf2 family protein family protein [Escherichia coli 1357]
gi|323380429|gb|ADX52697.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11]
gi|323946026|gb|EGB42063.1| transcriptional regulator [Escherichia coli H120]
gi|323960327|gb|EGB55967.1| transcriptional regulator [Escherichia coli H489]
gi|323970567|gb|EGB65826.1| transcriptional regulator [Escherichia coli TA007]
gi|324118743|gb|EGC12635.1| transcriptional regulator [Escherichia coli E1167]
Length = 141
Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + A I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKSASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|296332358|ref|ZP_06874819.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305673638|ref|YP_003865310.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
subsp. spizizenii str. W23]
gi|296150276|gb|EFG91164.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|305411882|gb|ADM37001.1| NO-dependent activator of the ResDE regulon [Bacillus subtilis
subsp. spizizenii str. W23]
Length = 146
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 59/143 (41%), Positives = 83/143 (58%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A + I QIAE IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLAAERPGELSNIKQIAETYSISKNHLMKVIYRLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF +K C + CGL VL +AL A+
Sbjct: 61 RGGGIRLGMEPEDINIGEVVRKTEDDFNIVECFDVNKNLCVISPVCGLKHVLNEALMAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL Y++ LV+N+ I K+
Sbjct: 121 AVLDNYTLRDLVKNKEDIMKLLR 143
>gi|77361335|ref|YP_340910.1| hypothetical protein PSHAa2419 [Pseudoalteromonas haloplanktis
TAC125]
gi|76876246|emb|CAI87468.1| conserved protein of unknown function [Pseudoalteromonas
haloplanktis TAC125]
Length = 149
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 84/145 (57%), Gaps = 5/145 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M++++ TDY +RVL+Y AI+ + I +IAE +S+ L K++Q L G + + R
Sbjct: 1 MNISRFTDYSLRVLIYLAINKNTNEIKTIKEIAECYGVSKNHLMKVVQQLSAQGYINSTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG++L A+QI I +V++ E + ECF + C + +C L VL A+ +F
Sbjct: 61 GKNGGIKLNHAAEQINIGQLVRSFEGKSALVECFGENNF-CIITPACQLKKVLSHAIESF 119
Query: 119 FDVLTQYSIECLVR--NRSSIKKIF 141
F+ L QY++ L+ N++ + KI
Sbjct: 120 FNCLDQYTLADLINGPNKAVLSKIL 144
>gi|119384427|ref|YP_915483.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119374194|gb|ABL69787.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 147
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y + I +IA+A IS+ L K++ LV AG + ++RGR
Sbjct: 1 MRLTRYTDYAMRVLLYLGREPERLCPIGEIAQAYGISQNHLMKVINDLVNAGFLASLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RP +I I +V+ TE+ F + C +C + +CGLTSVL +A+ F
Sbjct: 61 NGGIRLARPPAEINIGALVRHTEDDFDLVGC-----GNCIIAPACGLTSVLDEAMAGFMA 115
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL YS+ ++ R + N
Sbjct: 116 VLDGYSLADVLARRPDFSYLLNP 138
>gi|126650509|ref|ZP_01722732.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905]
gi|126592665|gb|EAZ86664.1| hypothetical protein BB14905_07963 [Bacillus sp. B14905]
Length = 145
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + + I +I++A IS+ L K+ L G +ET+RG
Sbjct: 1 MRLTLYTDYSLRTLIYLGAKEDGQLSTIQEISDAYNISKNHLMKVTHQLGLLGYIETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL ITI ++V+ TEE F + ECF C + C L VL +AL A+
Sbjct: 61 RGGGIRLAIDPKTITIGEIVRHTEEDFHLVECFDKENNLCKIAPECQLKGVLYEALQAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y+++ + ++ + +
Sbjct: 121 TVLDRYTLDDFLHSKEKLMALL 142
>gi|332654223|ref|ZP_08419967.1| iron-sulfur cluster assembly transcription factor IscR
[Ruminococcaceae bacterium D16]
gi|332517309|gb|EGJ46914.1| iron-sulfur cluster assembly transcription factor IscR
[Ruminococcaceae bacterium D16]
Length = 139
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A + IA+ +SE +L I++ L + G + VRG
Sbjct: 3 MMVSTKGRYALRVMIDLAQQGGAGYIPLKDIAQRQGLSEKYLESIVKLLARNGDLAGVRG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R ++ +++ TE C A C C + K
Sbjct: 63 KGGGYRLTRAPKDYSVGAILRLTEGKLAPVNCQALEGQ-CENAAQCRTRPLWEKLDAMVE 121
Query: 120 DVLTQYSIECLVR 132
+ L ++ L+
Sbjct: 122 EYLDGVTLADLLE 134
>gi|146310026|ref|YP_001175100.1| transcriptional repressor NsrR [Enterobacter sp. 638]
gi|189030886|sp|A4W5R9|NSRR_ENT38 RecName: Full=HTH-type transcriptional repressor nsrR
gi|145316902|gb|ABP59049.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
Length = 141
Score = 126 bits (317), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + ISQ+ E +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPQGQMTSISQVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I + DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPAQSIRVGDVVREL-EPLSLVNCSSDF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138
>gi|94309969|ref|YP_583179.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
metallidurans CH34]
gi|93353821|gb|ABF07910.1| transcriptional regulator of iron sulfur clusterassembly
[Cupriavidus metallidurans CH34]
Length = 184
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 VEYLDSVSLKNLVDQQRARQ 140
>gi|319779386|ref|YP_004130299.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9]
gi|317109410|gb|ADU92156.1| Iron-sulfur cluster regulator IscR [Taylorella equigenitalis MCE9]
Length = 178
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 5/140 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ + + P +S I+ IS +L ++ L + +VE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLGLRSHSGPVTLSAISSRQNISLSYLEQLFSKLRRHELVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115
GG L R A IT+ D+V A +E C ++ D G C +
Sbjct: 61 PGGGYTLARNAKDITVADIVFAVDEPLDATGCGNKLPCNNGRDGRDHGHCMTHDLWSSLN 120
Query: 116 NAFFDVLTQYSIECLVRNRS 135
D L S++ LV ++
Sbjct: 121 AHMVDYLDSVSLQDLVDHQR 140
>gi|15892744|ref|NP_360458.1| hypothetical protein RC0821 [Rickettsia conorii str. Malish 7]
gi|15619921|gb|AAL03359.1| unknown [Rickettsia conorii str. Malish 7]
Length = 142
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 66/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+
Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L + + D+++ E + + ECF + C + SC +++A AF
Sbjct: 61 GGGIKLAFNPSSMKLGDIIEKLEPNMDIVECFNKNTNSCRITNSCQFKHFIKEASEAFIK 120
Query: 121 VLTQYSIEC 129
L Y++E
Sbjct: 121 TLNNYTLED 129
>gi|323698961|ref|ZP_08110873.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
ND132]
gi|323458893|gb|EGB14758.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans ND132]
Length = 147
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT R+ YG R+L+ A+H++ P A+ +S +L K+++ L +AG V+ R
Sbjct: 1 MKLTTRSRYGTRLLLDIALHSENGSPVPSKDTADREGLSLKYLEKLIKMLKQAGYVKGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L R + I+I +V + + V C CP C S+ A A
Sbjct: 61 GPNGGNVLVRAPEDISIGEVARILDGEEQVLGC-EGDPSTCPRAAVCLKRSIWDDASLAM 119
Query: 119 FDVLTQYSIECLVRN 133
+ +L YS+ L+++
Sbjct: 120 YRMLDSYSLADLMKD 134
>gi|218282015|ref|ZP_03488327.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989]
gi|218217002|gb|EEC90540.1| hypothetical protein EUBIFOR_00898 [Eubacterium biforme DSM 3989]
Length = 142
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+L+ A HND + IA IS+ +L +I+ L K+ +V++ RG
Sbjct: 1 MKISTKGRYALRLLIDLAQHNDSGFITLKDIAARQNISKKYLEQIVPILTKSQMVQSNRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + DQI + DV+ ATE + C S CP C +
Sbjct: 61 FQGGYKLAKNIDQICVYDVLVATEGNLSCVACLDSDVNTCPRKEDCATLYIYEGLNQVIK 120
Query: 120 DVLTQYSIECLVRNRSS 136
L +++ ++ + S
Sbjct: 121 TYLKGITLQDILSHEQS 137
>gi|308172925|ref|YP_003919630.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM
7]
gi|307605789|emb|CBI42160.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens DSM
7]
Length = 144
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 87/144 (60%), Gaps = 1/144 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A + + I +IA+ IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+
Sbjct: 61 RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
VL +Y++ LV+N+ I ++ +
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLLRS 144
>gi|220934620|ref|YP_002513519.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7]
gi|219995930|gb|ACL72532.1| Rrf2 family protein [Thioalkalivibrio sp. HL-EbGR7]
Length = 143
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 53/136 (38%), Positives = 76/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y A++ D +RI+ IAEA IS L K++ L G + T RG+
Sbjct: 1 MQLTRHTDYALRVLIYLAVNPDRLSRITDIAEAYDISRHHLVKVVHELAGHGHILTYRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RP +I I DVV+ EE+ + C A C ++ C L VL A +AF
Sbjct: 61 HGGMRLARPPAEIRIGDVVRDMEENLEIINCSAPM---CIILPDCRLKGVLNDARDAFMA 117
Query: 121 VLTQYSIECLVRNRSS 136
L + ++ LV +
Sbjct: 118 TLDRVTLAELVVKKEK 133
>gi|261822840|ref|YP_003260946.1| transcriptional repressor NsrR [Pectobacterium wasabiae WPP163]
gi|261606853|gb|ACX89339.1| transcriptional regulator, BadM/Rrf2 family [Pectobacterium
wasabiae WPP163]
Length = 141
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGKPAETIRIGDVVREL-EPLTLVNCSHEF---CHITPACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ +V+ + K+
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138
>gi|242238239|ref|YP_002986420.1| transcriptional repressor NsrR [Dickeya dadantii Ech703]
gi|242130296|gb|ACS84598.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
Ech703]
Length = 141
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + I+++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPDGKMTSITEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R I I DVV+ E + C C + +C L VLR+A+ F
Sbjct: 61 KNGGIRLGRDPATIRIGDVVREL-EPLALVNCNHEF---CHITSACRLKQVLRQAVEQFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V+ + ++
Sbjct: 117 QELDNYTLADMVKENPPLYQLL 138
>gi|224823937|ref|ZP_03697046.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
gi|224604392|gb|EEG10566.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
Length = 160
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ H + P ++ I+E IS +L ++ L +A +VE+VRG
Sbjct: 1 MRLTTKGRFAVTAMLDLALRHGNGPVTLAGISERQSISLSYLEQLFGKLRRAELVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A+QI++ D++ A +E +C + +C C + F
Sbjct: 61 PGGGYTLAKSAEQISVADIITAVDEPVDATQC--GGRENCHDNHRCMTHDLWTNLNATIF 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L++ ++ LV + +
Sbjct: 119 DYLSKVTLFSLVAEQHA 135
>gi|168751471|ref|ZP_02776493.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4113]
gi|168754748|ref|ZP_02779755.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4401]
gi|168766456|ref|ZP_02791463.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4486]
gi|168774110|ref|ZP_02799117.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4196]
gi|168780609|ref|ZP_02805616.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4076]
gi|195935968|ref|ZP_03081350.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4024]
gi|208808424|ref|ZP_03250761.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4206]
gi|208812580|ref|ZP_03253909.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4045]
gi|208819958|ref|ZP_03260278.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4042]
gi|209397401|ref|YP_002273720.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4115]
gi|254796197|ref|YP_003081034.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
TW14359]
gi|226736214|sp|B5Z2I4|NSRR_ECO5E RecName: Full=HTH-type transcriptional repressor nsrR
gi|187770187|gb|EDU34031.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4196]
gi|188014508|gb|EDU52630.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4113]
gi|189001762|gb|EDU70748.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4076]
gi|189357816|gb|EDU76235.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4401]
gi|189363933|gb|EDU82352.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4486]
gi|208728225|gb|EDZ77826.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4206]
gi|208733857|gb|EDZ82544.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4045]
gi|208740081|gb|EDZ87763.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4042]
gi|209158801|gb|ACI36234.1| transcriptional repressor NsrR [Escherichia coli O157:H7 str.
EC4115]
gi|209750226|gb|ACI73420.1| hypothetical protein ECs5154 [Escherichia coli]
gi|254595597|gb|ACT74958.1| DNA-binding transcriptional regulator [Escherichia coli O157:H7
str. TW14359]
Length = 141
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGLMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 TELDNYTLADLVEENQPLYKLL 138
>gi|229586877|ref|YP_002845378.1| Putative transcriptional regulator [Rickettsia africae ESF-5]
gi|228021927|gb|ACP53635.1| Putative transcriptional regulator [Rickettsia africae ESF-5]
Length = 142
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 66/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+
Sbjct: 1 MQLTSFTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L + + D+++ E + + ECF + C + SC +++A AF
Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEAFIK 120
Query: 121 VLTQYSIEC 129
L Y++E
Sbjct: 121 TLNNYTLED 129
>gi|241662560|ref|YP_002980920.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
12D]
gi|309781143|ref|ZP_07675880.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia
sp. 5_7_47FAA]
gi|240864587|gb|ACS62248.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
12D]
gi|308919964|gb|EFP65624.1| iron-sulfur cluster assembly transcription factor IscR [Ralstonia
sp. 5_7_47FAA]
Length = 197
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
GG L R AD +T+ D++ A +E +C G C +
Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHVGGHTGRCMTHDLWATL 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 NQKMVEYLDSVSLQNLVDQQRERQ 144
>gi|54298536|ref|YP_124905.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris]
gi|148360004|ref|YP_001251211.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby]
gi|296108175|ref|YP_003619876.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99
Alcoy]
gi|53752321|emb|CAH13753.1| hypothetical protein lpp2600 [Legionella pneumophila str. Paris]
gi|148281777|gb|ABQ55865.1| hypothetical protein LPC_1934 [Legionella pneumophila str. Corby]
gi|295650077|gb|ADG25924.1| Predicted transcriptional regulator [Legionella pneumophila 2300/99
Alcoy]
Length = 143
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y A+ I I +A IS L KI+ L K G+++T+RG+
Sbjct: 1 MQLTQFTDYSLRALIYIALKKGS-CTIKDITDAYSISNNHLIKIIHNLSKMGLIKTIRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + + I + ++ E +F + CF K +C + +C L SVL +A AF
Sbjct: 60 NGGILMAASPETINLGQLIMELEPNFDLVPCFNKEKANCCIAPACKLKSVLYEAQRAFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
+L QY++ ++ N S + +
Sbjct: 120 ILEQYTLADVLHNPSELSVLLR 141
>gi|223928089|gb|ACN23804.1| iron-sulfur cluster regulator [Clostridium sp. enrichment culture
clone 7-14]
Length = 153
Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H + + +A+ ISE +L I++ LVKA ++ +RG
Sbjct: 11 MLISTKGRYALRVMVDLAEHRTEGYIPLKAVAQRQDISEKYLESIIKLLVKAKLLNGLRG 70
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + + T+ +++ TEES C CP + C S+ +
Sbjct: 71 KGGGYQLTKAPELYTVGSILRLTEESLAPVSCLEPGAASCPRMAECRTLSLWQGLDRVIS 130
Query: 120 DVLTQYSIECLVR 132
D L ++ LV+
Sbjct: 131 DYLDNITVADLVK 143
>gi|121609329|ref|YP_997136.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter
eiseniae EF01-2]
gi|121553969|gb|ABM58118.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter
eiseniae EF01-2]
Length = 179
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + GIVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRNGIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R AD T+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARRADDTTVADIIVSVDEPMDATQC--GGKENCLGEAGRCMTHELWTALNQHM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV +
Sbjct: 119 KEFLEAVTLQQLVDEQ 134
>gi|134095421|ref|YP_001100496.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Herminiimonas arsenicoxydans]
gi|133739324|emb|CAL62374.1| Iron-sulfur cluster assembly transcription factor IscR
[Herminiimonas arsenicoxydans]
Length = 157
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116
GG L R A+ +T+ D++ A +E +C P G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120
Query: 117 AFFDVLTQYSIECLVRNRSS 136
D L S++ LV +
Sbjct: 121 KMVDYLDSVSLKDLVDQQKQ 140
>gi|256830950|ref|YP_003159678.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium
baculatum DSM 4028]
gi|256580126|gb|ACU91262.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium
baculatum DSM 4028]
Length = 153
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 77/141 (54%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ Y R+L+ A+HN+ P+R++ I+E I+ F+ +I++PL AG+V + RG
Sbjct: 1 MKLSAKSRYASRILLDLALHNEGVPHRVNDISERTGITVPFIEQIIKPLKHAGMVTSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R + IT+ D+V+ E S ++ C ++ ++ C C + ++A +A
Sbjct: 61 AAGGHQLGRSPENITLGDIVRIMEGSVELSACLSAPEL-CERTAVCPTRAAWQRATDAML 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L ++ L + ++
Sbjct: 120 RELDTITLAGLAGGAPNCCQL 140
>gi|90418251|ref|ZP_01226163.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
gi|90337923|gb|EAS51574.1| conserved hypothetical protein [Aurantimonas manganoxydans
SI85-9A1]
Length = 151
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 85/141 (60%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RV++Y A D + ++ I+EA IS L K++ L KAG V T+RGR
Sbjct: 1 MRLTRYTDYALRVVIYLAARPDGLSSVADISEAYGISRNHLTKVVHELGKAGYVTTLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA QI + ++V+ TE+ F +A+C C + +CG++ VL +A+ AF
Sbjct: 61 SGGIRLARPASQIFVGELVRTTEDGFDLADC-----NRCIIQPACGMSGVLAEAVTAFLA 115
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL +YS L + I +F
Sbjct: 116 VLDRYSFADLPKREIDILSLF 136
>gi|254786630|ref|YP_003074059.1| iron-sulfur cluster assembly transcription factor IscR
[Teredinibacter turnerae T7901]
gi|237686389|gb|ACR13653.1| iron-sulfur cluster assembly transcription factor IscR
[Teredinibacter turnerae T7901]
Length = 164
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H P ++ I++ IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHAQRGPVSLADISKRQGISLSYLEQLFAKLRQNALVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A ++ + +V A ES C +C C + +
Sbjct: 61 PGGGYKLSREASELFVAQIVDAVNESIDATSC--GGAGNCNQGDVCLTHYLWCDLSDQIH 118
Query: 120 DVLTQYSIECLVRNRS 135
L+ S++ LV
Sbjct: 119 TFLSGISLQSLVDRHD 134
>gi|242278840|ref|YP_002990969.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
salexigens DSM 2638]
gi|242121734|gb|ACS79430.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
salexigens DSM 2638]
Length = 143
Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+L+ A+H++ P A IS +L KIL+ L ++G ++ RG
Sbjct: 1 MKLTTRSRYGARLLLDIALHSENGPVPSKDSARRENISLKYLEKILKILKESGYIKGKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++I++ + +A E + +C C C S+ A A +
Sbjct: 61 PNGGNVLTMAPEEISLGKLTEALEGEDKILDCDGDM-TTCTRAAVCLRRSIWDDANQAMY 119
Query: 120 DVLTQYSIECLVRNRS 135
+L Y++ L+++
Sbjct: 120 KMLDSYTLADLIKDAR 135
>gi|320334616|ref|YP_004171327.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
maricopensis DSM 21211]
gi|319755905|gb|ADV67662.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
maricopensis DSM 21211]
Length = 156
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + +A +S+ +L +I L +AG + +VRG
Sbjct: 1 MWISTKAQYGLRALVEIGRRPGEAVPLKDVAANQGLSQHYLEQIASNLRRAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L R D I DVV A E S C C G C + ++ A
Sbjct: 61 HGGYKLTRTPDLINTWDVVVAMEGSLAPVACVEEGH-SCEREGVCATQDLWQRVEGAVRG 119
Query: 121 VLTQYSIECLVRNRSSIK 138
VL ++ L+R I+
Sbjct: 120 VLGGTTLADLIRENERIE 137
>gi|187927978|ref|YP_001898465.1| BadM/Rrf2 family transcriptional regulator [Ralstonia pickettii
12J]
gi|187724868|gb|ACD26033.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia pickettii
12J]
Length = 197
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
GG L R AD +T+ D++ A +E +C G C +
Sbjct: 61 PGGGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHVGGHTGRCMTHDLWATL 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 NQKMVEYLDSVSLQNLVDQQRERQ 144
>gi|149927875|ref|ZP_01916126.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105]
gi|149823497|gb|EDM82728.1| hypothetical protein LMED105_11690 [Limnobacter sp. MED105]
Length = 163
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + +VE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALQQDTGPVSLAGISQRQNISLSYLEQLFSKLRRHELVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + R ++++ DV+ A +E +C K +C G C +
Sbjct: 61 PGGGYHIARALKEVSVADVILAVDEPLDATQC--GGKENCTDEGQCMTHDLWSSLNTKML 118
Query: 120 DVLTQYSIECLVRNRSS 136
+ L +++CLV
Sbjct: 119 EYLGSVTLQCLVEKHKQ 135
>gi|163797341|ref|ZP_02191294.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
proteobacterium BAL199]
gi|159177432|gb|EDP61988.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
proteobacterium BAL199]
Length = 158
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +R L+ A++ I +IA IS+ L K++ L + I+ + RG+
Sbjct: 1 MQLSQFTDYALRTLILVALNGSRRTTIDEIATRYGISKEHLRKVVHLLSRLSILHSTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL PA I I D+V+ATE F +AEC A CP+ G C L+ +LR A AF
Sbjct: 61 GGGLRLNIPAKAIRIGDIVRATEGGFAMAECLRADRAGHCPIDGVCRLSGILRGATAAFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L ++++ L+ +R S+ +
Sbjct: 121 TELDRHTLADLIADRDSLLQRL 142
>gi|152981590|ref|YP_001352941.1| iron-sulfur cluster assembly transcription factor
[Janthinobacterium sp. Marseille]
gi|151281667|gb|ABR90077.1| iron-sulfur cluster assembly transcription factor
[Janthinobacterium sp. Marseille]
Length = 157
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQDNGPVTLAGISQRQEISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP---LVGSCGLTSVLRKALN 116
GG L R A+ +T+ D++ A +E +C P G C +
Sbjct: 61 PGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKENCHSPEHEHGGRCMTHDLWATLNA 120
Query: 117 AFFDVLTQYSIECLVRNRSS 136
D L S++ LV +
Sbjct: 121 KMVDYLDSVSLKDLVDQQKQ 140
>gi|40063431|gb|AAR38242.1| rrf2 family protein [uncultured marine bacterium 580]
Length = 159
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + P ++S+I++ IS +L ++ L K G+V++VRG
Sbjct: 1 MKLTTKGRFAVTAMLDLALNEKNMPIKLSEISQRQSISLSYLEQLFGKLRKQGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + D I++ +++ + +E +C K +C C ++ +
Sbjct: 61 PGGGYLVAKNHDNISVKNIISSVDEQIDATQC--GGKENCNEGHQCITHNLWTTLNSKIL 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ LV+ + +
Sbjct: 119 DYLESTTLDELVKTQRN 135
>gi|223935874|ref|ZP_03627789.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
gi|223895475|gb|EEF61921.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
Length = 153
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R +Y +R L+ ++ D RI I++ I + FL +IL L AGIV++ RG
Sbjct: 1 MKLSLRGEYALRALIVLGLNYDQSVVRIQTISDQQNIPKRFLEQILNDLKTAGIVDSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKALN 116
GG RL + DQIT+ V++ E C + K CP CG+ S++++ +
Sbjct: 61 VSGGYRLGKAPDQITLATVIRYIEGPLAPVSCVSEKFYEKCSCPDESKCGIRSIMKEVRD 120
Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
A +L ++ L ++
Sbjct: 121 AIVKILDGVTVAELCDRVKQLQ 142
>gi|271501898|ref|YP_003334924.1| BadM/Rrf2 family transcriptional regulator [Dickeya dadantii
Ech586]
gi|270345453|gb|ACZ78218.1| transcriptional regulator, BadM/Rrf2 family [Dickeya dadantii
Ech586]
Length = 141
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R I I DVV+ E + C K C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGRDPSTIRIGDVVREL-EPLSLVNC---SKAFCHITPACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ +V + K+
Sbjct: 117 KELDNYTLADMVEQNPHLYKLL 138
>gi|328552565|gb|AEB23057.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens
TA208]
gi|328910965|gb|AEB62561.1| nitric oxide-responsive regulator [Bacillus amyloliquefaciens LL3]
Length = 144
Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/142 (38%), Positives = 86/142 (60%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +RVL++ A + + I +IA+ IS+ L K++ L + G VET+RG
Sbjct: 1 MKLTNYTDYSLRVLIFLASRPSEELSNIKEIADTYSISKNHLMKVIYRLGQLGYVETIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + I I +VV+ TE+ F + ECF S K C + +C L ++L +AL A+
Sbjct: 61 RGGGIRLGMIPEDINIGEVVRNTEDDFNIVECFDSQKNLCIISPACNLKNLLYEALQAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL +Y++ LV+N+ I ++
Sbjct: 121 AVLDKYTLRDLVKNKEEIMRLL 142
>gi|315651843|ref|ZP_07904846.1| iron-sulfur cluster assembly transcription regulator IscR
[Eubacterium saburreum DSM 3986]
gi|315485845|gb|EFU76224.1| iron-sulfur cluster assembly transcription regulator IscR
[Eubacterium saburreum DSM 3986]
Length = 146
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 81/139 (58%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R Y +++++ AI+ + P +I+Q++++ ISE +L +I+ L KA +V+++RG
Sbjct: 1 MKISTRGRYALKMMVEFAINMETPTKINQVSKSYGISEKYLEQIVSILSKAKLVKSIRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L +P ++ T+ ++++ TE S +C +C C ++ +K +A +
Sbjct: 61 QGGYLLVKPVEEYTVGEILRLTEGSLAPVDCL-DGNGNCVHSDFCVTQNLFKKVEDAINN 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
V+ S++ LV + I++
Sbjct: 120 VVDNISLKDLVTDELDIRR 138
>gi|218551448|ref|YP_002385240.1| transcriptional repressor NsrR [Escherichia fergusonii ATCC 35469]
gi|226737671|sp|B7LLW0|NSRR_ESCF3 RecName: Full=HTH-type transcriptional repressor nsrR
gi|218358990|emb|CAQ91650.1| DNA-binding transcriptional regulator [Escherichia fergusonii ATCC
35469]
gi|324112225|gb|EGC06203.1| transcriptional regulator [Escherichia fergusonii B253]
gi|325499713|gb|EGC97572.1| transcriptional repressor NsrR [Escherichia fergusonii ECD227]
Length = 141
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138
>gi|114331398|ref|YP_747620.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas
eutropha C91]
gi|114308412|gb|ABI59655.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha
C91]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 83/141 (58%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+L+Y + + + I++I++ IS + KI+ L + G +ET+RG+
Sbjct: 1 MKLTNYSDYALRILIYLGLKREKLSTITEISDCYRISRNHVVKIVHHLGQLGYLETLRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R + I I +V++ TE S + ECF+ + C + SC L S++ +AL AF
Sbjct: 61 HGGIRLARAPEMINIGEVMRHTETSMDLVECFSD-QNACIICDSCVLRSIIAEALAAFMT 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL Y++ L+ + +KK
Sbjct: 120 VLDSYTLADLMVPKRQLKKQL 140
>gi|118594588|ref|ZP_01551935.1| hypothetical protein MB2181_02930 [Methylophilales bacterium
HTCC2181]
gi|118440366|gb|EAV46993.1| hypothetical protein MB2181_02930 [Methylophilales bacterium
HTCC2181]
Length = 157
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+H D P ++ I+ IS +L ++ + + G+V++VRG
Sbjct: 1 MKLTTKGRFAVTAMLDLAMHETDSPVTLTAISARQSISLSYLEQLFSQMRRKGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + IT+ ++V A +E +C +C G C +
Sbjct: 61 PGGGYLSAQNHKDITVKNIVTAVDEKLDSTQC--GGSENCHEGGRCITHDLWVSLNTKVL 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L S++ L+ + K
Sbjct: 119 DYLDGLSLQDLIDGQKDRNK 138
>gi|260892331|ref|YP_003238428.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
KC4]
gi|260864472|gb|ACX51578.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
KC4]
Length = 154
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 2/143 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R LM A H P + +A ISE +L ++ L AG++ ++RG
Sbjct: 1 MKLSTRIRYGVRALMDIAEHGTAGPVSLKDVARRQGISEQYLEQLALLLKGAGLIRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +I + ++V+ + +C ++ C C + V R+A AF
Sbjct: 61 AHGGFVLSRQATEIRLSEIVEILGGPIKLVDCLYDQEV-CTRADCCAVRDVWREANEAFR 119
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+VL ++ LV + +
Sbjct: 120 NVLAAVTLADLVERQRKKLDHLS 142
>gi|193078481|gb|ABO13483.2| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978]
Length = 158
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 118 SLDQYTLGEVLQQPKS 133
>gi|327440415|dbj|BAK16780.1| predicted transcriptional regulator [Solibacillus silvestris
StLB046]
Length = 153
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDY +R LMY + + I +IA+A IS+ L K+ L K G +ET+RGR
Sbjct: 6 RLTVYTDYSLRTLMYLGVRGRENLVTIQEIADAYQISKNHLMKVTHDLGKIGYIETIRGR 65
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +QI I +VV+ TE+ F + ECF C + C L L++AL A+
Sbjct: 66 GGGIRLAVEPEQINIGEVVRKTEDDFHLVECFNPEGNLCKISPECRLKFALQEALKAYLA 125
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL Y++ ++ ++ + ++F
Sbjct: 126 VLDTYTLADVLVSKDILSELFG 147
>gi|171914811|ref|ZP_02930281.1| Putative transcriptional regulator [Verrucomicrobium spinosum DSM
4136]
Length = 151
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+L+Y H D ++AE +S L K+ + L + G + + RG
Sbjct: 1 MQLTYHTDYALRLLIYLLSHPDRNVSTREMAEFYGVSVNHLVKVAKSLTQGGWLVSSRGI 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L + + + D+V+ T E+ + ECF CP+ SC L +L +A AFFD
Sbjct: 61 GGGVMLAKHTPEAKVGDIVRYT-ENTDIVECFQPKTNTCPIHRSCDLKPILFQARRAFFD 119
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL +++ L R+ + + + +
Sbjct: 120 VLDSFTVRDLARHPNELLALTRS 142
>gi|172057713|ref|YP_001814173.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171990234|gb|ACB61156.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 148
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 54/141 (38%), Positives = 78/141 (55%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDYG+RVL+Y +H D + IA IS L K+ Q L K G VE+ RGR
Sbjct: 1 MRITQYTDYGLRVLIYLGLHRDEVTPMPAIANHYGISSNHLMKVTQQLTKLGYVESTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R ++I I VV+ E + ECFA+ C + C L +L +AL AF
Sbjct: 61 TGGLRLIRDPEEINIGKVVREM-EPMDIVECFAADGH-CVIEPQCQLKGILARALRAFIR 118
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Q+++ L++N + +F
Sbjct: 119 ELEQHTLAELLKNPYELNLLF 139
>gi|239908355|ref|YP_002955096.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
gi|239798221|dbj|BAH77210.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
Length = 155
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++ Y +R L A + R IA I + FL IL L + G V++ RG
Sbjct: 7 MWVTQKCQYALRALFELAKRQGEGAVRSVDIAANQAIPKRFLEVILHQLRQGGFVDSQRG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L RP IT+ D+++ + +C DC L GSC + +A A
Sbjct: 67 KEGGFFLSRPPANITVGDIIRFIDGPMTPVDCQLDRPHFDCALKGSCVFLGLWDEAREAL 126
Query: 119 FDVLTQYSIECLVRNRSSI 137
V +++ LV S++
Sbjct: 127 ERVYDTKTLQELVDKESAM 145
>gi|224543708|ref|ZP_03684247.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM
15897]
gi|224523361|gb|EEF92466.1| hypothetical protein CATMIT_02921 [Catenibacterium mitsuokai DSM
15897]
Length = 143
Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H+ + +IA ISE +L I++ L K VE +RG
Sbjct: 1 MMISTKGRYALRVMIDLAQHDRSKYIPLKEIAARQDISEKYLEIIIKSLSKKHFVEGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + ++ ++K TE + C A C C +
Sbjct: 61 KGGGYRLTHAPEDYSVASILKVTEGTLAPVSCLADECNTCERASYCNTLPMWTGLHKVIT 120
Query: 120 DVLTQYSIECLV 131
D L S+ LV
Sbjct: 121 DYLEGVSLSDLV 132
>gi|323486700|ref|ZP_08092021.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
gi|323692161|ref|ZP_08106404.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
gi|323400081|gb|EGA92458.1| transcriptional regulator [Clostridium symbiosum WAL-14163]
gi|323503735|gb|EGB19554.1| transcriptional regulator [Clostridium symbiosum WAL-14673]
Length = 145
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + Y +R+++ A+ D RI I+ ISE +L +I+ L KAG V +VRG
Sbjct: 1 MKVSTKGRYALRMMLDLALQGDEVVRIKDISLRQEISEKYLEQIVSVLKKAGYVNSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALN 116
+GG L + T+ +++ TE S C C C + +
Sbjct: 61 QGGYCLAGKPQEYTVGMILRLTEGSMAPVACVDTRMDGRGNTCSRAPGCTALKLWTMVDD 120
Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
A V+ + ++ +V+ +
Sbjct: 121 AVNGVIDKVTLADMVQWEREKE 142
>gi|295695250|ref|YP_003588488.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
2912]
gi|295410852|gb|ADG05344.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
2912]
Length = 155
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ RT+YG+R L+ A + P QIAE I E FL +I+ L +AGIV++VRG
Sbjct: 1 MKLSNRTEYGLRALVTLAERSGGAPMSTRQIAEIEGIPEPFLDQIMVLLRRAGIVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
GG L + D++++ +VV+ E S + C D C C V K
Sbjct: 61 VNGGFLLAQSPDRVSVGEVVRVLEGSLLLIGCVDEENGDMWCERTPICHTRKVWVKLNEG 120
Query: 118 FFDVLTQYSIECLVRNRSS 136
L ++ +V
Sbjct: 121 ITKALGSLTLAEVVETEEP 139
>gi|167836361|ref|ZP_02463244.1| Rrf2 family protein [Burkholderia thailandensis MSMB43]
Length = 165
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ +VV+ TE F + CFA +C + C L V A A
Sbjct: 61 NGGLRLNAQSATLTVGEVVRKTENDFALVGCFAGEAESHRNCVIQSVCRLKGVFVAAREA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145
>gi|299768660|ref|YP_003730686.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1]
gi|298698748|gb|ADI89313.1| hypothetical protein AOLE_02060 [Acinetobacter sp. DR1]
Length = 145
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGIRLNPDALNCNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 118 SLDQYTLGEVLQQSKS 133
>gi|50122544|ref|YP_051711.1| transcriptional repressor NsrR [Pectobacterium atrosepticum
SCRI1043]
gi|81644039|sp|Q6D125|NSRR_ERWCT RecName: Full=HTH-type transcriptional repressor nsrR
gi|49613070|emb|CAG76521.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 141
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPSGKMTSISEVTEVYGVSRNHMVKIINQLSRAGLVMAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DVV+ E + C C + +C L VL++A+ F
Sbjct: 61 KNGGIRLGKPAETIRIGDVVREL-EPLTLVNCSHEF---CHITAACRLKQVLQQAVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ +V+ + K+
Sbjct: 117 HELDQYTLADMVKENPPLYKLL 138
>gi|269217073|ref|ZP_06160927.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
exigua ATCC 700122]
gi|269129210|gb|EEZ60295.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
exigua ATCC 700122]
Length = 168
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H + + +IA ISE +L IL+ LVK G++ +RG
Sbjct: 26 MMISTKGRYALRVMVDLAEHMSCSYTPLKEIARRQEISEKYLESILKVLVKNGLLVGLRG 85
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R T+ ++++ TE C + C +GSC + R
Sbjct: 86 KGGGYRLTRDPSLYTVGEILRLTEGGLAQVPCLDEDESSCDRMGSCRTVEMWRGLDKVIN 145
Query: 120 DVLTQYSIECLVRN 133
D L ++ L
Sbjct: 146 DYLDGITVADLAER 159
>gi|119898309|ref|YP_933522.1| Rrf2 family protein [Azoarcus sp. BH72]
gi|119670722|emb|CAL94635.1| Rrf2 family protein [Azoarcus sp. BH72]
Length = 160
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A D P ++ IA+ IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLASRQADGPVTLAGIADRQKISLSYLEQLFGKLRRHKLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R IT+ D++ A +E +C K +C C + +
Sbjct: 61 PGGGYRLARDMAAITVADIIIAVDEPLDATQC--GGKQNCHDEHRCVTHDLWANLNKRMY 118
Query: 120 DVLTQYSIECLVRNR 134
L S+ LV+
Sbjct: 119 AYLDSVSLAALVQRE 133
>gi|145600842|ref|YP_001164918.1| transcriptional repressor NsrR [Yersinia pestis Pestoides F]
gi|162419331|ref|YP_001605273.1| transcriptional repressor NsrR [Yersinia pestis Angola]
gi|165926673|ref|ZP_02222505.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165936529|ref|ZP_02225097.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
str. IP275]
gi|166011855|ref|ZP_02232753.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166214016|ref|ZP_02240051.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167400661|ref|ZP_02306170.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167418774|ref|ZP_02310527.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167423241|ref|ZP_02314994.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170026007|ref|YP_001722512.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis YPIII]
gi|186893791|ref|YP_001870903.1| transcriptional repressor NsrR [Yersinia pseudotuberculosis PB1/+]
gi|294502487|ref|YP_003566549.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003]
gi|108777100|gb|ABG19619.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
Nepal516]
gi|108781808|gb|ABG15866.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
Antiqua]
gi|145212538|gb|ABP41945.1| transcriptional regulator, BadM/Rrf2 family [Yersinia pestis
Pestoides F]
gi|162352146|gb|ABX86094.1| nitrite-sensitive repressor NsrR [Yersinia pestis Angola]
gi|165915645|gb|EDR34254.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
str. IP275]
gi|165921296|gb|EDR38520.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
str. F1991016]
gi|165989214|gb|EDR41515.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166204811|gb|EDR49291.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962768|gb|EDR58789.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Orientalis
str. MG05-1020]
gi|167050029|gb|EDR61437.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057411|gb|EDR67157.1| nitrite-sensitive repressor NsrR [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752541|gb|ACA70059.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
pseudotuberculosis YPIII]
gi|186696817|gb|ACC87446.1| transcriptional regulator, BadM/Rrf2 family [Yersinia
pseudotuberculosis PB1/+]
gi|262360517|gb|ACY57238.1| hypothetical protein YPD4_0329 [Yersinia pestis D106004]
gi|262364465|gb|ACY61022.1| hypothetical protein YPD8_0332 [Yersinia pestis D182038]
gi|294352946|gb|ADE63287.1| hypothetical protein YPZ3_0377 [Yersinia pestis Z176003]
Length = 154
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG+
Sbjct: 15 QLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGK 74
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 75 NGGIRLGKPADQILIGDVVRQM-EPLTLVNCSSDF---CHITPACRLKQVLNQAVQSFLK 130
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ +V++ S + K+
Sbjct: 131 ELDNYTLADMVKDNSPLYKLL 151
>gi|325983001|ref|YP_004295403.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp.
AL212]
gi|325532520|gb|ADZ27241.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas sp.
AL212]
Length = 162
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + L+ A+ + +P ++ I++ IS +L ++ L ++ +V++VRG
Sbjct: 1 MRLTTKGRFAVTALLDLALQQSSHPITLADISQRQKISLSYLEQLFAKLRQSELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + D+++I D++ A +E +C K +C G C + K F
Sbjct: 61 PGGGYCLSKDLDKVSIADIILAVDEPIDATQC--GGKENCHNDGKCMTHDLWAKLNELIF 118
Query: 120 DVLTQYSIECLVRNR 134
+ L +++ LV N+
Sbjct: 119 EYLGAVTLKELVDNQ 133
>gi|309388970|gb|ADO76850.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium
praevalens DSM 2228]
Length = 148
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R ++ A H + I +I+E ISE +L ++ L KA +V++VRG
Sbjct: 1 MRVSTKGRYGLRAMVDLAEHEEGEAIPIRKISERQDISEQYLEQLFATLRKAELVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + I++ D++ E +C C + C + + + +A
Sbjct: 61 AHGGYMLNHEPEDISVADIITTLEGPIAPVDCVIESDF-CNYIDKCVIHGLWEELADAIN 119
Query: 120 DVLTQYSIECL 130
V+ ++ L
Sbjct: 120 GVIENMTLSDL 130
>gi|254510320|ref|ZP_05122387.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11]
gi|221534031|gb|EEE37019.1| Rrf2 family protein [Rhodobacteraceae bacterium KLH11]
Length = 148
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 78/143 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ +RVLMYCA H D ++IAE C ISE L +++ L + + T RGR
Sbjct: 1 MRITKRTNIAVRVLMYCAAHPDRLVTKAEIAEVCNISENHLAQVINQLSQLDYLSTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R ADQI I V + E + +AECFA CPL +C L L+ A F+
Sbjct: 61 NGGTVLARAADQIRIGSVFRHVEGALPIAECFADADNTCPLTDACRLRLALQDAAEVFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L +++ L+ + ++ +I
Sbjct: 121 SLDDITLDALICDNDNLLRILQP 143
>gi|209964918|ref|YP_002297833.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
gi|209958384|gb|ACI99020.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
Length = 156
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A + +P +++IA+ IS +L ++ L K G+V++VRG
Sbjct: 1 MRLSTKGRYAVMAMVDLAKSSKGHPVALAEIADRQEISLSYLEQLFAKLRKGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
GG L PA+ + I D++ A +E C A C C + + N
Sbjct: 61 PGGGYLLASPAEAMRISDIILAVDEPIRATRCAAHSPAGCRANKTRCLTHDLWEELGNQI 120
Query: 119 FDVLTQYSIECLVRNR 134
L+ S+ +V R
Sbjct: 121 HLYLSSVSLADVVERR 136
>gi|315186439|gb|EFU20199.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
thermophila DSM 6578]
Length = 155
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + Y IR ++ A+ + P I +IAE IS FL +I L K GI+++VRG
Sbjct: 1 MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKVGIIDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115
GG L RP + ITI D+ A +E + C C C L V ++
Sbjct: 61 PGGGFVLSRPLESITIKDIFDAVDEGLGITPCTEEEGKSGPELCEKAERCLLYEVWKETA 120
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
+ +++ L+
Sbjct: 121 SHLRQYFASITLKDLIDKAKK 141
>gi|158522270|ref|YP_001530140.1| BadM/Rrf2 family transcriptional regulator [Desulfococcus
oleovorans Hxd3]
gi|158511096|gb|ABW68063.1| transcriptional regulator, BadM/Rrf2 family [Desulfococcus
oleovorans Hxd3]
Length = 154
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 78/142 (54%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT ++ YG R+++ A++ + P R+S++++ IS +L K+++ + +AG+VE+ RG
Sbjct: 1 MRLTTKSRYGTRLILDLALYGKEEPVRLSEVSKRQGISLKYLEKLIRRMRRAGLVESSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
GG +L + + I++ D+V+ E + +C + C G C + + A
Sbjct: 61 PYGGYKLAKAPEDISVGDIVRVMEGGTSITDCSERESVCGVCNRAGECLSRHIWVETSKA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
F+ L ++ I L+ N ++I K
Sbjct: 121 MFNALDEFRIGDLIENSTTILK 142
>gi|307718953|ref|YP_003874485.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila
DSM 6192]
gi|306532678|gb|ADN02212.1| HTH-type transcriptional regulator IscR [Spirochaeta thermophila
DSM 6192]
Length = 155
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + Y IR ++ A+ + P I +IAE IS FL +I L KAGI+++VRG
Sbjct: 1 MRITTKGRYAIRAMVNLALSTESKPIPIKKIAEEESISPEFLEQIFFKLRKAGIIDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID----CPLVGSCGLTSVLRKAL 115
GG + RP + ITI D+ A +E + C C C L V ++
Sbjct: 61 PGGGFLISRPLESITIKDIFDAVDEGLGITPCTEEEGKSGTELCEKAERCLLYEVWKETA 120
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
+ +++ L+
Sbjct: 121 SHLRQYFASITLKDLIDKAKK 141
>gi|296100945|ref|YP_003611091.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055404|gb|ADF60142.1| transcriptional repressor NsrR [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 158
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + + IS++ E +S + KI+ L +AG V VRG+
Sbjct: 19 QLTSFTDYGLRALIYMASLPDGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRGK 78
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA I I DVV+ E + C + C + +C L L A+ +F
Sbjct: 79 NGGIRLGKPAQSIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSLAVQSFLK 134
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 135 ELDNYTLADLVEENQPLYKLL 155
>gi|39995641|ref|NP_951592.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
gi|39982404|gb|AAR33865.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
gi|298504663|gb|ADI83386.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
sulfurreducens KN400]
Length = 154
Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R + A ++ P ++ I+ IS +L +I Q L +AGI+++ RG
Sbjct: 1 MKLSTKSRYGLRAIFDIAYNSGSLPAQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKALNA 117
+GG L + ++IT+ DV+ ATE + EC + K +C G+C + +A
Sbjct: 61 PQGGYCLAKKPEEITVADVLLATERDINLVECTSKRKKKGECTFDGTCVTQELWCEAGAK 120
Query: 118 FFDVLTQYSIECLVRNRSSI 137
D + ++++ L +
Sbjct: 121 LLDFFSGFTVKDLCDRGQQM 140
>gi|21957349|gb|AAM84224.1|AE013666_4 hypothetical protein y0636 [Yersinia pestis KIM 10]
gi|45435245|gb|AAS60805.1| Predicted transcriptional regulator [Yersinia pestis biovar
Microtus str. 91001]
Length = 158
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 78/141 (55%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + + ISQ+ E +S + KI+ L + G+V VRG+
Sbjct: 19 QLTSFTDYGLRALIYMASLPDGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGK 78
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PADQI I DVV+ E + C + C + +C L VL +A+ +F
Sbjct: 79 NGGIRLGKPADQILIGDVVRQM-EPLTLVNCSSDF---CHITPACRLKQVLNQAVQSFLK 134
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ +V++ S + K+
Sbjct: 135 ELDNYTLADMVKDNSPLYKLL 155
>gi|262373529|ref|ZP_06066807.1| transcriptional regulator [Acinetobacter junii SH205]
gi|262311282|gb|EEY92368.1| transcriptional regulator [Acinetobacter junii SH205]
Length = 150
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 74/133 (55%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A ++ P I+ IA+ +S+ L KI+ + K + T RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSEIPYTIADIAKDLHVSQNHLVKIVHFMGKQQWIVTTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + ++V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGIRLNPSARTLRLGEIVRVLQGHQQIVEC---NTPPCVLRSQCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRN 133
L QY++ +V++
Sbjct: 118 SLDQYTLGEVVQH 130
>gi|194289262|ref|YP_002005169.1| transcriptional regulator [Cupriavidus taiwanensis LMG 19424]
gi|193223097|emb|CAQ69102.1| putative transcriptional regulator [Cupriavidus taiwanensis LMG
19424]
Length = 183
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 VEYLDSVSLKNLVDQQRERQ 140
>gi|284006631|emb|CBA71892.1| transcriptional regulator [Arsenophonus nasoniae]
Length = 140
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 79/142 (55%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + D I+++ +S + KI+ L + G+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPKDKMTNITEVTNVYGVSRNHMVKIINQLSRVGLVAAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L +PADQI I +VV+ E + C + + C + +C L +L +A++ F
Sbjct: 61 KNGGIYLGKPADQIRIGEVVR-LLEPLALVNCGSDY---CHITSACRLKQILNQAIDHFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L +Y++ L++N + K+
Sbjct: 117 NELDKYTLADLIKNNEPLYKLL 138
>gi|291327130|ref|ZP_06127096.2| transcriptional repressor NsrR [Providencia rettgeri DSM 1131]
gi|291311664|gb|EFE52117.1| transcriptional repressor NsrR [Providencia rettgeri DSM 1131]
Length = 142
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + I+++ E +S + KI+ L G ++ RG+
Sbjct: 4 QLTSFTDYGLRALIYLASLGEGKMTSITEVTEVYGVSRNHMVKIINQLSHLGYIKATRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L +PA+ I I DVV+A E + C C + +C L VL +A+ F
Sbjct: 64 NGGITLGQPAESIRIGDVVRAL-EPLTLVNCSGEF---CHITPACRLKGVLHQAIQQFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L QY++ +V++ S + ++
Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140
>gi|330003373|ref|ZP_08304594.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3]
gi|328537001|gb|EGF63292.1| HTH-type transcriptional repressor NsrR [Klebsiella sp. MS 92-3]
Length = 156
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG+
Sbjct: 17 QLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRGK 76
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA QI + DVV+ E + C + C + +C L L +A +F
Sbjct: 77 NGGIRLGKPAGQIRVGDVVRDL-EPLSLVNCSSEF---CHITPACRLKQALAEAAQSFLK 132
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 133 ELDNYTLADLVEKNQPLYKLL 153
>gi|163850401|ref|YP_001638444.1| rrf2 family transcriptional regulator [Methylobacterium extorquens
PA1]
gi|218528961|ref|YP_002419777.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Methylobacterium chloromethanicum CM4]
gi|240137477|ref|YP_002961948.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
AM1]
gi|254559655|ref|YP_003066750.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
DM4]
gi|163662006|gb|ABY29373.1| transcriptional regulator, Rrf2 family [Methylobacterium extorquens
PA1]
gi|218521264|gb|ACK81849.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
chloromethanicum CM4]
gi|240007445|gb|ACS38671.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
AM1]
gi|254266933|emb|CAX22732.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
DM4]
Length = 157
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 81/144 (56%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y + + I++IA A ISE L K++ L + G+++T+RGR
Sbjct: 1 MRLTRYTDYALRTLIYVGLREPKQSSIAEIARAYGISESHLTKVVHQLGRLGLIQTIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +P +I + VV+ TE+ + ECF++ C + C L L +AL AF
Sbjct: 61 GGGLRLAKPPAEIVVGAVVRETEDDLALVECFSAG--SCAITAPCRLRRALGEALAAFLA 118
Query: 121 VLTQYSIECLV--RNRSSIKKIFN 142
VL +Y++ L+ I ++
Sbjct: 119 VLDRYTLADLLGGAEGDEIARLLG 142
>gi|167644820|ref|YP_001682483.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
gi|167347250|gb|ABZ69985.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
Length = 151
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 61/142 (42%), Positives = 84/142 (59%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL++ A +D I +IA IS+ L K++Q L KAG V TVRGR
Sbjct: 1 MRLTRYTDYAMRVLLHLAARDDGLASIGEIAALYDISQNHLMKVVQDLGKAGFVRTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L RPADQI + VV+ TEE F + +C C + +C L VL +A AF
Sbjct: 61 GGGVALARPADQIVVGQVVRQTEEGFQLVDCSQ-----CLIAPACTLPRVLNEATAAFIG 115
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++E L+ R ++ +F
Sbjct: 116 VLEKYTLEDLLDRRHQMRALFG 137
>gi|188491831|ref|ZP_02999101.1| transcriptional repressor NsrR [Escherichia coli 53638]
gi|188487030|gb|EDU62133.1| transcriptional repressor NsrR [Escherichia coli 53638]
Length = 141
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + A I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 61 KNGGIRLGKSASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138
>gi|319762894|ref|YP_004126831.1| iron-sulfur cluster assembly transcription factor iscr
[Alicycliphilus denitrificans BC]
gi|330824973|ref|YP_004388276.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
denitrificans K601]
gi|317117455|gb|ADU99943.1| iron-sulfur cluster assembly transcription factor IscR
[Alicycliphilus denitrificans BC]
gi|329310345|gb|AEB84760.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
denitrificans K601]
Length = 178
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHDLWATLNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134
>gi|212709958|ref|ZP_03318086.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM
30120]
gi|212687367|gb|EEB46895.1| hypothetical protein PROVALCAL_01009 [Providencia alcalifaciens DSM
30120]
Length = 142
Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + I+Q+ E +S + KI+ L G V+ RG+
Sbjct: 4 QLTSFTDYGLRALIYLAALEKGQMTSITQVTEVYGVSRNHMVKIINQLSHLGYVKATRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L +PA+ I I DVV+A E + C C + +C L L+KA+ F
Sbjct: 64 NGGIALGQPAESIRIGDVVRAL-EPLTLVNCSGEF---CHITPACRLKGALQKAIQQFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L QY++ +V++ S + ++
Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140
>gi|113867177|ref|YP_725666.1| transcriptional regulator of iron sulfur clusterassembly (IscR)
[Ralstonia eutropha H16]
gi|113525953|emb|CAJ92298.1| transcriptional regulator of iron sulfur clusterassembly (IscR)
[Ralstonia eutropha H16]
Length = 184
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + +
Sbjct: 121 VEYLDSVSLKNLVDQQRERQ 140
>gi|169632345|ref|YP_001706081.1| hypothetical protein ABSDF0414 [Acinetobacter baumannii SDF]
gi|169151137|emb|CAO99806.1| conserved hypothetical protein [Acinetobacter baumannii]
Length = 148
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K G + T+RG
Sbjct: 4 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQGWIITIRGN 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 121 SLDQYTLGEVLQQPKS 136
>gi|120611113|ref|YP_970791.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
AAC00-1]
gi|326317578|ref|YP_004235250.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|120589577|gb|ABM33017.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
AAC00-1]
gi|323374414|gb|ADX46683.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 178
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134
>gi|148260795|ref|YP_001234922.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
JF-5]
gi|146402476|gb|ABQ31003.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
JF-5]
Length = 150
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT TDYG+R L++ A+ + I++IA + IS+ L K++ L +AG+VET+RGR
Sbjct: 1 MHLTMFTDYGLRTLIFLALRPERQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA I + +V++A E + C + C + G C L +V+ +A +AF
Sbjct: 61 HGGMRLARPAANIGLGEVIRAMEPGLALVPCQEGGR--CAIGGCCDLQAVMNEARDAFLG 118
Query: 121 VLTQYSIECLVR--NRSSIKKI 140
V +Y++ +V N ++++
Sbjct: 119 VFDRYTLADVVSPGNPRLMRRL 140
>gi|114331239|ref|YP_747461.1| transcriptional regulator, BadM/Rrf2 family protein [Nitrosomonas
eutropha C91]
gi|114308253|gb|ABI59496.1| transcriptional regulator, BadM/Rrf2 family [Nitrosomonas eutropha
C91]
Length = 155
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 65/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + L+ A H P ++ I+E IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTALLDIAIRHGGGPVALADISERQRISLSYLEQLFSKLRQRKLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + D++++ D++ A +E +C K +C C + K F
Sbjct: 61 PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWTKLNEIIF 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++E LV +S +
Sbjct: 119 DYLGNVTLERLVEEQSQRE 137
>gi|167759052|ref|ZP_02431179.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704]
gi|167663459|gb|EDS07589.1| hypothetical protein CLOSCI_01399 [Clostridium scindens ATCC 35704]
Length = 173
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 74/140 (52%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A +++ P I+ I+ ISE +L +++ L KAG+V+++RG
Sbjct: 22 MKLSTKGRYGLRAIIDLARYSEEEPVSINNISIRQDISERYLEQLVALLKKAGLVKSIRG 81
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
GG L + A++I++ DV++A E S +C A + C C V +K ++
Sbjct: 82 ATGGYVLAKRAEEISVGDVLRALEGSLEPVKCAAFYSDEGCMASDGCVTKYVWQKINDSI 141
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ + ++ LVR I
Sbjct: 142 NKTVDEIMLDELVRESKMIN 161
>gi|261856769|ref|YP_003264052.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Halothiobacillus neapolitanus c2]
gi|261837238|gb|ACX97005.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
neapolitanus c2]
Length = 167
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ P ++ IA+ +S +L ++ L +AG+V++VRG
Sbjct: 1 MRLTTKGRYAVTAMLDLALHDHGDPTALADIADRQELSLSYLEQLFAQLRRAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L RP+ +I + ++V A +E V C DC C +
Sbjct: 61 PGGGYQLTRPSTEINVAEIVIAVDEDVDVTRCSGRG--DCQNGHKCLSHDLWMGLSEQIR 118
Query: 120 DVLTQYSIECLVRNRSSI 137
LT + L+ N I
Sbjct: 119 SFLTGIHLADLLNNPELI 136
>gi|225025112|ref|ZP_03714304.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC
23834]
gi|224942073|gb|EEG23282.1| hypothetical protein EIKCOROL_02004 [Eikenella corrodens ATCC
23834]
Length = 173
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + P ++ I+ IS +L ++ L +AG+VE+VRG
Sbjct: 22 MRLTTKGRFAVTAMLDLALYGRENPVSLNAISGRQNISLSYLEQLFGKLRRAGLVESVRG 81
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I I +++ A E+ C + +C C +
Sbjct: 82 PGGGYLLSRQPGSINIAEIIYAAEDKLDATRC--GGQTNCHKGAPCLTHDLWESLNQTIQ 139
Query: 120 DVLTQYSIECLVRNRS 135
L S++ ++ R
Sbjct: 140 GYLNSVSLQDVLNKRD 155
>gi|121594494|ref|YP_986390.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
gi|222110831|ref|YP_002553095.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
gi|120606574|gb|ABM42314.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
gi|221730275|gb|ACM33095.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
TPSY]
Length = 178
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134
>gi|171463236|ref|YP_001797349.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
necessarius subsp. necessarius STIR1]
gi|171192774|gb|ACB43735.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
necessarius subsp. necessarius STIR1]
Length = 189
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 65/138 (47%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I++ IS +L ++ L + IVE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALREAHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNA 117
GG L RP+ ++++ D++ A +ES +C + D G C + +
Sbjct: 61 PGGGYTLARPSSEVSVADIIVAVDESLDATQCGGKGNCHTDEENHGRCMTHDLWSNLNSK 120
Query: 118 FFDVLTQYSIECLVRNRS 135
+ L+ S++ LV+ +
Sbjct: 121 MVEYLSSVSLKDLVQQQE 138
>gi|239815132|ref|YP_002944042.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
S110]
gi|319794405|ref|YP_004156045.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
EPS]
gi|239801709|gb|ACS18776.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
S110]
gi|315596868|gb|ADU37934.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
EPS]
Length = 178
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNTGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYSLGRKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134
>gi|160943690|ref|ZP_02090921.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii
M21/2]
gi|158444864|gb|EDP21867.1| hypothetical protein FAEPRAM212_01184 [Faecalibacterium prausnitzii
M21/2]
gi|295103977|emb|CBL01521.1| transcriptional regulator, BadM/Rrf2 family [Faecalibacterium
prausnitzii SL3/3]
Length = 143
Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A H ++ + ++A ISE +L IL+ LV+ G +E +RG
Sbjct: 1 MIVSTKGRYALRVMIDLAEHQSEKYVPLKEVAARQEISEKYLENILKVLVQNGFLEGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R DQ T+ +++ TE S C C + +C + + +
Sbjct: 61 KGGGYRLTRSPDQYTVSEILMLTEGSLAPVSCLTPGASACARMANCRTYEMWKGLNDLIS 120
Query: 120 DVLTQYSIECLV 131
D + ++ L
Sbjct: 121 DYFGKITLADLA 132
>gi|226322609|ref|ZP_03798127.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758]
gi|225208946|gb|EEG91300.1| hypothetical protein COPCOM_00381 [Coprococcus comes ATCC 27758]
Length = 147
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R + A + + P IS I+ ISE +L +++ L KAG+V+++RG
Sbjct: 1 MKISTKGRYGLRAFIDLACYGAEEPVSISSISARQEISERYLEQLMAKLKKAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
GG RL + A ++++ DV++A E A C A H D C + GSC V +K +
Sbjct: 61 AGGGYRLAKDAAEVSVGDVLRALEGDLEPATCAALHSEDSCEIQGSCITKYVWKKVNESM 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ I LV +KK
Sbjct: 121 AQTVDSIMINTLVEMNKEVKK 141
>gi|282600062|ref|ZP_05972854.2| transcriptional repressor NsrR [Providencia rustigianii DSM 4541]
gi|282566903|gb|EFB72438.1| transcriptional repressor NsrR [Providencia rustigianii DSM 4541]
Length = 142
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 73/141 (51%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + I+++ + +S + KI+ L G ++ VRG+
Sbjct: 4 QLTSFTDYGLRALIYLAALEKGKMTSITEVTDVYGVSRNHMVKIINQLSHLGYIKAVRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L +PA+ I I DVV+A E + C C + +C L L KA+ F
Sbjct: 64 NGGISLGQPAESIRIGDVVRAL-EPLTLVNCSGEF---CHITPACRLKGALNKAIQQFLQ 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L QY++ +V++ S + ++
Sbjct: 120 ELDQYTLADMVKDNSPLYQLL 140
>gi|198282957|ref|YP_002219278.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218666431|ref|YP_002425160.1| iron-sulfur cluster assembly transcription factor IscR
[Acidithiobacillus ferrooxidans ATCC 23270]
gi|198247478|gb|ACH83071.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218518644|gb|ACK79230.1| iron-sulfur cluster assembly transcription factor IscR
[Acidithiobacillus ferrooxidans ATCC 23270]
Length = 162
Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++ ++ I++ IS +L ++ L + G+VE+VRG
Sbjct: 1 MKLTTKGRYAVTAMLDLALNQRGGVVTVADISQRQQISVAYLEQLFGRLRRFGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
GG RL P +I + +V+A ES +C + C C + + N
Sbjct: 61 PGGGYRLAMPDSEIPLTRIVEAVNESISTTQCGGDPHLCCKGDGQQCLTHDLWEELGNRI 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L ++ LV+ +
Sbjct: 121 AEFLGGITLGQLVQKQ 136
>gi|83858482|ref|ZP_00952004.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633]
gi|83853305|gb|EAP91157.1| RrF2 family protein [Oceanicaulis alexandrii HTCC2633]
Length = 155
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A + + P + IA IS +L ++ L +AG+V++VRG
Sbjct: 1 MKLSTKGRYAVMAMVDLAQASLEKPVPLGDIASRQEISLSYLEQLFAKLRRAGVVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L RP + I D++ A EE V C C + +
Sbjct: 61 PGGGYKLARPLGETRIADIMLAVEEPVDVTRCQGKATGCLESGRRCITHDLWDELSRHIH 120
Query: 120 DVLTQYSIECLVRNR 134
L ++E ++ R
Sbjct: 121 LFLNDVTLEDVLERR 135
>gi|213158841|ref|YP_002320839.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
baumannii AB0057]
gi|215482177|ref|YP_002324359.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB307-0294]
gi|301345004|ref|ZP_07225745.1| hypothetical protein AbauAB0_02147 [Acinetobacter baumannii AB056]
gi|301512065|ref|ZP_07237302.1| hypothetical protein AbauAB05_10807 [Acinetobacter baumannii AB058]
gi|301596098|ref|ZP_07241106.1| hypothetical protein AbauAB059_09799 [Acinetobacter baumannii
AB059]
gi|332853133|ref|ZP_08434570.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013150]
gi|332868621|ref|ZP_08438277.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013113]
gi|213058001|gb|ACJ42903.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
baumannii AB0057]
gi|213988893|gb|ACJ59192.1| rrf2 family protein (transcriptional regulator) family protein
[Acinetobacter baumannii AB307-0294]
gi|332728802|gb|EGJ60161.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013150]
gi|332733298|gb|EGJ64492.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013113]
Length = 145
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 118 SLDQYTLGEVLQQPKS 133
>gi|170750041|ref|YP_001756301.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
radiotolerans JCM 2831]
gi|170656563|gb|ACB25618.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
radiotolerans JCM 2831]
Length = 163
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y +H + I+ IA A ISE L K++ L + G++ T+RGR
Sbjct: 1 MRLTRYTDYALRTLIYVGLHEPEQSSIAAIARAYGISENHLTKVVHQLGRLGLIRTIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P +I + VV+ TE+ + ECF C + C L VL +AL AF
Sbjct: 61 GGGLRLAMPPGEIVVGAVVRQTEDDLALVECFGGG--ACAITAPCRLRRVLGEALAAFLA 118
Query: 121 VLTQYSIECLVR--NRSSIKKIF 141
VL +Y++ L+ + +I +
Sbjct: 119 VLDRYTLADLLGSPDGDAIAALL 141
>gi|163857090|ref|YP_001631388.1| hypothetical protein Bpet2778 [Bordetella petrii DSM 12804]
gi|163260818|emb|CAP43120.1| unnamed protein product [Bordetella petrii]
Length = 179
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 5/144 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALN 116
GG L R A +T+ D++ A +E C H G C +
Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATNCGGKHDCTSGKDGKSGKCMTHELWTTLNR 120
Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 121 KMVDYLDSVSLQDLVDQQR-LRQL 143
>gi|301167694|emb|CBW27277.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 143
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IRVLMY I+++ ++I+ A IS L KI+ L K +++ +G
Sbjct: 1 MKLTTYTDYSIRVLMYLGINSERLCTSTEISAAYGISRNHLSKIIHQLSKLKYIQSYKGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
GG+ L I + +++ E F + ECF C + SC L S+L +L F
Sbjct: 61 SGGITLLEKPKNINLRKLIEQVEPDFDIVECFNQDSVFPCKITPSCKLKSILNSSLIEFL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L +Y++ ++ N+ +K
Sbjct: 121 KNLEKYTLADIIENKDELKSNL 142
>gi|253999553|ref|YP_003051616.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp.
SIP3-4]
gi|253986232|gb|ACT51089.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
SIP3-4]
Length = 162
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I+E IS +L ++ L ++G+V +VRG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + +I++ +++ A +E +C +C C +
Sbjct: 61 PGGGYLIAKKPGEISVANIIAAADELIDATQC--GGHKNCRGEKPCMTHELWSTLNAKIL 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
D L+ S+E LV ++S + I
Sbjct: 119 DYLSAVSLEDLVASQSDERAI 139
>gi|197287183|ref|YP_002153055.1| transcriptional repressor NsrR [Proteus mirabilis HI4320]
gi|226737673|sp|B4F272|NSRR_PROMH RecName: Full=HTH-type transcriptional repressor nsrR
gi|194684670|emb|CAR46611.1| putative transcriptional regulator [Proteus mirabilis HI4320]
Length = 142
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ + +S + KI+ L G VE +RG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I + +VV+A E + C A C + +C L VL +A+ F
Sbjct: 61 KNGGIRLGKPAADIIVGEVVRAL-EPLSLVNCSAEF---CHITPACRLKLVLNQAIEQFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L ++++ LV N S + K+
Sbjct: 117 KELDRHTLAELVENNSPLYKLL 138
>gi|78224182|ref|YP_385929.1| BadM/Rrf2 family transcriptional regulator [Geobacter
metallireducens GS-15]
gi|78195437|gb|ABB33204.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
metallireducens GS-15]
Length = 154
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 73/140 (52%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R + A ++ P+++ I+ IS +L +I Q L +AGI+++ RG
Sbjct: 1 MKLSTKSRYGLRAIFDIAYNSGNLPSQVQDISRRQGISPRYLEQIFQGLKRAGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--DCPLVGSCGLTSVLRKALNA 117
+GG L + ++IT+ DV+ ATE + EC K +C G+C + +A +
Sbjct: 61 PQGGYCLAKKPEEITVADVLLATERDMNLVECTNKRKKKVECGFDGTCVTQELWCEASSR 120
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+ + +++ L S+
Sbjct: 121 LVEYFSAITVKDLCDRGQSM 140
>gi|270158902|ref|ZP_06187558.1| rrf2 family protein [Legionella longbeachae D-4968]
gi|289166311|ref|YP_003456449.1| DNA-binding transcriptional regulator [Legionella longbeachae
NSW150]
gi|269987241|gb|EEZ93496.1| rrf2 family protein [Legionella longbeachae D-4968]
gi|288859484|emb|CBJ13439.1| DNA-binding transcriptional regulator [Legionella longbeachae
NSW150]
Length = 148
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 72/142 (50%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y + + I I +A IS + KI+ L K G+++T RG+
Sbjct: 1 MQLTQFTDYSLRALIYITLRKES-CTIKDITDAYTISNNHMVKIIHNLAKLGLIKTSRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + + I + ++ E F + CF K +C + C L +L +A AF
Sbjct: 60 GGGILIAVQPETINLGKLIAQLEPHFDLVPCFNKEKANCCIAPVCRLKGILHEAQTAFMK 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++ ++ N + + N
Sbjct: 120 VLERYTLADVLHNPKELSVLLN 141
>gi|260429411|ref|ZP_05783388.1| putative transcriptional regulator [Citreicella sp. SE45]
gi|260420034|gb|EEX13287.1| putative transcriptional regulator [Citreicella sp. SE45]
Length = 159
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 80/143 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ IRVLM+CA ++ ++IA C SE L +++ L + G + T RGR
Sbjct: 1 MRVTKRTNIAIRVLMHCAANSGRLVTKAEIARRCNASENHLAQVINQLAQLGYLHTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPADQI I DV +A E +AECFA CPL +C L L A +AF+
Sbjct: 61 HGGLELGRPADQIRIGDVFRALEAPVPLAECFADVDNTCPLTNACRLKIALTDAASAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L S++ LV + + + I
Sbjct: 121 TLDPISLDTLVCDNAPLMDILAP 143
>gi|227872831|ref|ZP_03991143.1| possible transcription regulator [Oribacterium sinus F0268]
gi|227841326|gb|EEJ51644.1| possible transcription regulator [Oribacterium sinus F0268]
Length = 174
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + L+ A P I ++AE IS +L +I+ +VK G +++VR
Sbjct: 28 MMISTKGRYALSTLIDIAEQEKKGNPVSIKEVAERQGISVKYLEQIIALMVKGGFLKSVR 87
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L + A I++ D++ A E + +C +C SC + ++ A
Sbjct: 88 GAKGGYLLLKEAKDISVGDILDAAEGTLSPVDCVKEG-SNCERSASCPTFPLYKEIDEAI 146
Query: 119 FDVLTQYSIECLVR 132
+ V+ +YS+E L++
Sbjct: 147 YAVVNRYSLEDLLQ 160
>gi|170766851|ref|ZP_02901304.1| transcriptional repressor NsrR [Escherichia albertii TW07627]
gi|170124289|gb|EDS93220.1| transcriptional repressor NsrR [Escherichia albertii TW07627]
Length = 162
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + IS++ + +S + KI+ L +AG V VRG+
Sbjct: 23 QLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYDVSRNHMVKIINQLSRAGYVTAVRGK 82
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 83 NGGIRLGKPASAIRIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLT 138
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 139 ELDNYTLADLVEENQPLYKLL 159
>gi|261342839|ref|ZP_05970697.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC
35316]
gi|288314881|gb|EFC53819.1| transcriptional repressor NsrR [Enterobacter cancerogenus ATCC
35316]
Length = 141
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPAGKMTSISEVTEVYGVSRNHMVKIINQLSRAGYVAAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I + DVV+ E + C ++ C + +C L L +A+ +F
Sbjct: 61 KNGGIRLGKPAQSIRVGDVVREL-EPLSLVNCSSAF---CHITPACRLKQALSQAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 117 MELDNYTLADLVEENQPLYKLL 138
>gi|117918506|ref|YP_867698.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
gi|117610838|gb|ABK46292.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
Length = 151
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRKTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + +++A E S +C + C +C L VL +A+ A+
Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+VL QYS++ +V NR+ + +
Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140
>gi|184159604|ref|YP_001847943.1| transcriptional regulator [Acinetobacter baumannii ACICU]
gi|239503240|ref|ZP_04662550.1| transcriptional regulator [Acinetobacter baumannii AB900]
gi|332876089|ref|ZP_08443873.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6014059]
gi|183211198|gb|ACC58596.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
gi|322509514|gb|ADX04968.1| transcriptional regulator [Acinetobacter baumannii 1656-2]
gi|323519534|gb|ADX93915.1| hypothetical protein ABTW07_3498 [Acinetobacter baumannii
TCDC-AB0715]
gi|332735707|gb|EGJ66750.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6014059]
Length = 145
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 118 SLDQYTLGEVLQQPKS 133
>gi|329115226|ref|ZP_08243981.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
gi|326695669|gb|EGE47355.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
Length = 169
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 7/146 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H + I +IA ISE L KI+ L + G V+T+RGR
Sbjct: 13 MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFVDTLRGR 72
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-----DCPLVGSCGLTSVLRKAL 115
GG+ L R + I I DVV+ TE+ + C + +C L +C L L +AL
Sbjct: 73 GGGLMLGRAPEDIRIGDVVRHTEDDMALVSCMSPSPGVPGSAECLLARACHLRGALGEAL 132
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
+AF VL ++ ++ ++I
Sbjct: 133 DAFMAVLDSRTLADMLHTPE--RQIL 156
>gi|114045552|ref|YP_736102.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-7]
gi|113886994|gb|ABI41045.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-7]
Length = 151
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + +++A E S +C + C +C L VL +A+ A+
Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVQAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+VL QYS++ +V NR+ + +
Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140
>gi|224825697|ref|ZP_03698801.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
gi|224601921|gb|EEG08100.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
Length = 150
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 77/142 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+MY A+ + I++IA+A IS L K++ L + G + TVRG+
Sbjct: 1 MRLTAFTDYCLRVMMYSALAGERLVTINEIAQAYGISASHLTKVVFFLGQHGYLTTVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL Q+ + +V+A E + ECF C + +C L +VL A AF+
Sbjct: 61 GGGMRLADDPQQVNLGKLVRAAETDNVLVECFDPQHSQCRIASACRLMNVLHAAQEAFYG 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L+++++ L+ + + +
Sbjct: 121 ELSRHTLADLLVQPAGLGRALG 142
>gi|209884294|ref|YP_002288151.1| putative transcriptional regulator [Oligotropha carboxidovorans
OM5]
gi|209872490|gb|ACI92286.1| putative transcriptional regulator [Oligotropha carboxidovorans
OM5]
Length = 149
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 50/131 (38%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+LMY A ND I + AEA IS L K+ L +AG ++ RGR
Sbjct: 1 MRLTNFSDYALRILMYAAAQNDRLITIEETAEAYGISRAHLMKVANQLTRAGYLKATRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + D+I + DV++ATE F + EC ++ + C + C L L +AL AF +
Sbjct: 61 SGGLALAKRPDRIRLSDVLRATEPDFSLVECLTTNNL-CVISPRCRLRGALNEALAAFLE 119
Query: 121 VLTQYSIECLV 131
L Y+++ L+
Sbjct: 120 TLDGYTLDDLI 130
>gi|317405206|gb|EFV85545.1| DNA-binding protein [Achromobacter xylosoxidans C54]
Length = 180
Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKA 114
GG L R A +T+ D++ A +E C K DC C +
Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 119 NRKMVDYLDSVSLQDLVDQQR-VRQL 143
>gi|293606133|ref|ZP_06688498.1| iron-sulfur cluster assembly transcription factor IscR
[Achromobacter piechaudii ATCC 43553]
gi|292815588|gb|EFF74704.1| iron-sulfur cluster assembly transcription factor IscR
[Achromobacter piechaudii ATCC 43553]
Length = 180
Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKA 114
GG L R A +T+ D++ A +E C K DC C +
Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 119 NRKMVDYLDSVSLQDLVDQQR-VRQL 143
>gi|237749286|ref|ZP_04579766.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
gi|229380648|gb|EEO30739.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
Length = 139
Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 82/140 (58%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++TDY +R+LMY A H + I++IAE IS L KI+ L + +E++RG
Sbjct: 1 MQLTQQTDYALRILMYAAAHPERLVNITEIAELYGISRSHLTKIVANLASSQYLESIRGN 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG+RL +PA +I I ++++ E + +C + + C + +C L V +A +AF
Sbjct: 61 KGGIRLNKPASEINIGEIIRRF-EPLAIVDCMSKTR-SCVITPNCKLKHVFFEATDAFLK 118
Query: 121 VLTQYSIECLVRNRSSIKKI 140
QY++ ++ N + I+++
Sbjct: 119 TFDQYTLADML-NPTLIRQL 137
>gi|77919328|ref|YP_357143.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
gi|77545411|gb|ABA88973.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
carbinolicus DSM 2380]
Length = 155
Score = 123 bits (310), Expect = 5e-27, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 66/141 (46%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A + + P +I I+ IS +L +I Q KAGI+++ +G
Sbjct: 1 MRLSTKSRYGLRALFDIAYNAGNQPAQIKDISRRQDISPRYLEQIFQSFKKAGILKSKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
+GG L R DQIT+ +V+A E + C K C + G C +V +A
Sbjct: 61 PQGGYFLTRKPDQITVRQIVEAAEGDTLLVACACETPKGKGCCTMNGQCVTQTVWFEATE 120
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
L +++ L +
Sbjct: 121 HLNTFLDSLTLQTLCERGQDM 141
>gi|303249415|ref|ZP_07335637.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
gi|302489175|gb|EFL49145.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
Length = 150
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++ Y +R L A D P IAE I + FL IL L + G V+ RG
Sbjct: 1 MPVTQKCQYALRALFELARRKGDGPIPAGGIAERQAIPKRFLEVILHQLRQGGFVDAQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L RPA+ +T+ +V++ + +C DCPL G C V ++A A
Sbjct: 61 KEGGFYLARPAETVTVGEVIRFMDGPISPVDCHRERPGHDCPLRGGCVFRDVWQEAQAAL 120
Query: 119 FDVLTQYSIECLVRNRS 135
V ++ LV
Sbjct: 121 EKVYDARNLRDLVEEDR 137
>gi|226941780|ref|YP_002796854.1| transcriptional regulator [Laribacter hongkongensis HLHK9]
gi|226716707|gb|ACO75845.1| Predicted transcriptional regulator [Laribacter hongkongensis
HLHK9]
Length = 159
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I+E IS +L ++ L +A +VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLALRQHKGPVTLAGISERQDISLSYLEQLFGKLRRAELVESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT+ D++ A +E +C + DC C + +
Sbjct: 61 PGGGYCLARQPAAITVADIIIAVDEPLDATQC--GGREDCHDSRRCMTHDLWIDLNRTIY 118
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ L+ + +
Sbjct: 119 AYLEGITLGSLMDRQRA 135
>gi|289423544|ref|ZP_06425345.1| RRF2-family transcriptional regulator [Peptostreptococcus
anaerobius 653-L]
gi|289156046|gb|EFD04710.1| RRF2-family transcriptional regulator [Peptostreptococcus
anaerobius 653-L]
Length = 152
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG++ + A+ P + IA+ IS+ +L +I L KA +V++VRG
Sbjct: 1 MKLSTKGKYGLKAMFELALSKTGEPVSLKHIAKQQNISDQYLEQIFSSLKKAKLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +IT+ D++K E +C K C SC V K ++
Sbjct: 61 AQGGYMLSKDPKEITVADILKVLEGDMAFTDCLLD-KDACENFNSCATKYVWAKIKDSIE 119
Query: 120 DVLTQYSIECLVRNRSS 136
V S++ +V + S
Sbjct: 120 QVTMAISLQDMVDDYES 136
>gi|281355615|ref|ZP_06242109.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
ATCC BAA-548]
gi|281318495|gb|EFB02515.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
ATCC BAA-548]
Length = 148
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+R+L+ A++ D P I +IA ISE ++ +++ L KAG V +VR
Sbjct: 1 MKISTKGRYGLRILLDIALYRVGDKPRMIREIASNQEISEKYISRLIIELRKAGFVRSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L R + I++LDV++ E + +C S C C + +
Sbjct: 61 GVNGGYTLTRKPEDISVLDVLETMEGPVAIVDCMNSSGEVCRRKSQCPTQRMWTEINQKI 120
Query: 119 FDVLTQYSIECLVR 132
Y+++ LV
Sbjct: 121 RSAFAAYTLKDLVE 134
>gi|73540759|ref|YP_295279.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
JMP134]
gi|72118172|gb|AAZ60435.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
JMP134]
Length = 186
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ D P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQDQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A+ +T+ D++ A +E +C + G C +
Sbjct: 61 PGGGYSLARKAEDVTVADIIIAVDEPLDATQCGGKGNCNGDDGSGRCMTHELWATLNQKM 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L S++ LV + + +
Sbjct: 121 VEYLDSVSLKNLVDQQRAKQ 140
>gi|187478009|ref|YP_786033.1| DNA-binding protein [Bordetella avium 197N]
gi|115422595|emb|CAJ49120.1| putative DNA-binding protein [Bordetella avium 197N]
Length = 177
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKA 114
GG L R A +T+ D++ A +E C K DC C +
Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 119 NRKMVDYLDSVSLQDLVDQQR-LRQL 143
>gi|113968387|ref|YP_732180.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. MR-4]
gi|113883071|gb|ABI37123.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. MR-4]
Length = 151
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+ D RI++I E +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + +++A E S +C + C +C L VL +A+ A+
Sbjct: 61 GKMGGFRLGKPASEINLGQLIRALENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+VL QYS++ +V NR+ + +
Sbjct: 118 LNVLDQYSLQDIVSNRNELLALL 140
>gi|298291178|ref|YP_003693117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Starkeya novella DSM 506]
gi|296927689|gb|ADH88498.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
506]
Length = 146
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 58/141 (41%), Positives = 87/141 (61%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RV+++ H+D I +IA +S L K++Q L AG VETVRGR
Sbjct: 1 MKLTRYTDYAMRVMIHLGTHDDRLASIPEIARIYDLSHSNLMKVVQDLGHAGYVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RPADQI + ++V+ TE F + +C C + +CGL +L +A AF
Sbjct: 61 HGGVRLARPADQINLGELVRHTEAGFDLVDCQG-----CLIAPACGLPGILAEATRAFLS 115
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL +Y++ L+ RS+++++F
Sbjct: 116 VLDKYTVADLLGRRSALRQLF 136
>gi|126665836|ref|ZP_01736817.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17]
gi|126629770|gb|EBA00387.1| hypothetical protein MELB17_04687 [Marinobacter sp. ELB17]
Length = 145
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 53/132 (40%), Positives = 77/132 (58%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL+Y A D I +A+A IS+ L K++ L G +ETVRG+
Sbjct: 1 MHITRYTDYSLRVLVYLAACGDRLVTIQDVADAYDISKNHLMKVVHQLNLKGYIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R I I +V+ TE + ECF+++ C + C L S+LR+AL AF
Sbjct: 61 NGGMRLRRQPSSINIGALVRDTEPDLNLVECFSANNQCC-ITPVCSLQSMLREALQAFLA 119
Query: 121 VLTQYSIECLVR 132
L Y++ +VR
Sbjct: 120 TLDTYTLADVVR 131
>gi|189425987|ref|YP_001953164.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacter lovleyi SZ]
gi|189422246|gb|ACD96644.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ]
Length = 158
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 77/144 (53%), Gaps = 7/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L A H P +I I+ IS +L +I Q L KAGI+++ RG
Sbjct: 1 MRLSTKSRYGLRALFDIAYHTGTAPAQIQDISRRQLISPRYLEQIFQNLKKAGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH------KIDCPLVGSCGLTSVLRK 113
+GG L R DQIT+L+V++ATE+ + +C K +CP G+C +V +
Sbjct: 61 PQGGYTLARTPDQITVLEVIRATEQDALLVDCAGQGKKTRRRKNECPFEGNCVTQTVWKD 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
A + ++ + ++E L + +
Sbjct: 121 ANDLLAELFGKLTLETLCQRGQEM 144
>gi|241763770|ref|ZP_04761817.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
gi|241366989|gb|EER61385.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
Length = 178
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARKAADITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWASLNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV +
Sbjct: 119 VEFLDSVTLQKLVDEQ 134
>gi|34496550|ref|NP_900765.1| hypothetical protein CV_1095 [Chromobacterium violaceum ATCC 12472]
gi|34102404|gb|AAQ58770.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 164
Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I+E IS +L ++ L +A +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMREEGGPVTLAGISERQSISLSYLEQLFGKLRRAELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + I++ D++ A +E +C + +C C + F
Sbjct: 61 PGGGYTLAKQICDISVADIIVAVDEPVDATQC--GGRENCRGSQRCMTHDLWTNLNVTIF 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L++ S+ LV + + ++
Sbjct: 119 DYLSKVSLASLVEEQHAKEQ 138
>gi|239906274|ref|YP_002953014.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
gi|239796139|dbj|BAH75128.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
Length = 145
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG+R+L+ A+H D P RI IA+ IS +L ++++ L KAG + + RG
Sbjct: 1 MQLTTRSRYGLRMLLDIALHGDEGPVRIQDIAKRRGISVKYLEQLIRALKKAGFINSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L PA+ I + DVV+A E + EC + ++ C + C + +A + F
Sbjct: 61 PKGGHVLATPAEAIRVGDVVRALESRPELTECVGNPEV-CMISTDCVTRQIWARATESIF 119
Query: 120 DVLTQYSIECLV 131
L + L+
Sbjct: 120 RELDAIHLSDLL 131
>gi|85714309|ref|ZP_01045297.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A]
gi|85698756|gb|EAQ36625.1| hypothetical protein NB311A_15197 [Nitrobacter sp. Nb-311A]
Length = 165
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 55/136 (40%), Positives = 77/136 (56%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT DY +R+LMY A H D I + A IS L K+ L +AG ++ VRGR
Sbjct: 24 MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 83
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + ++I + DV+ ATE F + ECF+S CP+ SC L + LR+ALNAF
Sbjct: 84 SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSS-NNRCPITSSCRLRAPLREALNAFTT 142
Query: 121 VLTQYSIECLVRNRSS 136
L +Y++ L+ N
Sbjct: 143 TLDRYTLADLILNPKD 158
>gi|157377604|ref|YP_001476204.1| BadM/Rrf2 family transcriptional regulator [Shewanella sediminis
HAW-EB3]
gi|157319978|gb|ABV39076.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sediminis
HAW-EB3]
Length = 151
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+GIR LMY AI D RIS+I E +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGIRTLMYLAIQPDREELFRISEITEVFELSPNHVSKIVHHLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL I + +V+ E S +C + C SC L VL A+ A+
Sbjct: 61 GKSGGFRLGMSPKDINVGKLVRVLENSLAPIDCSKPY---CRFTPSCQLKGVLADAVAAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
V+ Y++E +V N+ +K++
Sbjct: 118 LAVIDAYTLEDIVSNKDELKQLL 140
>gi|269836430|ref|YP_003318658.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter
thermophilus DSM 20745]
gi|269785693|gb|ACZ37836.1| transcriptional regulator, BadM/Rrf2 family [Sphaerobacter
thermophilus DSM 20745]
Length = 143
Score = 123 bits (310), Expect = 7e-27, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +YG+R ++ A + P ++ IA + +L +++ PL +AG+V + RG
Sbjct: 1 MKVSTRGEYGMRAMVSLARMYGQGPVPLAAIASDSAVPAAYLEQLMGPLRRAGLVTSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116
GG L RP ++ + +V + E C + D CP++ C +V K +
Sbjct: 61 AHGGYELARPPAEVRVGEVYRVMEGPIAPMACVSEDSGDEDLCPIIDGCATRAVWIKVRD 120
Query: 117 AFFDVLTQYSIECLVRNRSS 136
+ L ++ L+ ++
Sbjct: 121 SIAAALDSTTLADLLDQHAA 140
>gi|298243979|ref|ZP_06967786.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297557033|gb|EFH90897.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 145
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + DYG+R ++ A + P S IA I E +L +IL L K G+V++VRG
Sbjct: 1 MKLTMKGDYGLRAMLDMAAYYGQGPIESSDIASRQYIPEQYLDQILMVLRKEGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + QIT+ V++A E EC + C L C L V +K A
Sbjct: 61 PKGGHMLAKAPGQITMAQVMQALEGYVPPMECLPNPDF-CKLSPGCALREVWQKIDAATQ 119
Query: 120 DVLTQYSIECLVRNRS 135
++L +IE L +
Sbjct: 120 EILNSTTIEELAQRHR 135
>gi|313201580|ref|YP_004040238.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688]
gi|312440896|gb|ADQ85002.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
MP688]
Length = 162
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ + P ++ I+E IS +L ++ L ++G+V +VRG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMAEENRPVTLAGISERQNISLSYLEQLFSRLRRSGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + +I++ +++ A +E +C +C C +
Sbjct: 61 PGGGYLIAKKPGEISVANIIAAADELIDATQC--GGHKNCRGEKPCMTHELWSTLNAKIL 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
D L+ S+E LV ++S + I
Sbjct: 119 DYLSAVSLEDLVASQSDERAI 139
>gi|293610818|ref|ZP_06693118.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827162|gb|EFF85527.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 145
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 74/136 (54%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGIRLNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 118 SLDQYTLGEVLQQSKS 133
>gi|153814361|ref|ZP_01967029.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756]
gi|317500076|ref|ZP_07958311.1| iron-sulfur cluster assembly transcription factor IscR
[Lachnospiraceae bacterium 8_1_57FAA]
gi|331087700|ref|ZP_08336626.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145848757|gb|EDK25675.1| hypothetical protein RUMTOR_00571 [Ruminococcus torques ATCC 27756]
gi|316898561|gb|EFV20597.1| iron-sulfur cluster assembly transcription factor IscR
[Lachnospiraceae bacterium 8_1_57FAA]
gi|330409681|gb|EGG89117.1| hypothetical protein HMPREF1025_00209 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 143
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RV++ A + + + +A IS +L +IL L K G++E V G
Sbjct: 1 MLISTKGRYALRVMIDLAQNKESGHVAMKIVAARQGISLKYLERILPVLTKNGLIEGVHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RLCR + + ++++ TE + C + C C +
Sbjct: 61 KGGGYRLCREPKEYKVGEILRLTEGNLAPVSCLECNAPVCERKDQCHTIGMWTDFHKMIN 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D ++E L+ + + +
Sbjct: 121 DYFDGITLEDLMHRNTELSE 140
>gi|304393239|ref|ZP_07375167.1| protein Aau3 [Ahrensia sp. R2A130]
gi|303294246|gb|EFL88618.1| protein Aau3 [Ahrensia sp. R2A130]
Length = 158
Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats.
Identities = 60/140 (42%), Positives = 90/140 (64%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TK+T+Y +R+LMYCA H R+S +A +S+ F+ K+LQ KAG V+T+RGR
Sbjct: 1 MQITKQTNYALRMLMYCAAHEGS-VRLSDVATFYGLSQSFMHKVLQTTSKAGFVKTMRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RP ++IT+ +VV+A E+ F +AECF CPL SCGL +AL+AF
Sbjct: 60 SGGLMLARPPEEITVGEVVRAVEDRFEMAECFRED-TTCPLEQSCGLNGAFHEALDAFLT 118
Query: 121 VLTQYSIECLVRNRSSIKKI 140
VL +++I + R++I +
Sbjct: 119 VLDKHTIADITNERANINVL 138
>gi|188535079|ref|YP_001908876.1| transcriptional repressor NsrR [Erwinia tasmaniensis Et1/99]
gi|188030121|emb|CAO98007.1| Putative negative regulator [Erwinia tasmaniensis Et1/99]
Length = 141
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L +AG V +RG
Sbjct: 1 MQLTSFTDYGLRALIYLASLPAGRMTSISEVTEIYGVSRHHMVKIINQLSRAGYVSALRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L +PA +I I VV+ E + C + C + +C L + L +A+ +F
Sbjct: 61 KNGGILLGKPAAEIVIGQVVRTL-EPLQLVNCSSEF---CHITAACRLKTALHEAVQSFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ LV + + KI
Sbjct: 117 RELDQYTLADLVEDNHPLYKIL 138
>gi|56479101|ref|YP_160690.1| iron-sulphur cluster assembly transcription factor IscR
[Aromatoleum aromaticum EbN1]
gi|56315144|emb|CAI09789.1| Iron-sulphur cluster assembly transcription factor IscR
[Aromatoleum aromaticum EbN1]
Length = 160
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ IAE IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLASRQTEGPVTLAGIAERQKISLSYLEQLFGKLRRHKLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R +IT+ DV+ A +E +C + +C C + +
Sbjct: 61 PGGGYRLARDMSRITVADVIVAVDEPLDATQC--GGRQNCHDEQRCLTHDLWANLNKRMY 118
Query: 120 DVLTQYSIECLV 131
+ L ++ LV
Sbjct: 119 EYLDSVTLAALV 130
>gi|217968854|ref|YP_002354088.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thauera sp. MZ1T]
gi|217506181|gb|ACK53192.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
Length = 163
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T+ TDY +R+LMY + I ++AE IS L K++ LV G V+ RG+
Sbjct: 1 MNITQHTDYALRLLMYLGTCTERRVTIKEVAERFDISRSHLMKVVTGLVAKGFVDGARGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R A QI + DVV+ E SF + ECF S C L +C L L AL AFF
Sbjct: 61 GGGLRLARAATQIGLGDVVRGMEPSFELVECFGSGSH-CLLDPACRLKGALAGALQAFFA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L + ++ L+ + + +
Sbjct: 120 ALDRLTLADLIGDDGQLHAVLG 141
>gi|90019750|ref|YP_525577.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
degradans 2-40]
gi|89949350|gb|ABD79365.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
degradans 2-40]
Length = 146
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 88/143 (61%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVLMY + + I +IA++ IS+ L K++Q L G ++ +RG+
Sbjct: 1 MHITRFTDYSLRVLMYAGLRDGELCTIQEIADSYNISKNHLMKVVQELNIKGYLKAIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA++I + +V+ TE+ F + ECF+ C + +C L S+L +ALNAF
Sbjct: 61 NGGLTLGRPANEINLGSLVRDTEQDFNIVECFSEAD-TCTITPNCKLKSILAQALNAFLG 119
Query: 121 VLTQYSIECLVRNRS--SIKKIF 141
VL Y++E L+ R+ + K+
Sbjct: 120 VLDDYTLEDLLAPRTKAPLMKLL 142
>gi|300721495|ref|YP_003710770.1| hypothetical protein XNC1_0462 [Xenorhabdus nematophila ATCC 19061]
gi|297627987|emb|CBJ88536.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
Length = 139
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ E +S + KI+ L G+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSHLGLVNAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L +PA +I I DVV++ E + C A C + +C L SVL +A+ F
Sbjct: 61 KNGGISLGKPAREIRIGDVVRSL-EPLALVNCSA-----CQITSACRLKSVLNQAVENFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L ++++ +V++ S + ++
Sbjct: 115 EELDKHTLADMVKDNSPLYQLL 136
>gi|260557021|ref|ZP_05829238.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
gi|260409627|gb|EEX02928.1| transcriptional regulator [Acinetobacter baumannii ATCC 19606]
Length = 148
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 4 MQLNKFTDYALRILMYVARPSDTPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 121 SLDQYTLGEVLQQPKS 136
>gi|320539671|ref|ZP_08039335.1| putative DNA-binding transcriptional regulator [Serratia symbiotica
str. Tucson]
gi|320030283|gb|EFW12298.1| putative DNA-binding transcriptional regulator [Serratia symbiotica
str. Tucson]
Length = 141
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + D ISQ+ E +S + KI+ L + G V +RG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPPDKMTSISQVTEVYGVSRNHMVKIINQLSRVGFVTAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +P + I + DVV+A E + C + C + +C L VL + + F
Sbjct: 61 KNGGIRLSKPGETIRLGDVVRAL-EPLSLVNCHSDF---CHISPACRLNQVLHQGVQNFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L +++ +V S + K+
Sbjct: 117 EELNNHTLADMVEGNSLLYKLL 138
>gi|260599473|ref|YP_003212044.1| transcriptional repressor NsrR [Cronobacter turicensis z3032]
gi|260218650|emb|CBA33971.1| HTH-type transcriptional repressor nsrR [Cronobacter turicensis
z3032]
Length = 141
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + IS++ E +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+ E + C ++ C + +C L VL A+ F
Sbjct: 61 KNGGIRLGKPAATIRIGDVVREL-EPLSIVNCSSAF---CHITPACRLKQVLGDAVARFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV+ + K+
Sbjct: 117 QELDNYTLADLVQENQPLYKLL 138
>gi|300022521|ref|YP_003755132.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Hyphomicrobium denitrificans ATCC 51888]
gi|299524342|gb|ADJ22811.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 145
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 57/143 (39%), Positives = 85/143 (59%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +RVLMY D I +IA+ ISE L K++ L + G V+T+RGR
Sbjct: 1 MRLTVHSDYALRVLMYLGAREDRLATIQEIAKVYAISENHLMKVVNKLARHGFVKTLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA+ +TI +V++ EE F V ECF + C + SC L LR+A++AF
Sbjct: 61 GGGLRLGRPAEDLTIGEVLRVVEEDFHVVECFGESNM-CRISQSCRLRLALRRAIDAFLA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L ++++ ++ NR+SI +
Sbjct: 120 ELDEWTLADILSNRNSILRELRP 142
>gi|162146319|ref|YP_001600778.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
gi|209543678|ref|YP_002275907.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|161784894|emb|CAP54437.1| putative transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531355|gb|ACI51292.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 146
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y D I +IA+A ISE L KI+ L + G +ETVRGR
Sbjct: 1 MRLTLHTDYALRTLIYLGTRTDRLVSIHEIAQAYGISENHLMKIIHRLGRGGFIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKA 114
GG+RL R AD I I DVV+ TEE + C C L +C L VL +A
Sbjct: 61 GGGLRLARAADAIRIGDVVRYTEEDMALVGCMQGDDPSAPDARPCVLADACRLKGVLGEA 120
Query: 115 LNAFFDVLTQYSIECLVRNRS 135
L AF VL +Y++ ++ R+
Sbjct: 121 LGAFTAVLDRYTLADMITERT 141
>gi|160899434|ref|YP_001565016.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
SPH-1]
gi|160365018|gb|ABX36631.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
SPH-1]
Length = 178
Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARKAGDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWAALNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV +
Sbjct: 119 VEFLDSVTLQKLVDEQ 134
>gi|291532767|emb|CBL05880.1| transcriptional regulator, BadM/Rrf2 family [Megamonas hypermegale
ART12/1]
Length = 156
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R ++ ++N P + IA IS ++ +I+ L+KA +V++VRG
Sbjct: 1 MKVSTKGRYALRTMIDLTVNNTGNPIPLKDIATRQNISLKYMEQIISLLIKAKLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + Q T D+++A E C +C C +
Sbjct: 61 NNGGYLLAKSSMQYTAGDILRAAEGDMAPIACIEKDHCNCNRADYCSVLPFWLGLNKVIN 120
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ L R
Sbjct: 121 GYLDSVTLSELARQAKE 137
>gi|92114964|ref|YP_574892.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter
salexigens DSM 3043]
gi|91798054|gb|ABE60193.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter
salexigens DSM 3043]
Length = 178
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H D P ++ I++ IS +L ++ L +A +V++VRG
Sbjct: 18 MRLTTKGRYAVTAMLDLALHADAGPISLADISKRQAISLSYLEQLFARLKRAALVKSVRG 77
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A+ I++ V+ A +ES C DC +C + +
Sbjct: 78 PGGGYLLAHGANAISVASVIGAVDESVDATRC--QGLSDCQQGDTCLTHHLWCDLSDKIH 135
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV +
Sbjct: 136 GFLDAITLAELVERQE 151
>gi|326403994|ref|YP_004284076.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
AIU301]
gi|325050856|dbj|BAJ81194.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
AIU301]
Length = 150
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 82/137 (59%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT TDYG+R L++ A+ D I++IA + IS+ L K++ L +AG+VET+RGR
Sbjct: 1 MHLTMFTDYGLRTLIFLALRPDRQASIAEIAASYDISDHHLTKVVHALGQAGLVETIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA I + +V++A E + C + C + G C L +V+ +A +AF
Sbjct: 61 HGGMRLARPAANIGLGEVIRAMEPGLALVACQEGGR--CAIGGCCDLQAVMNEARDAFLG 118
Query: 121 VLTQYSIECLVRNRSSI 137
V +Y++ +V + +
Sbjct: 119 VFDRYTLADVVSPGNPV 135
>gi|296135538|ref|YP_003642780.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
K12]
gi|294339667|emb|CAZ88027.1| HTH-type transcriptional regulator iscR [Thiomonas sp. 3As]
gi|295795660|gb|ADG30450.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
K12]
Length = 178
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDVAMRQHLGPVTLAGISQRQHISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +++I+I D++ A +E +C + G C + +
Sbjct: 61 PGGGYTLSRKSEEISIADIIIAVDEPLDATQCGGKENCNGEDNGPCMTHDLWAQLNAKMV 120
Query: 120 DVLTQYSIECLVRNR 134
+ L +++ LV
Sbjct: 121 EFLDSVNLKGLVEQN 135
>gi|160941172|ref|ZP_02088509.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC
BAA-613]
gi|158435733|gb|EDP13500.1| hypothetical protein CLOBOL_06065 [Clostridium bolteae ATCC
BAA-613]
Length = 131
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 40/127 (31%), Positives = 66/127 (51%), Gaps = 1/127 (0%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ AIH D P +I IA IS +L +I+ L +AG V ++RG +GG L RP+
Sbjct: 1 MVDLAIHGDGEPVKIKDIANRQGISGKYLEQIISILSRAGFVRSIRGNQGGYYLARPSSD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
T+ +++ TE S +C + K C C + R+ A V+ +Y++E LV+
Sbjct: 61 YTVGSILRITEGSLAPVDCLSGDKNPCTRQMDCVTLRLWRELDEAISGVVDKYTLEDLVQ 120
Query: 133 NRSSIKK 139
+ S+K
Sbjct: 121 WQKSMKD 127
>gi|313905754|ref|ZP_07839113.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
gi|313469360|gb|EFR64703.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
Length = 173
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 69/139 (49%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R YG+R L+ A + D IA+ ISE +L ++++ L K+G+V +VRG
Sbjct: 1 MKLTTRGRYGLRALIDLAENQDGGAVSTQSIAQRQDISESYLEQLIRMLKKSGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R AD+I++ DV+++ E S EC A DC C V ++ +
Sbjct: 61 AGGGYRLSRAADEISVGDVLRSLEGSLEAVECPAIVGDDCSSADECVTKIVWKRINDGIA 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
+ I LV +K
Sbjct: 121 QAVDSIMISELVDESMRLK 139
>gi|89900669|ref|YP_523140.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
ferrireducens T118]
gi|89345406|gb|ABD69609.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
ferrireducens T118]
Length = 169
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 50/130 (38%), Positives = 74/130 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVLM+CA++ + I+++AE+ IS+ L K++ L + G+++T RGR
Sbjct: 1 MRLTDYTDYTLRVLMFCALNPERSVTIAELAESHAISKNHLMKVVNDLARQGLLQTTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA I I DVV+ TE F + ECF C L C L V A F
Sbjct: 61 GGGLRLLKPAADIRIGDVVRQTETDFRLVECFDPGHNTCTLTAQCQLKQVFWTAKQNFLA 120
Query: 121 VLTQYSIECL 130
L + ++ +
Sbjct: 121 ELDKVTLADV 130
>gi|332978237|gb|EGK14968.1| transcriptional repressor NsrR [Psychrobacter sp. 1501(2011)]
Length = 171
Score = 123 bits (309), Expect = 9e-27, Method: Composition-based stats.
Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 22/163 (13%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT +DY +R LMY A+ D I+ IA + IS L K++ L + G +E++R
Sbjct: 1 MRLTNYSDYALRTLMYLAVIPDRDTLATITDIANSYQISRSHLTKVIHQLAQIGYIESIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA--------------------SHKID 98
G+ GG+RL +PA I + +V++ TE F V CFA +
Sbjct: 61 GKNGGIRLAKPAADIILGEVIRQTEPDFHVVPCFALLPSRTKPKENQVESLNTPMKYSES 120
Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
C + C L SV +A AF V+ Y++ +V N + +I
Sbjct: 121 CAITPVCKLKSVFAEATQAFLKVMDDYTLADIVNNEEELWQIL 163
>gi|311107146|ref|YP_003979999.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8]
gi|310761835|gb|ADP17284.1| rrf2 family protein 2 [Achromobacter xylosoxidans A8]
Length = 180
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKA 114
GG L R A +T+ D++ A +E C K DC C +
Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWATL 118
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 119 NRKMVDYLDSVSLQDLVDQQR-VRQL 143
>gi|221066571|ref|ZP_03542676.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
KF-1]
gi|264678869|ref|YP_003278776.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Comamonas testosteroni CNB-2]
gi|299532420|ref|ZP_07045812.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
testosteroni S44]
gi|220711594|gb|EED66962.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
KF-1]
gi|262209382|gb|ACY33480.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
CNB-2]
gi|298719658|gb|EFI60623.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
testosteroni S44]
Length = 178
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R A IT+ D++ + +E +C K +C G C +
Sbjct: 61 PGGGYTLARKATDITVADIIVSVDEPIDATQC--GGKENCLGEAGRCMTHELWAALNQRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV +
Sbjct: 119 VEFLDSVTLQKLVDEQ 134
>gi|260549846|ref|ZP_05824062.1| transcriptional regulator [Acinetobacter sp. RUH2624]
gi|260407096|gb|EEX00573.1| transcriptional regulator [Acinetobacter sp. RUH2624]
Length = 148
Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 4 MQLNKFTDYALRILMYIARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 64 GGGIRLNPKALDLKLGAIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120
Query: 121 VLTQYSIECLVRNRSS 136
L Q+++ +++ S
Sbjct: 121 SLDQHTLGEVLQQPKS 136
>gi|169794588|ref|YP_001712381.1| hypothetical protein ABAYE0402 [Acinetobacter baumannii AYE]
gi|169147515|emb|CAM85376.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
Length = 148
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 75/136 (55%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 4 MQLNKFTDYALRILMYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + +V+ + + EC + C L CGL +L +AL +F+
Sbjct: 64 GGGIRLNPKALDLKLGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 120
Query: 121 VLTQYSIECLVRNRSS 136
L QY++ +++ S
Sbjct: 121 SLDQYTLGEVLQQPKS 136
>gi|330445010|ref|ZP_08308664.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
gi|328493128|dbj|GAA03161.1| hypothetical protein PMSV_3888 [Photobacterium leiognathi subsp.
mandapamensis svers.1.1.]
Length = 143
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 75/144 (52%), Gaps = 5/144 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G VETVRG
Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELASITKVTETYNVSRNHMVKIINKLGQLGYVETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL PA I + DVV+A E + C A C + +C L +L A AF
Sbjct: 61 KNGGIRLGMPASTIIVGDVVRAI-EPLQIVNCSADF---CHITPACRLKGILANAREAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
L +++ LV + + + + N+
Sbjct: 117 AELDNHTLLSLVEDNAPLLDLLNS 140
>gi|154253702|ref|YP_001414526.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154157652|gb|ABS64869.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
lavamentivorans DS-1]
Length = 164
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 2/144 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT + Y + + A H+ P +++IA+ IS +L ++ L + +V++VRG
Sbjct: 7 KLTTKGRYAVMAMADLARHSSGSPVALAEIADRQEISLSYLEQLFAKLRRGDLVKSVRGP 66
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119
GG L R AD I I DV+ A +E C C P G C + +
Sbjct: 67 GGGYLLSREADSIRISDVILAVDEPIKATRCDLGSPKGCMPSSGRCITHDLWEGLSHQIQ 126
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
L S+ ++ R + K F+A
Sbjct: 127 LYLGSVSLGDVIDGRIAGKSAFDA 150
>gi|332288684|ref|YP_004419536.1| iron-responsive transcriptional regulator [Gallibacterium anatis
UMN179]
gi|330431580|gb|AEC16639.1| iron-responsive transcriptional regulator [Gallibacterium anatis
UMN179]
Length = 148
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 80/141 (56%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TDY +RVL+Y A H D + I +IA A ISE L K++ L K ++ ++RG+
Sbjct: 1 MKLSTFTDYNLRVLLYLAAHQDRLSTIQEIALAYNISENHLMKVIHHLAKNDLILSIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R ++ + +V+ E+ + EC C + SC L L A N+F++
Sbjct: 61 GGGIRLHRAPSELNLGKIVRLAEQKGPIVECLGDKNKCC-IAPSCRLPLALNDAFNSFYE 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L++Y++ ++ + ++++ +
Sbjct: 120 TLSKYTLADVMIDGATMQPLL 140
>gi|258541650|ref|YP_003187083.1| BadM/Rrf2 family transcriptional regulator [Acetobacter
pasteurianus IFO 3283-01]
gi|256632728|dbj|BAH98703.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-01]
gi|256635785|dbj|BAI01754.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-03]
gi|256638840|dbj|BAI04802.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-07]
gi|256641894|dbj|BAI07849.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-22]
gi|256644949|dbj|BAI10897.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-26]
gi|256648004|dbj|BAI13945.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-32]
gi|256651057|dbj|BAI16991.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654048|dbj|BAI19975.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-12]
Length = 169
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 75/146 (51%), Gaps = 7/146 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A+H + I +IA ISE L KI+ L + G ++T+RGR
Sbjct: 13 MRLTLHTDYALRTLLYLAVHTNRRVSIKEIARVYGISENHLVKIIHHLGRGGFIDTLRGR 72
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKAL 115
GG+ L R I I DVV+ TE+ + C + +C L +C L L +AL
Sbjct: 73 GGGLMLGRAPQDIRIGDVVRHTEDDMALVSCMSPSPGVPGSTECLLSRACHLRGALGEAL 132
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
+AF VL ++ ++ ++I
Sbjct: 133 DAFMAVLDSRTLADMLHTPE--RQIL 156
>gi|255525184|ref|ZP_05392127.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
carboxidivorans P7]
gi|296187437|ref|ZP_06855832.1| Rrf2 family protein (putative transcriptional regulator)
[Clostridium carboxidivorans P7]
gi|255511143|gb|EET87440.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
carboxidivorans P7]
gi|296047959|gb|EFG87398.1| Rrf2 family protein (putative transcriptional regulator)
[Clostridium carboxidivorans P7]
Length = 144
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ LM A++++ + I+E ISE +L +I L K+G+V +G
Sbjct: 1 MKISTKGRYGLKALMDIAMYSNSEAVTLKSISERQNISEGYLEQIFSALRKSGLVIGKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + ITI ++++ E + + + D + C ++
Sbjct: 61 AQGGYTLSKHISTITIGEILRTLEGNLSLVDIRDRDDAD--ELERCINENLWDAINKNIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D ++E LV S
Sbjct: 119 DYFDSITLEDLVNKYKS 135
>gi|58039326|ref|YP_191290.1| CDG1D protein [Gluconobacter oxydans 621H]
gi|58001740|gb|AAW60634.1| CDG1D protein [Gluconobacter oxydans 621H]
Length = 149
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/139 (39%), Positives = 79/139 (56%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL++ +H + I +IA+A ISE L K++ L + G V TVRGR
Sbjct: 1 MRLTLHTDYALRVLIHLGVHTSHRVSIREIAQAYRISENHLVKVVHRLGQGGFVTTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
GG+ L RPA +I + VV+ TE+ + +C + D C L +C L VL AL A
Sbjct: 61 GGGLELARPASEINVGAVVRFTEDDMTLVDCEGRNSTDGTPCVLSPACVLRGVLGDALGA 120
Query: 118 FFDVLTQYSIECLVRNRSS 136
F VL +Y++ L+ R +
Sbjct: 121 FLTVLDRYTLADLLTGREA 139
>gi|297539149|ref|YP_003674918.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301]
gi|297258496|gb|ADI30341.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301]
Length = 176
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 18/156 (11%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND----------------YPNRISQIAEACCISELFLFKI 44
M LT + + + ++ A+H P ++ I+E IS +L ++
Sbjct: 1 MKLTTKGRFAVTAMLDLALHEALANSESKLAGSELNEIKPVTLAGISERQSISLSYLEQL 60
Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
L + G+V +VRG GG +L + I++ +++ A +E C + +C G
Sbjct: 61 FSRLRRQGLVNSVRGPGGGYKLAKNYADISVAEIINAVDEQIDATHC--GGQENCKDEGR 118
Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
C + D L S+ +V +++S KK+
Sbjct: 119 CMTHDLWSTLNTKILDYLAGVSLADMVASQTSDKKV 154
>gi|49475376|ref|YP_033417.1| iron-responsive transcriptional regulator [Bartonella henselae str.
Houston-1]
gi|49238182|emb|CAF27391.1| hypothetical protein BH05830 [Bartonella henselae str. Houston-1]
Length = 155
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 75/130 (57%), Positives = 102/130 (78%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + + +RI +IA+A +SELFLFKILQPLV+AG V+TVRGR
Sbjct: 1 MRLTKQTNYALRILMYCADNQESLSRIPEIAKAYAVSELFLFKILQPLVEAGFVKTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA +I++ DVVK TE++F +AECF + K +CPL+ C L + L+KALNAFFD
Sbjct: 61 NGGVKLAKPAAEISVADVVKVTEDNFSMAECFDNAKSNCPLIDFCSLNTALQKALNAFFD 120
Query: 121 VLTQYSIECL 130
VL+ S+ L
Sbjct: 121 VLSVISLADL 130
>gi|319935067|ref|ZP_08009510.1| iron-sulfur cluster assembly transcription factor IscR
[Coprobacillus sp. 29_1]
gi|319810085|gb|EFW06454.1| iron-sulfur cluster assembly transcription factor IscR
[Coprobacillus sp. 29_1]
Length = 143
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A H+ + + +IA+ ISE +L I++ LV+A V+ +RG
Sbjct: 1 MMISTKGRYALRIMLDLAEHDCEVYLPLREIAQRQNISEKYLEIIIKILVQARFVQGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R T+ ++K TE S C C C + +K
Sbjct: 61 KGGGYRLVRDPHTYTVGSILKLTEGSLAPVACLECSPNTCERSQLCKTLPMWQKLDQMID 120
Query: 120 DVLTQYSIECLVR 132
+ ++ L+
Sbjct: 121 EYFEGITLADLMN 133
>gi|300704652|ref|YP_003746255.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
transcription factor [Ralstonia solanacearum CFBP2957]
gi|299072316|emb|CBJ43650.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
transcription factor [Ralstonia solanacearum CFBP2957]
Length = 191
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFD 120
GG L R AD +T+ D++ A +E +C G C + +
Sbjct: 61 GGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHSGRCMTHDLWATLNQKMVE 120
Query: 121 VLTQYSIECLVRNRSSIK 138
L S++ LV + +
Sbjct: 121 YLDSVSLQDLVDQQRERQ 138
>gi|320450975|ref|YP_004203071.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus
SA-01]
gi|320151144|gb|ADW22522.1| Rrf2 family protein, transcriptional regulator [Thermus scotoductus
SA-01]
Length = 154
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + + ++AEA IS+ +L +I L ++G + +VRG
Sbjct: 7 MWVSTKAQYGLRALVEIGLKAPEAVPLKEVAEAQGISQHYLEQIAAQLRRSGFIRSVRGA 66
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RP +++T L+VV+A E S C C VG C + ++ A
Sbjct: 67 RGGYRLARPPERVTALEVVEALEGSLAPVSCIEDP-ESCAKVGQCSTELLWKRVDLAMRQ 125
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL +++ L+ R I+
Sbjct: 126 VLGSTTLKDLIEERKLIEA 144
>gi|170741067|ref|YP_001769722.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
4-46]
gi|168195341|gb|ACA17288.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
4-46]
Length = 157
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/144 (38%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT+ TDY +R L+Y + + I++IA A ISE L K++ L + G++ T RGR
Sbjct: 1 MHLTRYTDYALRTLIYLGLREPQQSSIAEIARAYGISENHLTKVVHQLGRLGLIRTTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +P +I + VV+ TEE + ECFAS C + SC L L +AL AF
Sbjct: 61 GGGLRLGKPPSEIVVGAVVRQTEEDLALVECFASS--ACAITASCRLRRALGEALAAFLA 118
Query: 121 VLTQYSIECLVRNRS--SIKKIFN 142
VL Y++ L+ + S I ++
Sbjct: 119 VLDGYTLADLLEDGSGPEIARLLG 142
>gi|148554707|ref|YP_001262289.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148499897|gb|ABQ68151.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
RW1]
Length = 147
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 57/142 (40%), Positives = 88/142 (61%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL++ AI++D I +I+ +S L K++ L + G +ETVRGR
Sbjct: 1 MRLTRYTDYSLRVLIHLAINDDRLCSIGEISRTYDVSHNHLMKVVNALSRDGFIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA++IT+ +VV+ TEE F +A+C C L CGLT VL +A+ A
Sbjct: 61 TGGMRLARPANEITVGEVVRRTEEGFQLADCSG-----CALSPVCGLTGVLAEAMQAMMT 115
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
V Y + L+ +R +++++ N
Sbjct: 116 VFDSYKVSDLLTDREAMRRLMN 137
>gi|33592860|ref|NP_880504.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
gi|33596642|ref|NP_884285.1| putative DNA-binding protein [Bordetella parapertussis 12822]
gi|33601258|ref|NP_888818.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
gi|33572508|emb|CAE42084.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
gi|33573343|emb|CAE37327.1| putative DNA-binding protein [Bordetella parapertussis]
gi|33575693|emb|CAE32771.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
gi|332382273|gb|AEE67120.1| putative DNA-binding protein [Bordetella pertussis CS]
Length = 170
Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A + P ++ I++ IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----CGLTSVLRKA 114
GG L R A +T+ D++ A +E C K DC C +
Sbjct: 61 PGGGYSLARLARNVTVADIIFAVDEPLDATSC--GGKRDCTSGNDGKPGKCMTHELWTTL 118
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
D L S++ LV + ++++
Sbjct: 119 NRKMVDYLDSVSLQDLVDQQR-VRQL 143
>gi|78485131|ref|YP_391056.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
crunogena XCL-2]
gi|78363417|gb|ABB41382.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
crunogena XCL-2]
Length = 156
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LTK TDY +RVLMY A+ D +I I+E I + L K++ L K +++TVR
Sbjct: 12 MQLTKYTDYALRVLMYLAMQDEPDTKVQIKTISEKFGIPKNHLMKVVHQLGKENMIKTVR 71
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+ LC+P I + V++ E + C K C + C L L KA+ AF
Sbjct: 72 GKHGGIMLCQPPSDIIVGHVIRKFEMTLSPVNC---EKPLCQIQEICLLKPALFKAMEAF 128
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
L QY++ + +N+ +K
Sbjct: 129 LSTLDQYTLADITKNQPCLKDCL 151
>gi|288572865|ref|ZP_06391222.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288568606|gb|EFC90163.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 140
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +T YG+R ++ A P IS++A+ +SE +L ++ L K+G+V +VR
Sbjct: 1 MKLSTKTRYGLRAMIDLARGYGTGRPISISEVAKNQTLSESYLEQLFSKLRKSGLVSSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R +I +++ + E +A+C C G C + K ++
Sbjct: 61 GAQGGYLLSRDPKEILTSEIIDSLEGPISLADCVD--YGTCERGGCCPARFLWEKVSDSI 118
Query: 119 FDVLTQYSIECLVRNRS 135
V + ++ ++
Sbjct: 119 ERVTSSTTLWDIIEEYD 135
>gi|167825083|ref|ZP_02456554.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
gi|217420382|ref|ZP_03451887.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
gi|226199936|ref|ZP_03795486.1| putative transcriptional regulator [Burkholderia pseudomallei
Pakistan 9]
gi|217395794|gb|EEC35811.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
gi|225927992|gb|EEH24029.1| putative transcriptional regulator [Burkholderia pseudomallei
Pakistan 9]
Length = 162
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F
Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLADLV 131
>gi|126728159|ref|ZP_01743975.1| Transcriptional regulator [Sagittula stellata E-37]
gi|126711124|gb|EBA10174.1| Transcriptional regulator [Sagittula stellata E-37]
Length = 171
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 51/141 (36%), Positives = 76/141 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ RVLM+CA + R +QIA AC S + +++Q L G + T RGR
Sbjct: 1 MRLTTRTNLAARVLMFCAANPGTQVRSAQIAAACNASANHVARVVQQLQSEGFLSTRRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L RP I+I V + E AECF CPL G+C L L +AL+AF+
Sbjct: 61 TGGLQLARPPSAISIGTVFRLFETEIPFAECFDPVANTCPLTGTCRLKRYLTRALDAFYQ 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L + +++ L + + ++
Sbjct: 121 ELDRVTLDDLTQGNCGLDRLL 141
>gi|46198394|ref|YP_004061.1| rrf2 family protein [Thermus thermophilus HB27]
gi|55980424|ref|YP_143721.1| rrf2 family protein, transcriptional regulator [Thermus
thermophilus HB8]
gi|46196016|gb|AAS80434.1| rrf2 family protein [Thermus thermophilus HB27]
gi|55771837|dbj|BAD70278.1| rrf2 family protein, transcriptional regulator [Thermus
thermophilus HB8]
Length = 149
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + + ++AEA IS+ +L +I L AG + +VRG
Sbjct: 1 MWVSTKAQYGLRALVEIGLRAPRAVPLKEVAEAQGISQHYLEQIAAQLRNAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL RP +++T L+VV+A E S C C VG C + R+ A
Sbjct: 61 KGGYRLARPPEKVTALEVVEALEGSLAPVSCLEDP-ESCDKVGRCSTELLWRRVDLAMRQ 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL +++ L+ R ++
Sbjct: 120 VLGGTTLKDLIEERRLLEA 138
>gi|34581534|ref|ZP_00143014.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262919|gb|EAA26423.1| unknown [Rickettsia sibirica 246]
Length = 142
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 66/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+
Sbjct: 1 MQLTSVTDYGLRSLIYLASKPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L + + D+++ E + + ECF + C + SC +++A AF
Sbjct: 61 GGGIKLAFSPSSMKLGDIIEKLEPNMDIVECFNKNTNSCKITNSCQFKHFIKEASEAFIK 120
Query: 121 VLTQYSIEC 129
L Y++E
Sbjct: 121 TLNNYTLED 129
>gi|145589675|ref|YP_001156272.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048081|gb|ABP34708.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 189
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 65/140 (46%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I++ IS +L ++ L + IVE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALRETHGPVTLAGISQRQKISLSYLEQLFGKLRRFNIVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKAL 115
GG L RP++++++ D++ A +E +C K +C C +
Sbjct: 61 PGGGYTLARPSNEVSVADIIVAVDEPLDATQC--GGKGNCHSEEDTHGRCMTHDLWSNLN 118
Query: 116 NAFFDVLTQYSIECLVRNRS 135
+ + L+ S++ LV+ +
Sbjct: 119 SKMVEYLSSVSLKDLVQQQE 138
>gi|124267450|ref|YP_001021454.1| BadM/Rrf2 family transcriptional regulator [Methylibium
petroleiphilum PM1]
gi|124260225|gb|ABM95219.1| transcriptional regulator, BadM/Rrf2 family [Methylibium
petroleiphilum PM1]
Length = 177
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I+ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALREHSGPVALAAISSRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A++IT+ D++ A +E C G C +
Sbjct: 61 PGGGYSLGRKAEEITVADIIVAVDEPIDATGCGGKENCMGEDSGRCMTHDLWASLNTKMI 120
Query: 120 DVLTQYSIECLVRNR 134
+ L S+ LV ++
Sbjct: 121 EFLDSISLRKLVDDQ 135
>gi|294143081|ref|YP_003559059.1| Rrf2 family protein [Shewanella violacea DSS12]
gi|293329550|dbj|BAJ04281.1| Rrf2 family protein [Shewanella violacea DSS12]
Length = 152
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 76/143 (53%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT TD+GIR LMY AI D RI++I + +S + KI+ L K G +ET+R
Sbjct: 1 MQLTHYTDFGIRTLMYLAIQPDRETLFRIAEITQVFDLSPNHVSKIVHRLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL + I I +V+ E S +C + C L SC L VL +A+ A+
Sbjct: 61 GKSGGFRLGKSPQDINIGQLVRVLENSLAPIDCSKPY---CRLTPSCQLRGVLAEAVTAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL QYS+ +V N + K+
Sbjct: 118 LTVLDQYSLADIVSNNRELIKLL 140
>gi|94498334|ref|ZP_01304893.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58]
gi|94422214|gb|EAT07256.1| hypothetical protein SKA58_19165 [Sphingomonas sp. SKA58]
Length = 141
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y I+ IA A IS+ L K++ LV AG +E+VRGR
Sbjct: 1 MRLTRYTDYAMRVLLYLGRQPGELASIAVIARAFAISQNHLMKVVNDLVNAGYLESVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RP +I + +V+ TE+ F + C C + +CGLTSVL +AL AF
Sbjct: 61 NGGIRLARPPHEINVGALVRQTEDDFDLVGC-----GACVIAPACGLTSVLDEALLAFLK 115
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL YS+ ++ + +
Sbjct: 116 VLDGYSLADVLARKGDFSHLLAP 138
>gi|317154436|ref|YP_004122484.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis
Aspo-2]
gi|316944687|gb|ADU63738.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis
Aspo-2]
Length = 148
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+ + A H P RI IAE +S +L K+++ L G V + RG
Sbjct: 1 MRLTTRSRYGTRMALDIAQHCGPGPVRIQDIAERQGVSTKYLEKLIRRLKDGGYVVSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L RPA +I I ++V+ E + EC K DC C + + +A A +
Sbjct: 61 PRGGHTLARPASEILIGELVRVLEGDDSLVECRTGKK-DCQRRSVCLTSRLWVEAAEAMY 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L +++ ++ + K
Sbjct: 120 QRLNSFTLADMLADAEQCSK 139
>gi|297566014|ref|YP_003684986.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus
DSM 9946]
gi|296850463|gb|ADH63478.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus
DSM 9946]
Length = 151
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ ++ YG+R L+ + + +AEA IS+ +L +I L +AG + +VRG
Sbjct: 1 MWVSTKSQYGLRALVEIGLRAPEAVPLKDVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG +L +P +++T L+VV+A E S C C G C ++ ++ A
Sbjct: 61 KGGYKLGKPPEKLTALEVVEALEGSLAPVTCLDDP-ESCYHTGHCSTEALWKRVDLAMRG 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL S++ L+ R I+
Sbjct: 120 VLGSTSLKDLIEQRRIIEA 138
>gi|296112834|ref|YP_003626772.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
RH4]
gi|295920528|gb|ADG60879.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
RH4]
gi|326561076|gb|EGE11441.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
7169]
gi|326561502|gb|EGE11846.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
46P47B1]
gi|326565370|gb|EGE15548.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
12P80B1]
gi|326566701|gb|EGE16840.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
103P14B1]
gi|326567535|gb|EGE17650.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
BC1]
gi|326569382|gb|EGE19442.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
BC8]
gi|326571418|gb|EGE21433.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
BC7]
gi|326575299|gb|EGE25227.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
CO72]
gi|326576615|gb|EGE26522.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
101P30B1]
gi|326577518|gb|EGE27398.1| BadM/Rrf2 family transcriptional regulator [Moraxella catarrhalis
O35E]
Length = 168
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R Y + L+ A+ +S IA+ IS +L ++ L K G+V +
Sbjct: 1 MRLTTRGRYAVTALLDLAVQESRHQGAVSLSDIAKRQSISISYLEQLFSKLRKKGLVNST 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L +P + I I+ ++ A +ES +C K +C C + +
Sbjct: 61 RGALGGYHLAKPLEDIDIMSIITAVDESINATQC--GGKGNCQDGAMCLTHDLWHNLSHH 118
Query: 118 FFDVLTQYSIECLVRNRS 135
L + ++ L+ ++
Sbjct: 119 IESYLKKVTLAQLLETKN 136
>gi|108803666|ref|YP_643603.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
xylanophilus DSM 9941]
gi|108764909|gb|ABG03791.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
xylanophilus DSM 9941]
Length = 150
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK++ Y +R L+ + P +S+IA I E FL +I L +AGI+E+ RG
Sbjct: 1 MRLTKKSKYAVRALVEVVLRGSGGPVGVSEIARRQRIPERFLEQIFGELRRAGILESHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG P +++T+LD+V+ + A C A C + V +A A
Sbjct: 61 AHGGYSFSMPPEEVTVLDIVEVLDGEIRPARCSAGGVCYIDDAPLCSTSRVWDEARVALE 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
V +YSI L I+
Sbjct: 121 GVFGRYSIAQLAAAEREIRA 140
>gi|225570685|ref|ZP_03779708.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM
15053]
gi|225160512|gb|EEG73131.1| hypothetical protein CLOHYLEM_06785 [Clostridium hylemonae DSM
15053]
Length = 181
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R ++ A + + P IS IA ISE +L +++ + KAG+V+++RG
Sbjct: 30 MKLSTKGRYGLRAIIDLARYAETEPVSISSIAARQEISERYLEQLVGLMKKAGLVKSIRG 89
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
GG L R I++ DV++A E S +C A + + C C V +K +
Sbjct: 90 AGGGYVLARDMKDISVGDVLRALEGSLEPVKCAAFYAEEGCMASDGCVTKYVWQKINDNI 149
Query: 119 FDVLTQYSIECLV 131
+ + ++ LV
Sbjct: 150 NHTVDEIKLDELV 162
>gi|67641803|ref|ZP_00440570.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
4]
gi|121599140|ref|YP_993712.1| Rrf2 family protein [Burkholderia mallei SAVP1]
gi|167001110|ref|ZP_02266911.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
gi|167895170|ref|ZP_02482572.1| Rrf2 family protein [Burkholderia pseudomallei 7894]
gi|167919806|ref|ZP_02506897.1| Rrf2 family protein [Burkholderia pseudomallei BCC215]
gi|254178664|ref|ZP_04885319.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
gi|254199293|ref|ZP_04905659.1| putative transcriptional regulator [Burkholderia mallei FMH]
gi|254205604|ref|ZP_04911956.1| putative transcriptional regulator [Burkholderia mallei JHU]
gi|254296933|ref|ZP_04964386.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
gi|121227950|gb|ABM50468.1| Rrf2 family protein [Burkholderia mallei SAVP1]
gi|147748889|gb|EDK55963.1| putative transcriptional regulator [Burkholderia mallei FMH]
gi|147753047|gb|EDK60112.1| putative transcriptional regulator [Burkholderia mallei JHU]
gi|157807290|gb|EDO84460.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
gi|160699703|gb|EDP89673.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
gi|238522791|gb|EEP86233.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
4]
gi|243063060|gb|EES45246.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
Length = 162
Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F
Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLADLV 131
>gi|153872299|ref|ZP_02001233.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS]
gi|152071233|gb|EDN68765.1| Transcriptional regulator, Rrf2 family [Beggiatoa sp. PS]
Length = 130
Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AI H P ++ I++ IS +L ++ L K G+V++ RG
Sbjct: 1 MRLTTKGRYAVTAMLDLAINHTKGPITLADISQRQGISLSYLEQLFSRLRKRGLVDSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R AD I I DV+ A +E+ +C + +C +C +
Sbjct: 61 PGGGYRLSRTADTIVIADVIAAVDETVDATKC--KGQKNCRDSRACLTHQLWTDLSEQIR 118
Query: 120 DVLTQYSI 127
+ L+ +I
Sbjct: 119 EFLSDITI 126
>gi|217967652|ref|YP_002353158.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum
DSM 6724]
gi|217336751|gb|ACK42544.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum
DSM 6724]
Length = 138
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L R+ YG+R L+Y A + P + +IAEA I +L +I++ L + G V
Sbjct: 1 MKLPTRSRYGLRALIYIAKNQKEENPVSVRKIAEAEEIPLRYLERIMRILSQKGYVRAEV 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L + I ILDVV+A E + +C K C + C + + +
Sbjct: 61 GAEGGYYLSMLPENIKILDVVEALEGRINLVDCLHGIK--CKRMAYCPTRPLWMEMTKSL 118
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L +Y++ +R IK
Sbjct: 119 KETLAKYTLADFLREEEKIK 138
>gi|300023866|ref|YP_003756477.1| Rrf2 family transcriptional regulator [Hyphomicrobium denitrificans
ATCC 51888]
gi|299525687|gb|ADJ24156.1| transcriptional regulator, Rrf2 family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 523
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + + A H D +S +AE + +L ++ PL ++G+VE+ RG
Sbjct: 1 MELTTKGRYAVMAMADLAAHADRTAVPLSSVAERQHLPLSYLEQLFVPLRRSGLVESARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL + ++I+I V+ A EE C + C + C + A
Sbjct: 61 RAGGYRLSKKPEEISIAAVMAAVEEVTHFTRCTDND-PRCSVGTPCLTHGLWSALSRATS 119
Query: 120 DVLTQYSIECLV 131
+ L S+ ++
Sbjct: 120 EFLESVSLADVL 131
>gi|53719983|ref|YP_108969.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
gi|76809787|ref|YP_334214.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
gi|126442125|ref|YP_001059734.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
gi|126454292|ref|YP_001067019.1| putative transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|134277895|ref|ZP_01764610.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
gi|167720485|ref|ZP_02403721.1| putative transcriptional regulator [Burkholderia pseudomallei DM98]
gi|167739474|ref|ZP_02412248.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
gi|167816678|ref|ZP_02448358.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
gi|167846586|ref|ZP_02472094.1| putative transcriptional regulator [Burkholderia pseudomallei
B7210]
gi|167903554|ref|ZP_02490759.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
13177]
gi|167911804|ref|ZP_02498895.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
gi|237813128|ref|YP_002897579.1| putative transcriptional regulator [Burkholderia pseudomallei
MSHR346]
gi|242315306|ref|ZP_04814322.1| putative transcriptional regulator [Burkholderia pseudomallei
1106b]
gi|254184271|ref|ZP_04890861.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
gi|254191305|ref|ZP_04897809.1| putative transcriptional regulator [Burkholderia pseudomallei
Pasteur 52237]
gi|254195724|ref|ZP_04902150.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
gi|254261403|ref|ZP_04952457.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
gi|52210397|emb|CAH36378.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
gi|76579240|gb|ABA48715.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
gi|126221618|gb|ABN85124.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
gi|126227934|gb|ABN91474.1| putative transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|134251545|gb|EBA51624.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
gi|157938977|gb|EDO94647.1| putative transcriptional regulator [Burkholderia pseudomallei
Pasteur 52237]
gi|169652469|gb|EDS85162.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
gi|184214802|gb|EDU11845.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
gi|237506106|gb|ACQ98424.1| putative transcriptional regulator [Burkholderia pseudomallei
MSHR346]
gi|242138545|gb|EES24947.1| putative transcriptional regulator [Burkholderia pseudomallei
1106b]
gi|254220092|gb|EET09476.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
Length = 162
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F
Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLADLV 131
>gi|163734089|ref|ZP_02141530.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
gi|161392625|gb|EDQ16953.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
Length = 149
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+L+ + S+IA +SE L K+ LV+ G V + RGR
Sbjct: 1 MQLDKFTDYALRILITLVVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RP ++I + +VV+ V ECF C ++ +CGL L +A AFF
Sbjct: 61 NGGLTLARPPERILVGEVVRTMTRKEHVVECFG-TNKSCLILPACGLRQPLAEAQEAFFA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L Y++ + ++R S+ + N+
Sbjct: 120 TLDHYTLADVTQSRHSLGALLNS 142
>gi|110678994|ref|YP_682001.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
114]
gi|109455110|gb|ABG31315.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
114]
Length = 147
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 74/143 (51%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LM A+ S+IA +SE L K+ LV+ G V + RGR
Sbjct: 1 MQLDKFTDYALRILMTLAVRAPARVATSEIATLFGLSENHLSKVSTQLVREGFVLSERGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R ++I + VV+ V ECF + K C ++ SCGL L +A AFF
Sbjct: 61 NGGLTLARAPERILVGAVVRTMTRKAHVVECFGTDK-SCLILPSCGLRQPLAEAQEAFFA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L Y++ + R+R + + N
Sbjct: 120 TLDHYTLADVTRSRHGLGALLNP 142
>gi|53725252|ref|YP_102394.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
gi|52428675|gb|AAU49268.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
Length = 165
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 4 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F
Sbjct: 64 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 124 ELDGATLADLV 134
>gi|317049750|ref|YP_004117398.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
gi|316951367|gb|ADU70842.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
Length = 147
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ + +S + KI+ L +AG V RG
Sbjct: 1 MQLTSFTDYGLRALIYMATLPEGTQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL ++I I DVV+ E + C +C + +C L L A+ F
Sbjct: 61 KNGGIRLGMDPEKIVIGDVVRKM-EPLQLVNC-----NECSITPACRLRKALNDAVQLFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV+ S+ +I
Sbjct: 115 RELDNYTLADLVKGNDSLYQIL 136
>gi|125975009|ref|YP_001038919.1| BadM/Rrf2 family transcriptional regulator [Clostridium
thermocellum ATCC 27405]
gi|256005105|ref|ZP_05430075.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|125715234|gb|ABN53726.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum ATCC 27405]
gi|255990956|gb|EEU01068.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|316939170|gb|ADU73204.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 1313]
Length = 147
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R ++ A+++ + IAE ISE +L ++ L KA IV++++G
Sbjct: 1 MKMSTKGRYGLRAMLDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L IT+ +++ E + V + + C V K +
Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVDI-DDRDSEVSKEEKCINEFVWNKINKSID 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
V+ ++ L+R ++
Sbjct: 120 KVVDNITLGDLLREYQKLED 139
>gi|78223138|ref|YP_384885.1| BadM/Rrf2 family transcriptional regulator [Geobacter
metallireducens GS-15]
gi|78194393|gb|ABB32160.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
metallireducens GS-15]
Length = 135
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR +++ A + IS+IAEA + + FL KILQ K GIV++ RG
Sbjct: 2 MELTRKGEYAIRGIIHLAQLPPGKVALISEIAEATDVPQTFLAKILQSFAKIGIVQSFRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +IT+ +VV+A E C C +CG+ V R+
Sbjct: 62 AGGGFMLGRSASRITLREVVEAVEGPILPNRCLIGSG-TCERDSTCGVHPVWRQVQQRVV 120
Query: 120 DVLTQYSIECLVRNR 134
+VL +IE L ++
Sbjct: 121 EVLDGVTIEDLATHK 135
>gi|90419071|ref|ZP_01226982.1| possible transcriptional regulator [Aurantimonas manganoxydans
SI85-9A1]
gi|90337151|gb|EAS50856.1| possible transcriptional regulator [Aurantimonas manganoxydans
SI85-9A1]
Length = 160
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 78/142 (54%), Positives = 103/142 (72%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMYCA + +RI IA A SELFLFKILQPLV+AG+VETVRGR
Sbjct: 7 MRLTRQTNYAIRILMYCASNGGQLSRIKDIAAAYSASELFLFKILQPLVEAGMVETVRGR 66
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RPA I + +VV+ TEE+F +AECF + +DCPL+ SC L S LR+ALNAF
Sbjct: 67 NGGVRLARPAAAINLRNVVEVTEENFALAECFETGAVDCPLIESCELNSALREALNAFLG 126
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L Y+I+ L+ N++ +++
Sbjct: 127 ALGNYTIDDLLGNKAFMRRRLG 148
>gi|237747468|ref|ZP_04577948.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
gi|229378819|gb|EEO28910.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
Length = 155
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A H + P ++ I+E IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVMAMIDLARHQKNGPVSLAGISERQDISVAYLEQLFSKLRRGNLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
GG L A ITI D+V A +E V C + +C C ++
Sbjct: 61 PGGGYLLSGNAGDITIADIVFAVDEPLDVTRCGGNG--NCAKGSVKCVTHNLWASLNERI 118
Query: 119 FDVLTQYSIECLVRNRSSI 137
D L + L S++
Sbjct: 119 IDYLESVLLSDLSEMDSAL 137
>gi|218295733|ref|ZP_03496529.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus
Y51MC23]
gi|218243892|gb|EED10419.1| transcriptional regulator, BadM/Rrf2 family [Thermus aquaticus
Y51MC23]
Length = 148
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + + ++AEA IS+ +L +I L +AG + +VRG
Sbjct: 1 MWVSTKAQYGLRALVEIGLRAPEAVPLKEVAEAQGISQHYLEQIAAQLRRAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL RP +++T L+VV+A E S C C VG C + R+ A
Sbjct: 61 KGGYRLARPPEKVTALEVVEALEGSLAPVSCIEDP-ESCAKVGQCSTELLWRRVDLAMRQ 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL +++ L+ R ++
Sbjct: 120 VLGGTTLKDLIEERRLLEA 138
>gi|257792249|ref|YP_003182855.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|317490177|ref|ZP_07948665.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|325833540|ref|ZP_08165989.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
HGA1]
gi|257476146|gb|ACV56466.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|316910671|gb|EFV32292.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|325485464|gb|EGC87933.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
HGA1]
Length = 136
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R Y +R+++ A + + Q AE +S +L ++ LVKAG++++VR
Sbjct: 1 MMISTRGRYALRLMIDIARQGEAGALVTMRQAAEREDLSVKYLEQLGGALVKAGVLKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L RPADQIT DV++ATE S C CP C + R A
Sbjct: 61 GVSGGYLLARPADQITAGDVLRATEGSCAPVSCLEDGAEACPRRDQCVAINFWRGLDQAI 120
Query: 119 FDVLTQYSIECLVR 132
D + ++ LV+
Sbjct: 121 EDYVDNVTLADLVQ 134
>gi|75676837|ref|YP_319258.1| hypothetical protein Nwi_2653 [Nitrobacter winogradskyi Nb-255]
gi|74421707|gb|ABA05906.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
winogradskyi Nb-255]
Length = 142
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/131 (41%), Positives = 76/131 (58%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT DY +R+LMY A H D I + A IS L K+ L +AG ++ VRGR
Sbjct: 1 MRLTSFFDYTLRLLMYAATHGDRLITIEETASVYGISRTHLMKVANQLTRAGYLKAVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + ++I + DV+ ATE F + ECF+S CP+ SC L + LR+ALNAF
Sbjct: 61 SGGLMLAKRPNRIKLGDVLCATEPDFALVECFSS-NNRCPITSSCRLRAPLREALNAFTT 119
Query: 121 VLTQYSIECLV 131
L +Y++ L+
Sbjct: 120 TLDRYTLADLI 130
>gi|119385748|ref|YP_916803.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119376343|gb|ABL71107.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 145
Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/129 (39%), Positives = 67/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDYG+RVLM A + P QIA IS+ L K++ L G V + RGR
Sbjct: 1 MRLATFTDYGLRVLMRLAGAPEKPISTGQIAREFAISQHHLAKVVSDLGLGGFVRSERGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA +IT+ VV+ E F + ECF + +C L C L L A AF
Sbjct: 61 SGGLRLMRPAHEITLGQVVRHLERKFAIVECFRADGGECVLRPRCRLRPQLSAAREAFMA 120
Query: 121 VLTQYSIEC 129
L + ++E
Sbjct: 121 ELDRTTLED 129
>gi|84393609|ref|ZP_00992361.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01]
gi|84375750|gb|EAP92645.1| hypothetical protein V12B01_20553 [Vibrio splendidus 12B01]
Length = 147
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL+Y AI+N + I IA + IS+ L KI+Q L G + RG+
Sbjct: 1 MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L QI I +V+ E+ + ECF C + +C L ++ +A F+
Sbjct: 61 NGGLKLSCHPSQINIGTLVRELEDKRNLVECFGED-NSCVITPNCQLKTIFAEAQECFYK 119
Query: 121 VLTQYSIECLVRNRSSIK 138
L YS++ L+ S K
Sbjct: 120 SLDAYSLQDLLGEGHSYK 137
>gi|89094369|ref|ZP_01167310.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92]
gi|89081428|gb|EAR60659.1| hypothetical protein MED92_09651 [Oceanospirillum sp. MED92]
Length = 143
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVL Y A ++ +S+IA+ IS L K++ L KAG + T RG+
Sbjct: 1 MQLSRFTDYTLRVLFYVATNDKRLVTLSEIAKCYDISVEHLRKVVHALSKAGHLATFRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L + +I I +V+ E + C + C L G C L SVL +A AF
Sbjct: 61 NGGIKLAKHPSEINIGEVIAEAEGRQPLINC---GQQMCRLTGFCTLQSVLGEAQTAFMR 117
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL QY++ ++ + + + N
Sbjct: 118 VLDQYTLADMLESTDMRESLIN 139
>gi|127514738|ref|YP_001095935.1| BadM/Rrf2 family transcriptional regulator [Shewanella loihica
PV-4]
gi|126640033|gb|ABO25676.1| transcriptional regulator, BadM/Rrf2 family [Shewanella loihica
PV-4]
Length = 150
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L K G ++TVR
Sbjct: 1 MQLTRYTDFGIRTLMYLALSPERETLFRIAEITEVFDLSANHVSKIVHHLGKEGYLQTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG +L +PADQI I +V+ E S +C + C +C L VL +A++A+
Sbjct: 61 GKAGGFKLGKPADQINIGVLVRTLENSLSPIDCSKPY---CRFSPACQLKGVLAEAVDAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL +YS+ +V NR ++ +
Sbjct: 118 LAVLDKYSLADVVSNRDELRALL 140
>gi|37528395|ref|NP_931740.1| transcriptional repressor NsrR [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|81418099|sp|Q7MYU4|NSRR_PHOLL RecName: Full=HTH-type transcriptional repressor nsrR
gi|36787833|emb|CAE16948.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 141
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L G+V+ VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPQSRMTSISEVTDIYGVSRNHMVKIINQLSHLGLVDAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+A E + C C + +C L VL +A+ F
Sbjct: 61 KNGGIRLGKPAKDIRIGDVVRAL-EPLSLVNCSQE---SCHITSACRLKVVLNQAIERFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L ++++ ++ + + K+
Sbjct: 117 EELDKHTLADMIEDNIPLYKLL 138
>gi|303238938|ref|ZP_07325469.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
cellulolyticus CD2]
gi|302593571|gb|EFL63288.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
cellulolyticus CD2]
Length = 150
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++ AIH+ + + I+E C +SE ++ +I L +AGIV+++RG
Sbjct: 1 MKISTKGRYGLEAIVDLAIHSAEGHVNLKSISERCGMSEAYILQIFLILRRAGIVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + +IT+ DV+ A E C + C GSC ++A
Sbjct: 61 AQGGYVLAKEPSEITVGDVLTALEGPLAPVACVVTEAEHTCERYGSCATRGFWESIMSAL 120
Query: 119 FDVLTQYSIECLVR 132
DV +I LV
Sbjct: 121 NDVANSITIADLVE 134
>gi|46201636|ref|ZP_00054636.2| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 140
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL++ N I++IAE IS+ L K++ L ++G +ETVRG+
Sbjct: 1 MRLTLHTDYALRVLVHVGRQNGDLVTINEIAERYGISKNHLTKVVHQLGRSGYLETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL R + + + ++ TE+ F + C +C L C L L+AFF
Sbjct: 61 YGGVRLLRQPEDVKLGQFIRETEDDFALVRCMRCDSPDECRLNAGCIARDALSSGLSAFF 120
Query: 120 DVLTQYSIECLVRNRSS 136
VL Y++ ++ N
Sbjct: 121 KVLDGYTLADMLDNERQ 137
>gi|15807088|ref|NP_295817.1| rrf2 protein [Deinococcus radiodurans R1]
gi|6459891|gb|AAF11645.1|AE002045_5 rrf2 protein [Deinococcus radiodurans R1]
Length = 197
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + +AE +S+ +L +I L +AG ++++RG
Sbjct: 46 MWVSTKAQYGLRALVEIGRRGGEAVPLKDVAERQGLSQHYLEQIASNLRRAGFIKSIRGA 105
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA+ I DVV A E S C + C CG ++ + A D
Sbjct: 106 HGGYRLARPAEAINAYDVVTALEGSIAPVSCVEDDHV-CDSRNVCGTQNLWFRVDAALRD 164
Query: 121 VLTQYSIECLVRNRS 135
VL ++ L+
Sbjct: 165 VLGNTTLADLIAESE 179
>gi|240140269|ref|YP_002964747.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
AM1]
gi|254562849|ref|YP_003069944.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
DM4]
gi|240010244|gb|ACS41470.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
AM1]
gi|254270127|emb|CAX26117.1| transcriptional regulator, rrf2 family [Methylobacterium extorquens
DM4]
Length = 158
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y +H + I++IA A ISE L K++ L + G++ T RGR
Sbjct: 1 MRLTRYTDYALRALIYLGLHEPQQSSIAEIARAYGISESHLTKVVHQLGRLGLIRTTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R AD+I I VV+ TE+ + ECFA C + C L L +AL AF
Sbjct: 61 GGGLHLGRRADEIVIGAVVRQTEDDLALVECFAGG--ACAITAPCRLRRALGEALAAFLA 118
Query: 121 VLTQYSIECLVRNRS--SIKKIFN 142
VL Y++ L+ + + I I
Sbjct: 119 VLDGYTLADLLGDEAGPEIAAILG 142
>gi|221633611|ref|YP_002522837.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM
5159]
gi|221156767|gb|ACM05894.1| Transcriptional regulator superfamily [Thermomicrobium roseum DSM
5159]
Length = 146
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +YG+R ++ A + P +S IA+ + +L +++ PL +AG+V + RG
Sbjct: 1 MKVSTRGEYGLRAMVSLARMYGRGPMPLSVIAQDSAVPLAYLEQLMLPLRRAGLVVSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNA 117
GG L RP +Q+ + ++ + E +C + CP++ C V K ++
Sbjct: 61 AHGGYELARPPEQVKVGEIYRVMEGPIAPMDCVREDADEDICPMIDGCATRIVWLKLRDS 120
Query: 118 FFDVLTQYSIECLVRN 133
+VL ++ L+ +
Sbjct: 121 IVEVLDSTTLADLISH 136
>gi|322831162|ref|YP_004211189.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
gi|321166363|gb|ADW72062.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
Length = 141
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + +D ISQ+ E +S + KI+ L +AG+V VRG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPDDQMTNISQVTEVYGVSRNHMVKIINQLSRAGLVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG++L +PA+ I I DVV+ E + C + C + +C L VL A+ F
Sbjct: 61 KNGGIKLGKPAETIRIGDVVREL-EPLSLVNCASDF---CHITPACRLKQVLHTAVEHFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
D L QY++ +V++ S++ K+
Sbjct: 117 DELNQYTLADMVKDNSTLYKLL 138
>gi|294101175|ref|YP_003553033.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
colombiense DSM 12261]
gi|293616155|gb|ADE56309.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
colombiense DSM 12261]
Length = 138
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +T YG+R L+ D P I+ IA ISE +L ++ L + G++E+VR
Sbjct: 1 MKLSTKTRYGLRALLELVRQYDGRTPLSITDIASKENISERYLEQLFLKLRRDGLIESVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R +IT+ +VV+ E + +A+C +C +C + + ++
Sbjct: 61 GPQGGYLLSRAPMEITVAEVVEVLEGNIQIADCLEG--PECMRESACPARKLWLRLRDSI 118
Query: 119 FDVLTQYSIECLVRNRS 135
+VL +++ L+ +
Sbjct: 119 DNVLVSTTLKDLIEDHD 135
>gi|253991548|ref|YP_003042904.1| transcriptional repressor NsrR [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|211638426|emb|CAR67048.1| Conserved Hypothetical Protein [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253782998|emb|CAQ86163.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 141
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ + +S + KI+ L G+V+ VRG
Sbjct: 1 MQLTSFTDYGLRALIYMAALPQSQMTSISEVTDVYGVSRNHMVKIINQLSHLGLVDAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA I I DVV+A E + C C + +C L VL +A F
Sbjct: 61 KNGGIRLGKPAKDIRIGDVVRAL-EPLSLVNCSQE---SCHITSACRLKVVLNQAAEKFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ L ++++ +V + + K+
Sbjct: 117 EELDKHTLADMVEDNIPLYKLL 138
>gi|300715046|ref|YP_003739849.1| transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661]
gi|299060882|emb|CAX57989.1| Transcriptional regulator, Rrf2 family [Erwinia billingiae Eb661]
Length = 145
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ EA +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDYGLRALIYLAALPAGQMASITEVTEAYGVSRNHMVKIINQLSRAGYVAAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA +I I VV+ E + C C + +C L L A+ +F
Sbjct: 61 KNGGIRLGKPASEIVIGQVVREM-EPLQLVNC-----QPCLISPACRLKKALYDAVQSFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL Y++ L+ + + K+
Sbjct: 115 AVLDGYTLADLLEDNHPLYKLL 136
>gi|260881734|ref|ZP_05405118.2| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella
multacida DSM 20544]
gi|260848283|gb|EEX68290.1| iron-sulfur cluster assembly transcription factor IscR [Mitsuokella
multacida DSM 20544]
Length = 154
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + L A+ + + + IA + +SE +L +++ PL +AGIV++VRG
Sbjct: 5 MKISTKGRYSVTALYELALRYGEGAVSLKSIATSQGLSENYLEQLMAPLRRAGIVKSVRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
+GG L R +ITI +++ E + +C S + C +C V K
Sbjct: 65 AQGGYMLARDPKEITIGEIITTVEGPIALVDCLLTSAESAEQPCDRACACVTRGVWEKVC 124
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
++ +VL ++ L +
Sbjct: 125 DSISNVLNHITLYDLCTDHPE 145
>gi|220922121|ref|YP_002497422.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
nodulans ORS 2060]
gi|219946727|gb|ACL57119.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
nodulans ORS 2060]
Length = 153
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 54/132 (40%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y + I+++A A ISE L K++ L + G+V T RGR
Sbjct: 1 MRLTCFTDYALRTLIYLGTAEPRQSSIAEVARAYGISENHLVKVVHQLGRLGLVRTTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + A +I I +VV+ATEE + +CFA C + +C L +VL +AL AFF
Sbjct: 61 GGGLRLGKAAAEIRIGEVVRATEEDLALVQCFAGG--SCAITPACRLRNVLGEALAAFFA 118
Query: 121 VLTQYSIECLVR 132
VL +Y++ L+
Sbjct: 119 VLDRYTLADLLE 130
>gi|157964032|ref|YP_001504066.1| BadM/Rrf2 family transcriptional regulator [Shewanella pealeana
ATCC 700345]
gi|157849032|gb|ABV89531.1| transcriptional regulator, BadM/Rrf2 family [Shewanella pealeana
ATCC 700345]
Length = 149
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDYG+R LMY A+H++ RI++I E +S + K++ L K G ++TVR
Sbjct: 1 MQLTRYTDYGLRTLMYLALHSERESLFRIAEITEVFDLSANHISKVVHHLGKLGYLQTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG +L +PA +I I VV+A E S +C + C +C L L A+NA+
Sbjct: 61 GKSGGFKLAKPASEINIGQVVRALENSLAPIDCSKPY---CLFTPACKLRGALADAVNAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL Y+++ +V N+ +K +
Sbjct: 118 LAVLDGYTLDMIVTNKQELKSLL 140
>gi|59801064|ref|YP_207776.1| hypothetical protein NGO0637 [Neisseria gonorrhoeae FA 1090]
gi|194098839|ref|YP_002001902.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae NCCP11945]
gi|239999125|ref|ZP_04719049.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae 35/02]
gi|240013967|ref|ZP_04720880.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae DGI18]
gi|240016408|ref|ZP_04722948.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae FA6140]
gi|240080528|ref|ZP_04725071.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae FA19]
gi|240113104|ref|ZP_04727594.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae MS11]
gi|240115860|ref|ZP_04729922.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae PID18]
gi|240118158|ref|ZP_04732220.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae PID1]
gi|240121535|ref|ZP_04734497.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae PID24-1]
gi|240123706|ref|ZP_04736662.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae PID332]
gi|240125897|ref|ZP_04738783.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae SK-92-679]
gi|240128409|ref|ZP_04741070.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae SK-93-1035]
gi|254493902|ref|ZP_05107073.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|260440325|ref|ZP_05794141.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae DGI2]
gi|268594960|ref|ZP_06129127.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268596661|ref|ZP_06130828.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
gi|268599189|ref|ZP_06133356.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268601536|ref|ZP_06135703.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268603874|ref|ZP_06138041.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268682338|ref|ZP_06149200.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268684495|ref|ZP_06151357.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268686806|ref|ZP_06153668.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291043619|ref|ZP_06569335.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
gi|293398928|ref|ZP_06643093.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
gonorrhoeae F62]
gi|59717959|gb|AAW89364.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934129|gb|ACF29953.1| Putative HTH-type transcriptional regulator NMB1378 [Neisseria
gonorrhoeae NCCP11945]
gi|226512942|gb|EEH62287.1| conserved hypothetical protein [Neisseria gonorrhoeae 1291]
gi|268548349|gb|EEZ43767.1| DNA-binding protein [Neisseria gonorrhoeae 35/02]
gi|268550449|gb|EEZ45468.1| DNA-binding protein [Neisseria gonorrhoeae FA19]
gi|268583320|gb|EEZ47996.1| conserved hypothetical protein [Neisseria gonorrhoeae MS11]
gi|268585667|gb|EEZ50343.1| conserved hypothetical protein [Neisseria gonorrhoeae PID18]
gi|268588005|gb|EEZ52681.1| conserved hypothetical protein [Neisseria gonorrhoeae PID1]
gi|268622622|gb|EEZ55022.1| conserved hypothetical protein [Neisseria gonorrhoeae PID332]
gi|268624779|gb|EEZ57179.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-92-679]
gi|268627090|gb|EEZ59490.1| conserved hypothetical protein [Neisseria gonorrhoeae SK-93-1035]
gi|291012082|gb|EFE04071.1| DNA-binding protein [Neisseria gonorrhoeae DGI2]
gi|291610342|gb|EFF39452.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
gonorrhoeae F62]
gi|317164418|gb|ADV07959.1| hypothetical protein NGTW08_0991 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 148
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P QI I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135
>gi|257455232|ref|ZP_05620467.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter
aerosaccus SK60]
gi|257447194|gb|EEV22202.1| transcriptional regulator, BadM/Rrf2 family [Enhydrobacter
aerosaccus SK60]
Length = 204
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 66/143 (46%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R Y + L+ A+ +S IA+ IS +L ++ L K G+V +
Sbjct: 1 MRLTTRGRYAVTALLDLALQEQKHELAVSLSDIAKRQEISISYLEQLFSKLRKKGLVVST 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG + +P ++I+I+ ++ A +ES C K +C C +
Sbjct: 61 RGASGGYHIAKPINEISIMSIISAVDESVDARAC--EGKGNCQDGAMCLTHDLWNGLSEQ 118
Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
+ L+ +++ L+ NR I++I
Sbjct: 119 IENYLSTVTLDTLI-NRQIIREI 140
>gi|326576519|gb|EGE26427.1| transcriptional regulator NsrR [Moraxella catarrhalis CO72]
Length = 177
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 79/173 (45%), Gaps = 31/173 (17%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R
Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI--------------------- 97
G+ GG+RL I + ++V+ TE FFV CFA
Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDDVMADNLIKIKTLD 120
Query: 98 --------DCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
C + +C L V +A AF VL Y++ ++ N ++ +
Sbjct: 121 LSVGQPALSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELRHCLS 173
>gi|317131673|ref|YP_004090987.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
harbinense YUAN-3]
gi|315469652|gb|ADU26256.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
harbinense YUAN-3]
Length = 143
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+R L+ A+H D + IA+ IS +L ++ L KAG V +V+G
Sbjct: 1 MKLSTKGRYGLRALLDLAVHADGSHVSLYNIADRQQISVNYLEQVFSQLRKAGFVRSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L ++TI +++ E S +A + C V + ++
Sbjct: 61 AQGGYALAMQPQEMTIGGILRVLEGSLHIA---TEETSGENPLQDCIKKYVWDRINDSID 117
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++ LV S
Sbjct: 118 QVVDSITLGDLVEEYRS 134
>gi|256826980|ref|YP_003150939.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
DSM 15641]
gi|256583123|gb|ACU94257.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
DSM 15641]
Length = 152
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+ + A H P + + A+ IS ++ ++ + G++ + RG
Sbjct: 1 MKISTKGRYALRLAIDVAQHQLAGPVPLRESAKRQGISVKYMEQLAAQMTHGGLLTSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R IT D+++ +E + C CP G+C + A
Sbjct: 61 AHGGYRLARLDTDITAGDILRVSEGGYAPVACLEDDFGICPHRGACETIAFWEGLDQAIE 120
Query: 120 DVLTQYSIECLV 131
+ ++ LV
Sbjct: 121 RYVDSVTLADLV 132
>gi|294634461|ref|ZP_06712997.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685]
gi|291092171|gb|EFE24732.1| transcriptional repressor NsrR [Edwardsiella tarda ATCC 23685]
Length = 140
Score = 121 bits (305), Expect = 2e-26, Method: Composition-based stats.
Identities = 51/142 (35%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + ISQ+ E +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDFGLRALVYMAALPEGQMTSISQVTEVYGVSRNHMVKIINQLSRAGFVAAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL RPA +I I DVV+ E + C S C + +C L VL++A AF
Sbjct: 61 KNGGIRLGRPASEIRIGDVVREL-EPLTLVNCSQSF---CHITPACRLKPVLQRATEAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L + ++ L+ + S + K+
Sbjct: 117 AELDKCTLADLIEHNSPLYKLL 138
>gi|222150933|ref|YP_002560086.1| hypothetical protein MCCL_0683 [Macrococcus caseolyticus JCSC5402]
gi|222120055|dbj|BAH17390.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 138
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 78/135 (57%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +RVLMY A ++ +I +IA IS+ L K++ L G +ET RGR
Sbjct: 1 MKLTLYSDYSLRVLMYIARQ-EHRVQIDEIANFYGISKNHLTKVVNNLATLGYIETTRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+R+ ++I I +++ TEE F + ECF CP+ G CGL VL +AL A+
Sbjct: 60 GGGIRIKMAPEEINIGALIRKTEEHFNLVECFDRETNTCPIAGICGLQGVLSEALGAYLS 119
Query: 121 VLTQYSIECLVRNRS 135
VL Y++ ++ N+
Sbjct: 120 VLDSYTLNDILHNKR 134
>gi|291614714|ref|YP_003524871.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans
lithotrophicus ES-1]
gi|291584826|gb|ADE12484.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans
lithotrophicus ES-1]
Length = 160
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I+E IS +L ++ L + +V +VRG
Sbjct: 1 MRLTTKGRFAVTAMVDLAMRGGKGPVTLAGISERQKISLSYLEQLFGKLRRNNVVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA++I+++D++ A +E+ +C + +C C + A
Sbjct: 61 PGGGYCLARPANKISMVDIITAVDEALDATQC--GTRGNCADGKPCLTHDLWFGLNEAIH 118
Query: 120 DVLTQYSIECLVRNR 134
+ L++ +++ LV +
Sbjct: 119 EYLSKINLQQLVDGQ 133
>gi|288941147|ref|YP_003443387.1| BadM/Rrf2 family transcriptional regulator [Allochromatium vinosum
DSM 180]
gi|288896519|gb|ADC62355.1| transcriptional regulator, BadM/Rrf2 family [Allochromatium vinosum
DSM 180]
Length = 156
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A+H P ++ I+ + IS +L ++ L +V VRG
Sbjct: 1 MRLSTKGRYAVTAMLDLALHAGKGPVTLADISSSQGISLSYLEQLFAALRAKKLVRGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I+I +++ A +E + C + +C C + + + F
Sbjct: 61 PGGGYYLGRAPSEISIANIICAVDEWVELTRC--GGRQNCHEGQRCLTHHLWDQLSDEIF 118
Query: 120 DVLTQYSIECLVRN 133
L+ S++ LV
Sbjct: 119 RFLSDISLQDLVDR 132
>gi|30249423|ref|NP_841493.1| hypothetical protein NE1452 [Nitrosomonas europaea ATCC 19718]
gi|30138786|emb|CAD85363.1| Uncharacterized protein family UPF0074 [Nitrosomonas europaea ATCC
19718]
Length = 159
Score = 121 bits (305), Expect = 3e-26, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 66/139 (47%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + L+ A H + P ++ I+E IS +L ++ L + +V++VRG
Sbjct: 1 MRLTTKGRFAVTALLDIAIRHGNGPVALADISERQRISLSYLEQLFAKLRQRKLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + D++++ D++ A +E +C K +C C + K F
Sbjct: 61 PGGGYCLAKGLDEVSVADIILAVDEPIDSTQC--GGKENCLGDSKCMTHDLWAKLNEIIF 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L +++ LV +S +
Sbjct: 119 DYLGHVTLKRLVEEQSQRE 137
>gi|167837274|ref|ZP_02464157.1| Rrf2 family protein [Burkholderia thailandensis MSMB43]
Length = 161
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 77/131 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCAANPDRLITIAELAERHAVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P +I I DV++A+E F + ECF + C L C L +L AL A+F
Sbjct: 61 GGGVRLAMPPARIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLADLV 131
>gi|326316430|ref|YP_004234102.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373266|gb|ADX45535.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 168
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/138 (40%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDY +RVLMYCA P I+++A IS L KI+Q L G+++T R
Sbjct: 1 MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL PA I + DVV+ TE F + ECF C L G C L L +A +F
Sbjct: 61 GRGGGLRLRVPAADIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSF 120
Query: 119 FDVLTQYSIECLVRNRSS 136
VL ++ LV ++
Sbjct: 121 LAVLDGVTLADLVARPAA 138
>gi|171058160|ref|YP_001790509.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii
SP-6]
gi|170775605|gb|ACB33744.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii
SP-6]
Length = 165
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 73/131 (55%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+LMY + I+++A+A ISE L KI L AG +ETVRG+
Sbjct: 1 MRLTTMTDYALRLLMYVGQRPERLCTIAEVAQAYGISEAHLMKITHQLGLAGWIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL QI + ++V++ E F + EC AS C L G C LT + AL AF +
Sbjct: 61 GGGMRLALEPAQINLGELVRSVEPDFALVECLASGNA-CSLTGRCRLTGIFDDALAAFME 119
Query: 121 VLTQYSIECLV 131
L ++ ++
Sbjct: 120 KLDARTLAEVL 130
>gi|166031726|ref|ZP_02234555.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC
27755]
gi|166028179|gb|EDR46936.1| hypothetical protein DORFOR_01426 [Dorea formicigenerans ATCC
27755]
Length = 155
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ L+ + YG+R ++ A ++ P I IA +SE +L ++ L KAG+V+++RG
Sbjct: 4 LKLSTKGKYGLRAIIDLARFSEKEPVSIGCIATRQKLSERYLEQLFALLKKAGLVKSIRG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
GG L R A +I++ DV++A E + C A + + C C V +K ++
Sbjct: 64 ASGGYVLARDASEISVGDVLRALEGNLEPVRCAAFYSEEGCMASDECVTKYVWQKINDSI 123
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ + ++ LV+ +
Sbjct: 124 NKTVNEIKLDELVKESKELN 143
>gi|89075977|ref|ZP_01162349.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34]
gi|89048326|gb|EAR53905.1| hypothetical protein SKA34_16143 [Photobacterium sp. SKA34]
Length = 144
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G +ETVRG
Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + A+ I + DVV+A E + C C + +C L VL A AF
Sbjct: 61 KNGGIRLGKSAESIIVGDVVRAI-EPLQIVNCSVDF---CHITPACRLKGVLADAREAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L +Y++ LV + + + + +
Sbjct: 117 AELDKYTLLNLVEDNAPLLNLLS 139
>gi|240850269|ref|YP_002971662.1| iron-responsive transcriptional regulator [Bartonella grahamii
as4aup]
gi|240267392|gb|ACS50980.1| iron-responsive transcriptional regulator [Bartonella grahamii
as4aup]
Length = 147
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 71/130 (54%), Positives = 99/130 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +R+ +IA+A +SELFLFKILQ LV+AG ++TVRGR
Sbjct: 1 MRLTKQTNYALRMLMYCADNQGTLSRVPEIAKAYAVSELFLFKILQLLVQAGFIQTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +PA +I++ DVVK TE++F +AECF + + CPL+ C L + L+KALNAFF+
Sbjct: 61 NGGVRLAKPAAEISVADVVKVTEDNFSLAECFDTAEPTCPLIDFCSLNTALQKALNAFFE 120
Query: 121 VLTQYSIECL 130
VL+ S+ L
Sbjct: 121 VLSVISLADL 130
>gi|225165991|ref|ZP_03727744.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium
TAV2]
gi|224799763|gb|EEG18239.1| transcriptional regulator, BadM/Rrf2 family [Opitutaceae bacterium
TAV2]
Length = 200
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+K+ +Y +R L+ I + +++++A+ I FL +I+Q L +G+V +
Sbjct: 1 MKLSKKGEYALRALIDLGIAAEVDRDLVQVAELADKELIPIKFLEQIMQELKTSGLVISQ 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS---HKIDCPLVGSCGLTSVLRKA 114
RG+ GG RL RPA +I+I V++ + C + K CP CGL ++
Sbjct: 61 RGKFGGYRLSRPASEISIGSVIRFIDGPLAPIGCVSQTAYEKCSCPDETHCGLRMLMLDV 120
Query: 115 LNAFFDVLTQYSIECLVR 132
NA +L +YS+ +V
Sbjct: 121 RNAIAGILDRYSLADVVD 138
>gi|302344575|ref|YP_003809104.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii
DSM 2075]
gi|301641188|gb|ADK86510.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii
DSM 2075]
Length = 151
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 72/141 (51%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R ++ A+HND P + +A IS +L ++L PL AG+V++VRG
Sbjct: 1 MKLSTRGRYGVRAMLELAMHNDDGPVPLRNLALRQEISAKYLEQLLIPLKGAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L I++ D+V++ E EC + C VG C + V +
Sbjct: 61 ARGGYQLAADPKDISLYDIVRSLEGPLAPVECVQDAEY-CQRVGGCTVHLVWGEMGQLLV 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
D L++ S+ +V + +I
Sbjct: 120 DFLSKMSLADMVVRQREKDQI 140
>gi|121999002|ref|YP_001003789.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
halophila SL1]
gi|121590407|gb|ABM62987.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
halophila SL1]
Length = 151
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y + + +IA A IS+ L K++ L + G ++T +GR
Sbjct: 1 MELTYYTDYALRVLLYAGAQGERRVPMREIARAYGISQDHLRKVVHRLARHGYLQTTQGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL I + DVV+ E+S + C CPL G C L L A + F
Sbjct: 61 SGGLRLGCAPGAIRVGDVVRLMEDSLELIHCDRG---PCPLCGHCSLKRALNGARDQFIQ 117
Query: 121 VLTQYSIECLVRNRSSIKKI 140
L ++E L+ + + +++
Sbjct: 118 HLDGVTLEELLADPGTAQQL 137
>gi|91788050|ref|YP_549002.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
gi|91697275|gb|ABE44104.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
Length = 178
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ + + P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQNSGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L R A +IT+ D++ + +E +C K +C G C + +
Sbjct: 61 PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGGRCMTHELWASLNSRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134
>gi|197105185|ref|YP_002130562.1| predicted transcriptional regulator [Phenylobacterium zucineum
HLK1]
gi|196478605|gb|ACG78133.1| predicted transcriptional regulator [Phenylobacterium zucineum
HLK1]
Length = 144
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+ + Y + + A ++ IA IS +L ++ L + G+V++
Sbjct: 1 MRLSTKGRYAVMAMADLARREGEAARAVALADIAARQEISLSYLEQLFARLRRKGLVKSA 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG RL R A+Q +I ++V A +E C + K C +
Sbjct: 61 RGPGGGYRLARTAEQTSIAEIVHAVDEPLRATRCANAGKGCMTRGERCLTHDLWADLGQQ 120
Query: 118 FFDVLTQYSIECLVRNR 134
L ++ ++ R
Sbjct: 121 IEHYLASVTLADVIGGR 137
>gi|329888279|ref|ZP_08266877.1| rrf2 family protein transcriptional regulator family protein
[Brevundimonas diminuta ATCC 11568]
gi|328846835|gb|EGF96397.1| rrf2 family protein transcriptional regulator family protein
[Brevundimonas diminuta ATCC 11568]
Length = 141
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL+Y D I++IA+A IS+ L K++ LV AG + +VRGR
Sbjct: 1 MRLTRYTDYAMRVLLYLGARQDRLCSIAEIAQAYGISQNHLMKVVSDLVNAGYLVSVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL RP DQI + VV+ TE+ F + +C C + +CGLT L +AL AF
Sbjct: 61 FGGVRLARPPDQINVGAVVRHTEDGFDLVDC-----GSCIIAPACGLTGALHQALAAFMK 115
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL Y++E L+ R + +F
Sbjct: 116 VLDGYTLEGLLSRRVDMAGLF 136
>gi|167563455|ref|ZP_02356371.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
gi|167570625|ref|ZP_02363499.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
Length = 161
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 56/131 (42%), Positives = 77/131 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHNVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P +I I DV++A+E F + ECF H C L C L +L AL A+F
Sbjct: 61 GGGVRLALPPGRIGIGDVIRASETDFRLVECFDRHTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLADLV 131
>gi|90581369|ref|ZP_01237165.1| hypothetical protein VAS14_18794 [Vibrio angustum S14]
gi|90437479|gb|EAS62674.1| hypothetical protein VAS14_18794 [Vibrio angustum S14]
Length = 144
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ E +S + KI+ L + G +ETVRG
Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGELTSITKVTEIYNVSRNHMVKIINKLGQLGYIETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + A+ I + DVV+A E + C C + +C L VL A AF
Sbjct: 61 KNGGIRLGKSAESIIVGDVVRAI-EPLQIVNCSLDF---CHITPACRLKGVLADAREAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L +Y++ LV + + + + +
Sbjct: 117 AELDKYTLLTLVEDNAPLLNLLS 139
>gi|319408357|emb|CBI82010.1| conserved hypothetical protein [Bartonella schoenbuchensis R1]
Length = 137
Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats.
Identities = 74/130 (56%), Positives = 99/130 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + D + I +IA+ ISELFLFKILQPLV+AG ++TVRGR
Sbjct: 1 MRLTKKTNYALRILMYCASNQDSLSSIPEIAKTYAISELFLFKILQPLVEAGFLQTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L +PA +I++ DVVK E++F +AECF +++CPLV SC L VL+ ALNAFFD
Sbjct: 61 NGGIKLAKPATEISVADVVKIIEDNFSMAECFDKTEVNCPLVNSCNLNIVLKNALNAFFD 120
Query: 121 VLTQYSIECL 130
VL+ SI L
Sbjct: 121 VLSTTSISDL 130
>gi|312884218|ref|ZP_07743927.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309367991|gb|EFP95534.1| hypothetical protein VIBC2010_10611 [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 168
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSQHNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL AD I I ++ A +ES +C DC C ++ +
Sbjct: 61 PGGGYRLGGEADTIAIGMIIAAVDESVDATKCQGRG--DCQGGARCLTHTLWHDLSSRIS 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
D L ++ L+++ ++
Sbjct: 119 DFLNNITLGELMKDNEVLE 137
>gi|215512187|gb|ACJ68081.1| NsrR [Moraxella catarrhalis O35E]
gi|215512191|gb|ACJ68084.1| NsrR [Moraxella catarrhalis 7169]
gi|215512196|gb|ACJ68088.1| NsrR [Moraxella catarrhalis]
gi|326561869|gb|EGE12204.1| transcriptional regulator NsrR [Moraxella catarrhalis 7169]
gi|326563304|gb|EGE13571.1| transcriptional regulator NsrR [Moraxella catarrhalis 46P47B1]
gi|326563419|gb|EGE13684.1| transcriptional regulator NsrR [Moraxella catarrhalis 12P80B1]
gi|326565958|gb|EGE16119.1| transcriptional regulator NsrR [Moraxella catarrhalis 103P14B1]
gi|326569208|gb|EGE19269.1| transcriptional regulator NsrR [Moraxella catarrhalis BC7]
gi|326571881|gb|EGE21886.1| transcriptional regulator NsrR [Moraxella catarrhalis BC8]
gi|326575393|gb|EGE25318.1| transcriptional regulator NsrR [Moraxella catarrhalis 101P30B1]
gi|326577989|gb|EGE27853.1| transcriptional regulator NsrR [Moraxella catarrhalis O35E]
Length = 177
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R
Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---------------------- 96
G+ GG+RL I + ++V+ TE FFV CFA
Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120
Query: 97 -------IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
+ C + +C L V +A AF VL Y++ ++ N ++ +
Sbjct: 121 LSVGQPAMSCVISPACHLKQVFAEATKAFLQVLDSYTLADIISNADELRHCLS 173
>gi|255066423|ref|ZP_05318278.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
sicca ATCC 29256]
gi|255049303|gb|EET44767.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
sicca ATCC 29256]
Length = 148
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P QI I ++ A E+ +C + K +C C +
Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQCSS--KANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L+ +++ ++ ++S
Sbjct: 119 DYLSSVTLQSIIEQKNS 135
>gi|229826314|ref|ZP_04452383.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC
49176]
gi|229789184|gb|EEP25298.1| hypothetical protein GCWU000182_01686 [Abiotrophia defectiva ATCC
49176]
Length = 153
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R ++ A+H D +S IA ISE +L +++ L KAGIV ++RG
Sbjct: 1 MKISTKGRYGLRAVLDIAMH-DEAASVSSIAARQFISENYLERLIAMLKKAGIVNSLRGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L RPA++I++ +V++A E +C C +C V ++ ++
Sbjct: 60 QGGYVLARPAEEISVGEVLRALEGDLNPVDCSEIDGSLCEGSDTCVTKFVWKRISDSIKQ 119
Query: 121 VLTQYSIECLVRNRSSI 137
+ I L +
Sbjct: 120 AVDNLMISELANEGKHL 136
>gi|330993730|ref|ZP_08317664.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329759304|gb|EGG75814.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 151
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y IH D I ++A+A ISE L KI+ L + G +ET+RGR
Sbjct: 1 MRLTLHTDYALRTLLYLGIHTDRLTSIREVAQAYGISENHLVKIIHRLGQGGFIETIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI------DCPLVGSCGLTSVLRKA 114
GG+RL RPA I I DVV+ TEE + C C L +C L VL +A
Sbjct: 61 NGGLRLGRPAASILIGDVVRYTEEDMALVNCMQPADPERPDMKPCILADACRLRGVLGEA 120
Query: 115 LNAFFDVLTQYSIECLVRNRS 135
L +F VL +Y++ ++ +R
Sbjct: 121 LGSFIAVLDRYTLADVITDRE 141
>gi|283852223|ref|ZP_06369496.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
gi|283572449|gb|EFC20436.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
Length = 145
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG+R+L+ A+H + P RI IA+ IS +L ++++ L KAG + + RG
Sbjct: 1 MQLTTRSRYGLRMLIDIALHGSERPVRIQDIAKRRNISVKYLEQLIRALKKAGFIHSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I + DVV+A E + EC + C + C + +A + F
Sbjct: 61 PKGGHILAMAPEDIRVGDVVRALEVRPELTECVGNPDA-CLIASDCVTRQIWARATASLF 119
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L + L+ +I
Sbjct: 120 KELDAIHVSDLLVQARK-SEILG 141
>gi|254468307|ref|ZP_05081713.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium
KB13]
gi|207087117|gb|EDZ64400.1| transcriptional regulator, BadM/Rrf2 family [beta proteobacterium
KB13]
Length = 159
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + P + ++E IS +L ++ L K IV ++RG
Sbjct: 1 MKLTTKGRFAVSAILDIALNQKNGPVTLLAVSERQGISLSYLEQLFSKLRKGEIVSSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG R+ + IT+ ++ A +E +C +C C +
Sbjct: 61 PGGGYRIKKAYTDITVRQIISAVDEKIDATQC--GGTENCHDGNRCMTHDLWISVNRKIL 118
Query: 120 DVLTQYSIECLVRNRS 135
L S++ L N
Sbjct: 119 SYLDSLSLQDLYDNHQ 134
>gi|226953865|ref|ZP_03824329.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
gi|226835348|gb|EEH67731.1| transcriptional regulator [Acinetobacter sp. ATCC 27244]
Length = 150
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I+ IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + ++V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGLRLNPEAKSLKLGEIVRTLQGHQQIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRN 133
L QY++ ++++
Sbjct: 118 SLNQYTLGEVIQH 130
>gi|91774995|ref|YP_544751.1| BadM/Rrf2 family transcriptional regulator [Methylobacillus
flagellatus KT]
gi|91708982|gb|ABE48910.1| transcriptional regulator, BadM/Rrf2 family [Methylobacillus
flagellatus KT]
Length = 149
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/137 (37%), Positives = 75/137 (54%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD G+RVLMY + H + P IS+IA I L K++ L K G ++T RG
Sbjct: 1 MQLTKFTDLGLRVLMYVSQHERNKPITISEIATQFNIPRNHLIKVVTFLNKTGWIQTTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL + + V++ E S + C CPL G CGL L LNAF+
Sbjct: 61 PNGGLRLGTDPASLHLGHVIRVLEGSASLVNCQE---PPCPLAGQCGLKHALDLGLNAFY 117
Query: 120 DVLTQYSIECLVRNRSS 136
D + Y+++ ++RNR++
Sbjct: 118 DYMDTYTLQDVIRNRTA 134
>gi|71083441|ref|YP_266160.1| transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
gi|91762136|ref|ZP_01264101.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002]
gi|71062554|gb|AAZ21557.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1062]
gi|91717938|gb|EAS84588.1| Transcriptional regulator [Candidatus Pelagibacter ubique HTCC1002]
Length = 141
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + L A N P + I+ IS FL +I L K IV+++RG
Sbjct: 1 MKLTSKGRYAVMALADLAKFNSVNPVSLRDISLRQGISLDFLEQIFSKLKKYNIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L + ++I + +++ A +E +C K C C ++ +
Sbjct: 61 TNGGYILNKEPEEIKLANILSAVDEEVKTVQCKKESKKGCNSKTTKCITHNLWDELEVHI 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
Q +++ L+ N S +
Sbjct: 121 NHFFEQKNLKDLISNSSESR 140
>gi|146277178|ref|YP_001167337.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17025]
gi|145555419|gb|ABP70032.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17025]
Length = 144
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 82/141 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ +R LM+CAI+ R +++A AC SE L +++ L + G + TVRGR
Sbjct: 1 MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA+ I + DV + E + ECF+ + CPL SC L L AL+AF+
Sbjct: 61 CGGLALGRPAENIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALSAFYG 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L + S+ +V+ + ++++
Sbjct: 121 SLDKLSLRDMVQENTELEELL 141
>gi|94984606|ref|YP_603970.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
geothermalis DSM 11300]
gi|94554887|gb|ABF44801.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
geothermalis DSM 11300]
Length = 153
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + ++E IS+ +L +I L +AG +++VRG
Sbjct: 1 MWVSTKAQYGLRALIEIGRRGGEAVPLKDVSERQGISQHYLEQIASNLRRAGFIKSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA I +VV A E S C + C CG + + A D
Sbjct: 61 HGGYRLARPASAINAYEVVTAMEGSIAPVSCVEEDHV-CDKGNVCGTLELWHRVDTALRD 119
Query: 121 VLTQYSIECLVRN--RSSIKKIF 141
VL ++ L+ + R ++
Sbjct: 120 VLGATTLADLIADSERQEHARLL 142
>gi|310779512|ref|YP_003967845.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
DSM 2926]
gi|309748835|gb|ADO83497.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
DSM 2926]
Length = 140
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M ++ R YG+R L+Y A N D RI +I++ IS +L +IL L K I+E
Sbjct: 1 MKISTRIRYGLRALVYIAEQNRDFDRLVRIKEISKDQNISVQYLEQILFKLKKENIIEGK 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG +L +I + + + + + +C + + + C + + + NA
Sbjct: 61 RGPNGGYKLIGDPKKINVFRLYEILDSDVKIVDCNENTENKSCVEEKCRTSCLWSRLDNA 120
Query: 118 FFDVLTQYSIECLVRNRSSI 137
D+L + +++ L+ N+ +
Sbjct: 121 LSDILKETTLDDLINNKEMM 140
>gi|294651640|ref|ZP_06728944.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
ATCC 19194]
gi|292822489|gb|EFF81388.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
ATCC 19194]
Length = 150
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 75/133 (56%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I+ IA+ +S+ L K++ + K + T+RG+
Sbjct: 1 MQLNKFTDYALRILMYVARPSDVPYTIADIAKDLHVSQNHLVKVVHFMGKQQWIVTIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A + + ++V+ + + EC + C L CGL +L +AL +F+
Sbjct: 61 GGGLRLNPEAKSLKLGEIVRTLQGHQHIVEC---NTPPCVLRSHCGLKGILDQALESFYQ 117
Query: 121 VLTQYSIECLVRN 133
L QY++ ++++
Sbjct: 118 SLNQYTLGEVIQH 130
>gi|256005574|ref|ZP_05430534.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|255990482|gb|EEU00604.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|316941505|gb|ADU75539.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 1313]
Length = 149
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG+R ++ A+++ ++ IAE IS +L ++ L K+G+V++ +G
Sbjct: 1 MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+GG L I + +++A E V + + + C +V K +
Sbjct: 61 AQGGYMLSEDPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+++ ++E L + I
Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142
>gi|315924766|ref|ZP_07920983.1| iron-sulfur cluster assembly transcription regulator IscR
[Pseudoramibacter alactolyticus ATCC 23263]
gi|315621665|gb|EFV01629.1| iron-sulfur cluster assembly transcription regulator IscR
[Pseudoramibacter alactolyticus ATCC 23263]
Length = 139
Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + A H P I +IA+ S+ +L ++ L KAG++ ++RG
Sbjct: 1 MKLSTKGQYGVLAMCELASHYGKGPMSIKEIADKQHFSDAYLEQLFSKLKKAGLIRSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R I + +V+ A E C A +DC SC ++ N+
Sbjct: 61 AHGGYQLTREPSAIVVGEVIDAVEGPIEFCGCDAEA-VDCNRAQSCPTVNLWMDVQNSIR 119
Query: 120 DVLTQYSIECLV 131
V+ S++ L+
Sbjct: 120 SVIDHRSLQDLI 131
>gi|125974347|ref|YP_001038257.1| BadM/Rrf2 family transcriptional regulator [Clostridium
thermocellum ATCC 27405]
gi|281418894|ref|ZP_06249912.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|125714572|gb|ABN53064.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum ATCC 27405]
gi|281407351|gb|EFB37611.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
Length = 149
Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG+R ++ A+++ ++ IAE IS +L ++ L K+G+V++ +G
Sbjct: 1 MRFSTKGRYGLRAMIDLAVYSNGEHVTLASIAERQGISTNYLEQVFSTLRKSGLVKSAKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+GG L I + +++A E V + + + C +V K +
Sbjct: 61 AQGGYMLSEVPSDIKVGRILRALEGPLSVTDEDDEEVSENESSIRKCIRINVWEKMNKSL 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+++ ++E L + I
Sbjct: 121 NELVDSITLEDLAEDYRKRNGI 142
>gi|121605191|ref|YP_982520.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
naphthalenivorans CJ2]
gi|120594160|gb|ABM37599.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
naphthalenivorans CJ2]
Length = 178
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ + N+ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L R A +IT+ D++ + +E +C K +C C + +
Sbjct: 61 PGGGYTLGRKASEITVADIIVSVDEPIDATQC--GGKENCLGDGSRCMTHDLWSSLNSRM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L S++ LV ++
Sbjct: 119 VEFLDSVSLQKLVDDQ 134
>gi|89900960|ref|YP_523431.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
ferrireducens T118]
gi|89345697|gb|ABD69900.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
ferrireducens T118]
Length = 178
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ + ++ P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQSNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
GG L R +IT+ +++ + +E C K +C G+ C +
Sbjct: 61 PGGGYTLARNPAEITVAEIITSVDEPIDATHCAG--KENCLGEGARCMTHDLWTSLNTKM 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +++ LV ++
Sbjct: 119 VEFLDSVTLQKLVDDQ 134
>gi|83310417|ref|YP_420681.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82945258|dbj|BAE50122.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 140
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL++ H+ I++IAE IS+ L K++ L ++G +ETVRG+
Sbjct: 1 MRLTLHTDYALRVLVHVGRHDGDLVTINEIAECYGISKNHLTKVVHQLGRSGYLETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL R + + + + ++ TEE F + C +C L C L L+AFF
Sbjct: 61 YGGVRLLRQPEDVKLGEFIRETEEDFALVRCMRCDTPDECRLNAGCIARDALSSGLSAFF 120
Query: 120 DVLTQYSIECLVRNRSS 136
VL Y++ ++ +
Sbjct: 121 KVLDGYTLADMLEHERQ 137
>gi|156932409|ref|YP_001436325.1| transcriptional repressor NsrR [Cronobacter sakazakii ATCC BAA-894]
gi|156530663|gb|ABU75489.1| hypothetical protein ESA_00188 [Cronobacter sakazakii ATCC BAA-894]
Length = 166
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TD+G+R L+Y A + IS++ E +S + KI+ L +AG V VRG+
Sbjct: 27 QLTSFTDFGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGK 86
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA I I DVV+ E + C ++ C + +C L VL A+ F
Sbjct: 87 NGGIRLGKPAATIRIGDVVREL-EPLSIVNCSSAF---CHITPACRLKQVLGDAVARFLQ 142
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV+ + K+
Sbjct: 143 ELDNYTLADLVQENQPLYKLL 163
>gi|296116983|ref|ZP_06835584.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295976465|gb|EFG83242.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 167
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y D I IA+ ISE L K++ L + G + T RGR
Sbjct: 1 MRLTLYTDYALRTLLYLGAKPDTRVAIHDIAQTYDISENHLVKVVHKLGRGGFIVTKRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R I I D+V+ TEE + C K C L G C L ++ +ALNAF
Sbjct: 61 NGGLLLARAPQDIRIGDIVRYTEEDMGIVACNQE-KGSCRLAGVCRLQGLMGEALNAFMS 119
Query: 121 VLTQYSIECLVRNRSSIK 138
VL + ++ ++ + ++
Sbjct: 120 VLDRRTLADVMTHPHLLQ 137
>gi|114328337|ref|YP_745494.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
gi|114316511|gb|ABI62571.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
Length = 141
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T+ TDY IRV++Y +++ D +I++IA IS L K++Q LV AG+V +VRGR
Sbjct: 1 MKFTRYTDYAIRVMIYLSVNQDRVVQIAEIARVYDISHNHLMKVVQGLVSAGLVSSVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPADQIT+ ++V+ TE+ F + EC DC C S+L +A AF
Sbjct: 61 SGGLLLGRPADQITVGELVRRTEDGFHLVECA-----DCAARPGCQAPSILAEATKAFLA 115
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++ +VR++S FN
Sbjct: 116 VLDRYTLSDVVRDKSIAHAAFN 137
>gi|296112360|ref|YP_003626298.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4]
gi|295920054|gb|ADG60405.1| transcriptional regulator NsrR [Moraxella catarrhalis RH4]
gi|326568908|gb|EGE18977.1| transcriptional regulator NsrR [Moraxella catarrhalis BC1]
Length = 177
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 49/173 (28%), Positives = 80/173 (46%), Gaps = 31/173 (17%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ +D+ +RVL+Y A +ND RI IA++ IS+ L K++ L K +V++ R
Sbjct: 1 MRLTQYSDFALRVLIYLATIPNNDELVRIDDIAKSYGISKNHLTKVIHQLSKLKVVDSAR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---------------------- 96
G+ GG+RL I + ++V+ TE FFV CFA
Sbjct: 61 GKNGGIRLAMHPKNINVGNIVRQTEPDFFVVACFADEPAQDDLMTDNLMTNDLRKIKTLD 120
Query: 97 -------IDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
+ C + +C L V +A AF VL Y++ ++ N ++ +
Sbjct: 121 LSVGQPAMSCVISPACHLKQVFAEAAKAFLQVLDSYTLADIISNADELRHCLS 173
>gi|332655322|ref|ZP_08421062.1| iron-sulfur cluster assembly transcription factor IscR
[Ruminococcaceae bacterium D16]
gi|332515827|gb|EGJ45437.1| iron-sulfur cluster assembly transcription factor IscR
[Ruminococcaceae bacterium D16]
Length = 142
Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ R Y +RV++ A H +D + ++A+ IS +L +I+ L K +VE V G+
Sbjct: 2 ISTRGRYALRVMIDLAEHADDGYIPMKEVAQRQGISLKYLERIMPALSKNNLVEGVHGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG RL R + T ++++ E S C C +C ++ +K +
Sbjct: 62 GGYRLSRKPEDYTAGEILRLVEGSLAPVACLECGAEPCSRQDTCKTIAMWKKFYDLVNGY 121
Query: 122 LTQYSIECLV 131
++ L
Sbjct: 122 FDHITVADLA 131
>gi|291523627|emb|CBK81920.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
GD/7]
Length = 140
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +RV+ Y A++ D + +IAEA IS +L I + L K +E GR
Sbjct: 4 ISSKGRYALRVMTYLAVNADREFVPLKEIAEAESISLKYLESIARMLSKEHYIEGTSGRG 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L R + + D+++ TE + C + C C V + N D
Sbjct: 64 GGYHLTRKPEAYKVGDILRLTEGTLAPVSCLKDNAEPCGRAELCCTLPVWQGLSNVITDY 123
Query: 122 LTQYSIECLV 131
L ++ +
Sbjct: 124 LDNMTLADVA 133
>gi|15615687|ref|NP_243991.1| hypothetical protein BH3125 [Bacillus halodurans C-125]
gi|10175747|dbj|BAB06844.1| BH3125 [Bacillus halodurans C-125]
Length = 142
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 65/141 (46%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + +Y +R L+ A + + ++++ + +L K+L L + + RG+
Sbjct: 1 MKVSSKGEYCLRALIILAKQPERRFTVHELSKHTLVPPPYLEKLLSQLRVLSYITSKRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A I++ +V++ E C + + C L C L + +
Sbjct: 61 GGGYQLSRDARDISMGEVIRQLEGPLAPMSCVSVTSYQSCELEQGCLLKPLWGLVRDTVA 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+VL Q ++ L+ N+ +K+
Sbjct: 121 NVLDQTTLADLIENKLGQRKV 141
>gi|229917143|ref|YP_002885789.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp.
AT1b]
gi|229468572|gb|ACQ70344.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp.
AT1b]
Length = 146
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ DY +R LMY A + I ++A+ IS+ + K++ L K G +E+VRGR
Sbjct: 1 MRLTQTCDYALRTLMYSATFSHRLVTIQEVADQYNISKNHVMKVVYELGKHGYLESVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RP D I + +VV+ T E F + ECF + C + +C L VL +A+ AF
Sbjct: 61 GGGFRLARPMDDINVGEVVR-TMEPFELVECFGEGR--CVIAPACDLRGVLNEAMLAFLH 117
Query: 121 VLTQYSIECLVRNR-SSIKKIFN 142
VL +Y+I LV NR + + +
Sbjct: 118 VLDRYTIADLVVNRTNELAMLLG 140
>gi|167581217|ref|ZP_02374091.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
gi|167619304|ref|ZP_02387935.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
gi|257138520|ref|ZP_05586782.1| Rrf2 family protein [Burkholderia thailandensis E264]
Length = 161
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 54/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++++E F + ECF + C L C L +L AL A+F
Sbjct: 61 GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLADLV 131
>gi|226226792|ref|YP_002760898.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
gi|226089983|dbj|BAH38428.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
Length = 152
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 76/143 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +D +R LM + D + IA +S L KI+Q L + G VETVRGR
Sbjct: 1 MRLTRFSDNALRCLMVLGLEPDALIPVHSIAVRMNMSHEHLVKIVQRLAELGYVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R IT+ +V+ TE++ + ECF CP+ +C L +L +AL+AF
Sbjct: 61 NGGVRLVRSPQHITLGALVRETEDNLALVECFEPESNTCPIAPACVLARMLDEALSAFLA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL Y++ ++ + + A
Sbjct: 121 VLDGYTLADALKPGRKLTTLMRA 143
>gi|19223865|gb|AAL86367.1|AF332574_4 putative RRF2 protein [Desulfovibrio gigas]
Length = 150
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R+ YG R+++ A+H+ P RIS I++ +S +L K+++PL +AG +++ RG
Sbjct: 1 MKLSTRSRYGTRMVLDIAMHSQAGPVRISDISKRQGVSVKYLEKLIRPLKQAGFIKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L ++I + VV+A E + EC + CP+ G C V +A A
Sbjct: 61 PRGGHVLSDLPERIAVGAVVRAMEGEMALTECAKDASV-CPISGDCLTRKVWIEATRAML 119
Query: 120 DVLTQYSIECLVRNRS 135
D L + L+R
Sbjct: 120 DRLDAITFLDLMREAE 135
>gi|82701827|ref|YP_411393.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
multiformis ATCC 25196]
gi|82409892|gb|ABB74001.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
multiformis ATCC 25196]
Length = 172
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + L+ A+ P +++I++ IS +L ++ L G+V++VRG
Sbjct: 1 MRLTTKGRFAVTALLDLALQRQTRPVTLAEISQRQQISLSYLEQLFAKLRSRGLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + Q+++ +++ A +E +C + K +C C + K F
Sbjct: 61 PGGGYCLAKDMGQVSVAEIILAVDEPIDSTQC--NGKENCHNDRKCMTHDLWTKLNELIF 118
Query: 120 DVLTQYSIECLVR 132
D L +++ LV
Sbjct: 119 DHLGAVTLKQLVD 131
>gi|238927889|ref|ZP_04659649.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
gi|238884222|gb|EEQ47860.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
Length = 149
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+H + IA + ISE +L +++ PL +AG+VE+VRG
Sbjct: 3 MKLSTKGRYSVTALYELALHYGKGVVPLHAIAASQGISEHYLEQLMVPLRRAGLVESVRG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
+GG L P Q+TI ++ A E + +C + C G+C + +
Sbjct: 63 AQGGYTLALPPGQVTIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 122
Query: 116 NAFFDVLTQYSIECLVRN 133
+ VL ++ LV+
Sbjct: 123 ESINSVLNNIALSDLVQR 140
>gi|92118751|ref|YP_578480.1| BadM/Rrf2 family transcriptional regulator [Nitrobacter
hamburgensis X14]
gi|91801645|gb|ABE64020.1| transcriptional regulator, BadM/Rrf2 family [Nitrobacter
hamburgensis X14]
Length = 142
Score = 120 bits (302), Expect = 6e-26, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT DY +R+LMY A H+D I + A IS L K+ L +AG ++ VRGR
Sbjct: 1 MRLTSFFDYTLRLLMYAATHSDRLITIEETAGVYGISRTHLMKVANQLTRAGYLKAVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + ++I + DV+ ATE F + ECF+ CP+ SC L + LR+AL AF
Sbjct: 61 SGGLALAKRPNRIKLGDVLCATEPDFALVECFS-ANNHCPISSSCRLRAPLREALAAFTA 119
Query: 121 VLTQYSIECLV 131
L +Y++ L+
Sbjct: 120 TLDRYTLADLI 130
>gi|77463446|ref|YP_352950.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
2.4.1]
gi|126462302|ref|YP_001043416.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|221639304|ref|YP_002525566.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
KD131]
gi|332558324|ref|ZP_08412646.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
sphaeroides WS8N]
gi|77387864|gb|ABA79049.1| transcriptional regulator / transcriptional regulator, BadM/Rrf2
family [Rhodobacter sphaeroides 2.4.1]
gi|126103966|gb|ABN76644.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17029]
gi|221160085|gb|ACM01065.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides KD131]
gi|332276036|gb|EGJ21351.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
sphaeroides WS8N]
Length = 144
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 52/141 (36%), Positives = 81/141 (57%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ +R LM+CAI+ R +++A AC SE L +++ L + G + TVRGR
Sbjct: 1 MRLTTRTNLAMRTLMFCAINEGRVVRKAEVAAACNASENHLAQVIHGLAQKGFLRTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA++I + DV + E + ECF+ + CPL SC L L AL AF+
Sbjct: 61 CGGLALGRPAEKIVVGDVFRTFESNLPFTECFSKKENKCPLTPSCRLKCALNDALAAFYG 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L + S+ +V+ + ++ +
Sbjct: 121 TLDKLSLRDMVQENTELEDLL 141
>gi|163868066|ref|YP_001609270.1| iron-responsive transcriptional regulator [Bartonella tribocorum
CIP 105476]
gi|161017717|emb|CAK01275.1| conserved hypothetical protein [Bartonella tribocorum CIP 105476]
Length = 144
Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats.
Identities = 71/130 (54%), Positives = 100/130 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +R+S+IA+A +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1 MRLTKQTNYALRMLMYCADNQGSLSRVSEIAKAYAVSELFLFKILQPLVQAGFIQTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA +I++ DV+K TE++F +AECF + + CPL+ C L L+KAL+AFFD
Sbjct: 61 NGGVKLAKPATEISVADVLKVTEDNFSLAECFDNAEPTCPLIDFCSLNIALQKALSAFFD 120
Query: 121 VLTQYSIECL 130
VL+ S+ L
Sbjct: 121 VLSVISLADL 130
>gi|282882782|ref|ZP_06291389.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis
315-B]
gi|300813432|ref|ZP_07093777.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp.
oral taxon 836 str. F0141]
gi|281297443|gb|EFA89932.1| HTH-type transcriptional regulator IscR [Peptoniphilus lacrimalis
315-B]
gi|300512449|gb|EFK39604.1| putative HTH-type transcriptional regulator CymR [Peptoniphilus sp.
oral taxon 836 str. F0141]
Length = 131
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + + ++ P + IA+ +SE +L ++ L K G+V +VRG
Sbjct: 1 MKLSTKGRYGLMAMYRLSQNSGKGPMSLKDIADIENLSEAYLEQLFALLKKRGLVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ++I I D++ A E ++ C + +++C + C +L++ +
Sbjct: 61 AGGGYELAKAPNEIHIGDIINALEGDIKLSCCDTNKRLECAKINGCPTKDILKELQSRME 120
Query: 120 DVLTQYSIECL 130
+V+ ++ +
Sbjct: 121 EVMDSLTLADM 131
>gi|83720448|ref|YP_442322.1| Rrf2 family protein [Burkholderia thailandensis E264]
gi|83654273|gb|ABC38336.1| Rrf2 family protein [Burkholderia thailandensis E264]
Length = 164
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 54/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 4 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++++E F + ECF + C L C L +L AL A+F
Sbjct: 64 GGGVRLALPPERIGIGDVIRSSETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 123
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 124 ELDGATLADLV 134
>gi|86148482|ref|ZP_01066771.1| hypothetical protein MED222_02502 [Vibrio sp. MED222]
gi|218708942|ref|YP_002416563.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32]
gi|85833722|gb|EAQ51891.1| hypothetical protein MED222_02502 [Vibrio sp. MED222]
gi|218321961|emb|CAV17962.1| hypothetical protein VS_0945 [Vibrio splendidus LGP32]
Length = 147
Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T+ TDY +RVL+Y AI+N + I IA + IS+ L KI+Q L G + RG+
Sbjct: 1 MHITRYTDYSLRVLIYLAINNQSLSTIGDIANSYGISKNHLMKIVQQLNLKGHLIATRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L QI I +V+ E+ + ECF C + +C L ++ +A F+
Sbjct: 61 NGGLKLSCHPSQINIGTLVRELEDKRNLVECFGED-NSCVITPNCQLKTIFAEAQECFYK 119
Query: 121 VLTQYSIECLVRNRSSIK 138
L YS++ L+ S K
Sbjct: 120 CLDAYSLQDLLGEGHSYK 137
>gi|39996739|ref|NP_952690.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
gi|39983620|gb|AAR35013.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
Length = 136
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A I IS+IAEA + + FL KILQ K GIV++ RG
Sbjct: 1 MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +IT+ +VV+A E C C CG+ V RK
Sbjct: 61 AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLGSG-TCERDNICGVHPVWRKVQERVA 119
Query: 120 DVLTQYSIECLVR 132
+ L ++E L
Sbjct: 120 ETLDAVTLEELAA 132
>gi|110834981|ref|YP_693840.1| transcriptional regulator [Alcanivorax borkumensis SK2]
gi|110648092|emb|CAL17568.1| Transcriptional regulator, putative [Alcanivorax borkumensis SK2]
Length = 143
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y ++ +D P I +IA+A IS + K+ Q LV+ G V+++RG
Sbjct: 1 MQLTTHTDYALRTLIYLSLRHDKLPTTIQEIADAYHISNNHVAKVAQTLVQLGYVQSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ + +PA++I + ++++ T E+ + +CF + CP+ +C L + L KA AF
Sbjct: 61 RSGGLVMAKPANEINVGELIRQT-ENLKLLDCFGTE-SSCPIDPACKLKNALGKAQAAFL 118
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ N ++ +
Sbjct: 119 QTLDQYNLADFTDNSDELRILL 140
>gi|23097747|ref|NP_691213.1| hypothetical protein OB0292 [Oceanobacillus iheyensis HTE831]
gi|81747143|sp|Q8ETG9|NSRR_OCEIH RecName: Full=HTH-type transcriptional regulator nsrR
gi|22775971|dbj|BAC12248.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 147
Score = 120 bits (301), Expect = 8e-26, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 82/143 (57%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+L K TDY +RVL++ + +D I +IAE IS+ L K++ L K +V T+RG
Sbjct: 1 MNLKKYTDYALRVLIFTGLKSDQELANIKEIAEVYQISQEHLRKVVHELTKMELVVTIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG++L +PA +I I +++ E F + ECF C + C L V+ KAL AFF
Sbjct: 61 RNGGIKLAKPASEINIGLLIRQLENDFVLLECFDKGTNHCVISPGCTLKHVINKALVAFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL +Y++E L++N + +
Sbjct: 121 KVLEEYTLEDLIKNEEELLALMG 143
>gi|302335472|ref|YP_003800679.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
7084]
gi|301319312|gb|ADK67799.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
7084]
Length = 141
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + Y +RV+ A H + + +++ IS +L +++ + KAG VE++RG+ G
Sbjct: 5 FSTKGRYALRVMGDLATH-EGWVSLGDVSKRQGISRKYLEQVVSRMHKAGYVESLRGKGG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
G RL R + T+ ++++A E S C + CP SC ++ R
Sbjct: 64 GYRLTRAPEDYTLGEILRAAEGSLAPVACLDCTNDEICPQADSCPTVTIWRDLGRVTAGF 123
Query: 122 LTQYSIECLVRN 133
L ++ +V +
Sbjct: 124 LDSRTLADIVGD 135
>gi|299131984|ref|ZP_07025179.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
gi|298592121|gb|EFI52321.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
Length = 149
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 3/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +DY +R+LMY A+ + I + AEA IS L K+ L +AG ++ VRG
Sbjct: 1 MRLTNFSDYALRILMYAAVVPDGRLITIEETAEAYGISRAHLMKVANQLTRAGYMKAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L + D+I + DV++ATE F + EC C + C L L +AL AF
Sbjct: 61 RSGGLTLAKRPDRIRLSDVLRATEPDFALVECMT-ADNRCMISPRCRLRGALNEALAAFL 119
Query: 120 DVLTQYSIECLV-RNRSSIKKIFNAG 144
+ L Y++ L+ + S + + G
Sbjct: 120 ETLDGYTLADLILSPKDSARPLLAIG 145
>gi|332139491|ref|YP_004425229.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype']
gi|327549513|gb|AEA96231.1| YhdE (NsrR) [Alteromonas macleodii str. 'Deep ecotype']
Length = 150
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 76/135 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + T+ RVL+Y A+ + + S+IA+A +S L K++ L+ G + +GR
Sbjct: 1 MKINTFTNLAFRVLIYLALRKNQTVKTSEIADAYFVSFNHLKKVITLLIDQGYIIGTKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + A+ I I +V + T E +AECFAS C + +C L ++L+ A + F
Sbjct: 61 GGGIRLAKEANLINIGEVFRLTIEDVALAECFASPTNKCVISPTCRLKTILQDAADKFIS 120
Query: 121 VLTQYSIECLVRNRS 135
L Q+++ LV++R
Sbjct: 121 ELDQFTLHDLVKDRE 135
>gi|308048583|ref|YP_003912149.1| BadM/Rrf2 family transcriptional regulator [Ferrimonas balearica
DSM 9799]
gi|307630773|gb|ADN75075.1| transcriptional regulator, BadM/Rrf2 family [Ferrimonas balearica
DSM 9799]
Length = 144
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +D+ R L+Y + + IS++ E +S + K++ L AG V TVRG
Sbjct: 1 MQLTSFSDFAFRALIYLGTLPKEELTSISRVTEVYGVSRNHMVKVINKLGHAGFVTTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG+RL + +I + DVV+A E + +C + C +V +C L VL +A NAF
Sbjct: 61 KKGGIRLAKAPAEIGLGDVVRAL-EPLKLVDCGSPF---CHIVPACRLKGVLEEATNAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L QY++ ++ N + +
Sbjct: 117 AALDQYTLADMLSNNPHLVTLL 138
>gi|261377488|ref|ZP_05982061.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
cinerea ATCC 14685]
gi|269146218|gb|EEZ72636.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
cinerea ATCC 14685]
Length = 148
Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAIKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P QI I ++ A E+ +C + K +C C +
Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQCSS--KANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L+ +++ ++ ++S
Sbjct: 119 DYLSSVTLQSIIEQKNS 135
>gi|157828690|ref|YP_001494932.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933410|ref|YP_001650199.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
gi|157801171|gb|ABV76424.1| hypothetical protein A1G_04620 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908497|gb|ABY72793.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
Length = 142
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 64/129 (49%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R L+Y A + + +I+E IS L K++ L + G + + +G+
Sbjct: 1 MQLTSFTDYGLRSLIYLASTPERICSVKEISEYHNISLNHLIKVIHRLAQLGYINSSKGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
G ++L + + D+++ E + + ECF + C + S +++A AF
Sbjct: 61 GGRIKLAFSPSSMNLGDIIEKFEPNMDIVECFNKNTNSCRITNSYQFKHFIKEASEAFIK 120
Query: 121 VLTQYSIEC 129
L Y++E
Sbjct: 121 TLNNYTLED 129
>gi|148264218|ref|YP_001230924.1| BadM/Rrf2 family transcriptional regulator [Geobacter
uraniireducens Rf4]
gi|146397718|gb|ABQ26351.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
uraniireducens Rf4]
Length = 137
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K GIV + RG
Sbjct: 2 MELTRKGEYAIRGIIYLAQQQPGKVSLISEIAHASDVPQTFLAKIFQSFAKLGIVNSSRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA IT+ +VV+A E C C G C + V R +
Sbjct: 62 TGGGFTLGRPAASITLREVVEAVEGPIIPNRCLMGTGY-CDRGGHCNVHQVWRTVQSQVV 120
Query: 120 DVLTQYSIECLVRNRS 135
++L +IE L + +
Sbjct: 121 NILDSVTIEELAKQKQ 136
>gi|182678939|ref|YP_001833085.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634822|gb|ACB95596.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 150
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 5/148 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK-AGIVETVRG 59
M LT TDY +R L++ +H + I +IA+A ISE L K++Q L + G +ET RG
Sbjct: 1 MRLTLHTDYALRTLIFLGLHQERRVSIHEIADAYGISENHLMKVIQKLGRPDGFIETTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNA 117
R GG+RL R D+I + DVV+ TEE + CF A C L G CGL S+L +AL A
Sbjct: 61 RGGGLRLARAPDKIRLDDVVRYTEEDMAIVACFQQAKDHEACVLTGYCGLQSILGEALAA 120
Query: 118 FFDVLTQYSIECLVR--NRSSIKKIFNA 143
F VL +Y++ L+ +R+ I ++
Sbjct: 121 FLAVLQRYTLADLLSSPDRAQIMRLLTP 148
>gi|56965514|ref|YP_177247.1| transcriptional regulator [Bacillus clausii KSM-K16]
gi|56911759|dbj|BAD66286.1| transcriptional regulator [Bacillus clausii KSM-K16]
Length = 153
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 73/141 (51%), Gaps = 3/141 (2%)
Query: 2 HLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDY +R L+Y ++ + ++ IA IS L K++ L + G++ T+RG+
Sbjct: 4 QLTTYTDYALRALLYVGSLPDGERTQVKDIASVYNISLNHLQKVIHDLGRKGVLHTIRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L I I +V+ E + ECF +C + SC L L KA +AFF
Sbjct: 64 HGGIALAHKPVDINIGKLVREL-EDVQLVECFRD-NNNCLISNSCKLKEALAKAQHAFFQ 121
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL QYS+ + N++ + +F
Sbjct: 122 VLDQYSLADFLENKADLYALF 142
>gi|125974348|ref|YP_001038258.1| BadM/Rrf2 family transcriptional regulator [Clostridium
thermocellum ATCC 27405]
gi|256005573|ref|ZP_05430533.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|281418895|ref|ZP_06249913.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|125714573|gb|ABN53065.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum ATCC 27405]
gi|255990481|gb|EEU00603.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|281407352|gb|EFB37612.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|316941506|gb|ADU75540.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 1313]
Length = 153
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++ AIH+ + + IAE C +SE ++ +I L +AGIVE++RG
Sbjct: 1 MKISTKGRYGLEAIVDLAIHSSEGRVSLKSIAERCGMSEAYILQIFLILRRAGIVESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKAL 115
+GG L R QIT+ +++ E C A K C +C S K +
Sbjct: 61 AQGGYVLARDPSQITVGEILTVLEGPLAPVPCIAEKTKRSKSSCERYENCTARSFWEKIM 120
Query: 116 NAFFDVLTQYSIECLVR 132
N DV ++E LV+
Sbjct: 121 NTLNDVANSITVEDLVK 137
>gi|124385754|ref|YP_001028829.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
gi|126450911|ref|YP_001081260.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
gi|254357765|ref|ZP_04974038.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
gi|124293774|gb|ABN03043.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
gi|126243781|gb|ABO06874.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
gi|148026892|gb|EDK84913.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
Length = 162
Score = 120 bits (300), Expect = 9e-26, Method: Composition-based stats.
Identities = 55/131 (41%), Positives = 78/131 (59%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY +RVLMYCA + D I+++AE +S+ L KI+ L + G +ET RGR
Sbjct: 1 MRLSEYTDYTLRVLMYCASNPDRLITIAELAERHDVSKNHLTKIVNSLARQGTLETTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL P ++I I DV++A+E F + ECF + C L C L +L AL A+F
Sbjct: 61 GGGVRLALPPERIGIGDVIRASETDFRLVECFDRNTNTCMLAAKCRLERLLDSALRAYFK 120
Query: 121 VLTQYSIECLV 131
L ++ LV
Sbjct: 121 ELDGATLTDLV 131
>gi|139438731|ref|ZP_01772215.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC
25986]
gi|133775811|gb|EBA39631.1| Hypothetical protein COLAER_01217 [Collinsella aerofaciens ATCC
25986]
Length = 189
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY +R+L A + + AE + F I LV+AGIVE++RG
Sbjct: 29 MDISRKTDYALRMLAMLAEDPECLLSVRTAAEEVNVPYSFARSIQHGLVQAGIVESLRGV 88
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL D +TI VV+A + + +C A DC +G+C + A D
Sbjct: 89 HGGMRLKVSPDDVTIRQVVEAVQGPMVMNDCTAPDG-DCARMGACCYHPLWAGAQALMRD 147
Query: 121 VLTQYSIECLVRNRS 135
L S+ +V +R
Sbjct: 148 YLDSVSLGDIVAHRQ 162
>gi|295111229|emb|CBL27979.1| transcriptional regulator, BadM/Rrf2 family [Synergistetes
bacterium SGP1]
Length = 161
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ T YG+R L D P +S IA I +L ++ L ++ I+++VRG
Sbjct: 1 MKLSTTTRYGLRALTDLCVQQQDAPVSVSDIARRQSIPVNYLEQLFAKLRRSNILKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RPA +IT+ +V+ A E C + C +C + + +
Sbjct: 61 AQGGYLLARPAKEITLSEVIAALGEEILFGSCQSEKG--CANAATCSTFDLWNRLRISID 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+L ++E L + +++
Sbjct: 119 GILDGTTLEDLAKKDRTLRA 138
>gi|291295978|ref|YP_003507376.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM
1279]
gi|290470937|gb|ADD28356.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM
1279]
Length = 159
Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + + +AEA IS +L +I L +AG + +VRG
Sbjct: 1 MWVSTKAQYGLRALVEIGLRQPQAVPLKDVAEAQGISLHYLEQIAAQLRRAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RP++ I L+VV+A E S C ++ C G C ++ ++ A
Sbjct: 61 RGGYRLGRPSEHIDALEVVEALEGSLAPVICLDDPEL-CWQTGHCSTETLWKRVDEAMRG 119
Query: 121 VLTQYSIECLVRNRSSIK 138
VL +++ L+ R I+
Sbjct: 120 VLRSTTLKDLIEERRLIE 137
>gi|308188263|ref|YP_003932394.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1]
gi|308058773|gb|ADO10945.1| HTH-type transcriptional repressor nsrR [Pantoea vagans C9-1]
Length = 147
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ +S + KI+ L +AG V RG
Sbjct: 1 MQLTSFTDYGLRALIYLAALPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL P QI I DVV+ E + +C + C + +C L L A+ F
Sbjct: 61 KNGGIRLGMPPRQIVIGDVVRKM-EPLQLVDCAS-----CSITPACRLKQALHDAVQRFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + + +I
Sbjct: 115 QELDSYTLADLVEGNTPLYEII 136
>gi|281418573|ref|ZP_06249592.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|281407657|gb|EFB37916.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
Length = 147
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ +M A+++ + IAE ISE +L ++ L KA IV++++G
Sbjct: 1 MKMSTKGRYGLQAMMDIAVNSKGDIVSVKSIAERQNISESYLEQVFSILRKAAIVKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L IT+ +++ E + V + + C V K +
Sbjct: 61 AQGGYVLADDPSNITVGKILRTLEGNLNVVDI-DDRDSEVSKEEKCINEFVWNKINKSID 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
V+ ++ L+R ++
Sbjct: 120 KVVDNITLGDLLREYQKLED 139
>gi|261364552|ref|ZP_05977435.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
mucosa ATCC 25996]
gi|288567120|gb|EFC88680.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
mucosa ATCC 25996]
Length = 148
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P QI I ++ A E+ +C + K +C C +
Sbjct: 61 PGGGYILAAPPAQINIAQIISAAEDKLDATQCSS--KANCYHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L+ +++ ++ ++S
Sbjct: 119 DYLSSVTLQSIIEQKNS 135
>gi|170729199|ref|YP_001763225.1| BadM/Rrf2 family transcriptional regulator [Shewanella woodyi ATCC
51908]
gi|169814546|gb|ACA89130.1| transcriptional regulator, BadM/Rrf2 family [Shewanella woodyi ATCC
51908]
Length = 152
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 55/143 (38%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L K G +ETVR
Sbjct: 1 MQLTRYTDFGIRTLMYLALQPERETLFRIAEITEVFELSPNHVSKIVHHLGKLGYLETVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL PA +I I +V+ E S +C +K C +C L VL +A++A+
Sbjct: 61 GKSGGFRLGMPASEINIGQLVRVLENSLAPIDC---NKPYCLFTPACKLRGVLAEAVSAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL ++S+E +V NR + K+
Sbjct: 118 LAVLDKHSLEDVVSNRQQLLKLL 140
>gi|311105547|ref|YP_003978400.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8]
gi|310760236|gb|ADP15685.1| rrf2 family protein 1 [Achromobacter xylosoxidans A8]
Length = 145
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+RVLMY D P I +IA+ +S L K+ + + G V T R
Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIADRFSVSRNHLVKVAHFMAQQGWVSTSR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+RL R A + D+++ E+ + +C C L GSC L+ VL + L AF
Sbjct: 61 GKGGGLRLSRSAGDYRLGDLIRQLEQQGPLIDCRE---PPCALDGSCRLSGVLAQTLQAF 117
Query: 119 FDVLTQYSIECLVRNRSS 136
++ L Y++ LVR+ ++
Sbjct: 118 YEALNGYTLADLVRDPTA 135
>gi|261367832|ref|ZP_05980715.1| iron-sulfur cluster assembly transcription factor IscR
[Subdoligranulum variabile DSM 15176]
gi|282570636|gb|EFB76171.1| iron-sulfur cluster assembly transcription factor IscR
[Subdoligranulum variabile DSM 15176]
Length = 138
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R Y +R+++ A H D + +I++ IS +L +I+ PL KAG+V +VRG
Sbjct: 1 MKFSTRDRYALRLMVELANHGDGLVPLKEISDTQQISLKYLEQIITPLAKAGLVTSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL RP ++IT ++++A E C ++CP C +
Sbjct: 61 QGGYRLARPEEEITAGEILRAVEGELTAIPCLG-ANMECPRRDQCQTIGFWCGLNDLINQ 119
Query: 121 VLTQYSIECL 130
+ ++ L
Sbjct: 120 YVDGVTLAAL 129
>gi|71908531|ref|YP_286118.1| BadM/Rrf2 family transcriptional regulator [Dechloromonas aromatica
RCB]
gi|71848152|gb|AAZ47648.1| transcriptional regulator, BadM/Rrf2 family [Dechloromonas
aromatica RCB]
Length = 159
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 54/140 (38%), Positives = 81/140 (57%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ +DY +RVLMY D I++IA A IS+ L K+ L + G +ETVRG+
Sbjct: 1 MRLSAFSDYSLRVLMYLGAQTDRLATIAEIAAAHDISKSHLMKVAYQLGRGGYIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +I + +V++ TE F +AECFA K C + G+C L ++L +AL A F
Sbjct: 61 GGGLRLAHEPQEIVVGEVIRQTESDFTLAECFAD-KSTCRIQGACCLPAILNEALKAMFL 119
Query: 121 VLTQYSIECLVRNRSSIKKI 140
VL Y++ L+R + +
Sbjct: 120 VLDGYTLADLLRTPGKLMPL 139
>gi|290473406|ref|YP_003466272.1| hypothetical protein XBJ1_0326 [Xenorhabdus bovienii SS-2004]
gi|289172705|emb|CBJ79476.1| conserved hypothetical protein [Xenorhabdus bovienii SS-2004]
Length = 139
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ E +S + KI+ L G+V +RG
Sbjct: 1 MQLTSFTDYGLRALIYMASLPEGQMTSITEVTEVYGVSRNHMVKIINQLSNLGLVNAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L +PA +I I DVV++ E + C A C + +C L VL +A+ F
Sbjct: 61 KNGGISLGKPASEIKIGDVVRSL-EPLSLVNCSA-----CYITPACRLKLVLNQAVENFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L ++++ +V++ + ++
Sbjct: 115 QELDKHTLADMVKDNRPLYQLL 136
>gi|56475710|ref|YP_157299.1| rf2 family transcriptional regulator [Aromatoleum aromaticum EbN1]
gi|56311753|emb|CAI06398.1| predicted transcriptional regulator,rf2 family [Aromatoleum
aromaticum EbN1]
Length = 211
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 75/143 (52%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY R L++ + IS ++E I L KI+ L + G +E +RG
Sbjct: 57 MQLTRYTDYAFRTLIFLGLQKPAELVTISIVSEHFDIPRNHLVKIVNHLARLGYIEALRG 116
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL RPA +I + VV+A EE+ C C ++ SC L ++ +A AF
Sbjct: 117 KGGGIRLNRPATKINLRTVVEAVEETLTPINCHEP---TCRILPSCRLVGIMDEAQEAFL 173
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL +YS+ L ++ ++K+
Sbjct: 174 AVLGKYSLSDLQQDPQRLEKLLR 196
>gi|50086222|ref|YP_047732.1| hypothetical protein ACIAD3227 [Acinetobacter sp. ADP1]
gi|49532198|emb|CAG69910.1| putative transcriptional regulator [Acinetobacter sp. ADP1]
Length = 145
Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 72/132 (54%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY + ++ P I+ IA +S+ L KI+ + K G + T RG+
Sbjct: 4 MQLNKFTDYALRILMYVSRPSETPYTIADIANDLRVSQNHLVKIVHFMGKQGWIITTRGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L A + + D+V++ + + EC C L CGL +L +AL F+
Sbjct: 64 GGGLKLNPKALDLKLGDIVRSLQGDHQIVECH---TPPCVLRSHCGLKGILDQALEQFYQ 120
Query: 121 VLTQYSIECLVR 132
L QY ++ ++R
Sbjct: 121 SLDQYQLKDVLR 132
>gi|295106061|emb|CBL03604.1| transcriptional regulator, BadM/Rrf2 family [Gordonibacter
pamelaeae 7-10-1-b]
Length = 136
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y +R+++ A + P + Q A +S +L ++ LVKAGI++++R
Sbjct: 1 MMISTKGRYALRLMIDIASREQDGSPVTMRQAAAREDLSVKYLEQLGGALVKAGILKSIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L +PA+ IT DV++ATE C CP C + R
Sbjct: 61 GVSGGYLLAKPAEDITAGDVLRATEGGCAPVACLEDGAEACPRRSECVAVNFWRGLDRTI 120
Query: 119 FDVLTQYSIECLVR 132
+ ++ LV+
Sbjct: 121 EGYVDGVTLADLVK 134
>gi|262045389|ref|ZP_06018413.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259037307|gb|EEW38554.1| transcriptional repressor NsrR [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 156
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V VRG+
Sbjct: 17 QLTSFTDYGLRALIYMASLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRMGYVTAVRGK 76
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA QI + DVV+ E + C + C + +C L L +A +F
Sbjct: 77 NGGIRLGKPAGQIRVGDVVRDL-EPLSLVNCSSEF---CHITPACRLKQALAEAAQSFLK 132
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y + LV + K+
Sbjct: 133 ELDNYMLADLVEKNQPLYKLL 153
>gi|218289783|ref|ZP_03493983.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius LAA1]
gi|258510985|ref|YP_003184419.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|218240074|gb|EED07259.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius LAA1]
gi|257477711|gb|ACV58030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 144
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ RT+YG+R ++ A ++ P + IAEA I E FL +I+ L +A +V +VR
Sbjct: 1 MKISSRTEYGLRAMVALARMAGHERPVPLRAIAEAEAIPEPFLDQIMAKLRRANLVTSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKAL 115
G GG L RPA++I++ ++V+ E S C D C L C SV +
Sbjct: 61 GVNGGYHLSRPAEEISVGELVRVLEGSLAPIACVDDADPDSASCDLYAGCHARSVWVRVT 120
Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
A L Q S+ ++ + ++
Sbjct: 121 KAIARALDQLSLADVMHDDVPLQ 143
>gi|242277828|ref|YP_002989957.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
salexigens DSM 2638]
gi|242120722|gb|ACS78418.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
salexigens DSM 2638]
Length = 141
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R Y R+L+ A+ +D P + + ++E+ I+ F+ +IL+PL KAG++ +VRG
Sbjct: 1 MKLSARARYATRLLLDLALRQSDTPRKTTLLSESTGITVQFIEQILRPLKKAGLIVSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + I+I ++V+ E + +C A I C +C V ++
Sbjct: 61 ATGGHILDKDPSTISIGEIVRIMEGGINLTDCVADESI-CARSATCKTRKVWVRSSKVLE 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L SI L+ N S
Sbjct: 120 EELDSISIADLMDNPDS 136
>gi|126176517|ref|YP_001052666.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS155]
gi|152998594|ref|YP_001364275.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS185]
gi|160873169|ref|YP_001552485.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS195]
gi|217971259|ref|YP_002356010.1| BadM/Rrf2 family transcriptional regulator [Shewanella baltica
OS223]
gi|304412444|ref|ZP_07394051.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS183]
gi|307305788|ref|ZP_07585534.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
BA175]
gi|125999722|gb|ABN63797.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS155]
gi|151363212|gb|ABS06212.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS185]
gi|160858691|gb|ABX47225.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS195]
gi|217496394|gb|ACK44587.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS223]
gi|304349279|gb|EFM13690.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS183]
gi|306911281|gb|EFN41707.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
BA175]
gi|315265394|gb|ADT92247.1| transcriptional regulator, BadM/Rrf2 family [Shewanella baltica
OS678]
Length = 151
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+ D RI++I + +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKMGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + +V+ E S +C + C +C L VL +A+ A+
Sbjct: 61 GKMGGFRLGKPASEINLGQLVRVLENSLAPIDCSKPY---CRFTPACKLKGVLAQAVEAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+VL QY++ +V NR + +
Sbjct: 118 LNVLDQYTLLDIVSNRDELLALL 140
>gi|254450707|ref|ZP_05064144.1| rhizobial iron transcriptional regulator protein [Octadecabacter
antarcticus 238]
gi|198265113|gb|EDY89383.1| rhizobial iron transcriptional regulator protein [Octadecabacter
antarcticus 238]
Length = 143
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL K +DY +R+L+ ++ S IA++ +S+ + K+ LV+ G V + RGR
Sbjct: 1 MHLDKFSDYAVRILIALSVSKAGRVPASSIAQSYGLSQHHIAKVATELVRGGFVTSDRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L RPA I+I V+++ VAECF S +C ++ +CGL + L +A +AFF
Sbjct: 61 GGGLQLARPATDISIGAVLRSIMADDPVAECFGS-APNCAILPACGLRTPLTQAKDAFFS 119
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
VL Y+++ + + +S++ + +A
Sbjct: 120 VLDGYTLDDVTQRKSALADLLSA 142
>gi|298505751|gb|ADI84474.1| transcriptional regulator, putative [Geobacter sulfurreducens
KN400]
Length = 137
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A I IS+IAEA + + FL KILQ K GIV++ RG
Sbjct: 2 MELTRKGEYAIRGVIYLAQIPPGTVALISEIAEATDVPQTFLAKILQSFAKIGIVKSFRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +IT+ +VV+A E C C CG+ V RK
Sbjct: 62 AGGGFILGRHPSRITLREVVEAVEGPIMPNRCLLGSG-TCERDNICGVHPVWRKVQERVA 120
Query: 120 DVLTQYSIECLVR 132
+ L ++E L
Sbjct: 121 ETLDAVTLEELAA 133
>gi|169831709|ref|YP_001717691.1| BadM/Rrf2 family transcriptional regulator [Candidatus Desulforudis
audaxviator MP104C]
gi|169638553|gb|ACA60059.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
Desulforudis audaxviator MP104C]
Length = 151
Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R YG R L+ A H + P + IA +S+ +L +++ L AG+V ++RG
Sbjct: 1 MRVSTRVRYGTRALVDIAEHHGNGPVCLRDIARRQKVSQPYLEQLILLLKAAGLVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L R +I++++V+ V +C C G+CG+ + +A
Sbjct: 61 ARGGFVLARDPAEISMIEVMTTLGWESEVVDCVGDPG-SCSRAGACGMRDFWCRLSDAVS 119
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++ L++ ++
Sbjct: 120 KVVGSTTLADLMQEQAE 136
>gi|296446526|ref|ZP_06888469.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
gi|296256022|gb|EFH03106.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
Length = 144
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/133 (32%), Positives = 68/133 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD+G+R L+ A D + IA+ +S + K+LQ L +G VE +RG
Sbjct: 1 MKLTTFTDFGLRALILLASRKDEVLSAAAIADYFSVSRHHMAKVLQELAASGYVEGIRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GGVRL + I + DVV++ ++ + +CF DC L+ C L +L A F
Sbjct: 61 QGGVRLAKDPRDIRVGDVVRSLDKEQALVDCFRDGWNDCALLPRCRLKGMLANAQQGFLR 120
Query: 121 VLTQYSIECLVRN 133
L +++I +
Sbjct: 121 ELDRFTISDCLEK 133
>gi|294677259|ref|YP_003577874.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
SB 1003]
gi|294476079|gb|ADE85467.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
SB 1003]
Length = 168
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 80/142 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ +R LM+CA++ D R +IAEAC SE L +++ L + G +ET RGR
Sbjct: 1 MRLTTRTNLAMRTLMFCAVNGDRIVRKHEIAEACNASENHLAQVVNTLAQRGFIETQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RP DQI + +V++ E EC CPL +C + AL AF+
Sbjct: 61 SGGLRLARPMDQIGVGEVLRTFEAVLPFVECLDGDNNTCPLCDACRFRDAIEAALEAFYT 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
+ ++S+ LVR+ +++ +
Sbjct: 121 AMDRHSVGDLVRDNDALEHLLR 142
>gi|49474135|ref|YP_032177.1| iron-responsive transcriptional regulator [Bartonella quintana str.
Toulouse]
gi|49239639|emb|CAF25998.1| aau3 protein [Bartonella quintana str. Toulouse]
Length = 148
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 77/140 (55%), Positives = 105/140 (75%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI IA+A ISE FLFKILQPLV+AG ++TVRGR
Sbjct: 1 MRLTKQTNYALRMLMYCADNQGSLSRIPDIAKAYAISEFFLFKILQPLVEAGFIQTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L +PA +I++ DVVK TE++F +AECF + K +CPL+ CGL + L+KALNAFFD
Sbjct: 61 NGGIKLAKPAAEISVADVVKVTEDNFSMAECFNTAKSNCPLIDFCGLNTALQKALNAFFD 120
Query: 121 VLTQYSIECLVRN--RSSIK 138
VL+ S+ L R R+ +K
Sbjct: 121 VLSMISLADLQRRSFRNQLK 140
>gi|325123611|gb|ADY83134.1| hypothetical protein BDGL_002548 [Acinetobacter calcoaceticus
PHEA-2]
Length = 147
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL--VKAGIVETVR 58
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+R
Sbjct: 1 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKHKQEWIITIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+RL A + +V+ + + EC + C L CGL +L +AL +F
Sbjct: 61 GKGGGIRLNPEALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESF 117
Query: 119 FDVLTQYSIECLVRNRSS 136
+ L QY++ +++ S
Sbjct: 118 YQSLDQYTLGEVLQQSKS 135
>gi|304437228|ref|ZP_07397188.1| iron-sulfur cluster assembly transcription regulator IscR
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304369720|gb|EFM23385.1| iron-sulfur cluster assembly transcription regulator IscR
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 147
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + + IA ISE +L +++ PL +AG+VE+VRG
Sbjct: 1 MKLSTKGRYSVTALYELALRYGKGVIPLHAIAATQGISEHYLEQLMVPLRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----ASHKIDCPLVGSCGLTSVLRKAL 115
+GG L P ++ITI ++ A E + +C + C G+C + +
Sbjct: 61 AQGGYTLALPPEKITIGRIITAVEGPIALVDCLLTDAEARDQSCERAGNCVTRQIWEEVC 120
Query: 116 NAFFDVLTQYSIECLVRN 133
++ VL ++ LV+
Sbjct: 121 DSINSVLNNIALSDLVQR 138
>gi|167621980|ref|YP_001672274.1| BadM/Rrf2 family transcriptional regulator [Shewanella halifaxensis
HAW-EB4]
gi|167352002|gb|ABZ74615.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
halifaxensis HAW-EB4]
Length = 149
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDYG+R LMY A++++ RIS+I E +S + K++ L K G ++TVR
Sbjct: 1 MQLTRYTDYGLRTLMYLAVNSERESLFRISEITEVFDLSANHISKVVHHLGKLGYLQTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG +L +PA +I I VV+A E S +C + C +C L L A+NA+
Sbjct: 61 GKSGGFKLAKPAAEINIGQVVRALENSLAPIDCSKPY---CLFTPACKLKGALGDAVNAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL Y+++ +V N+ +K +
Sbjct: 118 LAVLDAYTLDMIVTNKQELKSLL 140
>gi|189424306|ref|YP_001951483.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacter lovleyi SZ]
gi|189420565|gb|ACD94963.1| transcriptional regulator, BadM/Rrf2 family [Geobacter lovleyi SZ]
Length = 134
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ DY IR ++Y A + S+IA A + + FL KI Q K GIV++ RG
Sbjct: 2 MELTRKGDYAIRGIIYLASQPPNKISLLSEIAVAVDVPQTFLAKIFQQFSKTGIVKSFRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P + IT+L VV+A E C +C SC + V R+
Sbjct: 62 TGGGFLLAGPPESITLLQVVEAVEGPILPNRCVLKPG-ECERDASCTVHPVWRQVQQQVR 120
Query: 120 DVLTQYSIECLV 131
+L +++ L
Sbjct: 121 SILAGITLKDLA 132
>gi|332285364|ref|YP_004417275.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
gi|330429317|gb|AEC20651.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
Length = 151
Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+LMY H D I+++A+A ISE L KI L + G +ET+RG+
Sbjct: 1 MRLTTMTDYAMRLLMYVGRHPDRLCTIAEVAQAYGISEPHLMKITHRLAQRGWLETIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P ++I + VV+ TE + ECF C L G C LT+++ AL F
Sbjct: 61 NGGMRLAHPPEEINLGAVVRDTENDLALVECFV-ANNACTLSGQCNLTAIIDGALQQFMQ 119
Query: 121 VLTQYSIECLV 131
L +Y++ ++
Sbjct: 120 HLDRYTLADII 130
>gi|261400315|ref|ZP_05986440.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
lactamica ATCC 23970]
gi|269209934|gb|EEZ76389.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
lactamica ATCC 23970]
Length = 148
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAARINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135
>gi|229816044|ref|ZP_04446365.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM
13280]
gi|229808358|gb|EEP44139.1| hypothetical protein COLINT_03097 [Collinsella intestinalis DSM
13280]
Length = 169
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY +R+L A N + AEA + F I LV+AGIVE++RG
Sbjct: 10 MDISRKTDYALRMLAMLAEGNKSLLSVRTAAEAVDVPYSFARSIQHGLVQAGIVESLRGV 69
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+RL +ITI +V+A + + +C A + CP + C + A D
Sbjct: 70 RGGMRLRLKPSEITIRQIVEAVQGPLVMNDCTAEEGM-CPRMECCCYHPIWAGAQELLRD 128
Query: 121 VLTQYSIECLVRNRS 135
L +++ +V +R
Sbjct: 129 YLDSVTLDDVVNHRQ 143
>gi|171057733|ref|YP_001790082.1| BadM/Rrf2 family transcriptional regulator [Leptothrix cholodnii
SP-6]
gi|170775178|gb|ACB33317.1| transcriptional regulator, BadM/Rrf2 family [Leptothrix cholodnii
SP-6]
Length = 177
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+ P ++ I+ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALREHTGPVALAAISARQQISLSYLEQLFGKLRRHELVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A+ IT+ D++ A +E+ C G C +
Sbjct: 61 PGGGYSLGRKAEDITVADIIVAVDEAIDSTGCGGGENCMGDDTGRCMTHDLWTSLNAKML 120
Query: 120 DVLTQYSIECLVRNR 134
+ L S+ LV+++
Sbjct: 121 EYLHSISLRSLVQDQ 135
>gi|295695737|ref|YP_003588975.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
2912]
gi|295411339|gb|ADG05831.1| transcriptional regulator, BadM/Rrf2 family [Bacillus tusciae DSM
2912]
Length = 136
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YGI +++ AI+ D P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKLSTRGRYGITLMVDLAINSGDQPVSLKSIAERQNLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +PA +IT D+V+ E V E GL + + +A
Sbjct: 61 AYGGYVLAKPAQEITAGDIVRVLEGPITVVE-----------DEPTGLRRLWDEVRDAIN 109
Query: 120 DVLTQYSIECLVR 132
VL + ++ L
Sbjct: 110 AVLDRTTLADLAE 122
>gi|210611516|ref|ZP_03288936.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787]
gi|319936514|ref|ZP_08010929.1| cysteine desulfurase [Coprobacillus sp. 29_1]
gi|210151963|gb|EEA82970.1| hypothetical protein CLONEX_01126 [Clostridium nexile DSM 1787]
gi|319808406|gb|EFW04961.1| cysteine desulfurase [Coprobacillus sp. 29_1]
Length = 135
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +RVL+ A + + +IA+ ISE +L +I++ LV G++ + G+
Sbjct: 2 ISTKGRYALRVLIDLAEQDTTTYVPLKEIAKRQGISEKYLQQIVKILVGKGLLTGISGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG RL ++ + ++++ E S C A C C + +K N D
Sbjct: 62 GGYRLTASPEEYNVGEILELMEGSLTPVACLAPDTKTCSRSSHCKTLPMWKKFDNLVHDY 121
Query: 122 LTQYSIECLVR 132
+I LV
Sbjct: 122 FFHITIADLVN 132
>gi|300692019|ref|YP_003753014.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
transcription factor [Ralstonia solanacearum PSI07]
gi|299079079|emb|CBJ51741.1| DNA-binding transcriptional repressor; iron-sulfur cluster assembly
transcription factor [Ralstonia solanacearum PSI07]
Length = 191
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 2/138 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T + + + ++ A+ + P ++ I++ IS +L ++ L + IVE+VRG
Sbjct: 1 MTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQKISLSYLEQLFGKLRRHEIVESVRGPG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFD 120
GG L R AD +T+ D++ A +E +C G C + +
Sbjct: 61 GGYSLARRADDVTVADIIIAVDEPLDATQCGGKGNCGGEEHSGRCMTHDLWATLNQKMVE 120
Query: 121 VLTQYSIECLVRNRSSIK 138
L S++ LV + +
Sbjct: 121 YLDSVSLQNLVDQQRERQ 138
>gi|90414467|ref|ZP_01222443.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK]
gi|161936286|ref|YP_131442.2| transcriptional repressor NsrR [Photobacterium profundum SS9]
gi|119372260|sp|Q6LM38|NSRR_PHOPR RecName: Full=HTH-type transcriptional repressor nsrR
gi|90324472|gb|EAS41031.1| hypothetical protein P3TCK_13029 [Photobacterium profundum 3TCK]
Length = 144
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 77/143 (53%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V+TVRG
Sbjct: 1 MQLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL PA++I + DVV+AT E + C C + +C L +L A +AF
Sbjct: 61 KNGGIRLGMPANRIILGDVVRAT-EPLQIVNCSEDF---CHITPACQLKGILASARSAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L ++++ L+ N + + +
Sbjct: 117 AELDKHTLLSLIDNNPPLLVLLD 139
>gi|289803176|ref|ZP_06533805.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
Length = 155
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|326385353|ref|ZP_08206998.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326210159|gb|EGD60931.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 141
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/131 (39%), Positives = 78/131 (59%), Gaps = 5/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +DY +RV++Y H D I++IA A IS+ L K++ L G V+ +RGR
Sbjct: 1 MRLTRFSDYAVRVIIYLGAHTDRLCSIAEIARAYDISQNHLMKVVSDLAAHGYVQALRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA +I I +++ TE + + C DC L G+C L L +ALNAFF
Sbjct: 61 NGGIRLGRPAGEINIGKLIRHTEGTIDLVGC-----EDCKLAGACDLPDPLNEALNAFFA 115
Query: 121 VLTQYSIECLV 131
VL +Y++ ++
Sbjct: 116 VLERYTLADVL 126
>gi|298530491|ref|ZP_07017893.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509865|gb|EFI33769.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
thiodismutans ASO3-1]
Length = 143
Score = 118 bits (297), Expect = 2e-25, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ YG R+++ A HN+ P RI IA+ ISE +L KI++ L KAG+V+ +RG
Sbjct: 1 MKLSTTIRYGTRLMLDMAEHNETGPIRIKTIAQRQGISEKYLEKIVRLLRKAGLVDGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P ++IT+ +++A + + C C C V A
Sbjct: 61 PGGGYVLAVPPEKITMGAILEAVQGRIELCPCLGEP-EHCEKHMYCKTRMVWNDINAAVS 119
Query: 120 DVLTQYSIECL 130
L ++ L
Sbjct: 120 SRLHSITLADL 130
>gi|24371645|ref|NP_715687.1| Rrf2 family protein [Shewanella oneidensis MR-1]
gi|24345407|gb|AAN53132.1|AE015456_2 Rrf2 family protein [Shewanella oneidensis MR-1]
Length = 151
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+ D RIS+I E +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRISEITEVFDLSPNHVSKIVHHLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + ++++ E S +C + C +C L VL +A+ A+
Sbjct: 61 GKMGGFRLGKPAGEINLGQLIRSLENSLAPIDCSKPY---CRFTPACQLKGVLAQAVEAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+VL QYS+ +V NR+ + +
Sbjct: 118 LNVLDQYSLLDIVSNRNELLALL 140
>gi|154243891|ref|YP_001409464.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
autotrophicus Py2]
gi|154163013|gb|ABS70228.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
autotrophicus Py2]
Length = 145
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 67/129 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD+G+R LM+ A + +IA+A IS L K+++ L AG+V T RG
Sbjct: 1 MRLTSFTDFGLRALMWLAGDPERVFTTDEIAQAFGISRNHLTKVIRELAAAGVVTTQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R AD IT+ ++V+ E + ECF + C L C L L+ A AF
Sbjct: 61 GGGFRLARSADDITLGEIVRLLEARSALVECFRADGGACALTPGCRLKGKLKAAREAFLC 120
Query: 121 VLTQYSIEC 129
L + ++
Sbjct: 121 ELDRTTLAE 129
>gi|300087504|ref|YP_003758026.1| BadM/Rrf2 family transcriptional regulator [Dehalogenimonas
lykanthroporepellens BL-DC-9]
gi|299527237|gb|ADJ25705.1| transcriptional regulator, BadM/Rrf2 family [Dehalogenimonas
lykanthroporepellens BL-DC-9]
Length = 147
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG R L+ A + D I IA IS +L ++ PLV A ++++VRG
Sbjct: 1 MKLSTRARYGTRALLDLAQNYGDQVIPIKDIARRQQISLSYLEHLIGPLVDARLIQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG++L + + I + +VV E EC + + C C + A
Sbjct: 61 AKGGLKLAKSPEAIKLSEVVSLLEGPIEPVECIHNPEK-CDRSLFCATRDIWDDMGRAIT 119
Query: 120 DVLTQYSIECLVRNRSS 136
+VL Q ++ LV + +
Sbjct: 120 EVLGQTTLADLVSRQQA 136
>gi|170767352|ref|ZP_02901805.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
albertii TW07627]
gi|170123686|gb|EDS92617.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
albertii TW07627]
Length = 162
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|319763901|ref|YP_004127838.1| transcriptional regulator, rrf2 family [Alicycliphilus
denitrificans BC]
gi|330823835|ref|YP_004387138.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
denitrificans K601]
gi|317118462|gb|ADV00951.1| transcriptional regulator, Rrf2 family [Alicycliphilus
denitrificans BC]
gi|329309207|gb|AEB83622.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
denitrificans K601]
Length = 163
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R
Sbjct: 1 MRLTQWTDYALRVLMYCAASQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL +PA +I + +V+ TE F + ECF + C + C L SVL A A+
Sbjct: 61 GRGGGMRLMKPAHEINLGAIVRMTETDFDMVECFNAELNQCRMSSHCRLQSVLSNATRAY 120
Query: 119 FDVLTQYSIECLVRNRSS 136
VL S+ LV + +
Sbjct: 121 LAVLDGLSVADLVAPQPA 138
>gi|323490017|ref|ZP_08095238.1| putative HTH-type transcriptional regulator [Planococcus
donghaensis MPA1U2]
gi|323396313|gb|EGA89138.1| putative HTH-type transcriptional regulator [Planococcus
donghaensis MPA1U2]
Length = 138
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIDLAKHYGEGPLPLRKIAAQNDLSEAYLEQLVGPLRNSGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I+ DV++ E E K + + +A
Sbjct: 61 AYGGYMLTRHPKEISAGDVIRVLEGPIQPVEGIEDEKQP--------QRELWVRIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL +IE L ++
Sbjct: 113 NVLDTTTIEDLANAKND 129
>gi|160895967|ref|YP_001561549.1| BadM/Rrf2 family transcriptional regulator [Delftia acidovorans
SPH-1]
gi|160361551|gb|ABX33164.1| transcriptional regulator, BadM/Rrf2 family [Delftia acidovorans
SPH-1]
Length = 146
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+LM+ A H I++IA+A ISE L K+ L G + TVRG+
Sbjct: 1 MRLTLMTDYALRLLMHVARHPGRLCTIAEIAQAHAISEAHLMKVTHQLALRGWIVTVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
GG+RL I + DVV+ E + ECF C L C L VL AL++F
Sbjct: 61 GGGMRLAHAPADIGLGDVVRGMEPDLAIVECFTGTSPPACTLAQDCRLAGVLGGALDSFM 120
Query: 120 DVLTQYSIECLVRNRSSI 137
L +++ L+ +S+
Sbjct: 121 AHLDGFTLADLLPAPASL 138
>gi|114778698|ref|ZP_01453510.1| Iron-sulphur cluster assembly transcription factor IscR
[Mariprofundus ferrooxydans PV-1]
gi|114551060|gb|EAU53622.1| Iron-sulphur cluster assembly transcription factor IscR
[Mariprofundus ferrooxydans PV-1]
Length = 166
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ ND P ++ I+E IS +L ++ + L + G+V +VRG
Sbjct: 1 MRLTSKGRYAVSAMVDLNKQQNDGPVTLAAISERQFISLSYLEQLFRRLRENGLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I+I D+++A E C + C C + +
Sbjct: 61 PGGGYLLAKDAVDISIADIIRAVNEPVRTTMC-ENGVRGCHRGNRCDTHQLWESLGQHIY 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L S+ + + +I
Sbjct: 120 RFLDAVSLAKVCERDVFLDRI 140
>gi|114767192|ref|ZP_01446069.1| Transcriptional regulator [Pelagibaca bermudensis HTCC2601]
gi|114540662|gb|EAU43732.1| Transcriptional regulator [Roseovarius sp. HTCC2601]
Length = 188
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 78/141 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ R+LM CA++ D R ++IA+ C S ++Q L G +E RGR
Sbjct: 34 MRLTTRTNLAARILMACAVNPDRRLRTAEIADLCNCSTNHAAHVVQRLHAEGYLEAQRGR 93
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R Q++I V + E AECF + CPLVG+C L S +R+AL AF+
Sbjct: 94 AGGIRLARAVPQVSIGAVFRLFESEIPFAECFDADTNSCPLVGTCRLRSYIRRALEAFYH 153
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L +++ LVR + ++
Sbjct: 154 ELDLVTLDDLVRGNCGLTELL 174
>gi|118581140|ref|YP_902390.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus
DSM 2379]
gi|118503850|gb|ABL00333.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus
DSM 2379]
Length = 158
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT ++ YG+R L A + P +I I+ IS +L +I Q L +AGI+++ RG
Sbjct: 1 MRLTTKSRYGLRALFDIAYNCGTAPAQIQDISRRQDISPRYLEQIFQNLKRAGILKSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG L R D+ITIL+++ ATE+ + EC +C GSC +V +
Sbjct: 61 PQGGYFLARSPDKITILEILNATEQDVLLVECAGATEKKSKRTGECAQEGSCVTQTVWEE 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
A ++ + +++ L ++
Sbjct: 121 ASALLGELFSGITLQTLCERGQAM 144
>gi|254485469|ref|ZP_05098674.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101]
gi|214042338|gb|EEB82976.1| HTH-type transcriptional regulator NsrR [Roseobacter sp. GAI101]
Length = 152
Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats.
Identities = 54/137 (39%), Positives = 73/137 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT T+Y +R L AI R+ +A+ +S + KI+ L KAG +ETVRGR
Sbjct: 1 MKLTSYTNYAMRSLQLAAIKAPDLVRVDDVAKIHNLSRPHIMKIVHELGKAGYLETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R I + DVV+ TE V ECF K CPL+G C L+ +++A AF
Sbjct: 61 GGGFRLARDPADIIVGDVVRITEGPLDVVECFNPEKNTCPLIGICILSRKMQEATAAFMA 120
Query: 121 VLTQYSIECLVRNRSSI 137
VL +I + NR +
Sbjct: 121 VLDDLTIADITANRGQL 137
>gi|88706864|ref|ZP_01104564.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71]
gi|88698914|gb|EAQ96033.1| transcriptional regulator (UPF0074) [Congregibacter litoralis KT71]
Length = 147
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/141 (37%), Positives = 80/141 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT ++Y +R+LMYCA+H RI +A A IS+ L K + L + G + TVRGR
Sbjct: 1 MRLTAYSNYSMRILMYCAMHPGQLVRIQDVATAFDISKAHLLKAARHLGQLGYLSTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L A++I I V++A E+S ECF S CP+ G+C LT + R+ L AF+
Sbjct: 61 SGGIQLGMAAERIDIGAVIRAVEDSGEFVECFNSSTNSCPIAGTCKLTGLFRRGLEAFYQ 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L ++ LV + ++
Sbjct: 121 ELDGVTLADLVGTGTELRSRL 141
>gi|302340142|ref|YP_003805348.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Spirochaeta smaragdinae DSM 11293]
gi|301637327|gb|ADK82754.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
smaragdinae DSM 11293]
Length = 138
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + Y IR ++ A + P I +A IS FL +I L K+GI+ + RG
Sbjct: 1 MRITTKGRYAIRAVLRLAQAEEHRPIPIRILAAQEGISPEFLEQIFFRLRKSGIINSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + A+ +T++++ A EE FF++ C + C C + +
Sbjct: 61 PGGGFRLMKEANDLTLMEIFDAVEEGFFLSPCTQDGEQ-CDREERCLVHGLWEHTYEMLQ 119
Query: 120 DVLTQYSIECLVRNR 134
+I ++ NR
Sbjct: 120 SYFGAITIADVMANR 134
>gi|291458397|ref|ZP_06597787.1| iron-sulfur cluster assembly transcription factor IscR
[Oribacterium sp. oral taxon 078 str. F0262]
gi|291418930|gb|EFE92649.1| iron-sulfur cluster assembly transcription factor IscR
[Oribacterium sp. oral taxon 078 str. F0262]
Length = 134
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + L+ A ++D P I +I+E IS +L +I+ +VK G + +VR
Sbjct: 1 MMISTKGRYALTTLIDIAENSDGRTPVSIKEISERRGISLKYLEQIIALMVKGGFLRSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG RPA +I + D++ A E + EC K C +C + R+ A
Sbjct: 61 GARGGYLFTRPASEIAVGDILNAAEGTLAPVECLMDGK-SCEKSATCPTFPLYREIDEAI 119
Query: 119 FDVLTQYSIECLVRN 133
+ V+ +Y + L++
Sbjct: 120 YSVVNRYHLSDLLKK 134
>gi|251798334|ref|YP_003013065.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247545960|gb|ACT02979.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 139
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAGKFGEGPISLKSIAERNQLSEHYLEQLVAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + IT DV++ E + + + ++
Sbjct: 61 AYGGYILSKEPETITAGDVIRILEGPISPVDFTEEDDPAK--------RDLWLRIRDSIA 112
Query: 120 DVLTQYSIECLVRNRSS 136
VL Q ++ LV + +
Sbjct: 113 SVLDQTTLADLVNYQDA 129
>gi|120610257|ref|YP_969935.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
AAC00-1]
gi|120588721|gb|ABM32161.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
AAC00-1]
Length = 167
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 55/138 (39%), Positives = 75/138 (54%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDY +RVLMYCA P I+++A IS L KI+Q L G+++T R
Sbjct: 1 MRLTQWTDYALRVLMYCAACEGRAQPVTITEVAGQHGISRSHLMKIVQALAAQGLLDTTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL PA I + DVV+ TE F + ECF C L G C L L +A ++
Sbjct: 61 GRGGGLRLRVPAASIRLGDVVRLTESDFDMVECFDPAVNQCRLTGHCLLRGALAQATQSY 120
Query: 119 FDVLTQYSIECLVRNRSS 136
VL ++ LV ++
Sbjct: 121 LAVLDGVTLADLVARPAA 138
>gi|295097923|emb|CBK87013.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 163
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|320662819|gb|EFX30151.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7
str. USDA 5905]
Length = 162
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R N
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSNRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|294637705|ref|ZP_06715982.1| iron-sulfur cluster assembly transcription factor IscR
[Edwardsiella tarda ATCC 23685]
gi|291089135|gb|EFE21696.1| iron-sulfur cluster assembly transcription factor IscR
[Edwardsiella tarda ATCC 23685]
Length = 177
Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 13 MRLTSKGRYAVTAMLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 72
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A +ES C C ++ R
Sbjct: 73 PGGGYLLGKDAADIAVGAVITAVDESVDATRCQGKGGC--QGGTRCLTHALWRDLSERIS 130
Query: 120 DVLTQYSIECLVRNRSSI 137
L S+ LV N+ +
Sbjct: 131 GFLNNISLAELVNNQEVL 148
>gi|89100970|ref|ZP_01173815.1| YrzC [Bacillus sp. NRRL B-14911]
gi|89084306|gb|EAR63462.1| YrzC [Bacillus sp. NRRL B-14911]
Length = 139
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V ++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPISLKSIAQTNDLSEHYLEQLIAPLRNAGLVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLGHEPADITSGDIIRVLEGPISPVEGIEDEEPAK--------RELWMRIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL ++E L + S
Sbjct: 113 EVLDSTTLEDLANHTDS 129
>gi|15803058|ref|NP_289088.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H7 EDL933]
gi|15832651|ref|NP_311424.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H7 str. Sakai]
gi|16130456|ref|NP_417026.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. MG1655]
gi|24113860|ref|NP_708370.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a
str. 301]
gi|26248899|ref|NP_754939.1| DNA-binding transcriptional regulator IscR [Escherichia coli
CFT073]
gi|30063921|ref|NP_838092.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 2a
str. 2457T]
gi|82544980|ref|YP_408927.1| DNA-binding transcriptional regulator IscR [Shigella boydii Sb227]
gi|82777914|ref|YP_404263.1| DNA-binding transcriptional regulator IscR [Shigella dysenteriae
Sd197]
gi|89109337|ref|AP_003117.1| DNA-binding transcriptional activator [Escherichia coli str. K-12
substr. W3110]
gi|91211858|ref|YP_541844.1| DNA-binding transcriptional regulator IscR [Escherichia coli UTI89]
gi|110642696|ref|YP_670426.1| DNA-binding transcriptional regulator IscR [Escherichia coli 536]
gi|110806462|ref|YP_689982.1| DNA-binding transcriptional regulator IscR [Shigella flexneri 5
str. 8401]
gi|117624759|ref|YP_853672.1| DNA-binding transcriptional regulator IscR [Escherichia coli APEC
O1]
gi|157158615|ref|YP_001463854.1| DNA-binding transcriptional regulator IscR [Escherichia coli
E24377A]
gi|168748404|ref|ZP_02773426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4113]
gi|168761147|ref|ZP_02786154.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4501]
gi|168768629|ref|ZP_02793636.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4486]
gi|168773549|ref|ZP_02798556.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4196]
gi|168778503|ref|ZP_02803510.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4076]
gi|168787883|ref|ZP_02812890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC869]
gi|168798908|ref|ZP_02823915.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC508]
gi|170082141|ref|YP_001731461.1| Fe-S cluster-containing transcription factor [Escherichia coli str.
K-12 substr. DH10B]
gi|170684046|ref|YP_001744720.1| DNA-binding transcriptional regulator IscR [Escherichia coli
SMS-3-5]
gi|187732827|ref|YP_001881322.1| DNA-binding transcriptional regulator IscR [Shigella boydii CDC
3083-94]
gi|188493127|ref|ZP_03000397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 53638]
gi|191172663|ref|ZP_03034202.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli F11]
gi|193064097|ref|ZP_03045182.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli E22]
gi|194427320|ref|ZP_03059870.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B171]
gi|194432170|ref|ZP_03064459.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
dysenteriae 1012]
gi|194437555|ref|ZP_03069651.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 101-1]
gi|195936677|ref|ZP_03082059.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H7 str. EC4024]
gi|208809238|ref|ZP_03251575.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4206]
gi|208812791|ref|ZP_03254120.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4045]
gi|208820582|ref|ZP_03260902.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4042]
gi|209399149|ref|YP_002272006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4115]
gi|215487881|ref|YP_002330312.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O127:H6 str. E2348/69]
gi|217326708|ref|ZP_03442791.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. TW14588]
gi|218548032|ref|YP_002381823.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii
ATCC 35469]
gi|218559457|ref|YP_002392370.1| DNA-binding transcriptional regulator IscR [Escherichia coli S88]
gi|218690651|ref|YP_002398863.1| DNA-binding transcriptional regulator IscR [Escherichia coli ED1a]
gi|218696158|ref|YP_002403825.1| DNA-binding transcriptional regulator IscR [Escherichia coli 55989]
gi|218701041|ref|YP_002408670.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI39]
gi|218706034|ref|YP_002413553.1| DNA-binding transcriptional regulator IscR [Escherichia coli
UMN026]
gi|227887567|ref|ZP_04005372.1| transcription regulator [Escherichia coli 83972]
gi|237705042|ref|ZP_04535523.1| iscRSUA operon transcriptional regulator [Escherichia sp.
3_2_53FAA]
gi|238901696|ref|YP_002927492.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
gi|253772573|ref|YP_003035404.1| DNA-binding transcriptional regulator IscR [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|254162505|ref|YP_003045613.1| DNA-binding transcriptional regulator IscR [Escherichia coli B str.
REL606]
gi|254794481|ref|YP_003079318.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H7 str. TW14359]
gi|256021784|ref|ZP_05435649.1| DNA-binding transcriptional regulator IscR [Escherichia sp.
4_1_40B]
gi|260845161|ref|YP_003222939.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O103:H2 str. 12009]
gi|261223033|ref|ZP_05937314.1| Fe-S cluster-containing transcription factor [Escherichia coli
O157:H7 str. FRIK2000]
gi|261259416|ref|ZP_05951949.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O157:H7 str. FRIK966]
gi|291283756|ref|YP_003500574.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str.
CB9615]
gi|293405972|ref|ZP_06649964.1| DNA-binding transcriptional regulator IscR [Escherichia coli
FVEC1412]
gi|293410946|ref|ZP_06654522.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B354]
gi|293415799|ref|ZP_06658442.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B185]
gi|293446885|ref|ZP_06663307.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B088]
gi|297518205|ref|ZP_06936591.1| DNA-binding transcriptional regulator IscR [Escherichia coli OP50]
gi|298381773|ref|ZP_06991372.1| DNA-binding transcriptional regulator IscR [Escherichia coli
FVEC1302]
gi|300898361|ref|ZP_07116707.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 198-1]
gi|300904292|ref|ZP_07122150.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 84-1]
gi|300920690|ref|ZP_07137098.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 115-1]
gi|300927102|ref|ZP_07142852.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 182-1]
gi|300930175|ref|ZP_07145593.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 187-1]
gi|300940215|ref|ZP_07154815.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 21-1]
gi|300951758|ref|ZP_07165577.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 116-1]
gi|300958835|ref|ZP_07170946.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 175-1]
gi|300982031|ref|ZP_07175853.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 45-1]
gi|300998260|ref|ZP_07181948.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 200-1]
gi|301022140|ref|ZP_07186063.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 196-1]
gi|301024813|ref|ZP_07188450.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 69-1]
gi|301047168|ref|ZP_07194261.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 185-1]
gi|301302889|ref|ZP_07209017.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 124-1]
gi|301330373|ref|ZP_07223018.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 78-1]
gi|301648289|ref|ZP_07248030.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 146-1]
gi|306814399|ref|ZP_07448561.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101]
gi|307139166|ref|ZP_07498522.1| DNA-binding transcriptional regulator IscR [Escherichia coli H736]
gi|307313898|ref|ZP_07593514.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
gi|309784715|ref|ZP_07679348.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
dysenteriae 1617]
gi|312965449|ref|ZP_07779681.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 2362-75]
gi|331643152|ref|ZP_08344287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli H736]
gi|331648229|ref|ZP_08349319.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli M605]
gi|331653965|ref|ZP_08354966.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli M718]
gi|331658679|ref|ZP_08359623.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA206]
gi|331664096|ref|ZP_08365006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA143]
gi|331684181|ref|ZP_08384777.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli H299]
gi|84027939|sp|P0AGL0|ISCR_ECO57 RecName: Full=HTH-type transcriptional regulator iscR
gi|84027940|sp|P0AGK9|ISCR_ECOL6 RecName: Full=HTH-type transcriptional regulator iscR
gi|84027941|sp|P0AGK8|ISCR_ECOLI RecName: Full=HTH-type transcriptional regulator iscR
gi|84027942|sp|P0AGL1|ISCR_SHIFL RecName: Full=HTH-type transcriptional regulator iscR
gi|119371148|sp|Q0TEV4|ISCR_ECOL5 RecName: Full=HTH-type transcriptional regulator iscR
gi|119371149|sp|Q1R8K1|ISCR_ECOUT RecName: Full=HTH-type transcriptional regulator iscR
gi|119371150|sp|Q31XV9|ISCR_SHIBS RecName: Full=HTH-type transcriptional regulator iscR
gi|119371151|sp|Q32D33|ISCR_SHIDS RecName: Full=HTH-type transcriptional regulator iscR
gi|123342619|sp|Q0T1Y8|ISCR_SHIF8 RecName: Full=HTH-type transcriptional regulator iscR
gi|189044743|sp|A7ZPX5|ISCR_ECO24 RecName: Full=HTH-type transcriptional regulator iscR
gi|189044745|sp|A1AE68|ISCR_ECOK1 RecName: Full=HTH-type transcriptional regulator iscR
gi|226711610|sp|B7MIM1|ISCR_ECO45 RecName: Full=HTH-type transcriptional regulator iscR
gi|226711611|sp|B5Z105|ISCR_ECO5E RecName: Full=HTH-type transcriptional regulator iscR
gi|226711612|sp|B7NRI0|ISCR_ECO7I RecName: Full=HTH-type transcriptional regulator iscR
gi|226711614|sp|B1XB06|ISCR_ECODH RecName: Full=HTH-type transcriptional regulator iscR
gi|226711615|sp|B7N6B8|ISCR_ECOLU RecName: Full=HTH-type transcriptional regulator iscR
gi|226711617|sp|B1LNI7|ISCR_ECOSM RecName: Full=HTH-type transcriptional regulator iscR
gi|226711619|sp|B7LJQ3|ISCR_ESCF3 RecName: Full=HTH-type transcriptional regulator iscR
gi|226711629|sp|B2TXV6|ISCR_SHIB3 RecName: Full=HTH-type transcriptional regulator iscR
gi|254806053|sp|B7UGX7|ISCR_ECO27 RecName: Full=HTH-type transcriptional regulator iscR
gi|254806054|sp|B7LDC3|ISCR_ECO55 RecName: Full=HTH-type transcriptional regulator iscR
gi|254806055|sp|B7MYG4|ISCR_ECO81 RecName: Full=HTH-type transcriptional regulator iscR
gi|259493873|sp|C4ZXA6|ISCR_ECOBW RecName: Full=HTH-type transcriptional regulator iscR
gi|12516935|gb|AAG57645.1|AE005483_4 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|26109305|gb|AAN81507.1|AE016764_189 Hypothetical protein yfhP [Escherichia coli CFT073]
gi|1788880|gb|AAC75584.1| DNA-binding transcriptional repressor [Escherichia coli str. K-12
substr. MG1655]
gi|1799939|dbj|BAA16425.1| DNA-binding transcriptional activator [Escherichia coli str. K12
substr. W3110]
gi|13362868|dbj|BAB36820.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|24052954|gb|AAN44077.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042177|gb|AAP17902.1| hypothetical protein S2750 [Shigella flexneri 2a str. 2457T]
gi|81242062|gb|ABB62772.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|81246391|gb|ABB67099.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|91073432|gb|ABE08313.1| iscRSUA operon transcriptional regulator [Escherichia coli UTI89]
gi|110344288|gb|ABG70525.1| hypothetical protein YfhP [Escherichia coli 536]
gi|110616010|gb|ABF04677.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|115513883|gb|ABJ01958.1| DNA-binding transcriptional repressor [Escherichia coli APEC O1]
gi|157080645|gb|ABV20353.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli E24377A]
gi|169889976|gb|ACB03683.1| Fe-S cluster-containing transcription factor [Escherichia coli str.
K-12 substr. DH10B]
gi|170521764|gb|ACB19942.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli SMS-3-5]
gi|187429819|gb|ACD09093.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
boydii CDC 3083-94]
gi|187770671|gb|EDU34515.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4196]
gi|188017096|gb|EDU55218.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4113]
gi|188488326|gb|EDU63429.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 53638]
gi|189003523|gb|EDU72509.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4076]
gi|189362292|gb|EDU80711.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4486]
gi|189368435|gb|EDU86851.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4501]
gi|189372323|gb|EDU90739.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC869]
gi|189378593|gb|EDU97009.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC508]
gi|190907136|gb|EDV66736.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli F11]
gi|192929332|gb|EDV82941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli E22]
gi|194414641|gb|EDX30913.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B171]
gi|194419699|gb|EDX35779.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
dysenteriae 1012]
gi|194423361|gb|EDX39352.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 101-1]
gi|208729039|gb|EDZ78640.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4206]
gi|208734068|gb|EDZ82755.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4045]
gi|208740705|gb|EDZ88387.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4042]
gi|209160549|gb|ACI37982.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. EC4115]
gi|209763228|gb|ACI79926.1| hypothetical protein ECs3397 [Escherichia coli]
gi|209763230|gb|ACI79927.1| hypothetical protein ECs3397 [Escherichia coli]
gi|209763232|gb|ACI79928.1| hypothetical protein ECs3397 [Escherichia coli]
gi|209763234|gb|ACI79929.1| hypothetical protein ECs3397 [Escherichia coli]
gi|209763236|gb|ACI79930.1| hypothetical protein ECs3397 [Escherichia coli]
gi|215265953|emb|CAS10362.1| DNA-binding transcriptional repressor [Escherichia coli O127:H6
str. E2348/69]
gi|217319075|gb|EEC27500.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli O157:H7 str. TW14588]
gi|218352890|emb|CAU98689.1| DNA-binding transcriptional repressor [Escherichia coli 55989]
gi|218355573|emb|CAQ88185.1| DNA-binding transcriptional repressor [Escherichia fergusonii ATCC
35469]
gi|218366226|emb|CAR03973.1| DNA-binding transcriptional repressor [Escherichia coli S88]
gi|218371027|emb|CAR18854.1| DNA-binding transcriptional repressor [Escherichia coli IAI39]
gi|218428215|emb|CAR09130.2| DNA-binding transcriptional repressor [Escherichia coli ED1a]
gi|218433131|emb|CAR14027.1| DNA-binding transcriptional repressor [Escherichia coli UMN026]
gi|222034242|emb|CAP76983.1| HTH-type transcriptional regulator iscR [Escherichia coli LF82]
gi|226901408|gb|EEH87667.1| iscRSUA operon transcriptional regulator [Escherichia sp.
3_2_53FAA]
gi|227835917|gb|EEJ46383.1| transcription regulator [Escherichia coli 83972]
gi|238860965|gb|ACR62963.1| DNA-binding transcriptional repressor [Escherichia coli BW2952]
gi|242378131|emb|CAQ32904.1| IscR transcriptional dual regulator [Escherichia coli BL21(DE3)]
gi|253323617|gb|ACT28219.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253974406|gb|ACT40077.1| DNA-binding transcriptional repressor [Escherichia coli B str.
REL606]
gi|253978573|gb|ACT44243.1| DNA-binding transcriptional repressor [Escherichia coli BL21(DE3)]
gi|254593881|gb|ACT73242.1| Fe-S cluster-containing transcription factor [Escherichia coli
O157:H7 str. TW14359]
gi|257760308|dbj|BAI31805.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O103:H2 str. 12009]
gi|260448389|gb|ACX38811.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli DH1]
gi|281179585|dbj|BAI55915.1| conserved hypothetical protein [Escherichia coli SE15]
gi|281601934|gb|ADA74918.1| HTH-type transcriptional regulator iscR [Shigella flexneri 2002017]
gi|284922481|emb|CBG35568.1| transcriptional regulator [Escherichia coli 042]
gi|290763629|gb|ADD57590.1| DNA-binding transcriptional repressor [Escherichia coli O55:H7 str.
CB9615]
gi|291323715|gb|EFE63143.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B088]
gi|291428180|gb|EFF01207.1| DNA-binding transcriptional regulator IscR [Escherichia coli
FVEC1412]
gi|291433447|gb|EFF06426.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B185]
gi|291471414|gb|EFF13898.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B354]
gi|294489645|gb|ADE88401.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli IHE3034]
gi|298279215|gb|EFI20729.1| DNA-binding transcriptional regulator IscR [Escherichia coli
FVEC1302]
gi|299881341|gb|EFI89552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 196-1]
gi|300300916|gb|EFJ57301.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 185-1]
gi|300304032|gb|EFJ58552.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 200-1]
gi|300314520|gb|EFJ64304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 175-1]
gi|300357946|gb|EFJ73816.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 198-1]
gi|300396344|gb|EFJ79882.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 69-1]
gi|300403750|gb|EFJ87288.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 84-1]
gi|300408859|gb|EFJ92397.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 45-1]
gi|300412338|gb|EFJ95648.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 115-1]
gi|300416906|gb|EFK00217.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 182-1]
gi|300449042|gb|EFK12662.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 116-1]
gi|300454971|gb|EFK18464.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 21-1]
gi|300461935|gb|EFK25428.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 187-1]
gi|300841824|gb|EFK69584.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 124-1]
gi|300843633|gb|EFK71393.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 78-1]
gi|301073640|gb|EFK88446.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 146-1]
gi|305851793|gb|EFM52245.1| DNA-binding transcriptional regulator IscR [Escherichia coli NC101]
gi|306906399|gb|EFN36914.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli W]
gi|307554554|gb|ADN47329.1| iscRSUA operon transcriptional regulator [Escherichia coli ABU
83972]
gi|307625914|gb|ADN70218.1| DNA-binding transcriptional regulator IscR [Escherichia coli UM146]
gi|308927085|gb|EFP72559.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
dysenteriae 1617]
gi|309702863|emb|CBJ02194.1| transcriptional regulator [Escherichia coli ETEC H10407]
gi|312289869|gb|EFR17757.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 2362-75]
gi|312947108|gb|ADR27935.1| DNA-binding transcriptional regulator IscR [Escherichia coli O83:H1
str. NRG 857C]
gi|313651020|gb|EFS15420.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri 2a str. 2457T]
gi|315061850|gb|ADT76177.1| DNA-binding transcriptional repressor [Escherichia coli W]
gi|315137155|dbj|BAJ44314.1| DNA-binding transcriptional repressor [Escherichia coli DH1]
gi|315256552|gb|EFU36520.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 85-1]
gi|315288054|gb|EFU47456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 110-3]
gi|315292493|gb|EFU51845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 153-1]
gi|315300496|gb|EFU59725.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 16-3]
gi|315615792|gb|EFU96424.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 3431]
gi|320180526|gb|EFW55457.1| Iron-sulfur cluster regulator IscR [Shigella boydii ATCC 9905]
gi|320186422|gb|EFW61152.1| Iron-sulfur cluster regulator IscR [Shigella flexneri CDC 796-83]
gi|320188870|gb|EFW63529.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
EC1212]
gi|320196372|gb|EFW70996.1| Iron-sulfur cluster regulator IscR [Escherichia coli WV_060327]
gi|320640879|gb|EFX10367.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H7 str. G5101]
gi|320646322|gb|EFX15249.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H- str. 493-89]
gi|320651502|gb|EFX19889.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H- str. H 2687]
gi|320657213|gb|EFX25022.1| DNA-binding transcriptional regulator IscR [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320667623|gb|EFX34538.1| DNA-binding transcriptional regulator IscR [Escherichia coli
O157:H7 str. LSU-61]
gi|323159301|gb|EFZ45287.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli E128010]
gi|323170194|gb|EFZ55847.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli LT-68]
gi|323188349|gb|EFZ73641.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli RN587/1]
gi|323377569|gb|ADX49837.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli KO11]
gi|323936424|gb|EGB32714.1| iron-sulfur cluster assembly transcription protein IscR
[Escherichia coli E1520]
gi|323949191|gb|EGB45082.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli H252]
gi|323955772|gb|EGB51530.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli H263]
gi|323961347|gb|EGB56959.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli H489]
gi|323967979|gb|EGB63391.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli M863]
gi|323971055|gb|EGB66303.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli TA007]
gi|323977286|gb|EGB72372.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli TW10509]
gi|324008494|gb|EGB77713.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 57-2]
gi|324011237|gb|EGB80456.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 60-1]
gi|324113025|gb|EGC07001.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
fergusonii B253]
gi|324118259|gb|EGC12155.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli E1167]
gi|325496436|gb|EGC94295.1| DNA-binding transcriptional regulator IscR [Escherichia fergusonii
ECD227]
gi|326340335|gb|EGD64139.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
1125]
gi|326345019|gb|EGD68763.1| Iron-sulfur cluster regulator IscR [Escherichia coli O157:H7 str.
1044]
gi|327252239|gb|EGE63911.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli STEC_7v]
gi|330912307|gb|EGH40817.1| iron-sulfur cluster regulator IscR [Escherichia coli AA86]
gi|331039950|gb|EGI12170.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli H736]
gi|331043089|gb|EGI15229.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli M605]
gi|331048814|gb|EGI20890.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli M718]
gi|331054344|gb|EGI26371.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA206]
gi|331059895|gb|EGI31872.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA143]
gi|331079133|gb|EGI50335.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli H299]
gi|332087982|gb|EGI93107.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
boydii 5216-82]
gi|332089837|gb|EGI94938.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
dysenteriae 155-74]
gi|332092768|gb|EGI97837.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
boydii 3594-74]
gi|332344406|gb|AEE57740.1| iron-sulfur cluster assembly transcription factor protein IscR
[Escherichia coli UMNK88]
gi|332754063|gb|EGJ84434.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri 4343-70]
gi|332754140|gb|EGJ84509.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri K-671]
gi|332756387|gb|EGJ86738.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri 2747-71]
gi|333000511|gb|EGK20090.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri VA-6]
gi|333000908|gb|EGK20479.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri K-218]
gi|333002329|gb|EGK21893.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri K-272]
gi|333016152|gb|EGK35484.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri K-227]
gi|333016465|gb|EGK35796.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
flexneri K-304]
Length = 162
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|238784222|ref|ZP_04628235.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC
43970]
gi|238714931|gb|EEQ06930.1| HTH-type transcriptional regulator iscR [Yersinia bercovieri ATCC
43970]
Length = 164
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+H+ D P ++ I++ IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALHSHDGPVPLADISDRQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + V+ A ++S C K C C S+
Sbjct: 61 PGGGYLLGKDAAAIAVGAVIIAVDDSVDATRC--KGKEGCQDGNICLTHSLWCDLSKRIC 118
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ LV N+ ++
Sbjct: 119 GFLNDITLAELVNNKDILE 137
>gi|218290218|ref|ZP_03494372.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius LAA1]
gi|218239693|gb|EED06884.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius LAA1]
Length = 140
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/138 (38%), Positives = 79/138 (57%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+LT TDY +RVL+Y A D ++ +IA IS L K + L + G +ETVRG
Sbjct: 1 MNLTLFTDYALRVLIYTANQPDGKLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL PA I + DVV+A E+ F V CFA+ C L+ C L L +A++AF
Sbjct: 61 RGGGMRLALPARDIRVGDVVRAVEDDFAVVGCFAND--SCVLLPGCRLKRALGEAVDAFL 118
Query: 120 DVLTQYSIECLVRNRSSI 137
+ L +Y++ + + + +
Sbjct: 119 ETLNRYTLADIAASAAPV 136
>gi|255067242|ref|ZP_05319097.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256]
gi|255048610|gb|EET44074.1| transcriptional repressor NsrR [Neisseria sicca ATCC 29256]
Length = 154
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D I IAEA IS+ L K++ LVK G + ++RG+
Sbjct: 1 MYLTQHTDYGLRVLIYAAINDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL D+I + VV+ E V EC +C + SC LT +L A+ AFF
Sbjct: 61 GGGLRLADTPDKINVGAVVRHL-EPMQVVECMGE-NNECLITPSCRLTGILGGAIKAFFA 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 HLDGFTLQDLLNKPT 133
>gi|212632981|ref|YP_002309506.1| hypothetical protein swp_0072 [Shewanella piezotolerans WP3]
gi|212554465|gb|ACJ26919.1| Conserved hypothetical protein [Shewanella piezotolerans WP3]
Length = 149
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 53/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+H + RIS+I + +S + K++ L K G ++TVR
Sbjct: 1 MQLTRYTDFGLRTLMYLALHPERESLFRISEITDVFDLSANHISKVVHHLGKLGYLKTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG +L PA +I + DVV+A E S +C + C +C L VL +A+NA+
Sbjct: 61 GKSGGFKLAMPASEINVGDVVRALENSLSSIDCSKPY---CLFTPACKLKGVLAEAVNAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL Y++E +V N+ +K +
Sbjct: 118 LAVLDGYTLEMIVTNKKELKSLL 140
>gi|161502301|ref|YP_001569413.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|189044750|sp|A9MHJ3|ISCR_SALAR RecName: Full=HTH-type transcriptional regulator iscR
gi|160863648|gb|ABX20271.1| hypothetical protein SARI_00332 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 164
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|260598923|ref|YP_003211494.1| DNA-binding transcriptional regulator IscR [Cronobacter turicensis
z3032]
gi|260218100|emb|CBA32871.1| HTH-type transcriptional regulator iscR [Cronobacter turicensis
z3032]
Length = 162
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A QI + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|331673987|ref|ZP_08374750.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA280]
gi|331069260|gb|EGI40652.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA280]
Length = 162
Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|296104217|ref|YP_003614363.1| putative FeS cluster assembly transcriptional regulator IscR
[Enterobacter cloacae subsp. cloacae ATCC 13047]
gi|295058676|gb|ADF63414.1| putative FeS cluster assembly transcriptional regulator IscR
[Enterobacter cloacae subsp. cloacae ATCC 13047]
Length = 163
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|261855536|ref|YP_003262819.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Halothiobacillus neapolitanus c2]
gi|261836005|gb|ACX95772.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
neapolitanus c2]
Length = 150
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 80/134 (59%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M L ++TD+ +R LM A ++ I +I+E IS + K++ LV+ VE
Sbjct: 1 MQLNQQTDFALRALMLLAQEEKNNSPRLLTIREISEFHRISRNHMMKVINTLVEQNFVEA 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
RG+ GG++L RP+++I + DVV+A E ++ + ECF+ + +C L+ SC L + +ALN
Sbjct: 61 KRGQNGGLKLNRPSNEIRVGDVVRALENNWNLVECFSPERQNCQLLPSCQLKYLFHRALN 120
Query: 117 AFFDVLTQYSIECL 130
AFF+ L Q ++ +
Sbjct: 121 AFFEELDQCTLADI 134
>gi|146312669|ref|YP_001177743.1| DNA-binding transcriptional regulator IscR [Enterobacter sp. 638]
gi|189044747|sp|A4WDB2|ISCR_ENT38 RecName: Full=HTH-type transcriptional regulator iscR
gi|145319545|gb|ABP61692.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
Length = 163
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|237732511|ref|ZP_04562992.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2]
gi|283832088|ref|ZP_06351829.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter
youngae ATCC 29220]
gi|226908050|gb|EEH93968.1| HTH-type transcriptional regulator iscR [Citrobacter sp. 30_2]
gi|291071714|gb|EFE09823.1| iron-sulfur cluster assembly transcription factor IscR [Citrobacter
youngae ATCC 29220]
Length = 163
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|74313057|ref|YP_311476.1| DNA-binding transcriptional regulator IscR [Shigella sonnei Ss046]
gi|157162006|ref|YP_001459324.1| DNA-binding transcriptional regulator IscR [Escherichia coli HS]
gi|170019186|ref|YP_001724140.1| DNA-binding transcriptional regulator IscR [Escherichia coli ATCC
8739]
gi|191169254|ref|ZP_03031006.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B7A]
gi|193068431|ref|ZP_03049394.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli E110019]
gi|209920008|ref|YP_002294092.1| DNA-binding transcriptional regulator IscR [Escherichia coli SE11]
gi|218555056|ref|YP_002387969.1| DNA-binding transcriptional regulator IscR [Escherichia coli IAI1]
gi|256017320|ref|ZP_05431185.1| DNA-binding transcriptional regulator IscR [Shigella sp. D9]
gi|260856625|ref|YP_003230516.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O26:H11 str. 11368]
gi|260869220|ref|YP_003235622.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O111:H- str. 11128]
gi|300817699|ref|ZP_07097914.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 107-1]
gi|300820799|ref|ZP_07100949.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 119-7]
gi|309794422|ref|ZP_07688845.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 145-7]
gi|331669279|ref|ZP_08370127.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA271]
gi|331678524|ref|ZP_08379199.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli H591]
gi|332278315|ref|ZP_08390728.1| DNA-binding transcriptional repressor [Shigella sp. D9]
gi|119371152|sp|Q3YZ21|ISCR_SHISS RecName: Full=HTH-type transcriptional regulator iscR
gi|189044744|sp|A8A337|ISCR_ECOHS RecName: Full=HTH-type transcriptional regulator iscR
gi|189044746|sp|B1IWD0|ISCR_ECOLC RecName: Full=HTH-type transcriptional regulator iscR
gi|226711613|sp|B7M7N4|ISCR_ECO8A RecName: Full=HTH-type transcriptional regulator iscR
gi|226711616|sp|B6I5A3|ISCR_ECOSE RecName: Full=HTH-type transcriptional regulator iscR
gi|73856534|gb|AAZ89241.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|157067686|gb|ABV06941.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli HS]
gi|169754114|gb|ACA76813.1| transcriptional regulator, BadM/Rrf2 family [Escherichia coli ATCC
8739]
gi|190900707|gb|EDV60504.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli B7A]
gi|192958383|gb|EDV88823.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli E110019]
gi|209913267|dbj|BAG78341.1| conserved hypothetical protein [Escherichia coli SE11]
gi|218361824|emb|CAQ99422.1| DNA-binding transcriptional repressor [Escherichia coli IAI1]
gi|257755274|dbj|BAI26776.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O26:H11 str. 11368]
gi|257765576|dbj|BAI37071.1| DNA-binding transcriptional repressor IscR [Escherichia coli
O111:H- str. 11128]
gi|300526552|gb|EFK47621.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 119-7]
gi|300529687|gb|EFK50749.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 107-1]
gi|308121878|gb|EFO59140.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 145-7]
gi|320200095|gb|EFW74684.1| Iron-sulfur cluster regulator IscR [Escherichia coli EC4100B]
gi|323156187|gb|EFZ42346.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli EPECa14]
gi|323169392|gb|EFZ55068.1| iron-sulfur cluster assembly transcription factor IscR [Shigella
sonnei 53G]
gi|323177344|gb|EFZ62932.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli 1180]
gi|323941207|gb|EGB37392.1| iron-sulfur cluster assembly transcription proteinIscR [Escherichia
coli E482]
gi|323944588|gb|EGB40656.1| iron-sulfur cluster assembly transcription protein IscR
[Escherichia coli H120]
gi|324020053|gb|EGB89272.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli MS 117-3]
gi|331064473|gb|EGI36384.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli TA271]
gi|331074984|gb|EGI46304.1| iron-sulfur cluster assembly transcription factor IscR [Escherichia
coli H591]
gi|332100667|gb|EGJ04013.1| DNA-binding transcriptional repressor [Shigella sp. D9]
Length = 162
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|16761458|ref|NP_457075.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|16765864|ref|NP_461479.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|29140845|ref|NP_804187.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56412578|ref|YP_149653.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62181108|ref|YP_217525.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161612691|ref|YP_001586656.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|167549428|ref|ZP_02343187.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|167992670|ref|ZP_02573766.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|168232118|ref|ZP_02657176.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|168238283|ref|ZP_02663341.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|168243329|ref|ZP_02668261.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|168261413|ref|ZP_02683386.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|168466699|ref|ZP_02700553.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|168821475|ref|ZP_02833475.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|194444495|ref|YP_002041806.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|194448157|ref|YP_002046605.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194472929|ref|ZP_03078913.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194737710|ref|YP_002115607.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197261796|ref|ZP_03161870.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197361513|ref|YP_002141149.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|198243196|ref|YP_002216610.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|200387218|ref|ZP_03213830.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204929440|ref|ZP_03220514.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205353643|ref|YP_002227444.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207857952|ref|YP_002244603.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|213161574|ref|ZP_03347284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213416856|ref|ZP_03350000.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213425310|ref|ZP_03358060.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580754|ref|ZP_03362580.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213622388|ref|ZP_03375171.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. E98-2068]
gi|213646424|ref|ZP_03376477.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213855574|ref|ZP_03383814.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224582916|ref|YP_002636714.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|238912665|ref|ZP_04656502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|289825402|ref|ZP_06544639.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|75481667|sp|Q57LG8|ISCR_SALCH RecName: Full=HTH-type transcriptional regulator iscR
gi|81362034|sp|Q5PNG2|ISCR_SALPA RecName: Full=HTH-type transcriptional regulator iscR
gi|81416273|sp|Q7CQ10|ISCR_SALTY RecName: Full=HTH-type transcriptional regulator iscR
gi|81849081|sp|Q8XF25|ISCR_SALTI RecName: Full=HTH-type transcriptional regulator iscR
gi|189044751|sp|A9N1X3|ISCR_SALPB RecName: Full=HTH-type transcriptional regulator iscR
gi|226711622|sp|B5FR87|ISCR_SALDC RecName: Full=HTH-type transcriptional regulator iscR
gi|226711623|sp|B5R5A3|ISCR_SALEP RecName: Full=HTH-type transcriptional regulator iscR
gi|226711624|sp|B5RD13|ISCR_SALG2 RecName: Full=HTH-type transcriptional regulator iscR
gi|226711625|sp|B4TDB7|ISCR_SALHS RecName: Full=HTH-type transcriptional regulator iscR
gi|226711626|sp|B4T1C0|ISCR_SALNS RecName: Full=HTH-type transcriptional regulator iscR
gi|226711627|sp|B5BAW5|ISCR_SALPK RecName: Full=HTH-type transcriptional regulator iscR
gi|226711628|sp|B4TRX7|ISCR_SALSV RecName: Full=HTH-type transcriptional regulator iscR
gi|254806056|sp|C0PYK6|ISCR_SALPC RecName: Full=HTH-type transcriptional regulator iscR
gi|25303602|pir||AG0824 conserved hypothetical protein STY2790 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16421089|gb|AAL21438.1| hypothetical protein STM2544 [Salmonella enterica subsp. enterica
serovar Typhimurium str. LT2]
gi|16503758|emb|CAD02747.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29136470|gb|AAO68036.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56126835|gb|AAV76341.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62128741|gb|AAX66444.1| believed to be involved in assembly of Fe-S clusters [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161362055|gb|ABX65823.1| hypothetical protein SPAB_00388 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194403158|gb|ACF63380.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Newport str. SL254]
gi|194406461|gb|ACF66680.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL476]
gi|194459293|gb|EDX48132.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Kentucky str. CVM29188]
gi|194713212|gb|ACF92433.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
CVM19633]
gi|195630843|gb|EDX49435.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Newport str. SL317]
gi|197092989|emb|CAR58421.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197240051|gb|EDY22671.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA23]
gi|197288800|gb|EDY28173.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Schwarzengrund str.
SL480]
gi|197937712|gb|ACH75045.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Dublin str.
CT_02021853]
gi|199604316|gb|EDZ02861.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Virchow str. SL491]
gi|204321159|gb|EDZ06359.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Javiana str.
GA_MM04042433]
gi|205273424|emb|CAR38399.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|205325358|gb|EDZ13197.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Saintpaul str. SARA29]
gi|205329099|gb|EDZ15863.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar 4,[5],12:i:- str.
CVM23701]
gi|205333691|gb|EDZ20455.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Kentucky str. CDC 191]
gi|205337574|gb|EDZ24338.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Heidelberg str. SL486]
gi|205341984|gb|EDZ28748.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Weltevreden str.
HI_N05-537]
gi|205349628|gb|EDZ36259.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Hadar str. RI_05P066]
gi|206709755|emb|CAR34107.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|224467443|gb|ACN45273.1| hypothetical protein SPC_1107 [Salmonella enterica subsp. enterica
serovar Paratyphi C strain RKS4594]
gi|261247740|emb|CBG25568.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267994666|gb|ACY89551.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159093|emb|CBW18607.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
gi|312913533|dbj|BAJ37507.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|320087042|emb|CBY96811.1| HTH-type transcriptional regulator iscR [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321222751|gb|EFX47822.1| Iron-sulfur cluster regulator IscR [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613314|gb|EFY10256.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322620482|gb|EFY17347.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322625050|gb|EFY21879.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322629506|gb|EFY26282.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633893|gb|EFY30632.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322635499|gb|EFY32210.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639825|gb|EFY36504.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322644289|gb|EFY40833.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322652256|gb|EFY48613.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322654836|gb|EFY51153.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322658236|gb|EFY54502.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322661693|gb|EFY57911.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669673|gb|EFY65819.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673320|gb|EFY69425.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322674891|gb|EFY70978.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322682914|gb|EFY78932.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322685575|gb|EFY81570.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|322715598|gb|EFZ07169.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Choleraesuis str. A50]
gi|323130874|gb|ADX18304.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhimurium str. 4/74]
gi|323194686|gb|EFZ79876.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323200370|gb|EFZ85451.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323201270|gb|EFZ86337.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323208340|gb|EFZ93280.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|323211584|gb|EFZ96422.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323216016|gb|EGA00748.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323221911|gb|EGA06305.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225596|gb|EGA09823.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323229313|gb|EGA13437.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235372|gb|EGA19456.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323237442|gb|EGA21505.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323245197|gb|EGA29198.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323248771|gb|EGA32698.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323254049|gb|EGA37870.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323254914|gb|EGA38706.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262019|gb|EGA45584.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267803|gb|EGA51284.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269638|gb|EGA53090.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|326624365|gb|EGE30710.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Dublin str. 3246]
gi|326628745|gb|EGE35088.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9]
gi|332989471|gb|AEF08454.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
Length = 164
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|120600824|ref|YP_965398.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. W3-18-1]
gi|146291147|ref|YP_001181571.1| BadM/Rrf2 family transcriptional regulator [Shewanella putrefaciens
CN-32]
gi|120560917|gb|ABM26844.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp.
W3-18-1]
gi|145562837|gb|ABP73772.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
putrefaciens CN-32]
gi|319428504|gb|ADV56578.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
putrefaciens 200]
Length = 151
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/143 (35%), Positives = 81/143 (56%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+R LMY A+ D RI++I + +S + KI+ L K G +ET+R
Sbjct: 1 MQLTRYTDFGVRTLMYLAVQPDRTTLFRIAEITQVFDLSPNHVSKIVHHLGKLGYLETIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + +V+ E S +C + C +C L VL A++A+
Sbjct: 61 GKMGGFRLGKPACEINLGQLVRVLENSLAPIDCSKPY---CRFTPACKLKGVLAHAVDAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
+VL QYS++ +V NR + +
Sbjct: 118 LNVLDQYSLQDIVSNRDELLVLL 140
>gi|319651668|ref|ZP_08005795.1| YrzC protein [Bacillus sp. 2_A_57_CT2]
gi|317396735|gb|EFV77446.1| YrzC protein [Bacillus sp. 2_A_57_CT2]
Length = 139
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +IT D+++ E E + + + +A
Sbjct: 61 AYGGYILGKEPTKITAGDIIRVLEGPISPVEGIEDEEPAK--------RELWMRIRDAVK 112
Query: 120 DVLTQYSIECLVRN 133
DVL ++E L +
Sbjct: 113 DVLDNTTLEDLASH 126
>gi|121595468|ref|YP_987364.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
gi|120607548|gb|ABM43288.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
Length = 166
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R
Sbjct: 1 MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL +PA +I + +V+ TE F + ECF + C + C L +VL A A+
Sbjct: 61 GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120
Query: 119 FDVLTQYSIECLV 131
VL +++ LV
Sbjct: 121 LAVLDSFTVADLV 133
>gi|71066031|ref|YP_264758.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter arcticus
273-4]
gi|71039016|gb|AAZ19324.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter arcticus
273-4]
Length = 170
Score = 118 bits (295), Expect = 4e-25, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R Y + L+ A+ D +S IA+ IS +L ++ L K G+V ++
Sbjct: 1 MRLTTRGRYAVTALLDLALQTSQQDSAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L +P DQI ++ ++ A +ES +C + DC C + N
Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC--EGRGDCQGGTMCLTHDLWCALSNH 118
Query: 118 FFDVLTQYSIECLVR 132
L ++ L+
Sbjct: 119 VEQYLKNITLAQLLN 133
>gi|329119447|ref|ZP_08248132.1| iron-sulfur cluster assembly transcription regulator IscR
[Neisseria bacilliformis ATCC BAA-1200]
gi|327464380|gb|EGF10680.1| iron-sulfur cluster assembly transcription regulator IscR
[Neisseria bacilliformis ATCC BAA-1200]
Length = 167
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+H +++ I+E IS +L ++ L +AG+V+++RG
Sbjct: 21 MRLTTKGRFAVTAMLDLAMHAQKGAVKLNDISERQNISLSYLEQLFGKLRRAGLVDSIRG 80
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A I+I ++ A E+ C K +C C +
Sbjct: 81 PGGGYILAADARNISIAQIITAAEDKLDATLCSG--KTNCHNGAPCLTHDLWENLNRTIN 138
Query: 120 DVLTQYSIECLVRNRS 135
L+ ++E ++ +
Sbjct: 139 QYLSSVTLETVLSQKD 154
>gi|254498832|ref|ZP_05111541.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
gi|254351940|gb|EET10766.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
Length = 143
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +R L+Y + I++I+ A IS L KI+ L + GIV+T+RG+
Sbjct: 1 MQLTQFTDYSLRALIYIGVRQ-KICTINEISIAYSISRNHLIKIIHRLSQIGIVKTIRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + D+I + ++ E +F + CF +K C + +C L ++L +A AF
Sbjct: 60 NGGIEMAISPDKINLKQLILKLEPNFDLVPCFNQNKEPCRIASACKLQTILYEAQKAFLT 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
VL ++++ ++ N++++ ++
Sbjct: 120 VLEKFTLADIMHNQAALHQLL 140
>gi|219871543|ref|YP_002475918.1| transcriptional regulator [Haemophilus parasuis SH0165]
gi|219691747|gb|ACL32970.1| transcriptional regulator [Haemophilus parasuis SH0165]
Length = 147
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/141 (35%), Positives = 76/141 (53%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL+K TDY RVLMY A H D I Q+AE+ +S+ L K++ + K G + T RG+
Sbjct: 1 MHLSKFTDYAFRVLMYLAHHQDELRTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+R+ + + +V++ + + + +C + C L C L SVL AL F+
Sbjct: 61 GGGIRISSLILSMPVGEVIRTLQGNPRLIDCNS---PACILKPHCHLKSVLDHALEHFYQ 117
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L QYSI + ++ IK I
Sbjct: 118 YLNQYSISECIGSQKLIKGIL 138
>gi|222055544|ref|YP_002537906.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221564833|gb|ACM20805.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 153
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 68/147 (46%), Gaps = 6/147 (4%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T Y ++ L+Y + P I+ +AE I + FL IL L GI+ + +G+
Sbjct: 2 ISKKTKYALKALIYLSRTKKGEPVLIADLAEDEKIPKKFLELILLTLKNNGILHSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I++ V++ E C + +C +CG+ V++ +A
Sbjct: 62 GGYSLGKLPREISMGSVIRMLEGPLAPVPCVSETAYSKCTECEDETTCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
+L +++ ++ R+ + G
Sbjct: 122 ITQILDHTTLQDVLE-RTERAALLEKG 147
>gi|302383292|ref|YP_003819115.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Brevundimonas subvibrioides ATCC 15264]
gi|302193920|gb|ADL01492.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas
subvibrioides ATCC 15264]
Length = 159
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M L+ + Y + + A + +++IA IS +L ++ L K+G+V
Sbjct: 1 MRLSTKGRYAVMAMADLARNGQGEGAEGRAVSLAEIATRQEISLSYLEQLFARLRKSGLV 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLR 112
+VRG GG RL + A + + ++V A +E C +S + C ++
Sbjct: 61 RSVRGPGGGYRLAKTAGETVVSEIVLAVDEPIRATRCAAHSSPRGCMMAGERCITHNLWE 120
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139
+ L S+E ++ NR+ ++
Sbjct: 121 DLGDEIHRYLASVSLEDVIMNRTGPRR 147
>gi|110678148|ref|YP_681155.1| hypothetical protein RD1_0790 [Roseobacter denitrificans OCh 114]
gi|109454264|gb|ABG30469.1| conserved hypothetical protein [Roseobacter denitrificans OCh 114]
Length = 156
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 73/137 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT T++ +R L A+ + R+ + ++ + KI+ L AG V T RGR
Sbjct: 1 MKLTSYTNFALRSLQLAALKSPELIRVDDVVRVHGLARPHIVKIVHELGVAGYVVTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL +PA +I I DVV+ TE + ECF K CPL+G C L+ L+KA AF D
Sbjct: 61 NGGFRLGKPAKEIVIGDVVRLTEGPLDLVECFNPEKNTCPLIGICKLSRALQKATRAFMD 120
Query: 121 VLTQYSIECLVRNRSSI 137
VL ++ + NR +
Sbjct: 121 VLDDLTLADIAANRDDL 137
>gi|119945067|ref|YP_942747.1| transcriptional regulator, BadM/Rrf2 family protein [Psychromonas
ingrahamii 37]
gi|119863671|gb|ABM03148.1| transcriptional regulator, BadM/Rrf2 family [Psychromonas
ingrahamii 37]
Length = 158
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AI P ++ I+ IS +L ++ L K +V +VRG
Sbjct: 1 MKLTSKGRYAVTAMIDVAIKEHTGPVPLADISARQGISLSYLEQLFSKLRKKELVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + QI++ ++ A ES V +C C S+ + +
Sbjct: 61 PGGGYKLGKERHQISVAMIIDAVNESVDVRKCGGKGGCA-EDGVQCLTHSLWAQLSDRIS 119
Query: 120 DVLTQYSIECLV 131
L ++E L+
Sbjct: 120 TFLDNITLEELM 131
>gi|189220122|ref|YP_001940762.1| transcriptional regulator YrzC [Methylacidiphilum infernorum V4]
gi|189186980|gb|ACD84165.1| Putative transcriptional regulator YrzC [Methylacidiphilum
infernorum V4]
Length = 154
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTKR+ Y IR L+Y A I +IAE I + FL IL L G + + RG
Sbjct: 1 MFLTKRSKYAIRALLYLAKEQQRGTILIQEIAEKEKIPKKFLESILLELKNNGFLSSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKAL 115
+ GG L P ++I I V++ + C + DC +C + ++++
Sbjct: 61 KGGGYALEYPPEKIPIGSVIRLIDGPLAPVRCVSQTAYAPCEDCLDEKTCVIRLLMKETR 120
Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
+ VL + S++ L++ S +K
Sbjct: 121 DVISTVLDKTSLKELLQKESQLK 143
>gi|317493575|ref|ZP_07951996.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316918518|gb|EFV39856.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 141
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + D I+Q+ + +S + KI+ L +AG V VRG
Sbjct: 1 MQLTSFTDFGLRALIYMASLPADQMTNITQVTDVYGVSRNHMVKIINQLSRAGFVTAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R A I I DVV+ E + C C + +C L VL+KA AF
Sbjct: 61 KNGGIRLGRAAKDIRIGDVVREL-EPLTLVNCSHEF---CHITTACRLKQVLQKATQAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Q ++ L+ S + K+
Sbjct: 117 AELDQCTLADLIEENSPLYKLL 138
>gi|283786146|ref|YP_003366011.1| transcriptional regulator [Citrobacter rodentium ICC168]
gi|282949600|emb|CBG89219.1| transcriptional regulator [Citrobacter rodentium ICC168]
Length = 163
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|262370584|ref|ZP_06063909.1| transcriptional regulator [Acinetobacter johnsonii SH046]
gi|262314384|gb|EEY95426.1| transcriptional regulator [Acinetobacter johnsonii SH046]
Length = 149
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY + P+ I+++A+A +SE L KI+ + K + T RGR
Sbjct: 1 MQLNKFTDYALRILMYVSQPKALPHTIAELAQALQVSENHLMKIVHFMAKQQWIITARGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + + ++V+ + + EC + C L +CGL +L +AL+ F+
Sbjct: 61 GGGIRLNPETLHLRLGEIVRVLQADQNIVEC---NTPPCVLRSNCGLKGILDQALDQFYH 117
Query: 121 VLTQYSIECLV 131
L QY++ ++
Sbjct: 118 SLDQYTLADVL 128
>gi|288934077|ref|YP_003438136.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Klebsiella variicola At-22]
gi|290508273|ref|ZP_06547644.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
sp. 1_1_55]
gi|288888806|gb|ADC57124.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
At-22]
gi|289777667|gb|EFD85664.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
sp. 1_1_55]
Length = 163
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSERLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEIL 136
>gi|229543731|ref|ZP_04432791.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
36D1]
gi|229328151|gb|EEN93826.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
36D1]
Length = 139
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A P + IA++ +SE +L +++ PL AG V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKRYGMGPTSLKSIAQSQNLSEHYLEQLISPLRNAGFVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R QIT DV++ E E + + + +A
Sbjct: 61 AYGGYVLTRKPSQITAGDVIRVLEGPITPVEGIEDEEP--------VKRQLWIRIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
DVL +IE L + R
Sbjct: 113 DVLDSTTIEDLAKYRED 129
>gi|313679818|ref|YP_004057557.1| BadM/Rrf2 family transcriptional regulator [Oceanithermus profundus
DSM 14977]
gi|313152533|gb|ADR36384.1| transcriptional regulator, BadM/Rrf2 family [Oceanithermus
profundus DSM 14977]
Length = 147
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + YG+R L+ + P + ++AEA IS+ +L +I L +AG + +VRG
Sbjct: 1 MWVSTKAQYGLRALVEIGLRGPDPVPLKEVAEAQGISQHYLEQIAAALRRAGFIRSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RP ++I L+VV+ E S C C G C + R+ A +
Sbjct: 61 RGGYRLARPPEEINALEVVETMEGSLSPVGCIEDPG-SCEHEGQCSTELLWRRVDLAIRE 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL +++ L+ R I+
Sbjct: 120 VLGSTNLQHLIDERRLIEA 138
>gi|255319821|ref|ZP_05361026.1| HTH-type transcriptional regulator NsrR [Acinetobacter
radioresistens SK82]
gi|262380353|ref|ZP_06073507.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|255303140|gb|EET82352.1| HTH-type transcriptional regulator NsrR [Acinetobacter
radioresistens SK82]
gi|262297799|gb|EEY85714.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 149
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R LMY + + P I++IA IS L KI+ + K G + T+RG+
Sbjct: 1 MQLNKFTDYALRSLMYISRPRNTPYTIAEIAVDLQISHNHLVKIVHFMGKQGWLITLRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L A + D+V+ + + EC + C L CGL +L A+ F+
Sbjct: 61 GGGIQLNPQALDSRVGDIVRILQGDQPIVECNS---PPCVLRSDCGLKGILDTAVEQFYQ 117
Query: 121 VLTQYSIECLVR 132
L QY++ ++
Sbjct: 118 SLNQYTLGQVLN 129
>gi|261378411|ref|ZP_05982984.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685]
gi|269145183|gb|EEZ71601.1| transcriptional repressor NsrR [Neisseria cinerea ATCC 14685]
Length = 148
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYAAINDDMLVNIGTIAETYGISKSHLMKVVTSLVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLAAPPDCINIGAVVRHL-EPMQLVECMGP-NNECLITPSCRLTGILGGAIKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLDKPT 133
>gi|156932917|ref|YP_001436833.1| DNA-binding transcriptional regulator IscR [Cronobacter sakazakii
ATCC BAA-894]
gi|189044748|sp|A7MGX6|ISCR_ENTS8 RecName: Full=HTH-type transcriptional regulator iscR
gi|156531171|gb|ABU75997.1| hypothetical protein ESA_00720 [Cronobacter sakazakii ATCC BAA-894]
Length = 162
Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSESGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A QI + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGQIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|206579114|ref|YP_002237116.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
pneumoniae 342]
gi|226711620|sp|B5XNJ6|ISCR_KLEP3 RecName: Full=HTH-type transcriptional regulator iscR
gi|206568172|gb|ACI09948.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
pneumoniae 342]
Length = 163
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R
Sbjct: 61 PGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSERLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEIL 136
>gi|261340842|ref|ZP_05968700.1| iron-sulfur cluster assembly transcription factor IscR
[Enterobacter cancerogenus ATCC 35316]
gi|288317268|gb|EFC56206.1| iron-sulfur cluster assembly transcription factor IscR
[Enterobacter cancerogenus ATCC 35316]
Length = 163
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|241760101|ref|ZP_04758199.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
flavescens SK114]
gi|241319555|gb|EER55985.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
flavescens SK114]
Length = 148
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA+QI I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCNHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+ +++ ++ ++
Sbjct: 119 DYLSSVTLQSIIEQKN 134
>gi|256828389|ref|YP_003157117.1| BadM/Rrf2 family transcriptional regulator [Desulfomicrobium
baculatum DSM 4028]
gi|256577565|gb|ACU88701.1| transcriptional regulator, BadM/Rrf2 family [Desulfomicrobium
baculatum DSM 4028]
Length = 138
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ YG R+L+ A++ D + IA IS+ ++ K++ L + G++E+ RG
Sbjct: 1 MRLTTRSRYGTRLLLDIALNQDRGWVNTTDIARRQKISQKYIEKLITGLRRGGLIESKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNA 117
GG +L +PA IT+ DVV++ EE + +C +C L G C V +A N
Sbjct: 61 PFGGHKLAKPAMDITVGDVVRSLEEKVALTQCAEGEPICGECSLAGECVTQFVWIEASNV 120
Query: 118 FFDVLTQYSIECLVRNR 134
L Y + LV +
Sbjct: 121 LMQTLDSYRLGELVARK 137
>gi|197251434|ref|YP_002147499.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|226711621|sp|B5F1C1|ISCR_SALA4 RecName: Full=HTH-type transcriptional regulator iscR
gi|197215137|gb|ACH52534.1| iron-sulfur cluster assembly transcription factor IscR [Salmonella
enterica subsp. enterica serovar Agona str. SL483]
Length = 164
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|171910736|ref|ZP_02926206.1| RfF2 family protein [Verrucomicrobium spinosum DSM 4136]
Length = 195
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 66/137 (48%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
MHLTK+ +Y +R L+ +S +AE + F+ ILQ L AG VE+
Sbjct: 1 MHLTKKGEYALRTLIRLGIAQRQGKDVVSVSNLAEGENLPFKFIENILQELRLAGYVESK 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKA 114
RG+ GG RL +P ITI +VV+ + C + + CP CGL ++
Sbjct: 61 RGKEGGCRLAKPQVDITIGEVVRLIDGRLAPIGCASETDYERCTCPDEHHCGLRMLMIDV 120
Query: 115 LNAFFDVLTQYSIECLV 131
NA +L +Y++ +V
Sbjct: 121 RNAIAQILDRYTLADVV 137
>gi|261380293|ref|ZP_05984866.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
subflava NJ9703]
gi|284796806|gb|EFC52153.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
subflava NJ9703]
Length = 148
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA+QI I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+ +++ ++ ++
Sbjct: 119 DYLSSVTLQSIIEQKN 134
>gi|282855787|ref|ZP_06265093.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
piscolens W5455]
gi|282586419|gb|EFB91681.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
piscolens W5455]
Length = 142
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +RVL+ A H + + IAE ISE +L IL+ LV+ ++ +RG
Sbjct: 1 MLVSTKGRYALRVLIDLAEHQSGDYVPLRAIAERQQISEKYLEAILKSLVRDKVLAGMRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + +T+ +++ TE S C A C G C + R+ +
Sbjct: 61 KGGGYKLAVAPEALTVGRILRLTEPSLATVSCLAGRGEKCGRRGECRTLPMWRELDSMIL 120
Query: 120 DVLTQYSIECLVRN 133
L + L++
Sbjct: 121 AYLDGRKLADLIKK 134
>gi|157144531|ref|YP_001451850.1| DNA-binding transcriptional regulator IscR [Citrobacter koseri ATCC
BAA-895]
gi|189044742|sp|A8AD51|ISCR_CITK8 RecName: Full=HTH-type transcriptional regulator iscR
gi|157081736|gb|ABV11414.1| hypothetical protein CKO_00250 [Citrobacter koseri ATCC BAA-895]
Length = 163
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|254293805|ref|YP_003059828.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Hirschia baltica ATCC 49814]
gi|254042336|gb|ACT59131.1| transcriptional regulator, BadM/Rrf2 family [Hirschia baltica ATCC
49814]
Length = 147
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L R Y + L+ A ++ D P +S IAE IS +L ++ L KA IV++VRG
Sbjct: 1 MKLGSRGRYAVMALVDLASNDMDGPVSLSDIAERQKISLSYLEQLFAKLRKANIVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKALNAF 118
GG L A + + ++ A +E C C + C + R+
Sbjct: 61 PGGGYLLLNDASKTMVSQIIVAVDEPIQTTRCGEMGGKPCTGRLERCATHDLWRELRLHI 120
Query: 119 FDVLTQYSIECLVRNR 134
L+ SI ++
Sbjct: 121 IQFLSGVSISDVLSGN 136
>gi|210631991|ref|ZP_03297156.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279]
gi|210159793|gb|EEA90764.1| hypothetical protein COLSTE_01049 [Collinsella stercoris DSM 13279]
Length = 176
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY +R+L A D + AE+ + F I LV+AGI+E++RG
Sbjct: 16 MDISRKTDYALRMLSMLAEGEDCLLSVRTAAESVDVPYSFARSIQHGLVQAGIIESLRGV 75
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+RL +TI +V+A + + +C A CP + C + A
Sbjct: 76 RGGMRLKVDPKDVTIRQIVEAVQGPLVMNDCTAE-NGACPRMDGCCYHPLWVGAQELLRS 134
Query: 121 VLTQYSIECLVRNRS 135
L +++ +V NR
Sbjct: 135 YLDSITLDDIVNNRR 149
>gi|261365670|ref|ZP_05978553.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996]
gi|288565837|gb|EFC87397.1| transcriptional repressor NsrR [Neisseria mucosa ATCC 25996]
Length = 154
Score = 117 bits (294), Expect = 5e-25, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y A+++D I IAEA IS+ L K++ LVK G + + RG+
Sbjct: 1 MYLTQHTDYGLRVLIYAAVNDDSLVNIGTIAEAYNISKSHLMKVVTALVKGGFLTSTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL D+I + VV+ E + EC +C + SC L +L A+ AFF
Sbjct: 61 GGGLRLADTPDKINVGAVVRHL-EPMQIVECMGE-NNECLITPSCRLAGILGGAIKAFFA 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 HLDGFTLQDLLNKPT 133
>gi|257784202|ref|YP_003179419.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
20469]
gi|257472709|gb|ACV50828.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
20469]
Length = 150
Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + Y +R + A+H + + ++E IS +L +++ + KAG V+++RG+ G
Sbjct: 5 FSTKGMYALRAMADLAVH-EGWVSLGDVSERQNISRKYLEQVIALMHKAGYVDSLRGKGG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
G RL R + T+ ++++A E + A C CP + SC ++ R
Sbjct: 64 GYRLTRKPEDYTLGEILRAAEGNLAPASCLNCTNTTLCPQMESCTTINIWRDLGRMTSSF 123
Query: 122 LTQYSIECLVRNRSSIK 138
L ++ + N ++
Sbjct: 124 LDSKTLADIAHNEGNMH 140
>gi|294679131|ref|YP_003579741.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
SB 1003]
gi|294477947|gb|ADE87334.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
SB 1003]
Length = 166
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+L+Y A + I ++AE IS + K++ L + G + + +GR
Sbjct: 1 MRLTTFTDYALRLLIYTAGKPESRVTIDEVAEWFAISRAHVKKVVLTLSRGGFLLSSKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +I + +V+ ATE F + EC+ + +C + C L +V +AL AF
Sbjct: 61 NGGFTLARPPGEINLSEVILATEPDFGLFECYLTG-NECRISRPCRLPNVANEALAAFLA 119
Query: 121 VLTQYSIEC 129
VL +Y++
Sbjct: 120 VLGKYTLAD 128
>gi|222111682|ref|YP_002553946.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
gi|221731126|gb|ACM33946.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
TPSY]
Length = 166
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 56/133 (42%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDY +RVLMYCA + P IS++AEA IS L KI+Q L G+++T R
Sbjct: 1 MRLTQWTDYTLRVLMYCAACQEREQPVTISEVAEAHGISRSHLTKIVQQLAAQGLLDTTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL +PA +I + +V+ TE F + ECF + C + C L +VL A A+
Sbjct: 61 GRGGGMRLMKPASEINLGQIVRMTETDFDMVECFNAELNQCRMSSHCRLQAVLSDATRAY 120
Query: 119 FDVLTQYSIECLV 131
VL ++ LV
Sbjct: 121 LAVLDSLTVADLV 133
>gi|304396949|ref|ZP_07378829.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
gi|304355745|gb|EFM20112.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
Length = 147
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 70/142 (49%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + I+++ +S + KI+ L +AG V RG
Sbjct: 1 MQLTSFTDYGLRALIYLASLPEGQQTNITEVTNTYGLSRNHMVKIINQLSRAGYVAATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL PA QI I DVV+ E + +C + C + +C L L A+ F
Sbjct: 61 KNGGIRLGMPARQIVIGDVVRKM-EPLQLVDCAS-----CSITPACRLKQALHDAVQRFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + + +I
Sbjct: 115 QELDNYTLADLVEGNTPLYEII 136
>gi|261379265|ref|ZP_05983838.1| transcriptional repressor NsrR [Neisseria subflava NJ9703]
gi|284797696|gb|EFC53043.1| transcriptional repressor NsrR [Neisseria subflava NJ9703]
Length = 152
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + I I VV+ E V EC +C + SC LT ++ A+ AFF+
Sbjct: 61 GGGLRLADNPENINIGAVVRHL-EPMQVVECMGD-NNECLITPSCRLTGIITGAIKAFFN 118
Query: 121 VLTQYSIECLVRNRS 135
L QYS++ L+ +
Sbjct: 119 HLDQYSLQDLLDKPT 133
>gi|152976812|ref|YP_001376329.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025564|gb|ABS23334.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus
NVH 391-98]
Length = 138
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG
Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAKAHDLSEHYLEQLISPLRNARLVKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L IT DV++ E V E + + + +A
Sbjct: 61 AYGGYVLSDQPANITAGDVIRVLEGPISVVEMLEEEEP--------AQRQLWMRVRDAVQ 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL ++E LVR
Sbjct: 113 EVLDSTTLEDLVRYEEE 129
>gi|311278538|ref|YP_003940769.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
SCF1]
gi|308747733|gb|ADO47485.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
SCF1]
Length = 163
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R +
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEVL 136
>gi|306820338|ref|ZP_07453977.1| iron-sulfur cluster assembly transcription regulator IscR
[Eubacterium yurii subsp. margaretiae ATCC 43715]
gi|304551667|gb|EFM39619.1| iron-sulfur cluster assembly transcription regulator IscR
[Eubacterium yurii subsp. margaretiae ATCC 43715]
Length = 142
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y ++ + AI + + P +S I+E +SEL+L +I L K IV+++RG
Sbjct: 1 MIISTKGRYALKAVFELAIADKNTPLPLSMISEKSGLSELYLEQIFSVLKKNNIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I++ +V+K E A+C C ++ C + A
Sbjct: 61 AQGGYFLTKDTKDISVGEVIKPLEGDLSPAKCLEEDGY-CDMLDRCPTYMIWDNIKKAID 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DV+ ++ +V K+
Sbjct: 120 DVVDNTTLADMVDEYYKKHKL 140
>gi|152971394|ref|YP_001336503.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238895988|ref|YP_002920724.1| DNA-binding transcriptional regulator IscR [Klebsiella pneumoniae
NTUH-K2044]
gi|262040270|ref|ZP_06013521.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|330007731|ref|ZP_08306057.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
sp. MS 92-3]
gi|189044749|sp|A6TCF2|ISCR_KLEP7 RecName: Full=HTH-type transcriptional regulator iscR
gi|150956243|gb|ABR78273.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548306|dbj|BAH64657.1| Fe-S cluster-containing transcription factor [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259042379|gb|EEW43399.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
pneumoniae subsp. rhinoscleromatis ATCC 13884]
gi|328535344|gb|EGF61827.1| iron-sulfur cluster assembly transcription factor IscR [Klebsiella
sp. MS 92-3]
Length = 163
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSETGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A I + +V+ A +ES C C ++ R
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSERLT 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ LV N+ +
Sbjct: 119 GFLNNITLGELVNNQEIL 136
>gi|257093906|ref|YP_003167547.1| BadM/Rrf2 family transcriptional regulator [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
gi|257046430|gb|ACV35618.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
Accumulibacter phosphatis clade IIA str. UW-1]
Length = 146
Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats.
Identities = 52/142 (36%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T+ TDY +R L+Y D I +IAE +S L K++ L++AG VE +RG+
Sbjct: 1 MYITQHTDYALRALIYLGTSGDRLVTIQEIAERFGVSRNHLMKVVNALIRAGFVEGLRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R +I + VV+ E + ECF S C L C L L +AL AF
Sbjct: 61 GGGLRLARAPGEIIVGAVVRQMEPGMCLVECFGSGCQ-CILDPDCKLKVGLARALAAFLQ 119
Query: 121 VLTQYSIECLV-RNRSSIKKIF 141
VL + ++ LV ++ SI K
Sbjct: 120 VLDEMTLADLVGKSERSILKFL 141
>gi|322418655|ref|YP_004197878.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
gi|320125042|gb|ADW12602.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
Length = 136
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K G+V + RG
Sbjct: 2 MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSSRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA IT+ +VV+A E C C G C + + ++
Sbjct: 62 TGGGFVLARPASAITLREVVEAVEGPILPNRCLLGS--ACDRGGPCRVHLIWKRVQTEVV 119
Query: 120 DVLTQYSIECLVRNRS 135
D+L +I+ L RN
Sbjct: 120 DILDSVTIDTLARNSD 135
>gi|225076501|ref|ZP_03719700.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens
NRL30031/H210]
gi|224952180|gb|EEG33389.1| hypothetical protein NEIFLAOT_01547 [Neisseria flavescens
NRL30031/H210]
Length = 148
Score = 117 bits (293), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA+QI I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCNHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+ +++ ++ ++
Sbjct: 119 DYLSGVTLQSIIEQKN 134
>gi|319638128|ref|ZP_07992891.1| HTH-type transcriptional regulator [Neisseria mucosa C102]
gi|317400401|gb|EFV81059.1| HTH-type transcriptional regulator [Neisseria mucosa C102]
Length = 148
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA+QI I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAEQINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+ +++ ++ ++
Sbjct: 119 DYLSGVTLQSIIEQKN 134
>gi|89900652|ref|YP_523123.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
ferrireducens T118]
gi|89345389|gb|ABD69592.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
ferrireducens T118]
Length = 154
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 52/132 (39%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+LMY H + IS++A A ISE L KI L AG +ETVRG+
Sbjct: 1 MRLTTMSDYAMRLLMYVGQHPERLCTISEVARAYEISEAHLTKITHQLALAGWLETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL I + VV++ E F + EC S C L SC LT ++ AL +F
Sbjct: 61 GGGMRLAAAPQDIGLGAVVRSMEPDFTIVECLTSD-TTCQLTSSCHLTGIINGALQSFMQ 119
Query: 121 VLTQYSIECLVR 132
L +Y++ L+
Sbjct: 120 YLDRYTLADLLA 131
>gi|197117656|ref|YP_002138083.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
gi|197087016|gb|ACH38287.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
Length = 137
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K G+V + RG
Sbjct: 2 MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVTSSRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA QIT+ +VV+A E C C G C + V ++
Sbjct: 62 TGGGFVLARPASQITLREVVEAVEGPILPNRCLLGS--ACDRGGPCRVHGVWKQVQTEVV 119
Query: 120 DVLTQYSIECLVRNRSS 136
+L +I+ L R+
Sbjct: 120 RILDGVTIDSLARSPEQ 136
>gi|325282545|ref|YP_004255086.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
proteolyticus MRP]
gi|324314354|gb|ADY25469.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
proteolyticus MRP]
Length = 163
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M ++ + YG+R L+ + +AE +S+ +L +I L +AG ++
Sbjct: 1 MWVSTKAQYGLRALIEIGRGGGTPGEGRAVPLKDVAERQDLSQHYLEQIASNLRRAGFIK 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
+VRG GG RL RPADQI+ DVV A E S EC + + C CG + ++
Sbjct: 61 SVRGAYGGYRLARPADQISAYDVVTALEGSIAPVECVEENHV-CDGKNVCGTLDLWQRVD 119
Query: 116 NAFFDVLTQYSIECLVRNRS 135
A DVL ++ L+ +
Sbjct: 120 QALRDVLGSTTLADLIEDSR 139
>gi|237746485|ref|ZP_04576965.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
gi|229377836|gb|EEO27927.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
Length = 154
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R ++ + + + + IS +L +I L KAG++++VRG
Sbjct: 1 MKISTKGRYALRFMIDLVQYGNGNYISLKDVIARQHISPKYLEQIATALGKAGLIQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R + TI D+++ E + C + +CP +C +
Sbjct: 61 PQGGYKLSRQPESYTIGDILRPIEGNLACVACLETTPNECPQYANCTAVRFWEGLHHVVL 120
Query: 120 DVLTQYSIECLVRNR 134
+ L +++ L R
Sbjct: 121 NYLNSTNLKELADMR 135
>gi|329119509|ref|ZP_08248194.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC
BAA-1200]
gi|327464442|gb|EGF10742.1| transcriptional repressor NsrR [Neisseria bacilliformis ATCC
BAA-1200]
Length = 153
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 51/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT++TDY +RVL Y A++++ I+ IAE IS+ L K++ LVK G +++VRG+
Sbjct: 1 MYLTQQTDYALRVLAYAAVNSEELVNIATIAEVYGISKSHLMKVVTALVKGGFLDSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R A+ I + DVV+ E + EC + C L C L SVL A AF +
Sbjct: 61 GGGLRLRRQAELIRLGDVVRHM-EPMKLVECMGAGNQ-CLLTSCCLLASVLNDAGKAFLE 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 HLDKFTLADLINKPT 133
>gi|118602585|ref|YP_903800.1| BadM/Rrf2 family transcriptional regulator [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
gi|118567524|gb|ABL02329.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Ruthia
magnifica str. Cm (Calyptogena magnifica)]
Length = 139
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A ++ P + I++ IS +L ++ L +A +V++VRG
Sbjct: 1 MQLTTKGRYAVIAMLDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L I + +++A +E+ + C C C + +
Sbjct: 61 PGGGYLLDAKVSDINLTQIIEAVDENIDLRRC--KGIKGCNNGRQCISHQLWCEVSQQIR 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L +++ ++ + SS K +
Sbjct: 119 TFLNGKTLQMVIDDHSSNKGV 139
>gi|303228774|ref|ZP_07315592.1| putative HTH-type transcriptional regulator CymR [Veillonella
atypica ACS-134-V-Col7a]
gi|303230469|ref|ZP_07317228.1| putative HTH-type transcriptional regulator CymR [Veillonella
atypica ACS-049-V-Sch6]
gi|302514835|gb|EFL56818.1| putative HTH-type transcriptional regulator CymR [Veillonella
atypica ACS-049-V-Sch6]
gi|302516573|gb|EFL58497.1| putative HTH-type transcriptional regulator CymR [Veillonella
atypica ACS-134-V-Col7a]
Length = 149
Score = 116 bits (292), Expect = 7e-25, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + VL+ A P + +AE ISE +L I+ L A +V+++RG
Sbjct: 1 MRISTKGRYALMVLIDLAEQGQGKPVSLRSVAERQGISEKYLEGIVARLGAASLVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + TI++++ ATEES + ++ N
Sbjct: 61 KYGGYRLSKKPSEYTIIEILMATEESMAIISSLDEGVSTDDVINE-RTVGFWAGLQNYIH 119
Query: 120 DVLTQYSIECLVR 132
D L +++ ++
Sbjct: 120 DYLESVTLQDVID 132
>gi|330721810|gb|EGG99788.1| Nitrite-sensitive transcriptional repressor NsrR [gamma
proteobacterium IMCC2047]
Length = 142
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY RVL+Y + + + + +IAE + L K++Q L KAG + T+RG
Sbjct: 1 MQLTRHTDYAFRVLIYLSSVEEGKLSTVGEIAEIFQVPINHLTKVVQQLGKAGFIITLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + I + VV+A E + C C L +C L +L +A+ +F
Sbjct: 61 KNGGIRLAHDPESILLGSVVRAMEATLDPVNCSQPL---CRLKINCRLKPILNRAIQSFI 117
Query: 120 DVLTQYSIECLVRNRS 135
+ L +Y++ + +N+
Sbjct: 118 ETLDEYTLADISQNKE 133
>gi|205374225|ref|ZP_03227024.1| transcriptional regulator [Bacillus coahuilensis m4-4]
Length = 139
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA +SE +L +++ PL AG+V ++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKRHGEGPTSLKTIATTHELSEHYLEQLIAPLRNAGLVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT D+++ E E + + +K +A
Sbjct: 61 AYGGYVLAMEPKEITAGDIIRVLEGPISPVEGIEDEEPAK--------RELWKKIRDAVK 112
Query: 120 DVLTQYSIECLV 131
DVL +IE L
Sbjct: 113 DVLDNTTIEDLA 124
>gi|88813391|ref|ZP_01128628.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus
mobilis Nb-231]
gi|88789357|gb|EAR20487.1| iron-sulfur cluster assembly transcription factor IscR [Nitrococcus
mobilis Nb-231]
Length = 155
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A+H + P ++ I++ IS +L ++ L +A +V VRG
Sbjct: 1 MKLSTKGRYAVTAMLDLALHENRGPVILADISQGQGISLSYLEQLFARLRRARLVTGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPA IT+ DV+ A +++ + C + + +
Sbjct: 61 PGGGYRLARPAQVITVADVIVAVDDNGDALGGYEGKLN----GAHCLTHDLWSELSAQIY 116
Query: 120 DVLTQYSIECLVRN 133
D L ++ L
Sbjct: 117 DFLNGITLADLASE 130
>gi|332702697|ref|ZP_08422785.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
africanus str. Walvis Bay]
gi|332552846|gb|EGJ49890.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
africanus str. Walvis Bay]
Length = 148
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R+ YG R+++ A++ + R+S +A +S +L K+++ L KAG V + RG
Sbjct: 1 MRLSTRSRYGARMVLDMALYGNAGLVRLSDLAVRLDVSVKYLEKLVRELQKAGYVYSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I++ +VV+ E + C +I C V C + V A A F
Sbjct: 61 PTGGHGLARDVAEISVGEVVRLLEGDHALTMCAQEDQI-CRHVDDCIMRKVWTDASEAMF 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
L + LVR +
Sbjct: 120 AALDAVTFADLVREAKDKQ 138
>gi|218885726|ref|YP_002435047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756680|gb|ACL07579.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 180
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +T Y R+L+ A+H + P + +++ ++ F+ +IL+ L + G+ + RG
Sbjct: 1 MKLAAKTRYAARILLALAMHGEESPMTTTALSQHTGVTVQFIEQILKTLKRGGLTRSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ++IT+ ++V+ E + C + C SC S +A A
Sbjct: 61 ASGGHMLARTPEEITLSEIVRLMEGGIQLTVCCSGDANACARRASCLTRSAWVRASQALE 120
Query: 120 DVLTQYSIECLVRNRSSI 137
L + ++ L+ +
Sbjct: 121 HSLEETTLATLMEGDQPL 138
>gi|291288301|ref|YP_003505117.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
gi|290885461|gb|ADD69161.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
Length = 143
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +T ++ Y IR + + P ++QIAE IS +L +I L K+GIVE R
Sbjct: 1 MKITTKSRYAIRSIFALVLMGGDTKPVALTQIAEHEDISRKYLEQIFIKLKKSGIVEGSR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R I + +V+ A + +++C C SCG+ +
Sbjct: 61 GAQGGYVLARNPSDIRLKEVIYAMDGPVNISDCTQEE--SCDNFSSCGINWLWSGLKKTV 118
Query: 119 FDVLTQYSIECL 130
D L +I+ L
Sbjct: 119 DDYLDNITIQDL 130
>gi|182413876|ref|YP_001818942.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
gi|177841090|gb|ACB75342.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
PB90-1]
Length = 200
Score = 116 bits (292), Expect = 8e-25, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYC---AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+K+ +Y +R L+ A ++S++A+ + FL +I+Q L G V +V
Sbjct: 1 MKLSKKGEYALRSLINLGIAAEMGRKLVQVSELADYEQLPVKFLEQIMQALKDEGFVVSV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKA 114
RG+ GG RL +PA QI I VV+ + C + CP CGL ++
Sbjct: 61 RGKFGGYRLAKPAKQILIGQVVRLIDGPLAPIGCVSQTAYVPCTCPDETHCGLRMLMLDV 120
Query: 115 LNAFFDVLTQYSIECLVR 132
NA ++L +YS+ +V
Sbjct: 121 RNAIANILDRYSLADVVE 138
>gi|93006479|ref|YP_580916.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
cryohalolentis K5]
gi|92394157|gb|ABE75432.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
cryohalolentis K5]
Length = 170
Score = 116 bits (292), Expect = 9e-25, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R Y + L+ A+ + +S IA+ IS +L ++ L K G+V ++
Sbjct: 1 MRLTTRGRYAVTALLDLALQTSQQESAVSLSDIAKRQSISISYLEQLFSKLRKRGLVTSI 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L +P DQI ++ ++ A +ES +C + DC C + N
Sbjct: 61 RGAAGGYYLAKPLDQIDVMSIISAVDESVNAMQC--EGRGDCQGGTMCLTHDLWCALSNH 118
Query: 118 FFDVLTQYSIECLVR 132
L ++ L+
Sbjct: 119 VEQYLKNITLAQLLN 133
>gi|238018522|ref|ZP_04598948.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748]
gi|269798637|ref|YP_003312537.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Veillonella parvula DSM 2008]
gi|313894420|ref|ZP_07827985.1| putative HTH-type transcriptional regulator CymR [Veillonella sp.
oral taxon 158 str. F0412]
gi|237864993|gb|EEP66283.1| hypothetical protein VEIDISOL_00349 [Veillonella dispar ATCC 17748]
gi|269095266|gb|ACZ25257.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
DSM 2008]
gi|313441244|gb|EFR59671.1| putative HTH-type transcriptional regulator CymR [Veillonella sp.
oral taxon 158 str. F0412]
Length = 149
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + VL+ A D P + +AE ISE +L I+ L A +V+++RG
Sbjct: 1 MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + TI++++ ATEES + ++ N
Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE-RTVGFWAGLQNYIH 119
Query: 120 DVLTQYSIECLVR 132
D L +++ ++
Sbjct: 120 DYLENVTLQDVID 132
>gi|261401746|ref|ZP_05987871.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970]
gi|313667825|ref|YP_004048109.1| transcriptional regulator [Neisseria lactamica ST-640]
gi|269208119|gb|EEZ74574.1| transcriptional repressor NsrR [Neisseria lactamica ATCC 23970]
gi|309379076|emb|CBX22378.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|313005287|emb|CBN86720.1| transcriptional regulator [Neisseria lactamica 020-06]
Length = 148
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y A+++D I+ IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P ++I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLASPPERINIGAVVRHL-EPMQLVECMGP-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|319898771|ref|YP_004158864.1| hypothetical protein BARCL_0601 [Bartonella clarridgeiae 73]
gi|319402735|emb|CBI76282.1| conserved protein of unknown function [Bartonella clarridgeiae 73]
Length = 159
Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats.
Identities = 74/130 (56%), Positives = 102/130 (78%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 9 MRLTKQTNYALRMLMYCASNQGALSRIPEIAKAHAVSELFLFKILQPLVEAGFMQTVRGR 68
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA +I++ DV+K TE++F +AECF + DCPL+ CGL +VL+KAL++FFD
Sbjct: 69 NGGVKLAKPAKEISVADVIKITEDNFSMAECFDNKLSDCPLINFCGLNTVLKKALDSFFD 128
Query: 121 VLTQYSIECL 130
VL+ SI L
Sbjct: 129 VLSMTSIADL 138
>gi|95930242|ref|ZP_01312980.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
acetoxidans DSM 684]
gi|95133705|gb|EAT15366.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
acetoxidans DSM 684]
Length = 150
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y +R ++ ++ + P I +I+ IS +L ++ L + +V +VRG
Sbjct: 1 MRLSTKAQYAVRAMVRLSLEQRETPVSIREISNHENISLTYLEQLFAKLRRGELVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPADQI + ++ + EE+ C +C C +V ++
Sbjct: 61 PGGGYVLARPADQIKVDQIIDSVEETLIPVSCM-DEFGNCACSDQCVTHTVWQELGERIR 119
Query: 120 DVLTQYSIECLVRNRSS 136
L+ SIE L R
Sbjct: 120 GFLSSVSIEDLTREAQE 136
>gi|319639116|ref|ZP_07993872.1| nitric oxide-sensitive repressor [Neisseria mucosa C102]
gi|317399593|gb|EFV80258.1| nitric oxide-sensitive repressor [Neisseria mucosa C102]
Length = 152
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D I IAE IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNIGTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL ++I I VV+ E V EC +C + SC LT ++ A+ AFF+
Sbjct: 61 GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGD-NNECLITPSCRLTGIITGAIKAFFN 118
Query: 121 VLTQYSIECLVRNRS 135
L QYS++ L+ +
Sbjct: 119 HLDQYSLQDLLDKPT 133
>gi|120602252|ref|YP_966652.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
DP4]
gi|120562481|gb|ABM28225.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
DP4]
Length = 188
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +T Y R+L+ A+H + P + ++E ++ F+ +IL+ L + G+ + RG
Sbjct: 19 MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 78
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R D I++ D+V+ E + C C C S KA A
Sbjct: 79 AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 138
Query: 120 DVLTQYSIECLV-----RNRSSIKKIFNAG 144
L + S+ L+ + + + + G
Sbjct: 139 AALDETSLTALMSGEVTHDERACRSLARTG 168
>gi|222055720|ref|YP_002538082.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221565009|gb|ACM20981.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 137
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 67/137 (48%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A + IS+IA A + + FL KI Q K GI+ + RG
Sbjct: 2 MELTRKGEYAIRGIIYLAQQSPGKVSLISEIALATDVPQTFLAKIFQSFAKLGIINSSRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA IT+ VV+A E C C G C + +V R +
Sbjct: 62 TGGGFVLGRPASSITLRQVVEAVEGPIIPNRCLMDSGA-CDRGGYCNVHNVWRTVQSNVI 120
Query: 120 DVLTQYSIECLVRNRSS 136
+L +IE L + R+S
Sbjct: 121 GILDSVTIEELAKPRAS 137
>gi|311069236|ref|YP_003974159.1| transcriptional regulator of cysteine biosynthesis [Bacillus
atrophaeus 1942]
gi|310869753|gb|ADP33228.1| transcriptional regulator of cysteine biosynthesis [Bacillus
atrophaeus 1942]
Length = 138
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H D P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGDGPTSLKTIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLGSEPETITAGDIIRVLEGPISPVEVLEDEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLV 131
+VL ++E L
Sbjct: 113 EVLDNTTLEDLA 124
>gi|238022039|ref|ZP_04602465.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147]
gi|237866653|gb|EEP67695.1| hypothetical protein GCWU000324_01944 [Kingella oralis ATCC 51147]
Length = 152
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT++TDY +RVL+Y A+++ I IAE IS+ L K++ LVK G + ++RG+
Sbjct: 1 MYLTQQTDYALRVLIYAAVNDQSLVNIGTIAETYNISKSHLMKVVTALVKGGFLTSIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L +P ++I + VV+ E +AECF C + +C L+ +L L AF +
Sbjct: 61 GGGLKLAQPPEKIRVGTVVR-VTEPLQLAECFGD-NNQCLITPTCRLSQILNSGLIAFIN 118
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L Y++ LV + +I
Sbjct: 119 HLDGYTLADLVNAPT--CEILRP 139
>gi|317407279|gb|EFV87255.1| hypothetical protein HMPREF0005_05535 [Achromobacter xylosoxidans
C54]
Length = 145
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+RVLMY D P I +IA +S L K++ + + G V T R
Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDRPAAVTIPEIAARFDLSRNHLVKVVHFMSQRGWVSTAR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+ L RPA + D+V+ E+ + +C C L G+C L+ VL + L AF
Sbjct: 61 GKGGGLALARPAADYRLGDLVRELEQQGPLIDCREP---PCALDGACRLSGVLAQTLQAF 117
Query: 119 FDVLTQYSIECLVRNRSS 136
++ L YS+ LVR+ ++
Sbjct: 118 YEALNGYSLADLVRDPTA 135
>gi|114705699|ref|ZP_01438602.1| Aau3 protein [Fulvimarina pelagi HTCC2506]
gi|114538545|gb|EAU41666.1| Aau3 protein [Fulvimarina pelagi HTCC2506]
Length = 149
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 71/142 (50%), Positives = 98/142 (69%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++T+Y IR+LMY A++ D +R+ +IA+A E F+FKIL PLV AG+VETVRGR
Sbjct: 1 MRLTRQTNYAIRILMYLAVNKDRLSRLGEIAKAYSAPEPFMFKILNPLVSAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R A +I + +VV+ TEESF +AECF DCPL+ SC L + LR+AL AF
Sbjct: 61 NGGIRLAREATRINLREVVELTEESFQMAECF-ETGADCPLIFSCELNAALRQALEAFLS 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L +YS+E L +N+ + +
Sbjct: 120 TLGRYSLEDLTKNKGYLHRTLG 141
>gi|282849798|ref|ZP_06259182.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
gi|282580735|gb|EFB86134.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
Length = 149
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + VL+ A D P + +AE ISE +L I+ L A +V+++RG
Sbjct: 1 MRISTKGRYALMVLIDLAEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAAKLVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + TI++++ ATEES + ++ N
Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE-RTVGFWAGLQNYIH 119
Query: 120 DVLTQYSIECLVR 132
D L +++ ++
Sbjct: 120 DYLENVTLQDVID 132
>gi|254421032|ref|ZP_05034756.1| rrf2 family protein (putative transcriptional regulator)
[Brevundimonas sp. BAL3]
gi|196187209|gb|EDX82185.1| rrf2 family protein (putative transcriptional regulator)
[Brevundimonas sp. BAL3]
Length = 160
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND------YPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M L+ + Y + + A + +++IA IS +L ++ L K+ +V
Sbjct: 1 MRLSTKGRYAVMAMADLAKNGRGESGEIRAVSLAEIAARQEISLSYLEQLFARLRKSDLV 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLR 112
++VRG GG RL + A + + ++V A +E C S K C +
Sbjct: 61 KSVRGPGGGYRLAKGAHETVVAEIVLAVDEPIRATRCVAHGSPKGCMMAGERCITHDLWE 120
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKK 139
+ L S+E +V NR+ ++
Sbjct: 121 DLGDEIHRYLAGVSLEDVVMNRTGQRR 147
>gi|330992600|ref|ZP_08316548.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329760799|gb|EGG77295.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 137
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IRVL+Y A + + + +I+++ IS L K++ L AG+V RGR
Sbjct: 1 MRLTLHTDYAIRVLVYLARNPERRVSVHEISDSHGISHNHLVKVVNRLSHAGVVVARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG++L +I I D+V+ E V C + C L C L +L +++ AF
Sbjct: 61 SGGLQLPCLPHEIVIGDIVRLMETDMDSVVACQPENGQHCLLADICRLRHLLAQSMRAFL 120
Query: 120 DVLTQYSIECLVRNRSS 136
VL + ++ ++ +R +
Sbjct: 121 KVLDETTLNDILPDRRA 137
>gi|154246969|ref|YP_001417927.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
autotrophicus Py2]
gi|154161054|gb|ABS68270.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
autotrophicus Py2]
Length = 149
Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats.
Identities = 51/136 (37%), Positives = 79/136 (58%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ +TDY +R LM+ A+ + + + I++IA A IS+ L K+ Q L G VE VRGR
Sbjct: 1 MRLSVQTDYALRTLMFLAVKDGH-HSIAEIAHAYGISKNHLMKVAQRLAAEGFVEGVRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L RPA+ + + +++ E++ ECF + C + +CGL L AL AF
Sbjct: 60 SGGLKLARPANALNVGSIMRIMEDTGTFVECFDAATNSCVVTPACGLRHALAGALEAFAR 119
Query: 121 VLTQYSIECLVRNRSS 136
L Q++I LV + S
Sbjct: 120 HLDQFTIADLVPDSKS 135
>gi|161870639|ref|YP_001599812.1| hypothetical protein NMCC_1709 [Neisseria meningitidis 053442]
gi|161596192|gb|ABX73852.1| nitric oxide-sensitive repressor [Neisseria meningitidis 053442]
Length = 147
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLAAPPDRINIGSVVRHL-EPMQLVECMGE-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|296313550|ref|ZP_06863491.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768]
gi|296839891|gb|EFH23829.1| transcriptional repressor NsrR [Neisseria polysaccharea ATCC 43768]
Length = 148
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAGTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLAAPPDRINIGSVVRHL-EPMQLVECMGE-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|30022474|ref|NP_834105.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|30264468|ref|NP_846845.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|42783527|ref|NP_980774.1| rrf2 family protein [Bacillus cereus ATCC 10987]
gi|47529926|ref|YP_021275.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|47566586|ref|ZP_00237408.1| RRF2 family protein [Bacillus cereus G9241]
gi|49187289|ref|YP_030541.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|49478626|ref|YP_038448.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|52141107|ref|YP_085720.1| transcriptional regulator [Bacillus cereus E33L]
gi|65321765|ref|ZP_00394724.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
str. A2012]
gi|118479556|ref|YP_896707.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
str. Al Hakam]
gi|167636502|ref|ZP_02394799.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|167638649|ref|ZP_02396925.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|170689641|ref|ZP_02880823.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|177653236|ref|ZP_02935488.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190566990|ref|ZP_03019906.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|196034450|ref|ZP_03101859.1| rrf2 family protein [Bacillus cereus W]
gi|196039239|ref|ZP_03106545.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|196044851|ref|ZP_03112085.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|206969679|ref|ZP_03230633.1| rrf2 family protein [Bacillus cereus AH1134]
gi|206976049|ref|ZP_03236959.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|217961888|ref|YP_002340458.1| rrf2 family protein [Bacillus cereus AH187]
gi|218235656|ref|YP_002369208.1| rrf2 family protein [Bacillus cereus B4264]
gi|218899567|ref|YP_002447978.1| rrf2 family protein [Bacillus cereus G9842]
gi|218905593|ref|YP_002453427.1| rrf2 family protein [Bacillus cereus AH820]
gi|222097841|ref|YP_002531898.1| transcriptional regulator [Bacillus cereus Q1]
gi|225866380|ref|YP_002751758.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|227817177|ref|YP_002817186.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|228902926|ref|ZP_04067067.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222]
gi|228910234|ref|ZP_04074052.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200]
gi|228917032|ref|ZP_04080592.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228923150|ref|ZP_04086441.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228929443|ref|ZP_04092464.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935719|ref|ZP_04098532.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228941566|ref|ZP_04104115.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228948112|ref|ZP_04110396.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228954683|ref|ZP_04116706.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228960670|ref|ZP_04122315.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228967473|ref|ZP_04128502.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228974496|ref|ZP_04135063.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228981090|ref|ZP_04141391.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407]
gi|228987650|ref|ZP_04147764.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228993136|ref|ZP_04153058.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442]
gi|228999185|ref|ZP_04158767.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17]
gi|229006733|ref|ZP_04164367.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4]
gi|229032048|ref|ZP_04188031.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271]
gi|229048106|ref|ZP_04193679.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676]
gi|229071907|ref|ZP_04205118.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185]
gi|229081663|ref|ZP_04214158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2]
gi|229086961|ref|ZP_04219118.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44]
gi|229093469|ref|ZP_04224572.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42]
gi|229098870|ref|ZP_04229806.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29]
gi|229105032|ref|ZP_04235686.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28]
gi|229111871|ref|ZP_04241417.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15]
gi|229117895|ref|ZP_04247257.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3]
gi|229123939|ref|ZP_04253131.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201]
gi|229129679|ref|ZP_04258647.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4]
gi|229141135|ref|ZP_04269677.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26]
gi|229146969|ref|ZP_04275333.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24]
gi|229152602|ref|ZP_04280791.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550]
gi|229158014|ref|ZP_04286085.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342]
gi|229163347|ref|ZP_04291299.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803]
gi|229175072|ref|ZP_04302590.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3]
gi|229180674|ref|ZP_04308014.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W]
gi|229186638|ref|ZP_04313799.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1]
gi|229192610|ref|ZP_04319571.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876]
gi|229198525|ref|ZP_04325229.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293]
gi|229600467|ref|YP_002868685.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|254684154|ref|ZP_05148014.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
gi|254724675|ref|ZP_05186458.1| rrf2 family protein [Bacillus anthracis str. A1055]
gi|254736501|ref|ZP_05194207.1| rrf2 family protein [Bacillus anthracis str. Western North America
USA6153]
gi|254741539|ref|ZP_05199226.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
gi|254751362|ref|ZP_05203399.1| rrf2 family protein [Bacillus anthracis str. Vollum]
gi|254757694|ref|ZP_05209721.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
gi|296504891|ref|YP_003666591.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|300119220|ref|ZP_07056917.1| rrf2 family protein [Bacillus cereus SJ1]
gi|301055906|ref|YP_003794117.1| putative transcriptional regulator [Bacillus anthracis CI]
gi|29898032|gb|AAP11306.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|30259126|gb|AAP28331.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|42739456|gb|AAS43382.1| rrf2 family protein [Bacillus cereus ATCC 10987]
gi|47505074|gb|AAT33750.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|47556616|gb|EAL14948.1| RRF2 family protein [Bacillus cereus G9241]
gi|49181216|gb|AAT56592.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|49330182|gb|AAT60828.1| probable transcriptional regulator [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51974576|gb|AAU16126.1| probable transcriptional regulator [Bacillus cereus E33L]
gi|118418781|gb|ABK87200.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
str. Al Hakam]
gi|167513497|gb|EDR88867.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|167528095|gb|EDR90892.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|170666411|gb|EDT17192.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|172081518|gb|EDT66590.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190561981|gb|EDV15950.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|195992992|gb|EDX56951.1| rrf2 family protein [Bacillus cereus W]
gi|196024339|gb|EDX63012.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|196029866|gb|EDX68467.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|206735367|gb|EDZ52535.1| rrf2 family protein [Bacillus cereus AH1134]
gi|206745801|gb|EDZ57198.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|217066112|gb|ACJ80362.1| rrf2 family protein [Bacillus cereus AH187]
gi|218163613|gb|ACK63605.1| rrf2 family protein [Bacillus cereus B4264]
gi|218539499|gb|ACK91897.1| rrf2 family protein [Bacillus cereus AH820]
gi|218541342|gb|ACK93736.1| rrf2 family protein [Bacillus cereus G9842]
gi|221241899|gb|ACM14609.1| probable transcriptional regulator [Bacillus cereus Q1]
gi|225789058|gb|ACO29275.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|227007748|gb|ACP17491.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|228585028|gb|EEK43142.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1293]
gi|228590917|gb|EEK48775.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 10876]
gi|228596897|gb|EEK54556.1| Transcriptional regulator, Rrf2 [Bacillus cereus BGSC 6E1]
gi|228602819|gb|EEK60300.1| Transcriptional regulator, Rrf2 [Bacillus cereus 172560W]
gi|228608440|gb|EEK65744.1| Transcriptional regulator, Rrf2 [Bacillus cereus MM3]
gi|228620128|gb|EEK77002.1| Transcriptional regulator, Rrf2 [Bacillus cereus R309803]
gi|228625467|gb|EEK82223.1| Transcriptional regulator, Rrf2 [Bacillus cereus ATCC 4342]
gi|228630863|gb|EEK87503.1| Transcriptional regulator, Rrf2 [Bacillus cereus m1550]
gi|228636568|gb|EEK93034.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST24]
gi|228642413|gb|EEK98702.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST26]
gi|228653796|gb|EEL09666.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-Cer4]
gi|228659241|gb|EEL14889.1| Transcriptional regulator, Rrf2 [Bacillus cereus 95/8201]
gi|228665552|gb|EEL21032.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-3]
gi|228671627|gb|EEL26925.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock1-15]
gi|228678409|gb|EEL32632.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-28]
gi|228684543|gb|EEL38485.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-29]
gi|228689940|gb|EEL43744.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-42]
gi|228696337|gb|EEL49165.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock3-44]
gi|228701667|gb|EEL54158.1| Transcriptional regulator, Rrf2 [Bacillus cereus Rock4-2]
gi|228711203|gb|EEL63167.1| Transcriptional regulator, Rrf2 [Bacillus cereus F65185]
gi|228723261|gb|EEL74633.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH676]
gi|228729293|gb|EEL80287.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1271]
gi|228754594|gb|EEM04005.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock1-4]
gi|228760802|gb|EEM09766.1| Transcriptional regulator, Rrf2 [Bacillus mycoides Rock3-17]
gi|228766595|gb|EEM15236.1| Transcriptional regulator, Rrf2 [Bacillus pseudomycoides DSM 12442]
gi|228772110|gb|EEM20562.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228778631|gb|EEM26897.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis Bt407]
gi|228785213|gb|EEM33225.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228792250|gb|EEM39823.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
sotto str. T04001]
gi|228799034|gb|EEM46006.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
pakistani str. T13001]
gi|228805010|gb|EEM51606.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
kurstaki str. T03a001]
gi|228811470|gb|EEM57807.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228818122|gb|EEM64198.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
berliner ATCC 10792]
gi|228823957|gb|EEM69776.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830231|gb|EEM75847.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228836529|gb|EEM81879.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228842639|gb|EEM87727.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228849398|gb|EEM94234.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 200]
gi|228856710|gb|EEN01229.1| Transcriptional regulator, Rrf2 [Bacillus thuringiensis IBL 4222]
gi|229264875|gb|ACQ46512.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|296325943|gb|ADH08871.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|298723440|gb|EFI64185.1| rrf2 family protein [Bacillus cereus SJ1]
gi|300378075|gb|ADK06979.1| probable transcriptional regulator [Bacillus cereus biovar
anthracis str. CI]
gi|324328301|gb|ADY23561.1| putative transcriptional regulator [Bacillus thuringiensis serovar
finitimus YBT-020]
gi|326942180|gb|AEA18076.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 138
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG
Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L IT DV++ E V E + + + +A
Sbjct: 61 AYGGYVLSDQPANITAGDVIRVLEGPISVVEMIEEEEP--------AQRQLWMRVRDAVQ 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL ++E LVR
Sbjct: 113 EVLDSTTLEDLVRYEEE 129
>gi|163856927|ref|YP_001631225.1| putative DNA-binding protein [Bordetella petrii DSM 12804]
gi|163260655|emb|CAP42957.1| putative conserved DNA-binding protein [Bordetella petrii]
Length = 145
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+RVLMY +D P I +IA +S + K++ L + G V T R
Sbjct: 1 MQLTRYTDFGLRVLMYLTQGDDRAVPATIPEIAARFNVSRNHMVKVVHFLARQGWVATTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+RL P + D+V+A E + C C L G C L+ VL +L F
Sbjct: 61 GKGGGLRLAHPPSAYRVGDLVRALEHQGALINCAE---PPCALNGLCRLSGVLADSLQVF 117
Query: 119 FDVLTQYSIECLVRNRSS 136
+D L ++++ LVR+ ++
Sbjct: 118 YDALNRHTLADLVRSPTA 135
>gi|295399330|ref|ZP_06809312.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|312110109|ref|YP_003988425.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y4.1MC1]
gi|294978796|gb|EFG54392.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|311215210|gb|ADP73814.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y4.1MC1]
Length = 138
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT DV++ E E + + + +A
Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLEGPISPVEELDEEEPAK--------RELWIRVRDAVE 112
Query: 120 DVLTQYSIECLVR 132
+VL ++E L +
Sbjct: 113 EVLDSTTLEDLAK 125
>gi|225075994|ref|ZP_03719193.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens
NRL30031/H210]
gi|224952709|gb|EEG33918.1| hypothetical protein NEIFLAOT_01020 [Neisseria flavescens
NRL30031/H210]
Length = 152
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 56/135 (41%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IAE IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDTLVNISTIAETYNISKSHLMKVVTSLVKGGFLVSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL ++I I VV+ E V EC +C + SC LT ++ A+ AFF+
Sbjct: 61 GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGE-NNECLITPSCRLTGIITGAIKAFFN 118
Query: 121 VLTQYSIECLVRNRS 135
L QYS++ L+ +
Sbjct: 119 HLDQYSLQDLLDKPT 133
>gi|167628913|ref|YP_001679412.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
modesticaldum Ice1]
gi|167591653|gb|ABZ83401.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
modesticaldum Ice1]
Length = 161
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++K+TDY +R L A + P + ++AE I + FL I+ + + V +V G
Sbjct: 1 MKISKKTDYALRALCDLAECYGKDPIPLRELAEKRGIPKRFLEHIMLYMKEKKWVASVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L P ++IT+ +VV+ + C + + C SC ++ +
Sbjct: 61 KYGGYVLACPPEEITLGEVVRHFDGILAPIGCVSVTQYQCCAEEKSCKFRPLMADIRDFV 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
+ ++ ++ +
Sbjct: 121 AKQMDSTTLRSIIEGAPML 139
>gi|317122069|ref|YP_004102072.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thermaerobacter marianensis DSM 12885]
gi|315592049|gb|ADU51345.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
marianensis DSM 12885]
Length = 141
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + A + P + ++AEA + E +L +++ PL K G+V++VRG
Sbjct: 1 MQLSTRGRYGVRAMFELARRYGQGPVPLREVAEAQQLPENYLEQLMAPLRKGGLVQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R QIT+ D+V+ + V A
Sbjct: 61 AQGGYVLARSPRQITVADIVRLLDGPI------GPETDQEATGTPSVADPVWEAVRQAIT 114
Query: 120 DVLTQYSIECLVRNRSSIKK 139
DVL +++ LVR ++
Sbjct: 115 DVLEGTTLDDLVRQAEERQR 134
>gi|315499746|ref|YP_004088549.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
excentricus CB 48]
gi|315417758|gb|ADU14398.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
excentricus CB 48]
Length = 172
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 64/156 (41%), Gaps = 18/156 (11%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + + A++ P +S+I+E IS +L ++ L KAG+V++ RG
Sbjct: 1 MRLSTKGRYAVMAMTDLALNAQGKPISLSEISERQQISLSYLEQLFARLRKAGLVKSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-----------------FASHKIDCPLV 102
GG L R AD + + ++V A +E C A P
Sbjct: 61 PGGGYTLARTADALFVSEIVLAVDEPIKATRCALTSNKLGANKRLSKESAAREIGCMPGG 120
Query: 103 GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
C ++ A D L+ S+ +V R+ +
Sbjct: 121 QRCLTHNLWEDLGFAIHDYLSTVSLNDVVHKRTRKR 156
>gi|59801857|ref|YP_208569.1| hypothetical protein NGO1519 [Neisseria gonorrhoeae FA 1090]
gi|194099329|ref|YP_002002430.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945]
gi|239999588|ref|ZP_04719512.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
gi|240014762|ref|ZP_04721675.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI18]
gi|240017211|ref|ZP_04723751.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA6140]
gi|240081152|ref|ZP_04725695.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
gi|240113364|ref|ZP_04727854.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
gi|240116288|ref|ZP_04730350.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
gi|240118576|ref|ZP_04732638.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
gi|240121285|ref|ZP_04734247.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID24-1]
gi|240124119|ref|ZP_04737075.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
gi|240126265|ref|ZP_04739151.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
gi|240128788|ref|ZP_04741449.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
gi|254494301|ref|ZP_05107472.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291]
gi|260439895|ref|ZP_05793711.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
gi|268595398|ref|ZP_06129565.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
gi|268597263|ref|ZP_06131430.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
gi|268599439|ref|ZP_06133606.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
gi|268601953|ref|ZP_06136120.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
gi|268604283|ref|ZP_06138450.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
gi|268682742|ref|ZP_06149604.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
gi|268684848|ref|ZP_06151710.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
gi|268687169|ref|ZP_06154031.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
gi|291043171|ref|ZP_06568894.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
gi|293398504|ref|ZP_06642682.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62]
gi|59718752|gb|AAW90157.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
gi|193934619|gb|ACF30443.1| Nitric oxide-sensitive repressor [Neisseria gonorrhoeae NCCP11945]
gi|226513341|gb|EEH62686.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 1291]
gi|268548787|gb|EEZ44205.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae 35/02]
gi|268551051|gb|EEZ46070.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae FA19]
gi|268583570|gb|EEZ48246.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae MS11]
gi|268586084|gb|EEZ50760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID18]
gi|268588414|gb|EEZ53090.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID1]
gi|268623026|gb|EEZ55426.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae PID332]
gi|268625132|gb|EEZ57532.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-92-679]
gi|268627453|gb|EEZ59853.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae SK-93-1035]
gi|291012777|gb|EFE04760.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae DGI2]
gi|291610975|gb|EFF40072.1| nitric oxide-sensitive repressor [Neisseria gonorrhoeae F62]
gi|317164836|gb|ADV08377.1| hypothetical protein NGTW08_1415 [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 147
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y A+++D I+ IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAVNDDALVNIATIASTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P ++I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLAAPPERINIGAVVRHL-EPMQLVECMGP-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|297624030|ref|YP_003705464.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
DSM 17093]
gi|297165210|gb|ADI14921.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
DSM 17093]
Length = 149
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 71/138 (51%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R YG+R L+ A+ + + ++E IS+ +L +I+ L +AGIVE+VRG
Sbjct: 1 MWISTRAQYGMRALVEIAL-SGETTSLKVVSERQGISQHYLEQIVAVLRRAGIVESVRGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R+ RP ++T L+VV+ E S C C G+C S+ + A +
Sbjct: 60 YGGYRMARPMHEVTALEVVELMEGSLAPVACIEDE-ACCEYTGNCSTQSLWERVDRAVRE 118
Query: 121 VLTQYSIECLVRNRSSIK 138
VL +I LV R ++
Sbjct: 119 VLGSTTIGDLVAERQLLQ 136
>gi|103486029|ref|YP_615590.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98976106|gb|ABF52257.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
alaskensis RB2256]
Length = 143
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ +DY +R+LM A + + +IA IS L K+ Q L G V RGR
Sbjct: 1 MRLSLHSDYALRILMALAATGEQ-MSVDEIASHYGISRNHLAKVAQRLQALGYVSAQRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R ++ VV+ E + EC CP+ G CGL L AL AF
Sbjct: 60 GGGLTLARAPSEVIAGTVVREFENLGGLVECMDPATSTCPVRGGCGLQGALGGALAAFLA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L +Y++ L+ + + + A
Sbjct: 120 HLDRYTLADLLPQPARFRALLGA 142
>gi|154686893|ref|YP_001422054.1| YrzC [Bacillus amyloliquefaciens FZB42]
gi|154352744|gb|ABS74823.1| YrzC [Bacillus amyloliquefaciens FZB42]
Length = 138
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H D P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGDGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLV 131
DVL ++E L
Sbjct: 113 DVLDSTTLEDLA 124
>gi|110347078|ref|YP_665896.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110283189|gb|ABG61249.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
BNC1]
Length = 153
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+LMY A D I + A A +S+ L K+ L + G ++ VRGR
Sbjct: 1 MRLTSFSDYALRMLMYAATAGDRLITIEEAARAFSVSKTHLNKVANTLTRGGYLKAVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R + I I DV++ TE F + ECFA+ C L SC L+ +L +A+ +F +
Sbjct: 61 SGGLMLDRRPETIRIGDVIRMTEPDFALVECFATGNQ-CILTNSCKLSGMLGEAMASFHE 119
Query: 121 VLTQYSIECL 130
L +Y++ +
Sbjct: 120 TLDRYTLADI 129
>gi|291542545|emb|CBL15655.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus bromii
L2-63]
Length = 135
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + VL+ A + + + +IAE IS+ ++ IL+ LV ++E V+G
Sbjct: 1 MLISSKGRYTLYVLVDLAKNGQNRYIPLKEIAERQNISKKYMEGILKTLVDRNLLEGVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + ++ ++++ TE C + C + SC + ++ N
Sbjct: 61 KGGGYKLTKEPKDYSLGEILRLTEGDLASVPCTSKTHEHCNHMESCPSHPIWQQLDNLIN 120
Query: 120 DVLTQYSIECLVRNR 134
+ L ++ L+ N
Sbjct: 121 NYLDSVTLANLLNNE 135
>gi|296313979|ref|ZP_06863920.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
polysaccharea ATCC 43768]
gi|296839409|gb|EFH23347.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
polysaccharea ATCC 43768]
Length = 149
Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAARINIAQIISAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
D L +++ ++ ++
Sbjct: 119 DYLGSVTLQSIIEQKT 134
>gi|34498942|ref|NP_903157.1| hypothetical protein CV_3487 [Chromobacterium violaceum ATCC 12472]
gi|34104791|gb|AAQ61148.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 146
Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 67/136 (49%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD G+RVLMY I +IAE +S L K++ + + G + T RG
Sbjct: 1 MQLTRFTDLGLRVLMYLTGQQPGQLATIPEIAERFEVSRNHLVKVVHFMAQQGWLVTSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L RP + + +VV+ E + +C C L C L L +AL AFF
Sbjct: 61 KGGGMTLARPPEHYRLGEVVRMLEGKPQLIDCVEP---PCALSRGCLLKGALDEALAAFF 117
Query: 120 DVLTQYSIECLVRNRS 135
L Y++ +V + +
Sbjct: 118 LSLDGYTLRDIVASPT 133
>gi|163942148|ref|YP_001647032.1| BadM/Rrf2 family transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229013616|ref|ZP_04170747.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048]
gi|229019620|ref|ZP_04176432.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273]
gi|229025860|ref|ZP_04182256.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272]
gi|229062093|ref|ZP_04199418.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603]
gi|229135221|ref|ZP_04264020.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196]
gi|229169141|ref|ZP_04296856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621]
gi|163864345|gb|ABY45404.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
weihenstephanensis KBAB4]
gi|228614369|gb|EEK71479.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH621]
gi|228648263|gb|EEL04299.1| Transcriptional regulator, Rrf2 [Bacillus cereus BDRD-ST196]
gi|228717245|gb|EEL68920.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH603]
gi|228735412|gb|EEL86011.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1272]
gi|228741668|gb|EEL91856.1| Transcriptional regulator, Rrf2 [Bacillus cereus AH1273]
gi|228747675|gb|EEL97547.1| Transcriptional regulator, Rrf2 [Bacillus mycoides DSM 2048]
Length = 138
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + P + IA+A +SE +L +++ PL A +V++ RG
Sbjct: 1 MKISTKGRYGLTIMIDLAKKFGEGPISLKSIAQAHDLSEHYLEQLISPLRNARLVKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L IT DV++ E V E + + + +A
Sbjct: 61 AYGGYVLSDQPVNITAGDVIRVLEGPISVVEMIEEEEP--------AQRQLWMRVRDAVQ 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL ++E LVR
Sbjct: 113 EVLDSTTLEDLVRYEEE 129
>gi|319407107|emb|CBI80744.1| conserved hypothetical protein [Bartonella sp. 1-1C]
Length = 151
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/130 (55%), Positives = 100/130 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + + +RI +IA +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1 MRLTKQTNYALRMLMYCASNQEALSRIPEIASTYAVSELFLFKILQPLVEAGFIKTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA +I++ DV+K TE++F +AECF + +CPL+ CGL VL+KAL++FFD
Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120
Query: 121 VLTQYSIECL 130
VL+ SI L
Sbjct: 121 VLSLTSIADL 130
>gi|239827836|ref|YP_002950460.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. WCH70]
gi|239808129|gb|ACS25194.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
Length = 138
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT DV++ E E + + + NA
Sbjct: 61 AYGGYVLADHPAKITAGDVIRVLEGPITPVEELDEEEPAK--------RELWIRIRNAVE 112
Query: 120 DVLTQYSIECLVR 132
+VL ++E L +
Sbjct: 113 EVLDNTTLEDLAK 125
>gi|149915740|ref|ZP_01904265.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. AzwK-3b]
gi|149810322|gb|EDM70167.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. AzwK-3b]
Length = 150
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/144 (38%), Positives = 80/144 (55%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ IRVLM+C + D S+IA C SE L +++ L + + T RGR
Sbjct: 1 MRITKRTNIAIRVLMFCGANIDRLVTKSEIAARCNTSESHLAQVINRLAQLDFLHTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RP D+I I DV + E + +AECFA CPLV +C L + A AF+
Sbjct: 61 SGGIALARPMDEIIIGDVFRQLESNVPIAECFADVDNTCPLVTACRLRHAIADAAEAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
L + +++ LV + ++ IF G
Sbjct: 121 HLDKITLDVLVCDNVALLDIFMPG 144
>gi|241760757|ref|ZP_04758848.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens
SK114]
gi|241318654|gb|EER55206.1| HTH-type transcriptional regulator NsrR [Neisseria flavescens
SK114]
Length = 152
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/135 (40%), Positives = 82/135 (60%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA+ IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLVYTAINDDSLVNISTIAKTYNISKSHLMKVVTSLVKGGFLVSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL ++I I VV+ E V EC +C + SC LT ++ A+ AFF+
Sbjct: 61 GGGLRLADVPEKINIGAVVRHL-EPMQVVECMGD-NNECLITPSCRLTGIITGAIKAFFN 118
Query: 121 VLTQYSIECLVRNRS 135
L QYS++ L+ +
Sbjct: 119 HLDQYSLQDLLDKPT 133
>gi|46580373|ref|YP_011181.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|46449790|gb|AAS96440.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311233650|gb|ADP86504.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
RCH1]
Length = 170
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/150 (24%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +T Y R+L+ A+H + P + ++E ++ F+ +IL+ L + G+ + RG
Sbjct: 1 MKLAAKTRYAARILLALAMHGEGAPMTTTSLSERTGVTVQFIEQILKTLKRGGLTRSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R D I++ D+V+ E + C C C S KA A
Sbjct: 61 AAGGHTLARKPDDISLGDIVRLMEGGIQLTVCCTGEPNACSRKSDCLTRSAWIKASQALE 120
Query: 120 DVLTQYSIECLV-----RNRSSIKKIFNAG 144
L + S+ L+ + + + + G
Sbjct: 121 AALDETSLTALMSGEVTHDERACRSLARTG 150
>gi|146279260|ref|YP_001169418.1| hypothetical protein Rsph17025_3229 [Rhodobacter sphaeroides ATCC
17025]
gi|145557501|gb|ABP72113.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17025]
Length = 144
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 76/132 (57%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RG
Sbjct: 1 MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMSLIHAGFLQGTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL RPA++I + +V++ATE F + ECF C + C L + KA+ +F
Sbjct: 61 RTGGFRLARPANEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPIFAKAVKSFM 119
Query: 120 DVLTQYSIECLV 131
D L Q++I ++
Sbjct: 120 DTLDQFTIADVM 131
>gi|328545191|ref|YP_004305300.1| transcriptional regulator superfamily [polymorphum gilvum
SL003B-26A1]
gi|326414933|gb|ADZ71996.1| Transcriptional regulator superfamily [Polymorphum gilvum
SL003B-26A1]
Length = 137
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 59/127 (46%), Positives = 90/127 (70%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MYCA + + P++++ IA + +SE LFKI++ LV G+++T+RGR GG+ L RPA++IT
Sbjct: 1 MYCAANPERPSKVADIAASFAMSETHLFKIMKVLVDGGLIKTIRGRNGGIVLARPANKIT 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
I +VV+ EESF++AECF S + DCP++ +CG VL +AL AF DVL +IE + NR
Sbjct: 61 IGEVVRVAEESFYLAECFNSGRKDCPILTTCGFNGVLHEALEAFMDVLDSKTIEDIAENR 120
Query: 135 SSIKKIF 141
++K+
Sbjct: 121 KDLRKLL 127
>gi|298370162|ref|ZP_06981478.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281622|gb|EFI23111.1| transcriptional repressor NsrR [Neisseria sp. oral taxon 014 str.
F0314]
Length = 150
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IAE IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAETYNISKSHLMKVVTALVKGGFLTSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L P ++I I VV+ E + EC +C + SC L +L + AF +
Sbjct: 61 GGGLKLAEPPEKINIGSVVRHL-EPMQLVECMGRD-NNCLITPSCRLADILSGGIKAFLN 118
Query: 121 VLTQYSIECLVRNRS 135
L +++ L+ +
Sbjct: 119 YLDGFTLSDLLNKPT 133
>gi|308174453|ref|YP_003921158.1| transcription repressor [Bacillus amyloliquefaciens DSM 7]
gi|307607317|emb|CBI43688.1| transcription repressor [Bacillus amyloliquefaciens DSM 7]
gi|328554372|gb|AEB24864.1| transcription repressor [Bacillus amyloliquefaciens TA208]
gi|328912776|gb|AEB64372.1| transcription repressor [Bacillus amyloliquefaciens LL3]
Length = 138
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNSLSEHYLEQLVSPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLGGQPEEITAGDIIRVLEGPISPVEVLEDEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLV 131
DVL ++E L
Sbjct: 113 DVLDSTTLEDLA 124
>gi|167856368|ref|ZP_02479095.1| sec-independent translocase [Haemophilus parasuis 29755]
gi|167852506|gb|EDS23793.1| sec-independent translocase [Haemophilus parasuis 29755]
Length = 147
Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 77/141 (54%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL+K TDY RVLMY A H D + I Q+AE+ +S+ L K++ + K G + T RG+
Sbjct: 1 MHLSKFTDYAFRVLMYLAHHQDEVHTIPQLAESLQVSQNHLVKVVHFMAKQGWLITARGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+R+ + + +V++ + + + +C + C L C L SVL AL F+
Sbjct: 61 GGGIRISSLILSMAVGEVIRTLQGNPRLIDCNS---PACILKPHCHLKSVLDHALEHFYQ 117
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L QYS+ + ++ IK I
Sbjct: 118 YLNQYSVSECIGSQKVIKGIL 138
>gi|311031536|ref|ZP_07709626.1| transcription repressor [Bacillus sp. m3-13]
Length = 138
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKNVGEGPLSLKTIAQTHDLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E E + + + +A
Sbjct: 61 AYGGYILADEPEKITAGDIIRVLEGPISPVEVIEDEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLVR 132
DVL +++ L
Sbjct: 113 DVLDSTTLDDLAN 125
>gi|331000240|ref|ZP_08323924.1| HTH-type transcriptional regulator IscR [Parasutterella
excrementihominis YIT 11859]
gi|329572406|gb|EGG54059.1| HTH-type transcriptional regulator IscR [Parasutterella
excrementihominis YIT 11859]
Length = 151
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+H + I+ I + +S +L +I L +AG++E VRG
Sbjct: 1 MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PADQIT++D+++A ++ A C ++ C G C +
Sbjct: 61 PAGGYRLAKPADQITVIDILEAVDDPLEKASC-DKNRAVCDGEGECITFDLWESLNEEIR 119
Query: 120 DVLTQYSIECLVRNRS 135
L S++ L +
Sbjct: 120 KFLKGISLKNLADKKK 135
>gi|33596274|ref|NP_883917.1| putative DNA-binding protein [Bordetella parapertussis 12822]
gi|33602066|ref|NP_889626.1| putative DNA-binding protein [Bordetella bronchiseptica RB50]
gi|33566043|emb|CAE36939.1| putative conserved DNA-binding protein [Bordetella parapertussis]
gi|33576504|emb|CAE33582.1| putative conserved DNA-binding protein [Bordetella bronchiseptica
RB50]
Length = 156
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L + TD+G+RV+MY D P I +IA IS L K++ L + G + R
Sbjct: 12 MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 71
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+RL R A + I ++V+ E+ + C + C L G+C L+ L ++L AF
Sbjct: 72 GKGGGLRLARDAVEYRIGELVRVLEDQGALVNCA---QPPCVLNGACRLSGALAESLQAF 128
Query: 119 FDVLTQYSIECLVRNRSSI 137
+ L Y+++ LVR +++
Sbjct: 129 YRTLDGYTLDDLVRAPTAL 147
>gi|150016622|ref|YP_001308876.1| BadM/Rrf2 family transcriptional regulator [Clostridium
beijerinckii NCIMB 8052]
gi|149903087|gb|ABR33920.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
beijerinckii NCIMB 8052]
Length = 142
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 5/140 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ I + + I+E ISE +L +I L K GI+ +G
Sbjct: 1 MKISTKGRYGLRALIDICIFSVSEMVTVKSISERQGISERYLEQIFSSLRKGGIINAKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + + TI D++ E + + + + ++ N
Sbjct: 61 AQGGYFLAKSSREFTIGDILNVLEGDLLLIDIENDENE----IENFMSENLWNVINNKII 116
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ ++E LV + K
Sbjct: 117 NFFNSITLEDLVNDYKKYNK 136
>gi|319404095|emb|CBI77683.1| conserved hypothetical protein [Bartonella rochalimae ATCC
BAA-1498]
Length = 151
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 72/130 (55%), Positives = 100/130 (76%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + + +RI +IA +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1 MRLTKQTNYALRMLMYCASNQEALSRIPEIANTYAVSELFLFKILQPLVEAGFMKTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA +I++ DV+K TE++F +AECF + +CPL+ CGL VL+KAL++FFD
Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFSMAECFDNQSSNCPLINFCGLNIVLKKALDSFFD 120
Query: 121 VLTQYSIECL 130
VL+ SI L
Sbjct: 121 VLSLTSIADL 130
>gi|15676349|ref|NP_273485.1| hypothetical protein NMB0437 [Neisseria meningitidis MC58]
gi|254805531|ref|YP_003083752.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
gi|7225662|gb|AAF40875.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|254669073|emb|CBA07596.1| putative transcriptional regulator [Neisseria meningitidis alpha14]
gi|308388639|gb|ADO30959.1| hypothetical protein NMBB_0481 [Neisseria meningitidis alpha710]
gi|316984950|gb|EFV63906.1| rrf2 family protein [Neisseria meningitidis H44/76]
gi|325128852|gb|EGC51711.1| transcriptional repressor nsrR [Neisseria meningitidis N1568]
gi|325130805|gb|EGC53539.1| transcriptional repressor nsrR [Neisseria meningitidis OX99.30304]
gi|325132983|gb|EGC55660.1| transcriptional repressor nsrR [Neisseria meningitidis M6190]
gi|325134903|gb|EGC57536.1| transcriptional repressor nsrR [Neisseria meningitidis M13399]
gi|325137004|gb|EGC59601.1| transcriptional repressor nsrR [Neisseria meningitidis M0579]
gi|325138971|gb|EGC61521.1| transcriptional repressor nsrR [Neisseria meningitidis ES14902]
gi|325140951|gb|EGC63458.1| transcriptional repressor nsrR [Neisseria meningitidis CU385]
gi|325142952|gb|EGC65310.1| transcriptional repressor nsrR [Neisseria meningitidis 961-5945]
gi|325144975|gb|EGC67258.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240013]
gi|325199624|gb|ADY95079.1| transcriptional repressor nsrR [Neisseria meningitidis H44/76]
gi|325202752|gb|ADY98206.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240149]
gi|325203544|gb|ADY98997.1| transcriptional repressor nsrR [Neisseria meningitidis M01-240355]
gi|325205505|gb|ADZ00958.1| transcriptional repressor nsrR [Neisseria meningitidis M04-240196]
gi|325208748|gb|ADZ04200.1| transcriptional repressor nsrR [Neisseria meningitidis NZ-05/33]
Length = 147
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/135 (39%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLAAPPDRINIGSVVRHL-EPMQLVECMGE-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|218768796|ref|YP_002343308.1| hypothetical protein NMA2048 [Neisseria meningitidis Z2491]
gi|121052804|emb|CAM09151.1| conserved hypothetical protein [Neisseria meningitidis Z2491]
gi|319411035|emb|CBY91435.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
WUE 2594]
Length = 147
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 52/135 (38%), Positives = 80/135 (59%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P ++I I VV+ E + EC +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLASPPERINIGAVVRHL-EPMQLVECMGE-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|163786651|ref|ZP_02181099.1| transcriptional regulator, rrf2 family protein [Flavobacteriales
bacterium ALC-1]
gi|159878511|gb|EDP72567.1| transcriptional regulator, rrf2 family protein [Flavobacteriales
bacterium ALC-1]
Length = 136
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L+Y A P +IS+I+++ IS FL IL L K GI+ + +G+
Sbjct: 2 LSKKTKYGIKALVYLAKQKKRDPVQISEISKSENISRKFLESILLTLRKNGILGSKKGKN 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + ++I + +++ E + C + DCP +C + +V+ K +
Sbjct: 62 GGYYLLKEPNEIPMTSIMRLLEGPIAMVPCVSLNFYEKCDDCPDENACAVHNVMLKVRDN 121
Query: 118 FFDVLTQYSIECL 130
D+ ++ L
Sbjct: 122 TLDIFRNTTLADL 134
>gi|295094610|emb|CBK83701.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus sp.
ART55/1]
Length = 136
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +RV+ AI H+ + +I + +S+ +L I++ L KA ++E G
Sbjct: 1 MVISSKGEYALRVMADLAINHDGRFIPLKEIVQKEELSQKYLESIMRMLSKANLIEAASG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + ++ T+ ++++ TE C + + C G C + +
Sbjct: 61 HGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSAMTCDRSGQCYTLPIWQGLAELIQ 120
Query: 120 DVLTQYSIECLVRN 133
D ++ + RN
Sbjct: 121 DYFQGKTLADIARN 134
>gi|237747556|ref|ZP_04578036.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
gi|229378918|gb|EEO29009.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
Length = 155
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ H + P ++ I+E IS +L ++ L + +V+++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLTRHQETGPVSLAGISERQDISVAYLEQLFSKLRRKNLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
GG L A IT+ D+V A +E V C + +C C ++
Sbjct: 61 PGGGYILANDAADITVADIVFAVDEPLDVTRCGGNG--NCARGSIKCISHNLWASLNEKI 118
Query: 119 FDVLTQYSIECL 130
D L + L
Sbjct: 119 IDYLESVPLSEL 130
>gi|225028923|ref|ZP_03718115.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353]
gi|224953762|gb|EEG34971.1| hypothetical protein EUBHAL_03212 [Eubacterium hallii DSM 3353]
Length = 140
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +RV++ A H + + IA+ IS+ +L IL+ LVK +++ +RG+
Sbjct: 2 ISTKGRYALRVMLDLAEHGNEGYIPLKDIAKRQAISDKYLESILKSLVKQKMLKGLRGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L R + ++ ++++ E + C DCP C + +K + D
Sbjct: 62 GGYQLTRTPAEYSVGEILEVAEGTLAPVACLMDDAEDCPRANQCRTLPMWKKFDSLVHDF 121
Query: 122 LTQYSIECLVRNRSSI 137
++E ++ + +
Sbjct: 122 FYNITLEQILEDPKFL 137
>gi|254518111|ref|ZP_05130167.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226911860|gb|EEH97061.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 132
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 76/131 (58%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L+K TDY R L+Y A + D + ++A+ ISE L KI+ L K +V +++GR
Sbjct: 1 MYLSKFTDYSFRALVYLAENRDKLCTVEELAKKLEISEHHLKKIIHKLAKTDLVISMKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L I + +VV+ TE++ +A+CF+ + C L ++ ++L+AF
Sbjct: 61 TGGLKLGLEPQDINLGEVVRITEDNLNIAQCFSKEDCCPFITSGCKLKGIMNESLSAFLH 120
Query: 121 VLTQYSIECLV 131
++Y+++ L+
Sbjct: 121 EFSRYTLQDLL 131
>gi|33593212|ref|NP_880856.1| putative DNA-binding protein [Bordetella pertussis Tohama I]
gi|33563587|emb|CAE42488.1| putative conserved DNA-binding protein [Bordetella pertussis Tohama
I]
gi|332382623|gb|AEE67470.1| putative DNA-binding protein [Bordetella pertussis CS]
Length = 145
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L + TD+G+RV+MY D P I +IA IS L K++ L + G + R
Sbjct: 1 MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+RL R A + I ++V+ E+ + C + C L G+C L+ L ++L AF
Sbjct: 61 GKGGGLRLARDAVEYRIGELVRVLEDQGALVNCA---QPPCVLNGACRLSGALAESLQAF 117
Query: 119 FDVLTQYSIECLVRNRSSI 137
+ L Y+++ LVR +++
Sbjct: 118 YRTLDGYTLDDLVRAPTAL 136
>gi|262275147|ref|ZP_06052958.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia
hollisae CIP 101886]
gi|262221710|gb|EEY73024.1| nitrite-sensitive transcriptional repressor NsrR [Grimontia
hollisae CIP 101886]
Length = 144
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R LMY A + I+ + E +S + KI+ + +AG VE VRG
Sbjct: 1 MQLTSFTDYGLRALMYLAMLPPGELTSITVVTEKYGVSRNHMVKIIHRMSQAGFVEAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA+ I I DV+++ E + C +C + +C L + + KAL AF
Sbjct: 61 KNGGIRLGKPAELIVIGDVIRSL-EPLQLVNCAPQ---NCHITPACRLKTAIAKALTAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ +Y++ +V ++ +
Sbjct: 117 AEMDKYTLHDMVSGNDDLQHLL 138
>gi|295108297|emb|CBL22250.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
A2-162]
Length = 144
Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG++ L+ +H + I IA IS+ +L +++ L KAG+VE+ RG
Sbjct: 1 MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL RPA +I++ DV++ E S A+C + C C V ++ ++
Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQCSGMEDESTCENHDICVTKYVWKRINDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ ++ L+ +K
Sbjct: 121 TQAVDTMMLDQLIEESRKKQK 141
>gi|139439175|ref|ZP_01772627.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC
25986]
gi|133775522|gb|EBA39342.1| Hypothetical protein COLAER_01637 [Collinsella aerofaciens ATCC
25986]
Length = 143
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y +R+++Y A D + ++A+ IS+ +L ++++PL+KAG++ +VR
Sbjct: 1 MLISSKGRYALRLMIYIAALGDAEDKIALREVADREHISQKYLEQLVRPLMKAGLLRSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG + + ++ D+++A E S C C C R +
Sbjct: 61 GKGGGYMMAKDPAEVRAGDILRAVEGSTAPVAC-DGIDNSCTRSDLCSTVKFWRGLDDVI 119
Query: 119 FDVLTQYSIECLVR 132
+ ++ L
Sbjct: 120 EKYVDGVTLADLAA 133
>gi|303257496|ref|ZP_07343508.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderiales bacterium 1_1_47]
gi|302859466|gb|EFL82545.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderiales bacterium 1_1_47]
Length = 151
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 66/136 (48%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+H + I+ I + +S +L +I L +AG++E VRG
Sbjct: 1 MKLTTKGRFAVTAMLDIALHDPEEYVSIAAIGDRRHLSSAYLEQIFGKLRRAGLLEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PADQIT++D+++A ++ A C ++ C G C +
Sbjct: 61 PAGGYRLAKPADQITVIDILEAVDDPLEKASC-DKNRAVCDGEGECITFDLWESLNEEIR 119
Query: 120 DVLTQYSIECLVRNRS 135
L S++ L +
Sbjct: 120 KFLKGISLKNLADKKK 135
>gi|148260837|ref|YP_001234964.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
JF-5]
gi|326404231|ref|YP_004284313.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
AIU301]
gi|146402518|gb|ABQ31045.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
JF-5]
gi|325051093|dbj|BAJ81431.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium multivorum
AIU301]
Length = 139
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/128 (39%), Positives = 66/128 (51%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
LT TDYG+R LM AI D S +A +S L KIL LV G + + RG G
Sbjct: 5 LTNYTDYGLRALMLLAIEPDRVQSTSALATRLDVSRHHLAKILMDLVAGGYLLSSRGPTG 64
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
GVRL +P QI I DVV+ E + ECF + C L+ +C L L +A +AF + L
Sbjct: 65 GVRLAKPPGQIRIGDVVRYLERDQAMVECFRADGGQCNLLPACRLRQTLNRAKDAFIETL 124
Query: 123 TQYSIECL 130
S+ +
Sbjct: 125 NGKSLADM 132
>gi|46914863|emb|CAG21640.1| conserved hypothetical protein [Photobacterium profundum SS9]
Length = 151
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + IS++ E +S + KI+ L + G V+TVRG+
Sbjct: 9 QLTSFTDYGLRALIYLATLPEGELTSISKVTEVYGVSRNHMVKIINKLGQLGYVDTVRGK 68
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL PA++I + DVV+AT E + C C + +C L +L A +AF
Sbjct: 69 NGGIRLGMPANRIILGDVVRAT-EPLQIVNCSEDF---CHITPACQLKGILASARSAFLA 124
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
L ++++ L+ N + + +
Sbjct: 125 ELDKHTLLSLIDNNPPLLVLLD 146
>gi|262377318|ref|ZP_06070542.1| transcriptional regulator [Acinetobacter lwoffii SH145]
gi|262307771|gb|EEY88910.1| transcriptional regulator [Acinetobacter lwoffii SH145]
Length = 146
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 72/135 (53%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A D P I+++AE +S+ KI+ + K + T RG+
Sbjct: 1 MQLNKFTDYALRILMYVAQPRDLPYTIAELAERLQVSQNHAMKIVHFMAKQDWLITTRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + + + + +V+ + V EC + C L +CGL +L A+ F+
Sbjct: 61 GGGIRLNQASLNLQLGQIVRILQRDSNVVECNS---PPCVLRPTCGLKGILDDAVEQFYS 117
Query: 121 VLTQYSIECLVRNRS 135
L QY ++ ++ R+
Sbjct: 118 SLDQYVLKDVITPRN 132
>gi|299822827|ref|ZP_07054713.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
gi|299816356|gb|EFI83594.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
Length = 148
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ V + A + P + IAEA +SE +L +++ PL AGIV+++RG
Sbjct: 8 MKITTKGRYGLTVTLELARQVGNGPISLRSIAEAKGLSEHYLEQLIGPLRNAGIVKSIRG 67
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT DV++ E + E + + + + NA
Sbjct: 68 AYGGYVLNHDPSEITAGDVIRTLEGPIVLVEGMENEES--------AQRELWTRMRNAVR 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL ++ L+ + + + +
Sbjct: 120 DVLDNTTLSDLLAHSENERAL 140
>gi|78355282|ref|YP_386731.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78217687|gb|ABB37036.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 220
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ RT Y R+L+ A H D P S ++E +S F+ +I++PL KA ++ +VRG
Sbjct: 52 MKLSARTRYAARLLLDLAQHATDAPRTASALSEQTGVSVQFIEQIIKPLKKAKLINSVRG 111
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +IT+ +V E + +C +++ C +C +
Sbjct: 112 AAGGHMLSRAPSEITLAQIVDVMEGGIRLTDCCTDNEL-CTRTPTCKTRVAWLRISEVLE 170
Query: 120 DVLTQYSIECLVRNRS 135
L ++E L+
Sbjct: 171 RELNSITLEDLMSGEH 186
>gi|255767629|ref|NP_390630.2| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis subsp. subtilis str. 168]
gi|296333158|ref|ZP_06875611.1| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305675336|ref|YP_003867008.1| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis subsp. spizizenii str. W23]
gi|321312279|ref|YP_004204566.1| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis BSn5]
gi|229462859|sp|O34527|CYMR_BACSU RecName: Full=HTH-type transcriptional regulator CymR; AltName:
Full=Cysteine metabolism repressor
gi|225185257|emb|CAB14694.2| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis subsp. subtilis str. 168]
gi|296149356|gb|EFG90252.1| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis subsp. spizizenii ATCC 6633]
gi|305413580|gb|ADM38699.1| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis subsp. spizizenii str. W23]
gi|320018553|gb|ADV93539.1| transcriptional regulator of cysteine biosynthesis [Bacillus
subtilis BSn5]
Length = 138
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L D IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLV 131
+VL ++E L
Sbjct: 113 EVLDSTTLEDLA 124
>gi|121635429|ref|YP_975674.1| hypothetical protein NMC1725 [Neisseria meningitidis FAM18]
gi|120867135|emb|CAM10902.1| conserved hypothetical protein [Neisseria meningitidis FAM18]
gi|254672733|emb|CBA06710.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
gi|325198879|gb|ADY94335.1| transcriptional repressor nsrR [Neisseria meningitidis G2136]
Length = 147
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D+I I VV+ E + EC S +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLATPPDRINIGSVVRHL-EPMQLVECMGS-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|330831524|ref|YP_004394476.1| Rrf2 family protein [Aeromonas veronii B565]
gi|328806660|gb|AEB51859.1| Rrf2 family protein [Aeromonas veronii B565]
Length = 150
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG
Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFGISRNHVVKIVHQLGIKGYIETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R A I + DVV E +C +C L G C + +LR+A+NAF
Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDCKRE---NCRLSGGCRIQGILRRAMNAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+VL +Y++ VR+ + + +
Sbjct: 118 EVLGEYTLADAVRDPNRLCHLLG 140
>gi|298246146|ref|ZP_06969952.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297553627|gb|EFH87492.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 174
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAG--IVETV 57
+ ++ + +YG+R+++ A H P ++ I++A + +L ++++ L A +V +
Sbjct: 2 LRVSTKGEYGVRIMVDLARHYGGRPRSLTDISQAETLPLAYLEQLVKLLRDADPPLVSST 61
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKAL 115
RG GG RL R ++I++ ++V+ E C ++ C + SC + +
Sbjct: 62 RGAHGGYRLNRDPNEISMGEIVRVLEGPISPMICATEGEMSQICGFIDSCKTKYLWARVR 121
Query: 116 NAFFDVLTQYSIECLVRN 133
+A L ++ LV
Sbjct: 122 DAVAQTLDSITLAELVAQ 139
>gi|153810455|ref|ZP_01963123.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174]
gi|149833634|gb|EDM88715.1| hypothetical protein RUMOBE_00836 [Ruminococcus obeum ATCC 29174]
Length = 144
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG++ L+ +H + I IA IS+ +L +++ L KAG+V++ RG
Sbjct: 1 MKLSTRARYGLKALIDLGLHCETEAVSIQSIASRQNISDSYLEQLMAKLKKAGLVDSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL RPA +I++ DV++ E S A+C + C C V ++ ++
Sbjct: 61 AGGGYRLGRPAAEISVGDVLRVLEGSLEAAQCSGMEDESTCENHDICVTKYVWKRINDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ ++ L+ ++
Sbjct: 121 TQAVDTMMLDQLIEESRKKQQ 141
>gi|77465342|ref|YP_354845.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
2.4.1]
gi|126464803|ref|YP_001045916.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|221369349|ref|YP_002520445.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides KD131]
gi|77389760|gb|ABA80944.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides 2.4.1]
gi|126106614|gb|ABN79144.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17029]
gi|221162401|gb|ACM03372.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides KD131]
Length = 145
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 50/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RG
Sbjct: 1 MRLTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL RPA +I + +V++ATE F + ECF C + C L +L KA+++F
Sbjct: 61 RTGGFRLARPASEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPILAKAVSSFM 119
Query: 120 DVLTQYSIECLV 131
D L +++I ++
Sbjct: 120 DTLDEFTIADVM 131
>gi|118579599|ref|YP_900849.1| BadM/Rrf2 family transcriptional regulator [Pelobacter propionicus
DSM 2379]
gi|118502309|gb|ABK98791.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter propionicus
DSM 2379]
Length = 134
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A D +S+IA A + + FL KI Q K G+V + RG
Sbjct: 2 MELTRKGEYAIRGIVYLASRPGDQVCLLSEIAAAVDVPQTFLAKIFQQFSKIGLVRSYRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ++IT+L+VV+A E C +C +C + V + +
Sbjct: 62 TGGGFMLGRAPEKITLLEVVEAVEGPVVPNRCVIGAG-ECDRSVACRVHPVWIEVQHEVR 120
Query: 120 DVLTQYSIECLV 131
+L + +++ L
Sbjct: 121 AILARVTLKELA 132
>gi|269791825|ref|YP_003316729.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269099460|gb|ACZ18447.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 146
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ ++T Y +R L ++ P +I++IAEA I FL IL L G VE++RGR
Sbjct: 6 VNQKTQYALRALYELSVQYRAGPVKIARIAEAQRIPRKFLEVILSELKAMGYVESLRGRE 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RP +I+I DV++ + +C + C L G C + +A A +V
Sbjct: 66 GGYVLARPPWEISIGDVIRDVQGPLSPVDCLIG-RGGCRLSGQCSFRPLWARAARALEEV 124
Query: 122 LTQYSIECLVR 132
+ + LV
Sbjct: 125 YDGTTFQDLVD 135
>gi|304386705|ref|ZP_07368978.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091]
gi|261391951|emb|CAX49413.1| putative HTH-type transcriptional regulator [Neisseria meningitidis
8013]
gi|304339220|gb|EFM05301.1| transcriptional repressor NsrR [Neisseria meningitidis ATCC 13091]
Length = 147
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 54/135 (40%), Positives = 81/135 (60%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL P D+I I VV+ E + EC S +C + SC LT +L A+ +FF
Sbjct: 61 GGGLRLAAPPDRINIGSVVRHL-EPMQLVECMGS-NNECLITPSCRLTGILGGAMKSFFT 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 YLDGFTLQDLLNKPT 133
>gi|88800419|ref|ZP_01115984.1| hypothetical protein MED297_07531 [Reinekea sp. MED297]
gi|88776866|gb|EAR08076.1| hypothetical protein MED297_07531 [Reinekea sp. MED297]
Length = 155
Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats.
Identities = 46/143 (32%), Positives = 80/143 (55%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T+ TDY +RVL+Y + ++P RI +AE+ IS+ L K++Q L G V+ RGR
Sbjct: 1 MNITRFTDYALRVLVYLNVDTEHPARIQDVAESYDISKNHLMKVVQVLNAQGYVKATRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA +I I ++V+ EE + ECF + C + +C + + A+ FF
Sbjct: 61 NGGIALSRPASEINIGELVRYFEEGSKLVECFGADNQ-CVITPACQIKQMFTGAMEQFFC 119
Query: 121 VLTQYSIECLV--RNRSSIKKIF 141
L Q+++ + + + ++
Sbjct: 120 HLDQFTLADMTVPSQQKLLAELL 142
>gi|163814492|ref|ZP_02205881.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759]
gi|158450127|gb|EDP27122.1| hypothetical protein COPEUT_00643 [Coprococcus eutactus ATCC 27759]
Length = 136
Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +RV+ AI H+ + +I + +S+ +L I++ L KA ++E G
Sbjct: 1 MVISSKGEYALRVMADLAINHDGRFIPLKEIVQKEELSQKYLESIMRMLSKANLIEAASG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + ++ T+ ++++ TE C + I C C + +
Sbjct: 61 HGGGYRLKKAPEEYTLWEILELTEGGLAPVACMKNSTITCDRSKQCYTLPIWQGLAELIQ 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ + RN
Sbjct: 121 EYFQGKTLADIARN 134
>gi|73542904|ref|YP_297424.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
JMP134]
gi|72120317|gb|AAZ62580.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
JMP134]
Length = 150
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +DY +R+LMY A + P I+++ + +S L K+ L K G + RG
Sbjct: 1 MQLTRFSDYALRLLMYVARADGSRPITIAEVGQQFEVSHHHLVKVAARLSKLGWITATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L ADQ+TI +++ E V +C C L G+C L L +A AF+
Sbjct: 61 RHGGLELGPQADQLTIGTILRELEGHKPVIDC---DDPPCALKGNCRLRRALDEAEQAFY 117
Query: 120 DVLTQYSIECL 130
L ++ +
Sbjct: 118 RSLDTVTLADV 128
>gi|325102989|ref|YP_004272643.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
gi|324971837|gb|ADY50821.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
Length = 144
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 5/140 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGIR L+ H D P IS IAE I + FL +IL L AG + + +G
Sbjct: 2 LSKKTKYGIRALIALGEHYDKEPVNISFIAETEKIPKKFLEQILLELRNAGFLYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + I ++ V++ T C + +C +CG+ R +A
Sbjct: 62 GGYSLLKNPKDINLVQVMRITGGPIAQLPCVSLNFYQRCEECKDEENCGIRDTFRDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+L++ +I L+ +
Sbjct: 122 TLKILSETTIADLIAKEKGL 141
>gi|294670388|ref|ZP_06735270.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291307852|gb|EFE49095.1| hypothetical protein NEIELOOT_02106 [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 149
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/135 (36%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT++TDY +RVL Y A +++ I+ IAE IS L K+ LVK G +++VRG+
Sbjct: 1 MYLTQQTDYALRVLTYAAANSEGLVNIATIAEVYGISRSHLMKVATALVKGGFLDSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R ++I I DVV+ E + EC + C L C L+++L +A AF
Sbjct: 61 GGGLRLSRSEEEIVIGDVVRHM-EPMKLVECMGADNR-CLLTSCCRLSNILNEAGQAFLA 118
Query: 121 VLTQYSIECLVRNRS 135
L ++++ L+ +
Sbjct: 119 HLDKFTLSDLINQPT 133
>gi|93006349|ref|YP_580786.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter
cryohalolentis K5]
gi|92394027|gb|ABE75302.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter
cryohalolentis K5]
Length = 181
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/181 (27%), Positives = 82/181 (45%), Gaps = 39/181 (21%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT +DY +R L+Y A + IS IA + IS+ L KI+Q L + G +++VR
Sbjct: 1 MRLTNYSDYALRSLIYLATKPEPTLLANISDIANSYHISKSHLTKIIQQLGQLGYIDSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-------------------- 98
G+ GG+RL I + +++K E F + ECF+++ +D
Sbjct: 61 GKNGGIRLAHAPKDINLGELIKKIEPDFALVECFSTNSLDSSIADINSAVINDEKNASAN 120
Query: 99 -----------------CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
C + C L VL +AL AF VL +Y++ ++ N+ + +
Sbjct: 121 DMSLKLIDETVSHIASGCIISPVCQLKQVLAEALTAFIAVLERYTLADIIENKDELAALL 180
Query: 142 N 142
+
Sbjct: 181 S 181
>gi|291280535|ref|YP_003497370.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans
SSM1]
gi|290755237|dbj|BAI81614.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans
SSM1]
Length = 142
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +T R+ Y IR L A+ P + +++E IS +L ++ L+KAGIV +VR
Sbjct: 1 MKVTTRSRYAIRALYALALAGGDKTPVSLKKVSEMESISMKYLERLFSNLMKAGIVNSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG +P ++IT+LDVV+ + +C C C + + N
Sbjct: 61 GIYGGYIFSKPLNEITLLDVVEVMDGVIKPVDCVEEEG--CDRSRDCSINWIWFDLKNII 118
Query: 119 FDVLTQYSIECLV 131
+ L++ + LV
Sbjct: 119 ENYLSKITFYDLV 131
>gi|298505456|gb|ADI84179.1| transcriptional regulator, Rrf2 family [Geobacter sulfurreducens
KN400]
Length = 153
Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 67/136 (49%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T Y ++ ++Y A D P I+ +A I + FL IL L AG++++ +G+
Sbjct: 2 ISKKTKYALKAMLYLAREQDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L +P +I++ +++ E +C + +C SCG+ V++ +A
Sbjct: 62 GGYYLAQPPREISMGRIIRILEGPLAPVQCVSETSYARCEECDDEWSCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRN 133
+L ++ ++
Sbjct: 122 MATILDGATLADVLER 137
>gi|299531825|ref|ZP_07045227.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
testosteroni S44]
gi|298720266|gb|EFI61221.1| transcriptional regulator, BadM/Rrf2 family protein [Comamonas
testosteroni S44]
Length = 153
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+LM+ A + IS++A+A ISE L K+ L G +ETVRG+
Sbjct: 1 MRLTLMTDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R QI I V++ E F + ECF + C L G C L +L+ AL++F
Sbjct: 61 GGGMRLAREPKQIHIGTVIRGLESDFTLVECFGNDNR-CTLTGDCRLAGMLQGALHSFMA 119
Query: 121 VLTQYSIECLV 131
L +++ L+
Sbjct: 120 HLDGFTLADLI 130
>gi|260576973|ref|ZP_05844954.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
gi|259020815|gb|EEW24130.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
Length = 157
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/141 (34%), Positives = 75/141 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +T+ RVLM CA++ R ++IA AC S L ++ L G +ETVRGR
Sbjct: 1 MRLTTKTNLAARVLMACAVNEGVTLRTAEIARACNASLNHLLLVVNALHTNGFIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RP Q+++ +V + E AECF CPL +C L S + +A+ AF+
Sbjct: 61 SGGLHLTRPPAQVSMGEVFRTFESGTPFAECFDPDTNTCPLSTTCRLRSYVARAVEAFYH 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
+ ++E LV+ + +
Sbjct: 121 EMDMVTLEDLVKGNCGLSGLL 141
>gi|293604765|ref|ZP_06687165.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC
43553]
gi|292816934|gb|EFF76015.1| transcriptional repressor NsrR [Achromobacter piechaudii ATCC
43553]
Length = 145
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 49/138 (35%), Positives = 76/138 (55%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+RVLM D P I +IA +S L K++ + + G + TVR
Sbjct: 1 MQLTRFTDFGLRVLMCLTQCRDRPSPVTIPEIAGRFEVSRNHLVKVVHFMSQRGWISTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+RL R A + D+++ E+ + +C C L G+C L VL + LNAF
Sbjct: 61 GKGGGLRLARDACAYRVGDLIRELEQQGPLIDCHE---PPCALDGACRLAGVLAQTLNAF 117
Query: 119 FDVLTQYSIECLVRNRSS 136
+D L Y++ LVR+ ++
Sbjct: 118 YDALNGYTLADLVRDPTA 135
>gi|257467708|ref|ZP_05631804.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
Length = 140
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R
Sbjct: 1 MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL + +IT+ + K +E V +C HK C +CG T + K +
Sbjct: 61 GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 119
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +L + ++ ++N+ I
Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140
>gi|221066727|ref|ZP_03542832.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
KF-1]
gi|220711750|gb|EED67118.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
KF-1]
Length = 154
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 50/140 (35%), Positives = 80/140 (57%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+LM+ A + IS+I++A ISE + K+ L + G ++TVRG+
Sbjct: 1 MRLTLMTDYALRLLMHVAQRPERLCTISEISQAYGISEAHMMKVTHQLAQQGWIKTVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL QI + VV+ E F + ECF + C L G C LT +L+ AL++F
Sbjct: 61 GGGMRLAHEPQQINLGAVVRGMEPDFALVECFTNDNR-CMLAGDCRLTGLLQGALHSFMA 119
Query: 121 VLTQYSIECLVRNRSSIKKI 140
L +++ L+ ++S ++
Sbjct: 120 HLDGFTLATLLIPQASANEL 139
>gi|52081231|ref|YP_080022.1| negative regulator of riboflavin kinase [Bacillus licheniformis
ATCC 14580]
gi|52786611|ref|YP_092440.1| YrzC [Bacillus licheniformis ATCC 14580]
gi|319644802|ref|ZP_07999035.1| YrzC protein [Bacillus sp. BT1B_CT2]
gi|52004442|gb|AAU24384.1| negative regulator of riboflavin kinase [Bacillus licheniformis
ATCC 14580]
gi|52349113|gb|AAU41747.1| YrzC [Bacillus licheniformis ATCC 14580]
gi|317392611|gb|EFV73405.1| YrzC protein [Bacillus sp. BT1B_CT2]
Length = 138
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNDLSEHYLEQLVSPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L IT D+++ E E + + + K +A
Sbjct: 61 AYGGYILGEEPAAITAGDIIRVLEGPISPVEVLENEEPAK--------RELWIKIRDAVK 112
Query: 120 DVLTQYSIECLV 131
+VL ++E L
Sbjct: 113 EVLDSTTLEDLA 124
>gi|56461491|ref|YP_156772.1| YjeB/RRF2 family transcriptional regulator [Idiomarina loihiensis
L2TR]
gi|56180501|gb|AAV83223.1| Predicted transcriptional regulator, YjeB/RRF2 family [Idiomarina
loihiensis L2TR]
Length = 150
Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K TDYG+RVLMY A D I +++ + L K++ L K G++ET RG
Sbjct: 1 MQLKKYTDYGLRVLMYLAAKEDTKRATIDELSGIFNVPRNHLNKVVHQLGKEGLIETRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG L I + V++ E + +C K +C + C L V+ + F+
Sbjct: 61 KNGGFLLAIEPADIRLDKVIRRLEGDEYWVDCH---KPECAIFPVCELKHVINQGKETFY 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
D L Y++ LV N + I++ +
Sbjct: 118 DFLAGYTLASLVSNDAQIREFWG 140
>gi|261415306|ref|YP_003248989.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|261371762|gb|ACX74507.1| transcriptional regulator, BadM/Rrf2 family [Fibrobacter
succinogenes subsp. succinogenes S85]
gi|302327324|gb|ADL26525.1| transcriptional regulator, Rrf2 family [Fibrobacter succinogenes
subsp. succinogenes S85]
Length = 146
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + Y IRV++ A + + + + +AE +SE +L IL LVK ++E RG
Sbjct: 1 MRESTKGRYAIRVIIDMAENGESEFHPLHNLAERQGLSEKYLEAILGVLVKNNVLEGARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L +PA ++T+ +++ E S EC A K C C + +
Sbjct: 61 KGGGYKLAKPAAELTVWEILSVIETSISPVECVADGKNGCDRADVCPTLPMWKDLAKIIK 120
Query: 120 DVLTQYSIECLVRNRSSI 137
D T +IE L R I
Sbjct: 121 DYFTGITIEQLARKAPKI 138
>gi|283850155|ref|ZP_06367444.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
gi|283574181|gb|EFC22152.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio sp.
FW1012B]
Length = 145
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +Y IR +++ ++H D P +IAEA I FL K+ Q L +AGI+ +G
Sbjct: 1 MRLTRAGEYAIRCVLHLSMHRDRPVITRKEIAEAMDIPAQFLGKVAQHLARAGIIAIRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+L +V+A + F+ +C + C C + V KA +
Sbjct: 61 AQGGYELVRRPEDITLLSLVEAIDGEIFLNDCISRP-ESCDRRKLCSVHRVWDKARSQLR 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L ++ L S
Sbjct: 120 ETLGSTTLAALAETESK 136
>gi|90406923|ref|ZP_01215114.1| Rrf2 family protein [Psychromonas sp. CNPT3]
gi|90311965|gb|EAS40059.1| Rrf2 family protein [Psychromonas sp. CNPT3]
Length = 158
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A+ + P ++ I+ IS +L ++ L K +V +VRG
Sbjct: 1 MKLTSKGRYAVTAMLDVALKEHNGPVPLADISMRQGISLSYLEQLFSKLRKNELVCSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + +I++ ++ A ES V +C C S+ +
Sbjct: 61 PGGGYKLGKLRSEISVAMIIAAVNESVDVRKCSGKEGCQ-EHGVKCLTHSLWEQLSLRIS 119
Query: 120 DVLTQYSIECLVRNRS 135
L ++E L+ +
Sbjct: 120 TFLDGITLEELMSSEH 135
>gi|144900519|emb|CAM77383.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 157
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 75/141 (53%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL++ + I++IAE IS+ L K++ L +AG +ETVRG+
Sbjct: 13 MRLTLHTDYALRVLVHVGLRGGELVTINEIAECHGISKNHLTKVVHQLGRAGFLETVRGK 72
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
GG+RL + + + V+ E+ F +A+C + D C + +C + ++AFF
Sbjct: 73 YGGIRLLVDPRTLRLGEFVRQVEDDFALAQCMRASNADSCRVSAACLARRAFGQGIDAFF 132
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L +++ ++ ++ +
Sbjct: 133 KALNVHTLADMIDAERALPPL 153
>gi|332969189|gb|EGK08221.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
kingae ATCC 23330]
Length = 149
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQSHAVKLNAISERQQISLSYLEQLFSKLRRAGLVESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ADQI I ++ A E+ C K +C C ++ +
Sbjct: 61 PGGGYVLGKSADQINISQIIAAAEDRLDATLCSG--KANCQSGAPCLTHNLWENLNHTID 118
Query: 120 DVLTQYSIECLVRNRSS 136
+ L+ ++ L+ +
Sbjct: 119 NYLSSVTLASLLEQQQP 135
>gi|148244681|ref|YP_001219375.1| Fe-S cluster-containing transcription factor [Candidatus
Vesicomyosocius okutanii HA]
gi|146326508|dbj|BAF61651.1| Fe-S cluster-containing transcription factor [Candidatus
Vesicomyosocius okutanii HA]
Length = 139
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A ++ P + I++ IS +L ++ L +A +V++VRG
Sbjct: 1 MQLTTKGRYAVTAILDLASNDTGKPITLDIISQRQNISLSYLEQLFAKLRRAELVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A I + +++A +E+ + C C C + +
Sbjct: 61 PGGGYLLDAKACDINLTQIIEAVDENIDLRRC--KGIKVCNNGRQCISHQLWCEVSEQIR 118
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L +++ ++ + +S K +
Sbjct: 119 TFLNGKTLQMVIDDHNSNKGV 139
>gi|144897308|emb|CAM74172.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 148
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ ++Y A H +D I+ IAEA I + FL IL L G + + +G+
Sbjct: 2 LSSKAKYGLKAMVYLARHADDGSVLIADIAEAESIPKKFLDAILLELKNRGYLSSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L +PA QI + D+V+ + +C + DC C + +V+ + +A
Sbjct: 62 GGYSLAKPAQQIMVGDIVRVLDGPLAPVQCVSRTAYRRCDDCRDEAGCAVRAVMGEVRDA 121
Query: 118 FFDVLTQYSIECLV 131
+L ++ +
Sbjct: 122 IAAILDNTTLADMA 135
>gi|157693157|ref|YP_001487619.1| transcriptional regulator [Bacillus pumilus SAFR-032]
gi|157681915|gb|ABV63059.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 139
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL A +V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E E + + + + +A
Sbjct: 61 AYGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLV 131
DVL ++E L
Sbjct: 113 DVLDNTTLEDLA 124
>gi|238022335|ref|ZP_04602761.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147]
gi|237866949|gb|EEP67991.1| hypothetical protein GCWU000324_02242 [Kingella oralis ATCC 51147]
Length = 148
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 68/140 (48%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE+VRG
Sbjct: 1 MRLTTKGRFAVTAMVDLAMNAQNNAVKLNAISERQKISLSYLEQLFSKLRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +PA QI I ++ A E+ +C K DC C ++ +
Sbjct: 61 PGGGYVLGKPAGQINIAQIITAAEDRLDATQCSG--KADCHGGAPCITHNLWESLNHTIH 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L+ ++ L+ + K+
Sbjct: 119 NHLSSVTLAHLIAQDQTPKE 138
>gi|229918428|ref|YP_002887074.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium sp.
AT1b]
gi|229469857|gb|ACQ71629.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium sp.
AT1b]
Length = 135
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A D P + +IA + E +L +++ PL G+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIALARETDNKPLSLKKIAARHELPEHYLEQLIGPLRNGGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +P +++T ++++ E + E + + K A
Sbjct: 61 AYGGYQLVKPPEEVTAGEIIRLLEGPLAIVEDSEADDA--------VKRKLWDKIKEAID 112
Query: 120 DVLTQYSIECLVRNRSS 136
VL + ++ L S
Sbjct: 113 TVLDETTLADLAEEESD 129
>gi|332295070|ref|YP_004436993.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium
narugense DSM 14796]
gi|332178173|gb|AEE13862.1| transcriptional regulator, BadM/Rrf2 family [Thermodesulfobium
narugense DSM 14796]
Length = 141
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 60/134 (44%), Gaps = 2/134 (1%)
Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ +T YG+R L A Y Q+A+ IS +L ++L L GIVE+ +G
Sbjct: 3 KLSTKTRYGLRALCQLAQVKKGYTIPAHQLAKDQEISLSYLEQVLNVLKHHGIVESFKGP 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L +I + DV++ E + +C A C C ++ +K N
Sbjct: 63 GGGYKLNVDPKKIILKDVIEILEGPVLITDCSADPSK-CHRAEDCLTRALWQKIGNQVNS 121
Query: 121 VLTQYSIECLVRNR 134
L + ++ LV+
Sbjct: 122 FLGKITLNDLVKKN 135
>gi|59712922|ref|YP_205698.1| transcriptional repressor NsrR [Vibrio fischeri ES114]
gi|197336033|ref|YP_002157111.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11]
gi|75353317|sp|Q5E2D6|NSRR_VIBF1 RecName: Full=HTH-type transcriptional repressor nsrR
gi|226737681|sp|B5FBQ6|NSRR_VIBFM RecName: Full=HTH-type transcriptional repressor nsrR
gi|59481023|gb|AAW86810.1| nitrite-responsive HTH-type transcriptional repressor NsrR [Vibrio
fischeri ES114]
gi|197317523|gb|ACH66970.1| HTH-type transcriptional regulator NsrR [Vibrio fischeri MJ11]
Length = 141
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 76/142 (53%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y ++ I+ + E +S + KI+ L + G V+T+RG
Sbjct: 1 MQLTNFTDFGLRALIYLGSLPEGELTSITVVTETFDVSRNHMVKIINKLGQEGYVKTIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L +PADQI I DV++A E V C C + +C L L KA AF
Sbjct: 61 KNGGICLGKPADQIIIGDVIRAI-EPLQVVNCAPEF---CHITPACRLKGALAKAKQAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
D L +++I+ ++ + S + +
Sbjct: 117 DELDKHTIQDMLTDNSELLILL 138
>gi|23015553|ref|ZP_00055325.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 151
Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ ++Y A H P I+ IA++ I + FL IL + ++ + +G+
Sbjct: 4 LSSKAKYGLKAMVYLARHEGLGPVLIADIAQSERIPKKFLDAILLEMKNQKLLSSKKGKG 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I + D+V+ + C + DC +C + +V++ +A
Sbjct: 64 GGYTLAMPAARIMVGDIVRVLDGPLAPVSCVSRSAYRACDDCTDEAACTIRAVMQDVRDA 123
Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
+L ++ + R + +
Sbjct: 124 IAAILDNTTLADMANRRGRPEPVL 147
>gi|319405537|emb|CBI79156.1| conserved hypothetical protein [Bartonella sp. AR 15-3]
Length = 151
Score = 114 bits (285), Expect = 6e-24, Method: Composition-based stats.
Identities = 73/130 (56%), Positives = 101/130 (77%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA A +SELFLFKILQPLV+AG ++TVRGR
Sbjct: 1 MRLTKQTNYALRMLMYCASNQGALSRIPEIARAYAVSELFLFKILQPLVEAGFMKTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L +PA +I++ DV+K TE++F++AECF + +CPL+ CGL VL+KAL++FFD
Sbjct: 61 NGGVKLAKPATEISVADVIKITEDNFYMAECFDNKLSNCPLINFCGLNIVLKKALDSFFD 120
Query: 121 VLTQYSIECL 130
VL+ SI L
Sbjct: 121 VLSLTSIADL 130
>gi|291279503|ref|YP_003496338.1| BadM/Rrf2 family transcriptional regulator [Deferribacter
desulfuricans SSM1]
gi|290754205|dbj|BAI80582.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter
desulfuricans SSM1]
Length = 134
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 45/135 (33%), Positives = 79/135 (58%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK DY +RV+++ A + D S+++E C I + FL KILQ L K G++++ +G
Sbjct: 1 MKLTKAADYALRVMLFIASSDKDKTFMRSELSEICDIPDSFLGKILQTLAKNGLLDSSKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG +L + ++IT+ D+V A + ++ EC ++ C C + +VL K N F
Sbjct: 61 KKGGFKLSKSPEEITLYDIVTAIDGDVYINECIDKPEV-CKRSDICKINNVLAKIKNNFV 119
Query: 120 DVLTQYSIECLVRNR 134
L Y+++ L+ N+
Sbjct: 120 KELKNYTLKDLLTNK 134
>gi|328948431|ref|YP_004365768.1| BadM/Rrf2 family transcriptional regulator [Treponema
succinifaciens DSM 2489]
gi|328448755|gb|AEB14471.1| transcriptional regulator, BadM/Rrf2 family [Treponema
succinifaciens DSM 2489]
Length = 142
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R Y +RV++ H D ++ IAE +S +L I+ LVKAG+VE +RG
Sbjct: 1 MLISTRGRYALRVIIELCSHGKDEFVPLNVIAENQDVSLKYLESIVALLVKAGLVEGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG RL + AD+ ++ +++K TE + C + CP C + K
Sbjct: 61 KKGGYRLTKDADEYSVGEILKLTEGTLAPVTCLEENAETCPRSAECKTLPMWEKLDTIIS 120
Query: 120 DVLTQYSIECLVRNRS 135
+ L I L++ S
Sbjct: 121 NYLYSVKISDLLKPES 136
>gi|294501358|ref|YP_003565058.1| transcriptional regulator of cysteine biosynthesis [Bacillus
megaterium QM B1551]
gi|295706705|ref|YP_003599780.1| transcriptional regulator of cysteine biosynthesis [Bacillus
megaterium DSM 319]
gi|294351295|gb|ADE71624.1| transcriptional regulator of cysteine biosynthesis [Bacillus
megaterium QM B1551]
gi|294804364|gb|ADF41430.1| transcriptional regulator of cysteine biosynthesis [Bacillus
megaterium DSM 319]
Length = 138
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + P + IA+ +SE +L +++ PL AG+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIELAKRFGEGPISLKTIAQTHDLSEHYLEQLISPLRNAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L IT D++ E E + + + +A
Sbjct: 61 AYGGYILAHEPANITSGDIISVLEGPISPVEGIEDEEPAK--------RELWIRIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL ++E L +
Sbjct: 113 EVLDSTTLEDLANHSDD 129
>gi|253701613|ref|YP_003022802.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacter sp. M21]
gi|251776463|gb|ACT19044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
Length = 136
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT++ +Y IR ++Y A IS+IA A + + FL KI Q K G+V + RG
Sbjct: 2 MELTRKGEYAIRGIIYLAQQPPGRVSLISEIAAAAEVPQTFLAKIFQSFAKLGLVSSSRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA QIT+ +VV+A E C C G C + V ++
Sbjct: 62 TGGGFVLGRPASQITLREVVEAVEGPILPNRCLLGS--ACDRGGPCRVHGVWKQVQTEVV 119
Query: 120 DVLTQYSIECLVRN 133
+L +I L+
Sbjct: 120 HILDGVTI-DLLAR 132
>gi|119476390|ref|ZP_01616741.1| iron-sulfur cluster assembly transcription factor IscR [marine
gamma proteobacterium HTCC2143]
gi|119450254|gb|EAW31489.1| iron-sulfur cluster assembly transcription factor IscR [marine
gamma proteobacterium HTCC2143]
Length = 174
Score = 113 bits (284), Expect = 6e-24, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ AIH P ++ I+ IS +L ++ L + +V +VRG
Sbjct: 17 MRLTTKGRYAVTAMLDLAIHVGAGPISLADISSRQGISLSYLEQLFAKLRRGELVSSVRG 76
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I + +V A E C +C +
Sbjct: 77 PGGGYLLSRGGADIFVSQIVDAVNEKIDATGCGGGGDC--QDGETCLTHHLWCDLSEQIH 134
Query: 120 DVLTQYSIECLVRNRS 135
L S+ LV R
Sbjct: 135 SFLGGISLASLVEKRE 150
>gi|319942818|ref|ZP_08017119.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
wadsworthensis 3_1_45B]
gi|319803585|gb|EFW00546.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
wadsworthensis 3_1_45B]
Length = 161
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT + + + ++ A+ +D P I+Q+AE IS +L +I L +AG+VE+
Sbjct: 1 MKLTTKGRFAVTAMVDIAMRARESDAPVPIAQVAERQKISLAYLEQIFCRLRRAGLVEST 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG +L PA QITI +V A +E+ +C C +C + + +
Sbjct: 61 RGPAGGYKLSEPASQITIDRIVLAVDENMDTTQCRGEG--TCLGGAACLTHHLWEELNSV 118
Query: 118 FFDVLTQYSIECLV 131
L S+ECL+
Sbjct: 119 IESFLASRSLECLI 132
>gi|77919457|ref|YP_357272.1| putative Fe-S cluster regulator protein [Pelobacter carbinolicus
DSM 2380]
gi|77545540|gb|ABA89102.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
carbinolicus DSM 2380]
Length = 147
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y +R ++ ++ + D P IA+ IS FL +IL L + IV +VRG
Sbjct: 1 MRLSTKAQYAVRAMVRLSLENADTPVSSKAIADLEGISVTFLEQILAKLRRGKIVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA++I + +++++ EE+ C +C C V +
Sbjct: 61 PGGGFVLARPAEEIRVDEIIESVEEALMPVACM-DETGECQCEELCFTHMVWAGLGHRIK 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L +++ L R S I++
Sbjct: 120 KFLASITLDELSREASVIRQ 139
>gi|88812644|ref|ZP_01127891.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231]
gi|88790060|gb|EAR21180.1| hypothetical protein NB231_00625 [Nitrococcus mobilis Nb-231]
Length = 145
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 1/127 (0%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MY ++ + + IS+IAE IS L K++ L + G VETVRG+ GG+RL I
Sbjct: 1 MYLSLKENELSTISEIAERYAISRNHLMKVVYELGRLGYVETVRGKHGGMRLRHSPASIN 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ +VV+ TE + ECF+S C L SC L VLR+AL AF VL +YS+ L+ +
Sbjct: 61 LGEVVRRTENDMALVECFSSQNY-CRLTPSCVLHGVLREALQAFLAVLDRYSLADLLEPK 119
Query: 135 SSIKKIF 141
+ +
Sbjct: 120 QKLANLL 126
>gi|317484710|ref|ZP_07943611.1| transcriptional regulator [Bilophila wadsworthia 3_1_6]
gi|316924066|gb|EFV45251.1| transcriptional regulator [Bilophila wadsworthia 3_1_6]
Length = 168
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + RT YG+R L+ A ++++IA +S +L +I++ L AGI+ + RG
Sbjct: 1 MRYSTRTRYGLRFLINLAGRPAGACVQLAEIAREEGVSVKYLEQIVRVLRPAGILRSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + D I + +V + E EC K C G C R+ +
Sbjct: 61 AKGGYALAKSPDAIRMDEVFERLEGHISPVECLHGAK-SCEREGVCPTRWFWRELDDHMR 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
L ++ V ++K
Sbjct: 120 MFLKGMTLARFVERERALK 138
>gi|317128228|ref|YP_004094510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Bacillus cellulosilyticus DSM 2522]
gi|315473176|gb|ADU29779.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
cellulosilyticus DSM 2522]
Length = 139
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + + P + IA +SE +L +++ PL A +V++VRG
Sbjct: 1 MKISTKGRYGLTIMMALAKKYGEGPISLKSIAIDHDLSEHYLEQLIAPLRNATLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +QIT D+++ E E + + K +A
Sbjct: 61 AYGGYMLSKSPEQITAGDIIRVLEGPITPVEVVDDEEPAK--------RDLWIKIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
DVL ++E L
Sbjct: 113 DVLDSTTLEDLANYEDK 129
>gi|313902381|ref|ZP_07835784.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
subterraneus DSM 13965]
gi|313467312|gb|EFR62823.1| transcriptional regulator, BadM/Rrf2 family [Thermaerobacter
subterraneus DSM 13965]
Length = 141
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + A + P + ++A+A + E +L +++ PL K G+V++VRG
Sbjct: 1 MQLSTRGRYGVRAMYELARRYGQGPVPLREVADAQQLPENYLEQLMAPLRKGGLVQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R QIT+ D+V+ + V + A
Sbjct: 61 AQGGYVLARDPAQITVADIVRLLDGPI------GPETDQEATGTPSVADPVWEEVRRAIT 114
Query: 120 DVLTQYSIECLVRNRSSIKK 139
VL ++ L R ++
Sbjct: 115 GVLEGTTLADLCRQAEERQR 134
>gi|294792716|ref|ZP_06757863.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 6_1_27]
gi|294794467|ref|ZP_06759603.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 3_1_44]
gi|294454797|gb|EFG23170.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 3_1_44]
gi|294456615|gb|EFG24978.1| iron-sulfur cluster assembly transcription factor IscR [Veillonella
sp. 6_1_27]
Length = 149
Score = 113 bits (284), Expect = 7e-24, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + VL+ D P + +AE ISE +L I+ L A +V+++RG
Sbjct: 1 MRISTKGRYALMVLIDLVEQGQDKPVSLRSVAERQGISEKYLEGIVARLGAANLVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + + TI++++ ATEES + ++ N
Sbjct: 61 KYGGYRLSKSPKEYTIIEILLATEESMAIISTLDEGVSTDTVINE-RTVGFWAGLQNYIH 119
Query: 120 DVLTQYSIECLVR 132
D L +++ ++
Sbjct: 120 DYLENVTLQDVID 132
>gi|296135927|ref|YP_003643169.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
K12]
gi|295796049|gb|ADG30839.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
K12]
Length = 154
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 64/129 (49%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TD+G+R LM A + D ++A+ IS L K+LQ L G V+ RG
Sbjct: 1 MKLTQFTDFGLRALMVLAENPDQSLNSKELAKILDISREHLVKVLQRLAAGGYVQNQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL + A +I + +VV+ E+ + EC C L C L +L A AF+
Sbjct: 61 NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120
Query: 121 VLTQYSIEC 129
L ++
Sbjct: 121 RLNTSTLAD 129
>gi|254796684|ref|YP_003081520.1| Rrf2/aminotransferase, class V family protein [Neorickettsia
risticii str. Illinois]
gi|254589924|gb|ACT69286.1| Rrf2/aminotransferase, class V family protein [Neorickettsia
risticii str. Illinois]
Length = 522
Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT +T Y I + A+H+ + S+IA ISE FL IL PL K GI+E++ G
Sbjct: 2 LTAKTRYAIVASIDIALHSKGRKYVKTSEIASRQKISEKFLEVILPPLKKQGILESLLGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFF 119
GG RL + D I ++ ++KA ++ + C + C C ++ F
Sbjct: 62 GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 121
Query: 120 DVLTQYSIECLVRN 133
+ +++ ++ +
Sbjct: 122 NFFESVTLQDIISD 135
>gi|167465258|ref|ZP_02330347.1| possible transcriptional regulator [Paenibacillus larvae subsp.
larvae BRL-230010]
Length = 139
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA+QIT +++ E + + + ++
Sbjct: 61 AYGGYILSRPAEQITTGQIIRVLEGPISPVDFEEEDDPAK--------RDLWIRIRDSIA 112
Query: 120 DVLTQYSIECLVRNRSS 136
VL ++ L+
Sbjct: 113 QVLDSTTLASLISYEDE 129
>gi|221194677|ref|ZP_03567734.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
49626]
gi|221185581|gb|EEE17971.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
49626]
Length = 142
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + Y +R + A+H D + ++E IS +L +++ + KAG VE++RG+ G
Sbjct: 5 FSTKGMYALRAMADLAVH-DGWISLGDVSERQHISRKYLEQVISLMHKAGYVESLRGKGG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
G RL R ++ T+ ++++ATE + A C CP +GSC ++ R
Sbjct: 64 GYRLTRKPEEYTLGEILRATEGNLAPASCLNCTNETLCPQMGSCTTVNIWRDLGKMTSSF 123
Query: 122 LTQYSIECLVRNRSSIKK 139
L ++ + + +I+
Sbjct: 124 LDSKTLADIAWHEGNIQA 141
>gi|317062001|ref|ZP_07926486.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
gi|313687677|gb|EFS24512.1| RRF2 family protein [Fusobacterium ulcerans ATCC 49185]
Length = 152
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 68/141 (48%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R
Sbjct: 13 MKISTKVRYGLRALAYIAEKSGEEKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 72
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL + +IT+ + K +E V +C HK C +CG T + K +
Sbjct: 73 GPNGGYRLAKEPTEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGTTCIWSKLDS 131
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +L + ++ ++N+ I
Sbjct: 132 AMTKILKETTLNEFIKNKDMI 152
>gi|253578507|ref|ZP_04855779.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850825|gb|EES78783.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 158
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG++ L+ +H++ + IAE IS +L +++ L KAG+V++ RG
Sbjct: 1 MKLSTRARYGLKALIDLGLHSENEAISLQSIAERQDISTSYLEQLMAMLKKAGLVKSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG +L +PAD+I++ +V++ E S A C + C C V ++ ++
Sbjct: 61 AYGGYQLGKPADEISVGEVLRVLEGSLEAAACPGIENDGTCHGSDVCVAKLVWKRINDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ + + L+ + +
Sbjct: 121 TNAVDTLMLGQLIEESRRVHE 141
>gi|39996447|ref|NP_952398.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
gi|39983327|gb|AAR34721.1| Rrf2 family protein [Geobacter sulfurreducens PCA]
Length = 153
Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T Y ++ ++Y A D P I+ +A I + FL IL L AG++++ +G+
Sbjct: 2 ISKKTKYALKAMLYLARERDKGPILIADLARDERIPKKFLELILLALKNAGVLQSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L + +I++ +++ E +C + +C SCG+ V++ +A
Sbjct: 62 GGYYLAQSPREISMGRIIRILEGPLAPVQCVSETSYSRCEECDDEWSCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRN 133
+L ++ ++
Sbjct: 122 MATILDGATLADVLER 137
>gi|295094646|emb|CBK83737.1| rrf2 family protein (putative transcriptional regulator)
[Coprococcus sp. ART55/1]
Length = 144
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 69/136 (50%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + Y +R+++ +I++ + +A C +S+ +L ++ L+KAG + +VRG
Sbjct: 1 MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL PA++IT+ V++A E + D +V + + V +A +
Sbjct: 61 RGGYRLNMPAEEITVGMVLRAIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLESAINN 120
Query: 121 VLTQYSIECLVRNRSS 136
VL +I L R S
Sbjct: 121 VLDNKTIADLTREYSD 136
>gi|197118861|ref|YP_002139288.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
gi|197088221|gb|ACH39492.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
Length = 153
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T YG++ L+Y A D P I+ +A + + FL IL L GI+++ +G+
Sbjct: 2 ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L R +IT ++ E C + +C +CG+ V++ +A
Sbjct: 62 GGYFLGRHPGKITFGQAIRVMEGPLAPVPCVSETAYAKCTECENELTCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRN 133
+L ++ ++
Sbjct: 122 MAVILDGTTLADVLEK 137
>gi|326790786|ref|YP_004308607.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Clostridium lentocellum DSM 5427]
gi|326541550|gb|ADZ83409.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
lentocellum DSM 5427]
Length = 151
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A+H+ + IA+ +S ++ ++ L KAGIV++++G
Sbjct: 1 MKISTKARYGLRALVDLAVHSSGDQVPLISIAQRQELSANYMEQVFSSLKKAGIVKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA---ECFASHKIDCPLVGSCGLTSVLRKALN 116
+GG L + + IT+ +V++A E + E + + C V K
Sbjct: 61 SQGGYILAKRSCDITVGEVIRAIEGEILIVEEEEARDDASLIYNSMKQCLQEQVWSKITE 120
Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
+ V+ ++E L+++ + +
Sbjct: 121 SICQVIDHITLEDLMKDYEKLNQ 143
>gi|268317559|ref|YP_003291278.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
DSM 4252]
gi|262335093|gb|ACY48890.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
DSM 4252]
Length = 142
Score = 113 bits (283), Expect = 9e-24, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ +YG+R ++Y A +++D I +I E IS FL KI Q L +AG+++++RG
Sbjct: 2 FSRACEYGLRAVLYLASLNHDGYVSIREIGERLNISVPFLTKIFQKLTQAGLMQSLRGPS 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GGV R ++IT+ DV+ A + EC C C L ++ N ++
Sbjct: 62 GGVMFARSPEEITLFDVIVAIDGPDLFTECVLGL-PGCGEATPCPLHDHWKEVRNPIRNL 120
Query: 122 LTQYSIECLVRNRSSIK 138
++ + R +
Sbjct: 121 FASTTLADMARRMQEAR 137
>gi|330991657|ref|ZP_08315608.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329761676|gb|EGG78169.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 153
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 2/131 (1%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TDY +R L+Y +H D I +IA+A ISE L K++ L + G+++ RGR GG+ L
Sbjct: 3 TDYALRTLLYMGLHADRRVSIHEIADAYDISENHLVKVIHRLSRLGLIDARRGRGGGLVL 62
Query: 67 CRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ I I DVV+ TE+ + C C L C L L +AL+AF VL +
Sbjct: 63 AHAPEDIRIGDVVRKTEDDMRLVSCEPANPEGAGCILSDMCKLRGALAQALDAFMKVLDE 122
Query: 125 YSIECLVRNRS 135
++ L+ +
Sbjct: 123 TTLADLLPDHD 133
>gi|218887633|ref|YP_002436954.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758587|gb|ACL09486.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 264
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + YG R+++ A H+ P + +A +S+ +L KI + L +AG++ + RG
Sbjct: 1 MRLLTNSRYGTRMMLDIAQHSRLGPVLMRDVARRLDVSQKYLEKISRSLKEAGLLTSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R D I++ DVV+ E + C +C C V ++ A F
Sbjct: 61 PSGGHRLGRAPDDISVGDVVRVLEGGAEMVGCGRDE-ENCTHAPGCLTRMVWKECSRAMF 119
Query: 120 DVLTQYSIECLVR 132
L + L+R
Sbjct: 120 ARLDAITFGELLR 132
>gi|78355271|ref|YP_386720.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78217676|gb|ABB37025.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 199
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y R+L+ H D P + +A+ IS F+ K+++PL +AG+VE+VRG
Sbjct: 1 MRISASSHYASRILVMLTRHADEAPIPAAALADRSGISIKFVEKLIRPLKQAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +QI++ DVV+A E + C + C SC + A
Sbjct: 61 ATGGHMLAMRPEQISLGDVVRAMEGGIDLTHCCDDPER-CRSKESCRTRQMWSGVSRALE 119
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ L+ + +
Sbjct: 120 RTLDAITLLDLLNDPAP 136
>gi|160903152|ref|YP_001568733.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95]
gi|160360796|gb|ABX32410.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis
SJ95]
Length = 156
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M LT ++ Y +R L A+ IS+++E I + FL KI L AGIV++
Sbjct: 1 MSLTVKSSYALRALFELAVLAEDEGKEKVPISELSERQNIPKDFLEKIFIELRDAGIVKS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
VRG+ GG L + + + ++++ ++ +C C L C + V ++ N
Sbjct: 61 VRGKFGGYALAKNPKDLRLSEIIQVLDKPLQSFDCIVGE---CSLEIECAVEFVWKRVNN 117
Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
+ L++ +++ ++ I KI
Sbjct: 118 SIMLELSKMTLQDIIDYGRKIAKI 141
>gi|302671823|ref|YP_003831783.1| Rrf2 family transcriptional regulator [Butyrivibrio proteoclasticus
B316]
gi|302396296|gb|ADL35201.1| transcriptional regulator Rrf2 family [Butyrivibrio proteoclasticus
B316]
Length = 131
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 58/130 (44%), Gaps = 1/130 (0%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ ++ Y +R+L+ A +D + IAE IS+ +L I + LVK G++ G+
Sbjct: 2 FSTKSRYALRILIDLAQQKSDDFIPLKDIAERQDISKKYLEIIAKDLVKGGLIRGASGKH 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L R + ++ +++ E +F C + +CP G C S+ + +
Sbjct: 62 GGYMLTRAPEDYSVGEIIDHMEGTFAPVVCLEENAGECPRSGVCKTISMWTEFYELERNF 121
Query: 122 LTQYSIECLV 131
+ L+
Sbjct: 122 FYGKKLSDLL 131
>gi|38637899|ref|NP_942873.1| hypothetical protein PHG235 [Ralstonia eutropha H16]
gi|32527237|gb|AAP85987.1| conserved hypothetical protein [Ralstonia eutropha H16]
Length = 148
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R+L+Y A H + +IA+A IS L K+ L + G + TVRGR
Sbjct: 1 MRLTTMTDYALRLLIYVARHPERMCTNDEIAQAYGISRAHLVKVTHKLSRQGWIATVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L I + DVV++ E F + A L V+ A +F
Sbjct: 61 GGGMQLSSGPGSINLGDVVRSVEPDFDLVAGLADGSAR-KFASDEHLCRVMDGARWSFLQ 119
Query: 121 VLTQYSIECLV 131
L +++ L+
Sbjct: 120 YLESFTLADLL 130
>gi|194291062|ref|YP_002006969.1| hth transcriptional regulator; upf0074 [Cupriavidus taiwanensis LMG
19424]
gi|193224897|emb|CAQ70908.1| putative HTH transcriptional regulator; UPF0074 [Cupriavidus
taiwanensis LMG 19424]
Length = 150
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +DY +R+LMY A + P I+++ + IS L K+ L K G V RG
Sbjct: 1 MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWVSATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG++L A+++TI +++ E V +C C L G+C L L A AF+
Sbjct: 61 RHGGLQLGPGAERLTIGTILRELEGHRPVIDC---DNPPCALHGNCHLKRALDVAEQAFY 117
Query: 120 DVLTQYSIECL 130
L ++ +
Sbjct: 118 RALDDVTLADV 128
>gi|291619084|ref|YP_003521826.1| YjeB [Pantoea ananatis LMG 20103]
gi|291154114|gb|ADD78698.1| YjeB [Pantoea ananatis LMG 20103]
gi|327395416|dbj|BAK12838.1| transcriptional regulator YjeB [Pantoea ananatis AJ13355]
Length = 152
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 7/141 (4%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT TDYG+R L+Y A + I+++ + +S + KI+ L +AG V +RG+
Sbjct: 7 QLTSFTDYGLRALIYMATLPEGRLTNITEVTDTYGVSRNHMVKIINQLSRAGFVSAIRGK 66
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL A I I +VV+ E + +C +C + +C L L A+ F
Sbjct: 67 NGGIRLGMSARDIVIGEVVRKM-EPLQLVDCS-----NCSIAPACRLKKALHDAVQLFLQ 120
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + + +I
Sbjct: 121 ELDGYTLADLVEGNTPLYEII 141
>gi|226311480|ref|YP_002771374.1| transcriptional regulator of cysteine metabolism [Brevibacillus
brevis NBRC 100599]
gi|226094428|dbj|BAH42870.1| transcriptional regulator of cysteine metabolism [Brevibacillus
brevis NBRC 100599]
Length = 139
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELANRCGEGPTSLRSIAQKHDLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + D+I+ DV++ E E + + ++
Sbjct: 61 AYGGYVLAKQPDEISAGDVIRVLEGPISPVEFAEEEDPAK--------RFLWLRIRDSIS 112
Query: 120 DVLTQYSIECLV 131
VL S++ L+
Sbjct: 113 SVLDSTSLQDLI 124
>gi|220904115|ref|YP_002479427.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868414|gb|ACL48749.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 138
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ +T Y R+L+Y A + + P S +A IS F+ +IL+ L AGI +VRG
Sbjct: 1 MKLSAKTRYAARILLYLAKNGLEKPVSSSMLASQTGISSQFIEQILRQLRLAGITGSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +++T +V E ++ C C +C + +
Sbjct: 61 AKGGHVLLRKPEELTFGCIVNLMEGGIELSGCLEKPGH-CSRFDACEVRKAWESLQSTLD 119
Query: 120 DVLTQYSIECLVRNRSSI 137
V ++ L+ + +
Sbjct: 120 GVFESITLRDLMHDDHIL 137
>gi|294668749|ref|ZP_06733842.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
elongata subsp. glycolytica ATCC 29315]
gi|291309266|gb|EFE50509.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
elongata subsp. glycolytica ATCC 29315]
Length = 147
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + +++ I+E IS +L ++ L +A +V+++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQNGAVKLNDISERQNISLSYLEQLFGKLRRAKLVDSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L AD+I+I ++ A E+ C + K +C C +
Sbjct: 61 PGGGYVLAAAADEISIAQIITAAEDRLDATLCSS--KANCHNGAPCLTHDLWENLNRTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
L+ +++ ++ +
Sbjct: 119 QYLSSVTLQTVLNQKD 134
>gi|149197247|ref|ZP_01874299.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155]
gi|149139793|gb|EDM28194.1| Rrf2 family protein [Lentisphaera araneosa HTCC2155]
Length = 132
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 73/132 (55%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L +TDY +R+L++ A + + ++++E I++ + +I+ L K G + RGR
Sbjct: 1 MRLNLKTDYALRILLHAAKNKEKLITSTEVSERYNITQANVTQIVNALKKKGYLNVKRGR 60
Query: 61 R-GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P +++ I +++K E + +CF + + CP++ SC L ++ LNAF
Sbjct: 61 YGGGFTLSDPPEEMRIGNIIKDIEPDLDLVQCFNNERNTCPVIDSCKLAGLMYSGLNAFL 120
Query: 120 DVLTQYSIECLV 131
+ + + ++ ++
Sbjct: 121 EKMNEQTLADII 132
>gi|209696175|ref|YP_002264105.1| transcriptional repressor NsrR [Aliivibrio salmonicida LFI1238]
gi|226736212|sp|B6EMP9|NSRR_ALISL RecName: Full=HTH-type transcriptional repressor nsrR
gi|208010128|emb|CAQ80453.1| putative transcriptional regulator [Aliivibrio salmonicida LFI1238]
Length = 141
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/142 (33%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + I+ + E +S + KI+ L + G ++TVRG
Sbjct: 1 MQLTNFTDFGLRALIYLASLPKGELTSITVVTETFDVSRNHMVKIINKLGQEGFIKTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L RPADQI I +V+++ E F + C C + +C L + L KA AF
Sbjct: 61 KNGGICLGRPADQIIIGEVIRSI-EPFNIVNCAPEF---CHITPACRLKTALAKAKQAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
D L Q++I+ ++ + + +
Sbjct: 117 DELDQHTIQDMLTENNELLILL 138
>gi|168183029|ref|ZP_02617693.1| rrf2 family protein [Clostridium botulinum Bf]
gi|237794464|ref|YP_002862016.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
gi|182673737|gb|EDT85698.1| rrf2 family protein [Clostridium botulinum Bf]
gi|229263280|gb|ACQ54313.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
Length = 145
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G
Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEETVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT ++++A E V E + + + T++ + +
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVELNDDYLNN--RMEKSIKTNLWDRINESIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++E LV
Sbjct: 119 KVVDSITLEDLVEAYKK 135
>gi|77918038|ref|YP_355853.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
gi|77544121|gb|ABA87683.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
carbinolicus DSM 2380]
Length = 154
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ T+Y IR +++ A I I+ FL KILQPL+K GIV + RG
Sbjct: 1 MIITRATEYAIRAVLFMATQPRGETVLKKDICREQEITPAFLTKILQPLIKQGIVGSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + IT+LDV+KA E ++ C A +C +C + V R+A
Sbjct: 61 IGGGFYLAKDPADITLLDVIKAEEGPIYLNLCLAEE-TNCNREPTCPVNRVWREARTQLL 119
Query: 120 DVLTQYSIECLVR 132
VL +YS L R
Sbjct: 120 AVLDRYSFADLCR 132
>gi|87310930|ref|ZP_01093056.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM
3645]
gi|87286445|gb|EAQ78353.1| hypothetical protein DSM3645_18491 [Blastopirellula marina DSM
3645]
Length = 138
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +TDY +R LM+ A +D ++ +A+ IS + K++ L K G V ++RG
Sbjct: 1 MKLTTQTDYALRTLMFLATRSDR-ANVANVAQLFGISVHHVAKVVNSLAKYGYVRSIRGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R +I + +VV+ E S + +C + I C + C L VL +A
Sbjct: 60 GGGIELARQPREIRLGEVVERFEGSTHLLDCIDTEDI-CAIQSFCKLKGVLAEAERVQRA 118
Query: 121 VLTQYSIECLVRNRSSIKKI 140
L ++ + ++ +
Sbjct: 119 YLDSVTLADVAPTSRQLQLL 138
>gi|239907465|ref|YP_002954206.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
gi|239797331|dbj|BAH76320.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
Length = 151
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +Y IR ++Y A+H D +IAEA I FL K+ Q L KAG++ +G
Sbjct: 1 MRLTRAGEYAIRCVLYLAMHQDRTLIGRKEIAEAMDIPAQFLGKVAQQLAKAGVISIRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT+L V++A + F+ +C C C + +V A
Sbjct: 61 SLGGYELARRPQDITLLAVIEAIDGEIFLNDCIQRPG-SCDRQAICSVHNVWDTARRQLR 119
Query: 120 DVLTQYSIECLVR 132
D L ++ L
Sbjct: 120 DTLGSTTLAELAA 132
>gi|83954868|ref|ZP_00963546.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1]
gi|83840594|gb|EAP79766.1| hypothetical protein NAS141_00315 [Sulfitobacter sp. NAS-14.1]
Length = 156
Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats.
Identities = 49/137 (35%), Positives = 72/137 (52%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT T++ +R L A+ R+ + ++ + KI+ L +AG V T RGR
Sbjct: 1 MKLTSYTNFALRSLQLAALKEPDLIRVDDVVRVHGLARPHIVKIVHELGRAGYVATQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA+ I I DVV+ TE + ECF + CPL+G C L+ L++A AF
Sbjct: 61 NGGFRLARPAEDIVIGDVVRLTEGPLDLVECFNPERNTCPLIGICKLSRALQEATGAFMA 120
Query: 121 VLTQYSIECLVRNRSSI 137
VL ++ + NR +
Sbjct: 121 VLDNLTLSDIASNRGDL 137
>gi|294340149|emb|CAZ88521.1| putative Transcriptional regulator [Thiomonas sp. 3As]
Length = 154
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 63/129 (48%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TD+G+R LM A + D ++A IS L K+LQ L G V+ RG
Sbjct: 1 MKLTQFTDFGLRALMVLAENPDQSLNSKELARILDISREHLIKVLQRLAAGGYVQNQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL + A +I + +VV+ E+ + EC C L C L +L A AF+
Sbjct: 61 NGGVRLDKDASEILLGNVVRWLEDGQGLVECLRPDGGHCNLTPLCLLRPLLSDAAEAFYA 120
Query: 121 VLTQYSIEC 129
L ++
Sbjct: 121 RLNTSTLAD 129
>gi|253583197|ref|ZP_04860395.1| RRF2 family protein [Fusobacterium varium ATCC 27725]
gi|251833769|gb|EES62332.1| RRF2 family protein [Fusobacterium varium ATCC 27725]
Length = 140
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+R L Y A + RI +IA+ IS +L +IL L I+E R
Sbjct: 1 MKISTKVRYGLRALAYIAEKSGEGKLVRIKEIADDQNISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL + ++IT+ + K +E V +C HK C +CG T + K +
Sbjct: 61 GPNGGYRLAKEPNEITLHQLYKILDEEDKVIDCNESEEHKATCS-EQTCGSTCIWSKLDS 119
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +L + ++ ++N+ I
Sbjct: 120 AMTKILKETTLNEFIKNKDMI 140
>gi|304407560|ref|ZP_07389212.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304343511|gb|EFM09353.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 139
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V++VRG
Sbjct: 1 MKISTKGRYGLTIMMELSAKFGEGPISLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ADQIT DV++ E + + + ++
Sbjct: 61 AYGGYILSKAADQITAGDVIRVLEGPISPVDFTEEDDPAK--------RDLWLRIRDSIA 112
Query: 120 DVLTQYSIECLV 131
VL ++ LV
Sbjct: 113 SVLDSTTLGDLV 124
>gi|310643521|ref|YP_003948279.1| hth-type transcriptional regulator cymr [Paenibacillus polymyxa
SC2]
gi|309248471|gb|ADO58038.1| HTH-type transcriptional regulator cymR [Paenibacillus polymyxa
SC2]
Length = 139
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +T D+++ E + + + ++
Sbjct: 61 AYGGYILANEPSGVTAGDIIRVLEGPISPVDFTEEDDPAK--------RQLWLRIRDSIA 112
Query: 120 DVLTQYSIECLV 131
+VL +++ L+
Sbjct: 113 EVLDSTTLKDLI 124
>gi|51241738|dbj|BAD36774.1| CDG1D [Gluconacetobacter xylinus]
Length = 138
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IR L+Y + I +IA+ IS+ L K++ L G++ RGR
Sbjct: 1 MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAQTHSISQNHLVKVVNRLSSNGVILARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+ L QI I D+++ E + C + C L +C L + K++NAF
Sbjct: 61 SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLRGLFAKSVNAFL 120
Query: 120 DVLTQYSIECLVRNRSSI 137
VL + ++ ++ +
Sbjct: 121 SVLDRITLHDILHEPKKL 138
>gi|303246358|ref|ZP_07332638.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
gi|302492421|gb|EFL52293.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
fructosovorans JJ]
Length = 152
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +Y IR ++Y A+H D +IAEA I FL K+ Q L +AGI+ +G
Sbjct: 1 MRLTRAGEYAIRCVLYLAMHQDRTLISRKEIAEAMEIPAQFLGKVAQSLSRAGIIAIRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + + + +++L VV+A + F+ +C C C + V A
Sbjct: 61 AQGGYEMAKAPEAVSLLSVVEAIDGEIFLNDCIHRPD-TCTRQTICSVHRVWETARRQLR 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L ++ L R
Sbjct: 120 ETLAGTTLAALAREEEQ 136
>gi|312115582|ref|YP_004013178.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhodomicrobium vannielii ATCC 17100]
gi|311220711|gb|ADP72079.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
vannielii ATCC 17100]
Length = 158
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + ++ A ND P +S I+ +S +L ++ L + GIV++VRG
Sbjct: 1 MLLSTKGRYAVMAIVEVARQNDARPLALSDISLRLDLSLAYLEQLFMKLRRKGIVQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD I+I +V+ A +E + C K C C ++
Sbjct: 61 PGGGYILARNADAISIGEVMAAVDEPVRMTRCEPEDKAGCVASKRCSTHNLWLALGTHIE 120
Query: 120 DVLTQYSIECLVRNR 134
L ++ ++ R
Sbjct: 121 RFLADATVADVLTGR 135
>gi|327439663|dbj|BAK16028.1| predicted transcriptional regulator [Solibacillus silvestris
StLB046]
Length = 139
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + QIA +SE +L +++ PL AG+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRQIAADKDLSEAYLEQLVSPLRNAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++I+ DV++ E E + + + + +A
Sbjct: 61 AYGGYMLAHKPNEISAADVIRVLEGPIQPVEGIENEEAP--------QRELWMRIRDAVK 112
Query: 120 DVLTQYSIECLVR 132
+VL +I+ L +
Sbjct: 113 NVLDTTTIDDLAK 125
>gi|119773198|ref|YP_925938.1| Rrf2 family protein [Shewanella amazonensis SB2B]
gi|119765698|gb|ABL98268.1| transcriptional regulator, BadM/Rrf2 family [Shewanella amazonensis
SB2B]
Length = 151
Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats.
Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+GIR LMY A+ + RI++I E +S + KI+ L KAG ++TVR
Sbjct: 1 MQLTRYTDFGIRTLMYMAVQPERTALFRIAEITEVFDLSPNHVSKIIHHLGKAGYLQTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL +PA +I + +V+ E S C K C L+ +C L VL A+ A+
Sbjct: 61 GKAGGFRLAKPAAEINLGALVRELEHSLAPINC---SKPVCRLLPACQLKGVLANAVQAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL QY + +V NR + +
Sbjct: 118 LAVLDQYQLADIVTNRDELLALL 140
>gi|56963349|ref|YP_175080.1| transcriptional regulator [Bacillus clausii KSM-K16]
gi|56909592|dbj|BAD64119.1| transcriptional regulator [Bacillus clausii KSM-K16]
Length = 139
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL A +V++VRG
Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A+ IT D+++ E E + + K +A
Sbjct: 61 AYGGYMLAKDAEDITAGDIIRVLEGPISPVEVLEDEEPAK--------RDLWIKIRDAVK 112
Query: 120 DVLTQYSIECLVR 132
+VL + ++ L
Sbjct: 113 EVLDKTTLADLAN 125
>gi|326384426|ref|ZP_08206106.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
gi|326196771|gb|EGD53965.1| transcriptional regulator [Gordonia neofelifaecis NRRL B-59395]
Length = 176
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TD G+RV+M A + + ++A+ +S + K++ L + G+V + RGR
Sbjct: 1 MQLTRFTDIGLRVVMALAADPEASHTSRRLADDLDLSYTHVAKVVSRLAELGVVHSSRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + + + + + E V +C CPL +C L L A AF+D
Sbjct: 61 SGGLGITELGPRAGVGWLARHLEGDGPVVDC--EGPTPCPLRSACRLRGALAAAQEAFYD 118
Query: 121 VLTQYSIECLVRNRS 135
L + +++ L+ + +
Sbjct: 119 SLDRLTVQDLIADPT 133
>gi|299144222|ref|ZP_07037302.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518707|gb|EFI42446.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 132
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + +++ + P I+ IA+ +SE +L ++ L K +V+++RG
Sbjct: 1 MKLSTKGRYGLMAMYRLSLNYGNGPTPINDIAKEEKLSEAYLEQLFTLLKKKNLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +I I +++ A E ++ + K +C V +C +L K
Sbjct: 61 AAGGYELAKSPSEIKIGEILNALEGDIALSCSSMNIKPECRNVETCPTREILEKLQIKLE 120
Query: 120 DVLTQYSIECL 130
+VL ++ +
Sbjct: 121 EVLDSMTLADM 131
>gi|6136580|sp|Q55433|Y846_SYNY3 RecName: Full=Putative HTH-type transcriptional regulator slr0846
Length = 147
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT ++ Y ++ L+ A+ D P + IAE I +L K+L L +AGIV RG
Sbjct: 1 MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L + DQI++ ++ A EES + D L SV R+ F
Sbjct: 61 VRGGYQLAQAPDQISLGQILAALEESLEPF---PQYGDDQSLAEDWVTLSVWRQLHQKFV 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
L ++ L + S + G
Sbjct: 118 KALYSITLADLYYDARSWQAAQGEG 142
>gi|16331737|ref|NP_442465.1| hypothetical protein slr0846 [Synechocystis sp. PCC 6803]
gi|7429419|pir||S75800 hypothetical protein slr0846 - Synechocystis sp. (strain PCC 6803)
gi|1673323|dbj|BAA10535.1| slr0846 [Synechocystis sp. PCC 6803]
Length = 157
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 4/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT ++ Y ++ L+ A+ D P + IAE I +L K+L L +AGIV RG
Sbjct: 11 MKLTTKSHYSVKALLDLALQPDYGPASVKAIAERQNIPGPYLEKLLITLRRAGIVNAYRG 70
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L + DQI++ ++ A EES + D L SV R+ F
Sbjct: 71 VRGGYQLAQAPDQISLGQILAALEESLEPF---PQYGDDQSLAEDWVTLSVWRQLHQKFV 127
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
L ++ L + S + G
Sbjct: 128 KALYSITLADLYYDARSWQAAQGEG 152
>gi|295689542|ref|YP_003593235.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
21756]
gi|295431445|gb|ADG10617.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
ATCC 21756]
Length = 158
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 54/141 (38%), Gaps = 7/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M L+ + Y + + A D +++IA IS +L ++ L + G+V +
Sbjct: 1 MRLSTKGRYAVMAMTDLAKRQDEGEGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRK 113
RG GG RL + + + I D+V A +E C K C ++ +
Sbjct: 61 ARGPGGGYRLAKASTETFIADIVLAVDEPLRATRCNFTKGQAKGCMAGGERCMTHNLWEE 120
Query: 114 ALNAFFDVLTQYSIECLVRNR 134
L S+ +++
Sbjct: 121 MGRQIHGYLASVSVADVLKGE 141
>gi|320159424|ref|YP_004172648.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
UNI-1]
gi|319993277|dbj|BAJ62048.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
UNI-1]
Length = 136
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 2/130 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++ DY +R ++Y A + + SQIAE I FL KI+ L AG++ T RG
Sbjct: 1 MQITRQADYALRAMVYLARLSPNQRASTSQIAEEQHIPPSFLAKIISQLSIAGLIHTSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGGV L RP ++IT+LDVV+A + + EC + + C C + +
Sbjct: 61 ARGGVTLARPPEEITVLDVVEAIDGPIALNECTSPSGV-CMFGEDCPMKPIWCDTQKELI 119
Query: 120 DVLTQYSIEC 129
D L + +
Sbjct: 120 DRLRRTTFAQ 129
>gi|296136896|ref|YP_003644138.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
K12]
gi|295797018|gb|ADG31808.1| transcriptional regulator, BadM/Rrf2 family [Thiomonas intermedia
K12]
Length = 146
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 63/129 (48%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +D+G+R L+ A ++A IS L K+LQ L G V+T RG
Sbjct: 1 MRLTSFSDFGLRALLVLAGSERETWSSVELAAKLDISRDHLIKVLQRLAAGGYVQTTRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A I I +V++ E+ + ECF C L G C L L +A AF+
Sbjct: 61 GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120
Query: 121 VLTQYSIEC 129
L + ++
Sbjct: 121 ALNETTLAD 129
>gi|237750663|ref|ZP_04581143.1| transcriptional regulator [Helicobacter bilis ATCC 43879]
gi|229373753|gb|EEO24144.1| transcriptional regulator [Helicobacter bilis ATCC 43879]
Length = 139
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/134 (35%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+K +DY R L+Y A H++ N I +A IS+ L KI+ L K ++T RGR
Sbjct: 1 MQLSKFSDYSFRALIYLAQHDNTLNTIENMASELRISQNHLKKIIHKLSKGQFIKTFRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
GG++L + I + DV+ TE + EC S +CP +C L S++ KA NAF
Sbjct: 61 EGGIKLAKKPKDIGLADVLLYTEINTDFVECLKHNSKHTECPYQINCNLKSIIHKAKNAF 120
Query: 119 FDVLTQYSIECLVR 132
+YS++ L++
Sbjct: 121 MQEFQKYSLQDLLQ 134
>gi|297588298|ref|ZP_06946941.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516]
gi|297573671|gb|EFH92392.1| Rrf2 family transcriptional regulator [Finegoldia magna ATCC 53516]
Length = 135
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG
Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +I++ ++++ EE F V EC A + C +C + + +
Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSAVPGL-CSREDTCPSRLIWTQMHDDMI 119
Query: 120 DVLTQYSIECLVRNRS 135
+ + S++ L+
Sbjct: 120 NSIKNVSLQDLISKEK 135
>gi|149202404|ref|ZP_01879377.1| Rrf2 family protein [Roseovarius sp. TM1035]
gi|149144502|gb|EDM32533.1| Rrf2 family protein [Roseovarius sp. TM1035]
Length = 148
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/136 (33%), Positives = 72/136 (52%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD+G+R+LM A D +++A +S L KI+Q L +AG+++T RG
Sbjct: 1 MRLTSFTDFGLRMLMRMASAPDRAFSSAELAAEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +I + DV++ E + CF + +C L G C L + L+ A AF D
Sbjct: 61 GGGAILARPPSEIRLGDVIRHLESGQALVVCFGADAGECSLDGRCRLKARLKAAERAFLD 120
Query: 121 VLTQYSIECLVRNRSS 136
L + ++ + ++
Sbjct: 121 DLDRSTLADIALDQRP 136
>gi|308070333|ref|YP_003871938.1| transcriptional regulator [Paenibacillus polymyxa E681]
gi|305859612|gb|ADM71400.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
Length = 139
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 59/132 (44%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +T D+++ E + + + ++
Sbjct: 61 AYGGYILANEPAGVTAGDIIRVLEGPISPVDFTEEDDPAK--------RQLWLRIRDSIA 112
Query: 120 DVLTQYSIECLV 131
+VL +++ L+
Sbjct: 113 EVLDSTTLKDLI 124
>gi|237806924|ref|YP_002891364.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
9187]
gi|237499185|gb|ACQ91778.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
9187]
Length = 151
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 77/143 (53%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L++ A+ D + I+++A+ IS + KI+ L G ++T+RG
Sbjct: 1 MQLTLFTDYALRTLVFLALQPDQQLSTITEVADRFSISRNHVVKIVHQLGMKGYIDTIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R A I + +++ E + +C C L C +++RKA+ AF
Sbjct: 61 KHGGIRLARSARDINLGNLIADMENVSCLLDCQREG---CRLAPGCRFQAIMRKAMRAFM 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
VL+++++ LVR+ + +
Sbjct: 118 GVLSEFTLADLVRDEEQMCGLLG 140
>gi|163848758|ref|YP_001636802.1| rrf2 family transcriptional regulator [Chloroflexus aurantiacus
J-10-fl]
gi|222526707|ref|YP_002571178.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus sp.
Y-400-fl]
gi|163670047|gb|ABY36413.1| transcriptional regulator, Rrf2 family [Chloroflexus aurantiacus
J-10-fl]
gi|222450586|gb|ACM54852.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus sp.
Y-400-fl]
Length = 146
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DYG+R L A + + P + IA I +L ++L L +AG+VE++RG
Sbjct: 1 MRISSKGDYGLRALFDLAQRYGEGPIQSEAIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+L+V+ E AE + + +
Sbjct: 61 PQGGHLLARSPESITLLEVLTVLEGPILPAEGGRDDLQPTEPSDRAVIDEIWSELRTTIE 120
Query: 120 DVLTQYSIECLVRNRSS 136
L +++ L + + S
Sbjct: 121 RRLAAITLDDLCQRKRS 137
>gi|148379163|ref|YP_001253704.1| rrf2 family protein [Clostridium botulinum A str. ATCC 3502]
gi|153932538|ref|YP_001383539.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|153935743|ref|YP_001387088.1| rrf2 family protein [Clostridium botulinum A str. Hall]
gi|153939009|ref|YP_001390526.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
gi|168178597|ref|ZP_02613261.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
gi|170754484|ref|YP_001780801.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
gi|187780211|ref|ZP_02996684.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC
15579]
gi|226948445|ref|YP_002803536.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|148288647|emb|CAL82728.1| putative transcriptional regulator [Clostridium botulinum A str.
ATCC 3502]
gi|152928582|gb|ABS34082.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|152931657|gb|ABS37156.1| rrf2 family protein [Clostridium botulinum A str. Hall]
gi|152934905|gb|ABS40403.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
gi|169119696|gb|ACA43532.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
gi|182670637|gb|EDT82611.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
gi|187773836|gb|EDU37638.1| hypothetical protein CLOSPO_03807 [Clostridium sporogenes ATCC
15579]
gi|226844524|gb|ACO87190.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|295318607|gb|ADF98984.1| rrf2 family protein [Clostridium botulinum F str. 230613]
Length = 145
Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G
Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT ++++A E V E + + + T++ + +
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVELNDDYLNN--RMEKSIKTNLWDRINESIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++E LV
Sbjct: 119 RVVDSITLEDLVEAYKK 135
>gi|322805498|emb|CBZ03062.1| predicted transcriptional regulator of cysteine synthase, Rrf2
family [Clostridium botulinum H04402 065]
Length = 145
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G
Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT ++++A E V E + + + T++ + +
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVELNDDYLNN--RMEKSIKTNLWDRINESIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++E LV
Sbjct: 119 RVVDSITLEDLVEAYKK 135
>gi|170759361|ref|YP_001786561.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
gi|169406350|gb|ACA54761.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
Length = 145
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 65/137 (47%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YGI+ ++ AI++ + + I+E ISE +L +I L K +++ ++G
Sbjct: 1 MKISTKGKYGIKAIIDLAINSTEEAVTLKSISERQNISEGYLEQIFSLLRKNNLIKGIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT ++++A E V E + + + T++ + +
Sbjct: 61 AQGGYILEKDSAHITAGEILRALEGDLSVVELNDDYLNN--RMEKSIKTNLWDRINESIE 118
Query: 120 DVLTQYSIECLVRNRSS 136
V+ ++E LV
Sbjct: 119 RVVDSITLEDLVEAYKK 135
>gi|23099471|ref|NP_692937.1| hypothetical protein OB2016 [Oceanobacillus iheyensis HTE831]
gi|22777700|dbj|BAC13972.1| hypothetical conserved protein [Oceanobacillus iheyensis HTE831]
Length = 139
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A++ P + IA+ +SE +L ++ PL AG+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIELALNYGQGPTSLKMIAKENNLSEHYLEQLASPLRNAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT DV++ E + E K S+ +A
Sbjct: 61 AYGGYMLSREPKSITASDVLRVLEGPLTIVEGMEEEKP--------AQQSLWLSIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
DVL Q +++ LV + +
Sbjct: 113 DVLDQTTLQDLVDHEND 129
>gi|163761538|ref|ZP_02168610.1| iron-responsive transcriptional regulator [Hoeflea phototrophica
DFL-43]
gi|162281252|gb|EDQ31551.1| iron-responsive transcriptional regulator [Hoeflea phototrophica
DFL-43]
Length = 155
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/130 (48%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +T+Y +R+LM+C D ++ +IA + E FLF ILQ L G++ET RGR
Sbjct: 1 MKLTSQTNYAVRMLMFCHSKGDR-AKVKEIAAFYGLPERFLFNILQRLTAVGLMETTRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA+QI + DVV+ EE+F +AECF + DCPL+ +CGL L +AL +FFD
Sbjct: 60 GGGIRLARPAEQIMLGDVVRLVEENFEMAECFEAGGTDCPLINTCGLNKALSEALRSFFD 119
Query: 121 VLTQYSIECL 130
L +YSI L
Sbjct: 120 SLNRYSIADL 129
>gi|260893739|ref|YP_003239836.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
KC4]
gi|260865880|gb|ACX52986.1| transcriptional regulator, BadM/Rrf2 family [Ammonifex degensii
KC4]
Length = 137
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MHLTKR-TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +R T+Y IR L++ A +IAEA I FL KILQ L +AG+V + RG
Sbjct: 1 MELIRRNTEYAIRALVHLAACKGEVVSAKEIAEAQDIPIEFLQKILQRLGRAGLVVSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I +L+V+ + V +CF + C +C L
Sbjct: 61 AAGGFSLARKPSEINLLEVITVMQGRPAVNKCFLG-REACERAPTCRLKYNWLVLEQKIG 119
Query: 120 DVLTQYSIECLVRN 133
+ L +++ LV
Sbjct: 120 EFLADVTLQDLVDQ 133
>gi|88608399|ref|YP_506194.1| rrf2/aminotransferase, class V family protein [Neorickettsia
sennetsu str. Miyayama]
gi|88600568|gb|ABD46036.1| rrf2/aminotransferase, class V family protein [Neorickettsia
sennetsu str. Miyayama]
Length = 530
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT +T Y I + A+H+ + S+IA ISE FL IL PL K GI+E++ G
Sbjct: 10 LTAKTRYAIAASIDIALHSKGRKYVKTSEIASRQKISEKFLELILPPLKKQGILESLLGP 69
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFF 119
GG RL + D I ++ ++KA ++ + C + C C ++ F
Sbjct: 70 GGGYRLAKEPDTIFLMQILKAVADTPKITRCGGDGQQSCTGEAKKCCTHNLWVVLEKRFN 129
Query: 120 DVLTQYSIECLVRN 133
+ +++ ++ +
Sbjct: 130 NFFESVTLQDIISD 143
>gi|296114961|ref|ZP_06833606.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978479|gb|EFG85212.1| CDG1D protein [Gluconacetobacter hansenii ATCC 23769]
Length = 164
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A+ + I ++A+A +SE + K++ L +AG++ TVRGR
Sbjct: 1 MRLTLHTDYALRVLLYVALRPETRVSIREVAQANRVSETHMVKVVHKLGRAGLIRTVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118
GG+ L + A+ I I VV+ TEE + C DC L G C VL AL+AF
Sbjct: 61 GGGIELGQAAEDIRIGAVVRLTEEERQLVSCMRPKAEAEDCVLSGFCQFYFVLGTALDAF 120
Query: 119 FDVLTQYSIECLVR---NRSSIKKIF 141
+VL ++++ +++ ++++F
Sbjct: 121 MEVLDRWTLADILKMSARDDMMRRLF 146
>gi|169795834|ref|YP_001713627.1| putative transcriptional regulator [Acinetobacter baumannii AYE]
gi|260554898|ref|ZP_05827119.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC
19606]
gi|301345360|ref|ZP_07226101.1| putative transcriptional regulator [Acinetobacter baumannii AB056]
gi|301512433|ref|ZP_07237670.1| putative transcriptional regulator [Acinetobacter baumannii AB058]
gi|301596111|ref|ZP_07241119.1| putative transcriptional regulator [Acinetobacter baumannii AB059]
gi|332853212|ref|ZP_08434632.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013150]
gi|332869405|ref|ZP_08438771.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013113]
gi|169148761|emb|CAM86627.1| conserved hypothetical protein; putative transcriptional regulator
[Acinetobacter baumannii AYE]
gi|193077439|gb|ABO12252.2| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978]
gi|260411440|gb|EEX04737.1| FeS assembly SUF system regulator [Acinetobacter baumannii ATCC
19606]
gi|332728782|gb|EGJ60142.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013150]
gi|332732736|gb|EGJ63953.1| transcriptional regulator, Rrf2 family [Acinetobacter baumannii
6013113]
Length = 182
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG
Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
G L R A +I+ LD+V A E + EC F + D G C + +V+ +
Sbjct: 64 GYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQ 123
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A D L +++ +
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143
>gi|317491645|ref|ZP_07950081.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
gi|316921192|gb|EFV42515.1| transcriptional regulator [Enterobacteriaceae bacterium 9_2_54FAA]
Length = 144
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R LMY A + +IA IS + K++ LV G + VRG
Sbjct: 1 MKLTTYTDFGLRALMYLASMPYGQRTSVGEIAGHYDISRNHMVKVVAQLVGLGYIHAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L +PA I I V++A E + +C + C L+ C L + L+ + AF
Sbjct: 61 KGGGIELGKPAADINIGQVIRALESNLNGIDCHSPG---CKLIKICQLQAALKVGMEAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ Y++ LV NR I I
Sbjct: 118 TAMENYTLADLVSNRGEIIAILG 140
>gi|294341067|emb|CAZ89464.1| putative Transcriptional regulator [Thiomonas sp. 3As]
Length = 146
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/129 (34%), Positives = 63/129 (48%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +D+G+R L+ A ++A IS L K+LQ L G V+T RG
Sbjct: 1 MRLTSFSDFGLRALLVLAGSERETWSSVELATKLDISRDHLIKVLQRLAAGGYVQTTRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A I I +V++ E+ + ECF C L G C L L +A AF+
Sbjct: 61 GGGVRLARRATAIRIGEVLQWLEDDAPLTECFRDDGGQCLLTGFCALRPKLERARRAFYA 120
Query: 121 VLTQYSIEC 129
L + ++
Sbjct: 121 ALNETTLAD 129
>gi|78223114|ref|YP_384861.1| BadM/Rrf2 family transcriptional regulator [Geobacter
metallireducens GS-15]
gi|78194369|gb|ABB32136.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
metallireducens GS-15]
Length = 153
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T Y ++ L+Y A D P I+ +A I + FL IL L AG++++ +G+
Sbjct: 2 ISKKTKYALKALLYLAREYDRGPILIADLAREERIPKKFLELILLALKNAGVLQSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L P +IT+ V++ E C + +C SCG+ V++ +A
Sbjct: 62 GGYYLAHPPREITMGKVIRTLEGPLAPVPCVSETAYARCEECDDEWSCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+L ++ ++ K+
Sbjct: 122 MAQILDNATLAAVLERIEQEKQ 143
>gi|254473748|ref|ZP_05087143.1| protein Aau3 [Pseudovibrio sp. JE062]
gi|211957134|gb|EEA92339.1| protein Aau3 [Pseudovibrio sp. JE062]
Length = 142
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 64/127 (50%), Positives = 91/127 (71%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MYCA + D P+++++IA + +SE LFKI++ LV A +++T+RGR GG+ L RPA+QI+
Sbjct: 1 MYCAANPDKPSKVAEIAASFSMSETHLFKIMKVLVDADLMKTIRGRNGGIVLPRPAEQIS 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ VV+ATEESF +AECF S + DCPLV CG SVL +AL AF VL + +I L NR
Sbjct: 61 VGQVVRATEESFLLAECFDSGRQDCPLVNHCGFNSVLHEALEAFLGVLDKCTIADLADNR 120
Query: 135 SSIKKIF 141
+SI+ +
Sbjct: 121 ASIRHLL 127
>gi|28211027|ref|NP_781971.1| RRF2 family protein [Clostridium tetani E88]
gi|28203466|gb|AAO35908.1| RRF2 family protein [Clostridium tetani E88]
Length = 148
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 66/145 (45%), Gaps = 6/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ ++ +++ I+E ISE +L +IL L K G++ + +G
Sbjct: 4 MQISTKGRYGLKAMVNIGVYSSLESVTKKSISEMEDISEKYLEQILSVLKKNGLINSKKG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++IT+ D+++ E V D ++ C +V K
Sbjct: 64 PQGGYTLARNDNEITVGDILRTLEGELEVVN--LEEYNDSNIMELCLKRNVWNKLNKEIN 121
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
++ ++E LV+ K N G
Sbjct: 122 TLVDSITLEELVQEYKGYK---NPG 143
>gi|258511997|ref|YP_003185431.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478723|gb|ACV59042.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 136
Score = 111 bits (279), Expect = 2e-23, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 11/133 (8%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +L+ A +D P + IAE +SE +L +++ PL G V ++RG
Sbjct: 1 MKISTKGRYGLMLLVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I I DV+ A E + + GL + + A
Sbjct: 61 AYGGYVLARHPREIVIEDVLLALEGPITIVD----------EEIDDGLQVLWDRLREAIH 110
Query: 120 DVLTQYSIECLVR 132
DVL+ +++ LV
Sbjct: 111 DVLSSMTLQDLVE 123
>gi|117619511|ref|YP_854778.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
gi|117560918|gb|ABK37866.1| Rrf2 family protein [Aeromonas hydrophila subsp. hydrophila ATCC
7966]
Length = 150
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG
Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R A I + DVV E +C +C L G C + +LR+A+NAF
Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDCKRE---NCRLSGGCRIQGILRRAMNAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+VL +Y++ VR+ + + +
Sbjct: 118 EVLGEYTLADAVRDPTRLCHLLG 140
>gi|319941644|ref|ZP_08015968.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
wadsworthensis 3_1_45B]
gi|319804874|gb|EFW01728.1| BadM/Rrf2 family Transcriptional regulator [Sutterella
wadsworthensis 3_1_45B]
Length = 178
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 71/144 (49%), Gaps = 5/144 (3%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH+T+ TD +RVLMY A + +++IAE + + K++ L + G + T RG
Sbjct: 1 MHITRFTDLSLRVLMYLCARPSQDRTTVTEIAERIGWTRNHVVKVVHRLSQEGWLATQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L A ++ + +V++ E + C C C L VL A N F+
Sbjct: 61 RTGGLGLDPQARKLRLGNVIRTLEGDDCLINC---KDPPCNFGRGCPLIKVLNDAQNVFY 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
+ L Y++E + ++ S + +F
Sbjct: 118 EALNAYTLEDVAQH-SVLAHLFAP 140
>gi|288555374|ref|YP_003427309.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4]
gi|288546534|gb|ADC50417.1| hypothetical protein BpOF4_11820 [Bacillus pseudofirmus OF4]
Length = 139
Score = 111 bits (279), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL A +V++VRG
Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPVSLKSIAKEYKLSEHYLEQLIAPLRNAMLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A++IT D+++ E E + + K +A
Sbjct: 61 AYGGYMLAKDANEITAGDIIRVLEGPISPVEVMDDEEPAK--------RDLWIKIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSSIKK 139
DVL +++ L + K+
Sbjct: 113 DVLDNTTLDDLAKFEDKGKQ 132
>gi|196250088|ref|ZP_03148782.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
G11MC16]
gi|196210272|gb|EDY05037.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
G11MC16]
Length = 138
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + D P + IA A +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLEGPITPVEELEEEEPAK--------RELWIRIRDAVE 112
Query: 120 DVLTQYSIECLVRNRS 135
+VL ++E L +
Sbjct: 113 EVLDSTTLEDLAKYND 128
>gi|328544253|ref|YP_004304362.1| transcriptional regulator [polymorphum gilvum SL003B-26A1]
gi|326413995|gb|ADZ71058.1| Putative transcriptional regulator [Polymorphum gilvum SL003B-26A1]
Length = 155
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 74/143 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT RT+ +R LM+CA+++ R ++IA AC SE + +++ L + G + T RGR
Sbjct: 1 MRLTMRTNLAMRTLMFCAVNSARTVRKAEIARACNASENHIAQVIHLLSQKGYLRTTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL ++I + V ++ E AECF CPL +C L + A+ AF+
Sbjct: 61 NGGIRLGMAMEEINVGTVFRSFEADVPFAECFQGVDNRCPLTAACRLRIAIVGAVGAFYA 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L S+ LV + +I
Sbjct: 121 ALDGLSLADLVAGNRELHRILTP 143
>gi|307823007|ref|ZP_07653237.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
tundripaludum SV96]
gi|307735782|gb|EFO06629.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
tundripaludum SV96]
Length = 151
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD +R+L+Y A + I +IAE IS L K+ L G + T RG
Sbjct: 1 MQLTQFTDLSLRLLIYLARLPEPGMATIQEIAEYHQISRNHLVKVANSLANQGFIMTTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG++L RPA I + +VV+ TE + + ECF + C L+ +C L + L +A AF
Sbjct: 61 KGGGIQLARPAYTIGVGEVVRRTELNMNLVECFDAPTNQCRLIRNCFLKATLYEAQRAFM 120
Query: 120 DVLTQYSIEC 129
VL +Y++
Sbjct: 121 TVLDKYTLAD 130
>gi|293607996|ref|ZP_06690299.1| transcriptional regulator [Acinetobacter sp. SH024]
gi|292828569|gb|EFF86931.1| transcriptional regulator [Acinetobacter sp. SH024]
Length = 182
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG
Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
G L R A +I+ LD+V A E + EC F + D G C + +V+ +
Sbjct: 64 GYLLARSAHEISFLDIVNAIEGEKPLFECQEVREKCAVFNNAPPDWATSGVCAVHAVMLQ 123
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A D L +++ +
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143
>gi|89896939|ref|YP_520426.1| hypothetical protein DSY4193 [Desulfitobacterium hafniense Y51]
gi|89336387|dbj|BAE85982.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 147
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A+H+ +S IAE ISE +L ++ L KAGI+ +V+G
Sbjct: 1 MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L A +I + +++ E VA + + + V +
Sbjct: 61 AQGGYVLADRAAEIKVGTILRVLEGDLSVANEELPQEGGVSIQECIQVK-VWDQMTERIN 119
Query: 120 DVLTQYSIECLVRNRSSI 137
+++ ++E LV + +
Sbjct: 120 ELVDSLTLEDLVHEYNVM 137
>gi|258512207|ref|YP_003185641.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257478933|gb|ACV59252.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 140
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+LT TDY +RVL+Y A D ++ +IA IS L K + L + G +ETVRG
Sbjct: 1 MNLTLFTDYALRVLIYTANQPDGRLVQVDEIARVYGISRNHLTKAVHRLGQMGYLETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL P + I I DVV+A E+ F V CFA+ C L+ C L L +A++AF
Sbjct: 61 RGGGMRLAMPPNDIRIGDVVRAMEDDFAVVGCFAND--SCVLLPGCKLRRALGEAVDAFL 118
Query: 120 DVLTQYSI 127
+ L QY++
Sbjct: 119 ETLNQYTL 126
>gi|254252225|ref|ZP_04945543.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158]
gi|124894834|gb|EAY68714.1| hypothetical protein BDAG_01443 [Burkholderia dolosa AUO158]
Length = 173
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 81/144 (56%), Gaps = 2/144 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV++Y A+ D I +I++A IS+ L K++Q L + G V+T+RGR
Sbjct: 3 MRLTDYTDYSLRVMLYLAVRGDGLATIQEISDAYGISKNHLMKVVQQLGELGWVDTIRGR 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
GG+RL + Q+T+ VV+ATE F + CF++ C + C L V A +AF
Sbjct: 63 NGGLRLFPESLQLTVGQVVRATENDFALVGCFSAEAESRRCVIELQCRLKGVFAAARDAF 122
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
F L ++++ L SS+ +
Sbjct: 123 FAELDRHTVGELAAPASSLVSLLG 146
>gi|144898377|emb|CAM75241.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 140
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +R+L+Y ++ + + + +I+E IS L KI++ L + G + TVRG+
Sbjct: 1 MKITQFTDYSLRLLIYLSMRREGVSTVREISEFYSISSEHLKKIVRRLSELGHIRTVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R DQI + +++ E+ + C S CP+ G C L SV+ A +AF
Sbjct: 61 HGGLMLAREPDQINLGALLRQ-SENLNLVPCHDSGD-TCPIFG-CKLRSVIEDARDAFLA 117
Query: 121 VLTQYSIECL 130
++ +
Sbjct: 118 AFDGKTLADI 127
>gi|329297952|ref|ZP_08255288.1| transcriptional repressor NsrR [Plautia stali symbiont]
Length = 147
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R L+Y A + I+++ + +S + KI+ L +AG V RG
Sbjct: 1 MQLTSFTDFGLRALIYMATLPQGQQTNITEVTDTYGVSRNHMVKIINQLSRAGFVAATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL ++I I DVV+ E + C +C + +C L S L A+ F
Sbjct: 61 KNGGIRLGMDPEKIVIGDVVRKM-EPLQLVNC-----KECAINPACRLRSALNNAVQLFL 114
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+Y++ LV+N S+ I
Sbjct: 115 QEQDKYTLADLVQNNDSLYHIL 136
>gi|113869472|ref|YP_727961.1| putative transcriptional regulator [Ralstonia eutropha H16]
gi|113528248|emb|CAJ94593.1| putative transcriptional regulator [Ralstonia eutropha H16]
Length = 150
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +DY +R+LMY A + P I+++ + IS L K+ L K G + RG
Sbjct: 1 MQLTRFSDYALRLLMYVARGDGSRPITIAEVGQQFGISHNHLVKVAARLSKLGWISATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG++L A+++TI +++ E V +C C L G+C L L A AF+
Sbjct: 61 RHGGLQLGPGAERLTIGTILRELEGHKAVIDC---DNPPCALNGNCRLKRALDVAEQAFY 117
Query: 120 DVLTQYSIECL 130
L ++ +
Sbjct: 118 LALDDVTLADV 128
>gi|221194912|ref|ZP_03567968.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
49626]
gi|221184815|gb|EEE17206.1| transcriptional regulator, BadM/Rrf2 family [Atopobium rimae ATCC
49626]
Length = 179
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY +R+L + D + +A + F I LV++ IV ++RG
Sbjct: 1 MEVSRKTDYALRILSILVKNPDKVISVRDAVQASDVPYSFARVIQHDLVRSHIVSSMRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG+ L +IT+LDVV+A + +A C CP SC V A
Sbjct: 61 QGGMSLAVDPKEITLLDVVEAIQGPILIAGCESAGPDNTPCPRKASCSFNPVWCNAEKIL 120
Query: 119 FDVLTQYSIECLVRN 133
++ +V
Sbjct: 121 RSYFASVTLSQIVEE 135
>gi|169824321|ref|YP_001691932.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
gi|303234034|ref|ZP_07320683.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4]
gi|167831126|dbj|BAG08042.1| putative transcriptional regulator [Finegoldia magna ATCC 29328]
gi|302494959|gb|EFL54716.1| transcriptional regulator, Rrf2 family [Finegoldia magna BVS033A4]
Length = 135
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG
Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +I++ ++++ EE F V EC + C +C + + +
Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGL-CSREDTCPSRLIWTQMHDDMI 119
Query: 120 DVLTQYSIECLVRNRS 135
+ + S++ L+
Sbjct: 120 NSIKNVSLQDLISKEK 135
>gi|258514866|ref|YP_003191088.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
acetoxidans DSM 771]
gi|257778571|gb|ACV62465.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
acetoxidans DSM 771]
Length = 144
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 73/140 (52%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++T+Y I ++ A I QIA I E+FL K +Q L K+GIV T RG
Sbjct: 1 MQITRQTEYAIHAVIELAQIPFGDFVLIRQIANKLNIPEMFLKKTVQALNKSGIVVTQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL RP+D++T+ DV+ A E + C C C + +L++ A
Sbjct: 61 TNGGVRLSRPSDKLTVADVMAAIEGPLMLNVCLGE-NYQCSNKPFCSIHKILQRTQKAVL 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L++ + +++N+ ++K
Sbjct: 120 RELSRETFADIIKNKLRLEK 139
>gi|145300994|ref|YP_001143835.1| rrf2 family transcriptional regulator [Aeromonas salmonicida subsp.
salmonicida A449]
gi|142853766|gb|ABO92087.1| transcriptional regulator, Rrf2 family [Aeromonas salmonicida
subsp. salmonicida A449]
Length = 150
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 50/143 (34%), Positives = 79/143 (55%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TDY +R L + A+ D + I+++A+ IS + KI+ L G +ETVRG
Sbjct: 1 MQLTRFTDYALRTLTFLAVQPGDRLSTITEVADTFAISRNHVVKIVHQLGIKGYIETVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL R A I + DVV E +C +C L G C + +LR+A+NAF
Sbjct: 61 KHGGIRLGRSAVSINLRDVVMDMEHVLCPVDCKRE---NCRLSGGCRIQGILRRAMNAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+VL +Y++ VR+ + + +
Sbjct: 118 EVLGEYTLADAVRDPTRLCHLLG 140
>gi|73667036|ref|YP_303052.1| BadM/Rrf2 family transcriptional regulator [Ehrlichia canis str.
Jake]
gi|72394177|gb|AAZ68454.1| transcriptional regulator, BadM/Rrf2 family [Ehrlichia canis str.
Jake]
Length = 533
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 7/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M +T R Y + ++ A ++ P ++S IA++ +SE +L +I+ L K G+V
Sbjct: 1 MLITTRLRYAVMFMVSLAQEYYILKGSNQPKKMSHIADSQSLSEGYLEQIIAKLKKQGLV 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRK 113
+ +G GG L + + IT+ ++++ E+ + C ++ I C P C ++
Sbjct: 61 NSTKGPGGGYFLNKSPNIITLNLILESIGENIKITRCKNNNVIRCLPNNAKCITHNLWDN 120
Query: 114 ALNAFFDVLTQYSIECLVRNR 134
N L S+E ++ N
Sbjct: 121 IGNYIKKYLNSISLEDIINNN 141
>gi|298207782|ref|YP_003715961.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter
atlanticus HTCC2559]
gi|83850420|gb|EAP88288.1| transcriptional regulator, BadM/Rrf2 family protein [Croceibacter
atlanticus HTCC2559]
Length = 136
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L + A + P +I+ I+EA IS+ FL IL L K GI+ + +G+
Sbjct: 2 LSKKTKYGIKALTHLARQENQAPVQIATISEAENISQKFLESILLTLKKNGILSSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + A I++++V++ E + C + DCP +C + ++ + ++
Sbjct: 62 GGYYLLKEAKDISMVNVMRVLEGPIAMVPCVSLNYYEKCDDCPDEHACSVHKLMIEVRDS 121
Query: 118 FFDVLTQYSIECLV 131
D+ S+ L+
Sbjct: 122 TLDIFNNKSLADLI 135
>gi|150016720|ref|YP_001308974.1| BadM/Rrf2 family transcriptional regulator [Clostridium
beijerinckii NCIMB 8052]
gi|149903185|gb|ABR34018.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
beijerinckii NCIMB 8052]
Length = 130
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L+K +DY R+L+Y A + D + ++A ISE L KI+ L K V + +GR
Sbjct: 1 MNLSKFSDYAFRILIYLAKNQDKICTVEELASNLEISEHHLKKIVHRLGKTEYVISTKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L I + ++ TEES ++ECF+S K C C L ++L ++N+F D
Sbjct: 61 NGGLKLGLEPKDINLGKILIITEESISISECFSSAKHTCS-TSKCKLKAILSSSINSFVD 119
Query: 121 VLTQYSIECLV 131
++Y++E ++
Sbjct: 120 EFSKYTLEDIL 130
>gi|312116284|ref|YP_004013880.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhodomicrobium vannielii ATCC 17100]
gi|311221413|gb|ADP72781.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
vannielii ATCC 17100]
Length = 150
Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ ++Y A D P I++IAEA I + FL IL L G++ + +G+
Sbjct: 2 LSAKCKYGLKAMVYIARRGDKGPVLIAEIAEAENIPKKFLDVILLELKVNGMLTSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEES-FFVAECFAS----HKIDCPLVGSCGLTSVLRKALN 116
GG +L R +IT+ D+V+ C + DC +C + SV+ + +
Sbjct: 62 GGYQLARRPGKITVADIVRVLGGPNLAPVPCVSKLNYRPCTDCRDEQTCVIRSVMLEVRD 121
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIF 141
A VL ++E + + ++
Sbjct: 122 AIAAVLENVTLEEMSNRVPAAAQVL 146
>gi|219667205|ref|YP_002457640.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfitobacterium hafniense DCB-2]
gi|219537465|gb|ACL19204.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
hafniense DCB-2]
Length = 147
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A+H+ +S IAE ISE +L ++ L KAGI+ +V+G
Sbjct: 1 MKISTKGRYGLRALLDLAVHSRGEHVPLSNIAERQNISENYLEQVFSALRKAGIINSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L A +I + +++ E VA + + + V +
Sbjct: 61 AQGGYVLADKAAEIKVGTILRVLEGELSVANEELPQEGGVSIQECIQVK-VWDQMTERIN 119
Query: 120 DVLTQYSIECLVRNRSSI 137
+++ ++E LV + +
Sbjct: 120 ELVDSLTLEDLVHEYNVM 137
>gi|84683690|ref|ZP_01011593.1| Transcriptional regulator [Maritimibacter alkaliphilus HTCC2654]
gi|84668433|gb|EAQ14900.1| Transcriptional regulator [Rhodobacterales bacterium HTCC2654]
Length = 147
Score = 111 bits (278), Expect = 4e-23, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 73/128 (57%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
M+C ++ D R S+IAEA S L +++ L + G VET RGR GG+ L R + I+
Sbjct: 1 MFCGVNTDQTVRSSEIAEATNASGNHLSQVIHKLQQFGYVETRRGRGGGLMLARKPEAIS 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
I + + E ECF + +CPL+ +C L + ++KAL+AF+ L + ++ LV++
Sbjct: 61 IGALFRDFEAEVPFTECFDAANNNCPLIETCRLNTYIKKALDAFYSELDEVTLADLVKDN 120
Query: 135 SSIKKIFN 142
+ ++ +
Sbjct: 121 CGLIELLD 128
>gi|83859025|ref|ZP_00952546.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii
HTCC2633]
gi|83852472|gb|EAP90325.1| hypothetical protein OA2633_11510 [Oceanicaulis alexandrii
HTCC2633]
Length = 152
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 49/142 (34%), Positives = 78/142 (54%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ LT +++ +R+L + A+H R +A A IS L K + L K G ++ VRGR
Sbjct: 6 LRLTNFSNFALRLLQFAALHAPNLIRTEDVARAHGISRHHLLKAVNTLEKEGFIKAVRGR 65
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L RPA+ +T+ +V++ TE + ECF + CPL+G C L++ ++ A AF
Sbjct: 66 NGGITLNRPAEDVTVGEVIRITEAPLELVECFNAETNTCPLIGVCHLSASIQTATRAFLA 125
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +I + NRS + N
Sbjct: 126 VLDDVTIADIAANRSVLLSRLN 147
>gi|222054747|ref|YP_002537109.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221564036|gb|ACM20008.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 153
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 71/143 (49%), Gaps = 5/143 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T YG++ ++Y A +++ P I+ +A I + FL IL L G++++ +G+
Sbjct: 2 ISKKTKYGLKAMIYLAKVYDQGPVLIADLAREEKIPKKFLELILLTLKNHGVLQSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I++ +V+ + C + +C +CG+ V++ +A
Sbjct: 62 GGYYLGKLPKEISLGKLVRILDGPLAPVPCVSETAYAKCDECLDERTCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
++L S+ ++ +++
Sbjct: 122 IAEILDGTSLADVLERSEKAEQL 144
>gi|237737739|ref|ZP_04568220.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817]
gi|229419619|gb|EEO34666.1| RRF2 family protein [Fusobacterium mortiferum ATCC 9817]
Length = 140
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R YG++ L+Y A + + RI +I++ IS +L +IL L I+E R
Sbjct: 1 MKISTRVRYGLKALVYIADKSSENKLVRIKEISDEQGISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL + +IT+ + K +E V +C HK C G+C + K N
Sbjct: 61 GPNGGYRLAKEPKEITLHQLYKILDEEEKVIDCNESEEHKAVCSD-GTCSGKCIWGKLDN 119
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +L + +++ ++N+ I
Sbjct: 120 AMTKILEETTLDEFIKNKDMI 140
>gi|296116952|ref|ZP_06835554.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295976518|gb|EFG83294.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 159
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 63/146 (43%), Positives = 83/146 (56%), Gaps = 5/146 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y IH D I +IA+A ISE L KI+ L + G VET+RGR
Sbjct: 10 MRLTLHTDYALRTLIYLGIHTDRLTSIHEIAQAYGISENHLIKIIHRLGRGGFVETLRGR 69
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
RGG+RL RPA I I DVV+ TEE + C A C LVG C L +L +AL +
Sbjct: 70 RGGLRLGRPAHDILIGDVVRYTEEDLGLVSCMQAPAEGVRPCLLVGGCSLRGILNEALGS 129
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
F VL Y++E + +++ +A
Sbjct: 130 FMSVLDSYTLEQAITAHE--RRLLDA 153
>gi|307292739|ref|ZP_07572585.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
chlorophenolicum L-1]
gi|306880805|gb|EFN12021.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
chlorophenolicum L-1]
Length = 150
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 78/134 (58%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TDY +RVL++ + I +IA+A +S L K++ L + G+++T RGR
Sbjct: 1 MQLTRHTDYALRVLIHLTVAPSGRATIPEIADAYSLSRNHLMKVVHHLGQGGLLDTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP + I+I +VV+ +E +A+C C L +CGL+++L+ A AF
Sbjct: 61 GGGFTLARPPEAISIGEVVRHSEPDMNMADC-----GSCALRTACGLSAILKAATAAFLA 115
Query: 121 VLTQYSIECLVRNR 134
VL ++S+ R++
Sbjct: 116 VLDRHSLADAARDK 129
>gi|332521686|ref|ZP_08398139.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola
5H-3-7-4]
gi|332042775|gb|EGI78975.1| transcriptional regulator, Rrf2 family [Lacinutrix algicola
5H-3-7-4]
Length = 135
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L+Y A P +I+ I++A IS+ FL IL L K GI+ + +G+
Sbjct: 2 LSKKTKYGIKALVYLAKQEVRVPVQIATISKAENISQKFLESILLTLKKKGILGSKKGKL 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + + + +V++ E + C + DCP C + +++ + ++
Sbjct: 62 GGYYLVKEPETVAMAEVMRVLEGPIAMVPCVSLNFYEPCDDCPDETVCAVHNLMEEVRDS 121
Query: 118 FFDVLTQYSIECLV 131
+ ++ +
Sbjct: 122 SLKIFNNKTLADFI 135
>gi|56421100|ref|YP_148418.1| hypothetical protein GK2565 [Geobacillus kaustophilus HTA426]
gi|261418418|ref|YP_003252100.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y412MC61]
gi|297529270|ref|YP_003670545.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. C56-T3]
gi|319767622|ref|YP_004133123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y412MC52]
gi|56380942|dbj|BAD76850.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
gi|261374875|gb|ACX77618.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y412MC61]
gi|297252522|gb|ADI25968.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
C56-T3]
gi|317112488|gb|ADU94980.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y412MC52]
Length = 138
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + D P + IA+A +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKYGDRPISLRSIAKANNLSEHYLEQLVTPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT D+++ E E + + + +A
Sbjct: 61 AYGGYVLAEHPAKITAGDILRVLEGPLTPVEELEEEEPAK--------RELWIRIRDAVE 112
Query: 120 DVLTQYSIECLVR 132
+VL ++E L +
Sbjct: 113 EVLDSTTLEDLAK 125
>gi|332968974|gb|EGK08018.1| transcriptional repressor NsrR [Kingella kingae ATCC 23330]
Length = 147
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 48/132 (36%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT++TDY +RVL+Y AI++D I++IA+ IS+ L K++ LVK G + ++RG+
Sbjct: 1 MHLTQQTDYALRVLIYAAINDDGLVNIAEIAKVYNISKSHLMKVVTALVKGGFLYSIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +P +I + +VV+ E + ECF + +C + C L +L L F
Sbjct: 61 GGGLRLGKPTAEINVGEVVR-LMEPLTIVECFGD-RNECLISPHCRLAGILNSGLKVFLS 118
Query: 121 VLTQYSIECLVR 132
L +Y++ L+
Sbjct: 119 HLDKYTLADLIN 130
>gi|94312314|ref|YP_585524.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
metallidurans CH34]
gi|93356166|gb|ABF10255.1| putative transcriptional regulator [Cupriavidus metallidurans CH34]
Length = 155
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +DY +R+LMY + + P I+++ + IS L K+ L K G + RG
Sbjct: 6 MQLTRFSDYALRLLMYVSRGDGSRPITIAEVGQQFDISHNHLVKVAARLSKLGWISATRG 65
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG++L A+++++ +++ E + +C C L G+C L L A AF+
Sbjct: 66 RHGGLQLGPGAEKLSVGAILRELEGRKAIIDCAD---PPCALNGNCRLKRALDDAEEAFY 122
Query: 120 DVLTQYSIECL 130
L ++ +
Sbjct: 123 RALDGVTLADV 133
>gi|167646548|ref|YP_001684211.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
gi|167348978|gb|ABZ71713.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
Length = 159
Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 52/147 (35%), Gaps = 13/147 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M L+ + Y + + A D +++IA IS +L ++ L + G+V
Sbjct: 1 MRLSTKGRYAVMAMTDLARRQDEAEGGRAVALAEIAARQQISLSYLEQLFARLRRKGLVV 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF--------ASHKIDCPLVGSCGL 107
+ RG GG RL Q I D+V A +E C + K C
Sbjct: 61 SARGPGGGYRLALDPAQTRISDIVLAVDEPLRATRCGLSKAGVGKGAPKGCMAGGAQCLT 120
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNR 134
+ + L S+ ++ +
Sbjct: 121 HDLWEEMGRQIHGYLASVSVADVLNGK 147
>gi|296123021|ref|YP_003630799.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
3776]
gi|296015361|gb|ADG68600.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
DSM 3776]
Length = 154
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+++ DY +R+L+ A + P +S++A + FL I+ L G +E+ G
Sbjct: 1 MKLSRKADYALRILITLAARFGESPISLSELARMNDAPKRFLEHIVLDLKSQGWIESSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
R+GG L +P +QIT+ V++ + + C + S C C VL + N
Sbjct: 61 RKGGYVLAQPPEQITMGQVIRFFDGVIAPSPCVSTSAHRPCSQARLCRFRRVLLEIRNFA 120
Query: 119 FDVLTQYSIECLVR 132
L ++ L+
Sbjct: 121 SRYLDNMTLARLID 134
>gi|15613822|ref|NP_242125.1| hypothetical protein BH1259 [Bacillus halodurans C-125]
gi|10173875|dbj|BAB04978.1| BH1259 [Bacillus halodurans C-125]
Length = 139
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IA+ +SE +L +++ PL A +V++VRG
Sbjct: 1 MKISTKGRYGLTIMMALAKKSGEGPISLKSIAKEHDLSEHYLEQLIAPLRNAMLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +IT D+++ E E + + + K +A
Sbjct: 61 AYGGYMLAKEASEITAGDIIRVLEGPISPVEVMENEEPAK--------RDLWIKIRDAVK 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL ++E L
Sbjct: 113 EVLDSTTLEDLANYEDK 129
>gi|262279220|ref|ZP_06057005.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262259571|gb|EEY78304.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 182
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG
Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
G L R A +I+ LD+V A E + EC F D G C + +V+ +
Sbjct: 64 GYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAVFNHAPPDWATSGVCAVHAVMLQ 123
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A D L +++ +
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143
>gi|114565174|ref|YP_752688.1| transcriptional regulator, BadM/Rrf2 family protein [Shewanella
frigidimarina NCIMB 400]
gi|114336467|gb|ABI73849.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
frigidimarina NCIMB 400]
Length = 151
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/139 (35%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+GIR+LMY A+ ++ RI+++ +S + KI+ L K G ++TVR
Sbjct: 1 MQLTRYTDFGIRILMYLAVQSERENLFRIAEVTSVFDLSSNHVAKIIHQLGKMGYLQTVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG RL + AD++ I +V+ E S +C + + C C L VL +A+ A+
Sbjct: 61 GKSGGFRLAKAADEVLIGQLVRDLEHSLSPIDCESPY---CRFTPICRLKGVLGQAVTAY 117
Query: 119 FDVLTQYSIECLVRNRSSI 137
VL QY++ +V N+S I
Sbjct: 118 LAVLDQYTLADIVSNKSDI 136
>gi|310824816|ref|YP_003957174.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca
DW4/3-1]
gi|309397888|gb|ADO75347.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca
DW4/3-1]
Length = 177
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
HLT +YGI L++ ND P +AE IS FL KI L KAGIV G R
Sbjct: 3 HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL + + I+ L++V A E + +C F G C + +V+
Sbjct: 63 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 122
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A + + L + S+ + +
Sbjct: 123 RAEKSMRETLAKESLADVAK 142
>gi|115376145|ref|ZP_01463389.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca
DW4/3-1]
gi|115366868|gb|EAU65859.1| transcriptional regulator, BadM/Rrf2 family [Stigmatella aurantiaca
DW4/3-1]
Length = 264
Score = 111 bits (277), Expect = 5e-23, Method: Composition-based stats.
Identities = 43/140 (30%), Positives = 64/140 (45%), Gaps = 9/140 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
HLT +YGI L++ ND P +AE IS FL KI L KAGIV G R
Sbjct: 90 HLTTSVEYGIHCLIWLVDSNDTPLSSRDLAELQGISPTFLAKIFPKLEKAGIVAASEGVR 149
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL + + I+ L++V A E + +C F G C + +V+
Sbjct: 150 GGYRLAKAPEDISFLEIVDAIEGEKPLFDCQQIRGRCAVFEGTTPPWATAGVCAVHAVML 209
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A + + L + S+ + +
Sbjct: 210 RAEKSMRETLAKESLADVAK 229
>gi|163796150|ref|ZP_02190112.1| rrf2 family protein [alpha proteobacterium BAL199]
gi|159178609|gb|EDP63149.1| rrf2 family protein [alpha proteobacterium BAL199]
Length = 167
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 57/132 (43%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L + TDY I VL A + +A+A + + K+L+ + ++ RG
Sbjct: 13 LRLNRMTDYAIVVLGQMAHEAGRVRTAAALADATGVPVPTVSKLLKQMAAVSLISAHRGA 72
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L RPA +T+ ++++A E + C + C + SC + + A
Sbjct: 73 KGGYALDRPAAAVTVTEIIQALEGPIALTACVDGAEECCEVEHSCPMRGNWNRVNRAIRA 132
Query: 121 VLTQYSIECLVR 132
L ++ +V
Sbjct: 133 ALDGVTLADMVD 144
>gi|254476056|ref|ZP_05089442.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
gi|214030299|gb|EEB71134.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
Length = 137
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 51/129 (39%), Positives = 71/129 (55%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MYCA ++D S+IAE C ISE L +++ L + G + T RGR GG+ L RPA +I
Sbjct: 1 MYCAANSDRLVTKSEIAERCNISENHLAQVINQLAQLGYLRTQRGRNGGMSLGRPAGKIG 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
I DV + E + + ECFA CPLV +C L L A AF+ L ++E LV +
Sbjct: 61 IGDVFRDVEGTVPMVECFADADNTCPLVSACRLRVALADAAQAFYRSLDGITLEALVCDN 120
Query: 135 SSIKKIFNA 143
+ +F A
Sbjct: 121 DELFALFQA 129
>gi|167562509|ref|ZP_02355425.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
gi|167569690|ref|ZP_02362564.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
Length = 165
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 81/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH---KIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ +VV+ TE F + CFA C + +C L V A +A
Sbjct: 61 NGGLRLNAQSAALTVGEVVRKTENDFALVGCFADESESHRSCVIQSACRLKGVFAAARDA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 121 FFAELDKHTIGELSQPASQLAALLG 145
>gi|157738497|ref|YP_001491181.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
RM4018]
gi|315635366|ref|ZP_07890633.1| transcriptional regulator superfamily protein [Arcobacter butzleri
JV22]
gi|157700351|gb|ABV68511.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
RM4018]
gi|315480351|gb|EFU71017.1| transcriptional regulator superfamily protein [Arcobacter butzleri
JV22]
Length = 152
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 2/129 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++K+TDY +R L A D I +++E+ + FL I+ + +AG V+++ GR
Sbjct: 1 MKVSKKTDYALRALFAIA-EADNLISIRELSESVDVPRRFLENIMLEMNRAGWVKSIPGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +D+IT+ +V++ E + C + S+ C G C V N
Sbjct: 60 YGGYVLAKGSDEITLGEVIRYFEGMIAMISCVSVSNYEPCSQEGKCYFRRVFLNIRNLTA 119
Query: 120 DVLTQYSIE 128
+L + +I
Sbjct: 120 QILDKTTIA 128
>gi|289434795|ref|YP_003464667.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289171039|emb|CBH27581.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|313633162|gb|EFS00046.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
gi|313637744|gb|EFS03103.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
Length = 140
Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A + P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRNRSS 136
DVL Q ++ L+++ S
Sbjct: 113 DVLDQTTLSDLLKHNSD 129
>gi|291485160|dbj|BAI86235.1| hypothetical protein BSNT_03994 [Bacillus subtilis subsp. natto
BEST195]
Length = 139
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 2 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L D IT D+++ E E + + + +A
Sbjct: 62 AYGGYVLGSEPDAITAGDIIRVLEGPISPVEVLEDEEPAK--------RELWIRIRDAVK 113
Query: 120 DVLTQYSIECLV 131
+VL ++E L
Sbjct: 114 EVLDSTTLEDLA 125
>gi|156740844|ref|YP_001430973.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus
castenholzii DSM 13941]
gi|156232172|gb|ABU56955.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus
castenholzii DSM 13941]
Length = 146
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +YG+R L+ A + P + I I E +L +IL L +AG++E++RG
Sbjct: 1 MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRAGLIESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL RP QIT+LD + A E + + + V A
Sbjct: 61 PQGGHRLARPPSQITVLDALTALEGPLLALDSGRDALTPTEPMDRDLVREVWDGAREILE 120
Query: 120 DVLTQYSIECLVRNRSS 136
L ++E L + ++
Sbjct: 121 RYLASVTLEDLCQRKAQ 137
>gi|303238934|ref|ZP_07325465.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
cellulolyticus CD2]
gi|302593567|gb|EFL63284.1| transcriptional regulator, BadM/Rrf2 family [Acetivibrio
cellulolyticus CD2]
Length = 149
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 63/142 (44%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG+R ++ A+H + IAE IS +L ++ L K+G+V++V+G
Sbjct: 1 MKFSTKGRYGLRAMVDLAVHAKGEHVALCSIAERQGISMNYLEQVFSVLRKSGLVKSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L I + +++ E V + + + + SC V K +
Sbjct: 61 AQGGYILSESPADIKVGRILRVLEGPLSVIDEDAENSTENESRIQSCIRMCVWDKMNESL 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
D+ ++E LV N + I
Sbjct: 121 NDLADSLTLEDLVDNYWKMNGI 142
>gi|138896135|ref|YP_001126588.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2]
gi|134267648|gb|ABO67843.1| RRF2 family protein [Geobacillus thermodenitrificans NG80-2]
Length = 139
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + D P + IA A +SE +L +++ PL AG+V+++RG
Sbjct: 2 MKISTKGRYGLTIMIELAKKYGDRPISLRSIARANNLSEHYLEQLVTPLRNAGLVKSIRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT D+++ E E + + + +A
Sbjct: 62 AYGGYVLAEHPAKITAGDILRVLEGPITPVEELEEEEPAK--------RELWIRIRDAVE 113
Query: 120 DVLTQYSIECLVRNRS 135
+VL ++E L +
Sbjct: 114 EVLDSTTLEDLAKYND 129
>gi|212696195|ref|ZP_03304323.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM
7454]
gi|212676824|gb|EEB36431.1| hypothetical protein ANHYDRO_00731 [Anaerococcus hydrogenalis DSM
7454]
Length = 134
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + Y A + D +S I+ + E +L ++++ L K +V + RG
Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKKNNLVISARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R A IT+ DV++A E ++C A + +C C V K +A
Sbjct: 61 AKGGYKLSRSASDITVGDVLRALEGEMTSSQCVAD-RNNCNNEE-CEAYYVFAKIDDAIN 118
Query: 120 DVLTQYSIECLVRNR 134
+ + +I+ +V +
Sbjct: 119 NAVNSITIKDMVNEK 133
>gi|16126109|ref|NP_420673.1| RrF2 family protein [Caulobacter crescentus CB15]
gi|221234879|ref|YP_002517315.1| Rrf2 family protein [Caulobacter crescentus NA1000]
gi|13423309|gb|AAK23841.1| RrF2 family protein [Caulobacter crescentus CB15]
gi|220964051|gb|ACL95407.1| Rrf2 family protein [Caulobacter crescentus NA1000]
Length = 158
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 54/141 (38%), Gaps = 7/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M L+ + Y + + A D +++IA IS +L ++ L + G+V +
Sbjct: 1 MRLSTKGRYAVMAMTDLAKRQDESDGRAVALAEIAARQQISLSYLEQLFARLRRKGLVIS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRK 113
RG GG RL + +D+ I D+V A +E C K C ++ +
Sbjct: 61 ARGPGGGYRLAKASDETFIADIVLAVDEPLRATRCNFTKGQAKGCMAGGERCMTHNLWEE 120
Query: 114 ALNAFFDVLTQYSIECLVRNR 134
L S+ ++
Sbjct: 121 MGRQIHGYLASVSVADVLAGE 141
>gi|284046052|ref|YP_003396392.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Conexibacter woesei DSM 14684]
gi|283950273|gb|ADB53017.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
DSM 14684]
Length = 152
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ +TDY +R + A + +++P + +IA A I FL IL L + GIV + RG
Sbjct: 1 MRISAKTDYAVRAAVELAAVTDEHPLKSERIATAQEIPLRFLENILVQLRQGGIVVSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL P ++IT+ DV++A + K+D L V +
Sbjct: 61 AEGGYRLALPPEEITVADVIRAIDGPLAAVSGERPEKLDFHGTAE-PLREVWVAVRASLR 119
Query: 120 DVLTQYSIECLV 131
DVL ++ L
Sbjct: 120 DVLEHVTLADLA 131
>gi|148556886|ref|YP_001264468.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148502076|gb|ABQ70330.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
RW1]
Length = 137
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++RT Y IR L++ A H + P ++++IAE I FL IL + +AG VET+RG+
Sbjct: 2 LSQRTRYAIRALLHLADHHGEGPIQLAEIAERQNIPAKFLTVILSEMKRAGFVETMRGKE 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L R +IT D+V+AT S + C A C C L V+ +
Sbjct: 62 GGYWLSRAPTEITYGDIVRATRGSLALVPCAARLAYTPCDHCIDETECRLRGVMLSVRDE 121
Query: 118 FFDVLTQYSIEC 129
+L Q S+
Sbjct: 122 TAKILDQLSLAE 133
>gi|29832300|ref|NP_826934.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
gi|29609419|dbj|BAC73469.1| putative transcriptional regulator [Streptomyces avermitilis
MA-4680]
Length = 152
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R ++ A +D P + IA A I FL IL L + G+V + RG
Sbjct: 1 MRISARADYAVRAVLELAVREDDGPVKAEAIAAAQDIPHKFLEGILGDLRRGGLVASRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R AD IT+ DV++A + + L +
Sbjct: 61 GNGGYRLARAADTITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWVALRANVR 119
Query: 120 DVLTQYSIECLVRN--RSSIKKI 140
+L ++ + + + ++++
Sbjct: 120 KILEGVTLADIAADALPAPVREL 142
>gi|309789575|ref|ZP_07684156.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308228311|gb|EFO81958.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 146
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DYG+R L A + + P + +IA I +L ++L + +AG++E++RG
Sbjct: 1 MRISSKGDYGLRALFDLAQRYGEGPVQSEEIAIRQGIPVNYLNQLLITMRRAGLIESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+ D + E AE + + +V
Sbjct: 61 PQGGHMLARSPETITLRDAIIVLEGPLLPAEASREDLVPTEPDDDTLIDAVWDDLRGQIE 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
+L Q +++ L + + +
Sbjct: 121 QILAQITLDDLCQRKRQQR 139
>gi|85705587|ref|ZP_01036685.1| Putative transcriptional regulator [Roseovarius sp. 217]
gi|85670012|gb|EAQ24875.1| Putative transcriptional regulator [Roseovarius sp. 217]
Length = 138
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 47/134 (35%), Positives = 72/134 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R+LM A + +++A+ +S L KI+Q L + G++ET RG
Sbjct: 1 MRLTSFTDYGLRMLMRMASEPERAYSSAELADEFGLSRNHLAKIMQRLSRGGLIETRRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +PA ++ + +V+ EE + ECFA+ DC + G C L + LR A AF
Sbjct: 61 GGGAVLAKPASELRLGAIVRLLEEGQPLVECFAADSGDCSIDGQCRLKARLRSAEAAFLA 120
Query: 121 VLTQYSIECLVRNR 134
L ++ + N
Sbjct: 121 DLEGSTLAAIALNP 134
>gi|315645813|ref|ZP_07898934.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
gi|315278574|gb|EFU41888.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
Length = 139
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT DV++ E + + + ++
Sbjct: 61 AYGGYILSRDPATITAGDVIRVLEGPISPVDFTEEDDPAK--------RDLWLRIRDSIA 112
Query: 120 DVLTQYSIECLVR 132
+VL +++ L+
Sbjct: 113 EVLDSTTLDYLIN 125
>gi|95930591|ref|ZP_01313326.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
acetoxidans DSM 684]
gi|95133426|gb|EAT15090.1| transcriptional regulator, BadM/Rrf2 family [Desulfuromonas
acetoxidans DSM 684]
Length = 151
Score = 110 bits (276), Expect = 6e-23, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 66/143 (46%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ T+Y IR ++Y + I + ++ FL KI QP+VKAGIV + RG
Sbjct: 1 MVITRATEYAIRAILYMSKFPPGEIVLKKDICQTQNVTPAFLTKIFQPMVKAGIVGSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + IT+ DV KA E+ + +C C C + ++ +
Sbjct: 61 VGGGFYLRHKPEDITVYDVFKAQEDPLHINKCLGDE-NCCERDNYCPVHGAWKEVRESMI 119
Query: 120 DVLTQYSIECLVRNRS-SIKKIF 141
L++Y+ L ++KK+
Sbjct: 120 QQLSEYNFARLAEEEEANLKKLM 142
>gi|291614830|ref|YP_003524987.1| BadM/Rrf2 family transcriptional regulator [Sideroxydans
lithotrophicus ES-1]
gi|291584942|gb|ADE12600.1| transcriptional regulator, BadM/Rrf2 family [Sideroxydans
lithotrophicus ES-1]
Length = 152
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 44/129 (34%), Positives = 69/129 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y A I++I++ IS L K++ L + T RG+
Sbjct: 1 MRLTIYTDYSLRVLLYLASKPGETATITEISDFYNISRNHLVKVVHNLGLNEFIITSRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L R A+ I + DVV+ TE + ECF +C + +C L S+L + +AF
Sbjct: 61 NGGIKLARAAEAILLSDVVRKTEPDMDLLECFNESTDNCVISSACRLKSMLYEGRSAFMA 120
Query: 121 VLTQYSIEC 129
VL + ++
Sbjct: 121 VLEKNTLAD 129
>gi|261405438|ref|YP_003241679.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
Y412MC10]
gi|261281901|gb|ACX63872.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
Y412MC10]
Length = 139
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAAKFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT DV++ E + + + ++
Sbjct: 61 AYGGYILSRDPASITAGDVIRVLEGPISPVDFTEEDDPAK--------RDLWLRIRDSIA 112
Query: 120 DVLTQYSIECLVR 132
+VL +++ L+
Sbjct: 113 EVLDSTTLDYLIN 125
>gi|184158243|ref|YP_001846582.1| transcriptional regulator [Acinetobacter baumannii ACICU]
gi|183209837|gb|ACC57235.1| predicted transcriptional regulator [Acinetobacter baumannii ACICU]
Length = 182
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +Y I L++ + D P +AE +S F+ KI L KAG+V G RG
Sbjct: 4 ITSSVEYAIHCLLFLVNNEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
G L R A +I+ LD+V A E + EC F + D G C + +V+ +
Sbjct: 64 GYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQ 123
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A D L +++ +
Sbjct: 124 AEKAMRDALGAHTLGDIADR 143
>gi|78043306|ref|YP_359262.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77995421|gb|ABB14320.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 142
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 72/134 (53%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK+ +Y + LM A + + +AE + E FL KI+Q LVKAG+V TV+G
Sbjct: 1 MQLTKQGEYALIALMDLAKLPKGQVVPVKTLAERLMLPEAFLAKIVQSLVKAGLVYTVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GGV L + ++IT+L+VV+A E +++C +H C V C L + K
Sbjct: 61 PQGGVALLKDPEKITVLEVVEAVEGPIVLSQCI-NHPDICEKVEICPLHKIWHKVQQKLI 119
Query: 120 DVLTQYSIECLVRN 133
+ + +++ L +
Sbjct: 120 EEFSSHNLLTLSKE 133
>gi|303327293|ref|ZP_07357735.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
3_1_syn3]
gi|302863281|gb|EFL86213.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
3_1_syn3]
Length = 140
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ +T Y R+L Y A H + P + +A IS F+ +IL+ L AGI +VRG
Sbjct: 1 MKLSAKTRYAARILFYMAKHVMNEPISSNLLAAKTGISSQFIEQILRQLRLAGITGSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +++T +VK E +A C + +C G C +
Sbjct: 61 AKGGHILLRKPEELTFGCIVKLMEGGIELAGCLENPG-NCSRFGDCAVRKAWESLQGTLD 119
Query: 120 DVLTQYSIECLVRNRS 135
L ++E L+R++
Sbjct: 120 GALESITMEDLLRDKE 135
>gi|313497210|gb|ADR58576.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
BIRD-1]
Length = 153
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
++ A+H + P ++ I+E IS +L ++ L ++ +V +VRG GG +L R +
Sbjct: 3 AMLDLALHAKNGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGME 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
I + V+ A ES C DC +C + + L+ S+ LV
Sbjct: 63 TIQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIHEFLSGISLADLV 120
Query: 132 RNRS 135
+ R
Sbjct: 121 KRRD 124
>gi|254518634|ref|ZP_05130690.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
gi|226912383|gb|EEH97584.1| transcriptional regulator [Clostridium sp. 7_2_43FAA]
Length = 143
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ AI+ + I I+E ISE +L +I L K GI+ +G
Sbjct: 1 MKISTKGRYGLRALIDLAINIDSENVSIKTISERQNISERYLEQIFSLLRKGGIIVGRKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + ++TI +++K E + + + + ++ +
Sbjct: 61 AQGGYILGKNPSELTISEILKVLEGENIFIDINEEEENELENFIN---KNLWKDINCLIS 117
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ ++E LV K
Sbjct: 118 KYFSAITLEDLVNEYKKSKD 137
>gi|163814456|ref|ZP_02205845.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759]
gi|158450091|gb|EDP27086.1| hypothetical protein COPEUT_00607 [Coprococcus eutactus ATCC 27759]
Length = 144
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 67/136 (49%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + Y +R+++ +I++ + +A C +S+ +L ++ L+KAG + +VRG
Sbjct: 1 MLISSKGQYALRLMVDISINSGSTVTVKAVARRCGLSDKYLEQVTSSLLKAGYLRSVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL PA++IT+ V++ E + D +V + + V A +
Sbjct: 61 RGGYRLNTPAEEITVGMVLREIEGRISPIDNRVDEDGDTNMVMNDVIGEVWDDLETAINN 120
Query: 121 VLTQYSIECLVRNRSS 136
VL +I L R S
Sbjct: 121 VLDNKTIADLTREYSD 136
>gi|91215754|ref|ZP_01252724.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus
torquis ATCC 700755]
gi|91186220|gb|EAS72593.1| transcriptional regulator, BadM/Rrf2 family protein [Psychroflexus
torquis ATCC 700755]
Length = 171
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 70/140 (50%), Gaps = 5/140 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T Y I L+Y A + + P IS+IA+ I FL IL L KAG++ + +G+
Sbjct: 28 ISKKTKYAINALVYLAKRNGEGPIVISEIAQKEHIPRKFLESILLNLKKAGVLASKKGKG 87
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + I + DV++ E + C +C +CG+ ++ + N
Sbjct: 88 GGYYLLQNPEDINLADVMRLVEGPIALLPCVTYKYYERCEECKDEETCGIRNIFYEVRNK 147
Query: 118 FFDVLTQYSIECLVRNRSSI 137
++L + ++ +++ S +
Sbjct: 148 TVELLKKANLAEIIKRESHL 167
>gi|294788820|ref|ZP_06754061.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453]
gi|294483302|gb|EFG30988.1| transcriptional repressor NsrR [Simonsiella muelleri ATCC 29453]
Length = 152
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 80/136 (58%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT++TDY +RVL++ AI++D I+ IA+A IS+ L K++ LVK G + +VRG+
Sbjct: 1 MYLTQQTDYALRVLIFAAINDDSLVNIATIADAYQISKSHLMKVVTALVKGGFLHSVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL RPA +I + VV+ E V ECF C L C L +L + AF
Sbjct: 61 GGGLRLARPAVEICVGAVVRHM-EHLTVVECFGE-NNQCILTPCCRLMDILHGGMKAFLS 118
Query: 121 VLTQYSIECLVRNRSS 136
L Y++ L+ NR +
Sbjct: 119 HLDGYTLADLIGNRQA 134
>gi|331694605|ref|YP_004330844.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326949294|gb|AEA22991.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
dioxanivorans CB1190]
Length = 148
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 50/142 (35%), Positives = 74/142 (52%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T DY +RVL+Y + + IA A IS L K++ L AG+VET RGR
Sbjct: 1 MRHTNHADYALRVLLYLRVAPGRRGSVGDIATAHHISRHHLDKVVTGLAAAGLVETARGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R IT+ ++++A E + V EC + C + G CG +V +AL+A+F
Sbjct: 61 GGGVRLVRDPASITLGEIMRAMENDYAVVECLGPARF-CRVAGVCGARNVFSRALDAYFA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL ++E + N ++
Sbjct: 120 VLDDATLEEIADNDLGLRGALG 141
>gi|182436058|ref|YP_001823777.1| putative transcriptional regulator [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|178464574|dbj|BAG19094.1| putative transcriptional regulator [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 156
Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD +RVLM A+ + P ++A + K++ L G+++ RG
Sbjct: 9 MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 68
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L I +V+ E V EC CPL +C L LR A AF+
Sbjct: 69 RGGGLTLTPAGRSTPIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 126
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV + +
Sbjct: 127 AALDPITVTDLVASPT 142
>gi|254994481|ref|ZP_05276671.1| hypothetical protein LmonocytoFSL_16972 [Listeria monocytogenes FSL
J2-064]
Length = 143
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|209963829|ref|YP_002296744.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
gi|209957295|gb|ACI97931.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
Length = 162
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 57/131 (43%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY + VL A + + + +AE + + K+L+ L + GI+ + RG
Sbjct: 2 LRLSKLTDYAVVVLTAMARSDAPVHTAASLAERTGLPVPTVQKLLKQLARGGILASQRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R +T+ ++++A + + +C + C + C K A
Sbjct: 62 AGGYALLREDTDVTVAEIIEAIDGPIALTDCVDGAEGACGVQSLCPRRGSWDKVNEAVRR 121
Query: 121 VLTQYSIECLV 131
L S+ +
Sbjct: 122 ALDGVSLADMA 132
>gi|329926792|ref|ZP_08281200.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5]
gi|328938992|gb|EGG35360.1| HTH-type transcriptional regulator CymR [Paenibacillus sp. HGF5]
Length = 139
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + P + IAE +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMMELAARFGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT DV++ E + + + ++
Sbjct: 61 AYGGYILSRDPASITAGDVIRVLEGPISPVDFTEEDDPAK--------RDLWLRIRDSIA 112
Query: 120 DVLTQYSIECLVR 132
+VL +++ L+
Sbjct: 113 EVLDSTTLDYLIN 125
>gi|196228245|ref|ZP_03127112.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
Ellin428]
gi|196227648|gb|EDY22151.1| transcriptional regulator, BadM/Rrf2 family [Chthoniobacter flavus
Ellin428]
Length = 209
Score = 110 bits (275), Expect = 8e-23, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMY--CAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+KR +Y +R L+ A P +I ++ E + FL +IL L AG +ET
Sbjct: 1 MKLSKRGEYALRALIDFGIAYELGRPLLKIGELVEKERLPVKFLEQILTQLRGAGYIETK 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKA 114
RG+ GG L +P QI++ V++ + C + + CP CGL ++
Sbjct: 61 RGKAGGYFLAKPPKQISLGQVIRLIDGPLAPISCVSVTAYERCSCPDEAHCGLRMLMLDV 120
Query: 115 LNAFFDVLTQYSIECLVR 132
NA +L +Y + +V
Sbjct: 121 RNAIARILDRYVLGDVVD 138
>gi|328955720|ref|YP_004373053.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
glomerans PW2]
gi|328456044|gb|AEB07238.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
glomerans PW2]
Length = 150
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y +R+++Y A + +IA IS+ +L ++++PL++AG++++VR
Sbjct: 1 MLISSKGRYALRLMIYIAAFGGDQGRVALREIAACEDISQKYLEQLVRPLMRAGLLKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+RGG L +PA+++ D+++ E + C + C C
Sbjct: 61 GKRGGYILGKPAEEVRAGDILRVAEGTTAPVAC-EGLEGACERADLCSTVRFWTGLDAVI 119
Query: 119 FDVLTQYSIECLVRNRS 135
+ ++ L R
Sbjct: 120 ESYVDGVTLAELARAPD 136
>gi|315282426|ref|ZP_07870843.1| Rrf2 family protein [Listeria marthii FSL S4-120]
gi|313613931|gb|EFR87658.1| Rrf2 family protein [Listeria marthii FSL S4-120]
Length = 140
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|254671066|emb|CBA07956.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
Length = 145
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 51/133 (38%), Positives = 78/133 (58%), Gaps = 2/133 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T+ TDYG+RVL+Y AI++D IS IA IS+ L K++ LVK G + +VRG+ G
Sbjct: 1 MTQHTDYGLRVLIYTAINDDALVNISTIAVTYGISKSHLMKVVTALVKGGFLHSVRGKGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+RL P D+I I VV+ E + EC +C + SC LT +L A+ +FF L
Sbjct: 61 GLRLAAPPDRINIGSVVRHL-EPMQLVECMGE-NNECLITPSCRLTGILGGAMKSFFTYL 118
Query: 123 TQYSIECLVRNRS 135
++++ L+ +
Sbjct: 119 DGFTLQDLLNKPT 131
>gi|149201796|ref|ZP_01878770.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035]
gi|149144844|gb|EDM32873.1| hypothetical protein RTM1035_04630 [Roseovarius sp. TM1035]
Length = 156
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 47/132 (35%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY +RVL+Y A + I + A+ IS L K++ L+ G +E +RG
Sbjct: 1 MRLTKFTDYSLRVLLYAATLKPGELTTIEETAKLYDISRAHLKKVVLQLIHEGFLEGIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL R +I + VV+ E F +AECF+ C + C L VL AL F
Sbjct: 61 RSGGFRLARSPGEINLGQVVRKMEPEFALAECFSPDNA-CRVTKGCRLPIVLNLALTNFL 119
Query: 120 DVLTQYSIECLV 131
+ +++ L
Sbjct: 120 NTFDDFTLADLA 131
>gi|257792012|ref|YP_003182618.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|257475909|gb|ACV56229.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
Length = 144
Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A + + +++E IS +L ++ +PLV+AG++ +VRG
Sbjct: 1 MLVSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L + I DV++A E S C + CP G C
Sbjct: 61 KGGGYALAQEPAAIRAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVI 120
Query: 119 FDVLTQYSIECLVRNR 134
+ ++ L
Sbjct: 121 ERYVDGVTLADLAGEP 136
>gi|325266572|ref|ZP_08133249.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394]
gi|324982015|gb|EGC17650.1| transcriptional repressor NsrR [Kingella denitrificans ATCC 33394]
Length = 157
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 51/132 (38%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT++TDY +RVL+Y AI+N+ I++IA+ IS+ L K++ LVK G + +VRG+
Sbjct: 11 MHLTQQTDYALRVLIYTAINNEGLVNIAEIAKTYDISKSHLMKVVTALVKGGFLHSVRGK 70
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + +QI + DVV+ E +AECF +C + C L ++L L F
Sbjct: 71 GGGLRLGKEPEQIRVGDVVR-LTEPMVIAECFGE-NNECIISPHCRLANILNSGLKLFLM 128
Query: 121 VLTQYSIECLVR 132
L Y++ L+
Sbjct: 129 HLDNYTLADLLN 140
>gi|15895504|ref|NP_348853.1| hypothetical protein CA_C2236 [Clostridium acetobutylicum ATCC 824]
gi|15025236|gb|AAK80193.1|AE007724_2 Uncharacterized conserved protein of YjeB/RRF2 family [Clostridium
acetobutylicum ATCC 824]
gi|325509651|gb|ADZ21287.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
Length = 147
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ ++ A+++ + + I++ ISE +L +I L K G+V+ +G
Sbjct: 1 MKISTKGRYGLKAMIDLAVNSVNDIVTLKSISQREKISEGYLEQIFSALRKKGLVKGRKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +IT+ D++ A E V E + + + + +V K A
Sbjct: 61 SQGGYVLGKSMKEITVADILNALEGDLSVVERDENEILKEDKLDNFIRGNVWTKINMAIE 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
+V+ ++E LV + ++ + N+
Sbjct: 121 EVVVSITLEDLVMDYNN---VLNS 141
>gi|313898097|ref|ZP_07831636.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
HGF2]
gi|312957125|gb|EFR38754.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
HGF2]
Length = 137
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + Y + ++ A N I IA+A S +L +I + L KA ++ ++RG+
Sbjct: 1 MKISTKGIYALEAMIELASRNTACVSIRDIADARNCSVKYLEQIFKQLKKAQLLISIRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG ++ + ++IT D++ A EE C + C G C V +
Sbjct: 61 DGGYQIAKDPEEITAKDIILAVEEKLDPVVCLS---HTCTRSGICRTQPVWMGMQEQIYK 117
Query: 121 VLTQYSIECLVR 132
VL +++ L
Sbjct: 118 VLESKTLKYLTD 129
>gi|302380671|ref|ZP_07269136.1| transcriptional regulator, Rrf2 family [Finegoldia magna
ACS-171-V-Col3]
gi|302311614|gb|EFK93630.1| transcriptional regulator, Rrf2 family [Finegoldia magna
ACS-171-V-Col3]
Length = 135
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+ ++Y + D P +++I++A +S +L ++++ L K +V +VRG
Sbjct: 1 MRLSTRGRYGLAAMIYLGKKYGDNPVSLNEISKATGLSNNYLEQLIRELKKQDLVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +I++ ++++ EE F V EC + C +C + + +
Sbjct: 61 VQGGYLLKKSPKEISVAEILECLEEFFGVTECSVVPGL-CSREDTCPSRLIWTQMHDDMI 119
Query: 120 DVLTQYSIECLV 131
+ + S++ L+
Sbjct: 120 NSIKNVSLQDLI 131
>gi|3659616|gb|AAC61685.1| CDG1D [Gluconacetobacter xylinus]
Length = 138
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IR L+Y + I +IA IS+ L K++ L G++ RGR
Sbjct: 1 MRLTLYTDYSIRTLIYLGQNPGRRVAIQEIAATHRISQNHLVKVVNRLSSNGVILARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+ L QI I D+++ E + C + C L +C L + K++NAF
Sbjct: 61 SGGLELAGAPHQIIIGDIIRLMEADMGKIVSCNPENGQACVLADACRLQGLFAKSVNAFM 120
Query: 120 DVLTQYSIECLVRNRSSI 137
VL + ++ ++ +
Sbjct: 121 SVLDRITLHDILHEPKKL 138
>gi|315303269|ref|ZP_07873911.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
gi|313628359|gb|EFR96850.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
Length = 140
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A + P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGEGPISLRSIAKEKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESIEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|87118174|ref|ZP_01074073.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121]
gi|86165808|gb|EAQ67074.1| hypothetical protein MED121_14144 [Marinomonas sp. MED121]
Length = 147
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD+G+R LMY +I + + + ++A S+ K++ L K G V+++RG
Sbjct: 1 MRLTAFTDFGLRTLMYLTSIPTEQLSSVPEVARVYGASQNHFVKVIGQLTKLGYVQSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + A+ I I V++ E C K C + C L L A+ AF
Sbjct: 61 KNGGIRLAKKAEDINIGKVIRELENHLDAVNC---TKPVCQIASCCELKHALALAMEAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
+ QYS+ +V N+ + ++ +
Sbjct: 118 STMEQYSLADIVHNKPELIPLWQS 141
>gi|161870250|ref|YP_001599421.1| DNA-binding protein [Neisseria meningitidis 053442]
gi|161595803|gb|ABX73463.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
053442]
Length = 164
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 17 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 76
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 77 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 134
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ +++
Sbjct: 135 DYLGSVTLQSIIEQKNN 151
>gi|16803555|ref|NP_465040.1| hypothetical protein lmo1515 [Listeria monocytogenes EGD-e]
gi|224499825|ref|ZP_03668174.1| hypothetical protein LmonF1_09119 [Listeria monocytogenes Finland
1988]
gi|224501545|ref|ZP_03669852.1| hypothetical protein LmonFR_03342 [Listeria monocytogenes FSL
R2-561]
gi|254828251|ref|ZP_05232938.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|254829726|ref|ZP_05234381.1| hypothetical protein Lmon1_00155 [Listeria monocytogenes 10403S]
gi|254898319|ref|ZP_05258243.1| hypothetical protein LmonJ_00850 [Listeria monocytogenes J0161]
gi|254912189|ref|ZP_05262201.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254936517|ref|ZP_05268214.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|255025787|ref|ZP_05297773.1| hypothetical protein LmonocytFSL_04615 [Listeria monocytogenes FSL
J2-003]
gi|284801905|ref|YP_003413770.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578]
gi|284995047|ref|YP_003416815.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923]
gi|16410944|emb|CAC99593.1| lmo1515 [Listeria monocytogenes EGD-e]
gi|258600639|gb|EEW13964.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258609111|gb|EEW21719.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|284057467|gb|ADB68408.1| hypothetical protein LM5578_1660 [Listeria monocytogenes 08-5578]
gi|284060514|gb|ADB71453.1| hypothetical protein LM5923_1612 [Listeria monocytogenes 08-5923]
gi|293590162|gb|EFF98496.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|313623689|gb|EFR93841.1| Rrf2 family protein [Listeria innocua FSL J1-023]
Length = 140
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|326797990|ref|YP_004315809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Sphingobacterium sp. 21]
gi|326548754|gb|ADZ77139.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp.
21]
Length = 145
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K++ Y I+ L+ + P +I +IAE I + FL +IL + AGI+ + +G
Sbjct: 2 LSKKSKYAIKALIVLGKNYGKEPMQILKIAEEENIPKKFLEQILLEMRNAGILYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + I + V++ T+ + C + +C +CG+ NA
Sbjct: 62 GGYSLNKDPEDIRLSQVIRLTDGPIALLPCVSLNFYRRCDECKTEETCGIRDTFVDVRNA 121
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+L SI +++ ++
Sbjct: 122 MLQILNDTSIADIIKREENL 141
>gi|293394859|ref|ZP_06639149.1| iron-sulfur cluster assembly transcription factor IscR [Serratia
odorifera DSM 4582]
gi|291422610|gb|EFE95849.1| iron-sulfur cluster assembly transcription factor IscR [Serratia
odorifera DSM 4582]
Length = 151
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 3/125 (2%)
Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ + P ++ I+E IS +L ++ L K G+V +VRG GG L + A +
Sbjct: 1 MLDVALHSQEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKDAAE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A +ES C K C C ++ R L ++ LV
Sbjct: 61 IAVGAVITAVDESVDATRC--QGKEGCQGGDRCLTHTLWRDLSERISGFLNNITLAELVN 118
Query: 133 NRSSI 137
N+ +
Sbjct: 119 NQEVL 123
>gi|296123422|ref|YP_003631200.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
3776]
gi|296015762|gb|ADG69001.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
DSM 3776]
Length = 156
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 72/149 (48%), Gaps = 5/149 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L++++DY +R L+ AI P + ++A+ I FL I+ L AG V +V
Sbjct: 1 MKLSRKSDYALRALVTLAIRQREGGPPTPVRELAKINDIPRRFLEMIMLELKAAGWVTSV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALN 116
GR GG L P +Q+++ VV+ + + C + +H C SC VL N
Sbjct: 61 AGRIGGFHLAVPPEQLSMGQVVRLFDGTLAPLPCVSVTHHEVCSQETSCRFRRVLLDIRN 120
Query: 117 AFFDVLTQYSIECLVRNRSSIK-KIFNAG 144
+ Q +++ +V ++ ++ +IF G
Sbjct: 121 YTARRMDQATLQAVVDSQPVMREEIFAVG 149
>gi|159186104|ref|NP_356355.2| hypothetical protein Atu4299 [Agrobacterium tumefaciens str. C58]
gi|159141238|gb|AAK89140.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 179
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T +YG+ L++ A P +AE IS FL KI L KAGIV G +
Sbjct: 3 QMTVGVEYGLHCLLWLASSPGAPLSSRDLAELQGISPSFLAKIFPKLEKAGIVSASEGIK 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG L RP IT+L+VV E + +C F G C + +V+
Sbjct: 63 GGYLLARPPGDITVLEVVDTIEGRKPLFDCQEIRGRCAVFRQRPPSWATKGVCAIHAVML 122
Query: 113 KALNAFFDVLTQYSIECLVRN 133
+A A D L ++ + +
Sbjct: 123 RAEKAMRDSLASQTLADIAGD 143
>gi|329115699|ref|ZP_08244418.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
gi|326694969|gb|EGE46691.1| HTH-type transcriptional regulator NsrR [Acetobacter pomorum DM001]
Length = 155
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L +TDY +R L++ D + I +IAE ISE + K++ L K G +ET+RGR
Sbjct: 6 MKLNLQTDYALRALIFLGSRTDRLSSIREIAETYRISETHMVKVIHRLGKGGFIETLRGR 65
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
GG+RL R A+ I I VV EE + +C + + C L+ SC L VL + +
Sbjct: 66 NGGIRLGRLAETIRIGAVVSYMEEDMSLLDCLSHKTCEREGTCILMPSCRLRGVLSETMQ 125
Query: 117 AFFDVLTQYSIECLV 131
A VL +Y++ ++
Sbjct: 126 AMMSVLDRYTLADMI 140
>gi|325263740|ref|ZP_08130473.1| Rrf2 family protein [Clostridium sp. D5]
gi|324030778|gb|EGB92060.1| Rrf2 family protein [Clostridium sp. D5]
Length = 146
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A ++ + P + Q A+ IS +L ++ L KAGIV +V+G
Sbjct: 1 MKVSTKGRYGLRALVDMAANSQEGPISLIQTAKRQNISLNYLEQVFGVLRKAGIVVSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R AD IT+ ++++A E F + + + D L V + N
Sbjct: 61 AGGGYKLARSADSITVKEILEALEGEFSIIDKNGEEEADPVQKAIQEL--VWDEIDNKVN 118
Query: 120 DVLTQYSIECLVRNRSS 136
+ L + ++ LVR
Sbjct: 119 EFLGKRTLAQLVREYRE 135
>gi|266625010|ref|ZP_06117945.1| Rrf2 family protein [Clostridium hathewayi DSM 13479]
gi|288863105|gb|EFC95403.1| Rrf2 family protein [Clostridium hathewayi DSM 13479]
Length = 131
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +RV++ A H + ++AE IS+ +L I++ L+K ++ + GR
Sbjct: 2 ISTKGRYALRVMIDLAEHGGEGYIPLKEVAERQEISKKYLEIIVKELIKGKMLIGLGGRG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +LCR ++ + ++++ E S C + C C + + D
Sbjct: 62 GGYKLCRKPEEYKVGEILELMEGSLATVACLSKDAKPCSRAAICKTLPLWSEFDKMVHDY 121
Query: 122 LTQYSIECLV 131
+ ++ L+
Sbjct: 122 FYEKTLADLL 131
>gi|302550950|ref|ZP_07303292.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302468568|gb|EFL31661.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 152
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +RVLM A+ + +AE + L K++ L G++ RGR
Sbjct: 9 MRLLRSTDLALRVLMRLAVAGESSPTTRDVAEGMDVPYTHLAKVVAELQHMGLLTARRGR 68
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L ++ VV+A E V +C CPL +C L LR+A AFF
Sbjct: 69 GGGLSLTERGRSASVGAVVRAFEGDGDVVDC--EGPTPCPLNSACRLRVALRRAQEAFFA 126
Query: 121 VLTQYSIECLVRNRS 135
L ++ +V +
Sbjct: 127 SLDPITVADIVAEPT 141
>gi|53719117|ref|YP_108103.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
gi|53723605|ref|YP_103037.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
gi|76811401|ref|YP_333785.1| transcriptional regulator [Burkholderia pseudomallei 1710b]
gi|121599434|ref|YP_993187.1| Rrf2 family protein [Burkholderia mallei SAVP1]
gi|124383404|ref|YP_001026037.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
gi|126442087|ref|YP_001059260.1| Rrf2 family protein [Burkholderia pseudomallei 668]
gi|126450910|ref|YP_001080694.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
gi|126452205|ref|YP_001066527.1| putative transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|134277214|ref|ZP_01763929.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
gi|167003463|ref|ZP_02269249.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
gi|167738224|ref|ZP_02410998.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
gi|167815414|ref|ZP_02447094.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
gi|167823823|ref|ZP_02455294.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
gi|167845364|ref|ZP_02470872.1| putative transcriptional regulator [Burkholderia pseudomallei
B7210]
gi|167893908|ref|ZP_02481310.1| putative transcriptional regulator [Burkholderia pseudomallei 7894]
gi|167902361|ref|ZP_02489566.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
13177]
gi|167910597|ref|ZP_02497688.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
gi|167918624|ref|ZP_02505715.1| putative transcriptional regulator [Burkholderia pseudomallei
BCC215]
gi|217421524|ref|ZP_03453028.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
gi|237812583|ref|YP_002897034.1| putative transcriptional regulator [Burkholderia pseudomallei
MSHR346]
gi|238563651|ref|ZP_04610659.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
4]
gi|242317014|ref|ZP_04816030.1| putative transcriptional regulator [Burkholderia pseudomallei
1106b]
gi|254177455|ref|ZP_04884110.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
gi|254179517|ref|ZP_04886116.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
gi|254189092|ref|ZP_04895603.1| putative transcriptional regulator [Burkholderia pseudomallei
Pasteur 52237]
gi|254197503|ref|ZP_04903925.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
gi|254199984|ref|ZP_04906350.1| putative transcriptional regulator [Burkholderia mallei FMH]
gi|254206317|ref|ZP_04912669.1| putative transcriptional regulator [Burkholderia mallei JHU]
gi|254260786|ref|ZP_04951840.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
gi|254297396|ref|ZP_04964849.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
gi|254358271|ref|ZP_04974544.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
gi|52209531|emb|CAH35484.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
gi|52427028|gb|AAU47621.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
gi|76580854|gb|ABA50329.1| Transcriptional regulator [Burkholderia pseudomallei 1710b]
gi|121228244|gb|ABM50762.1| Rrf2 family protein [Burkholderia mallei SAVP1]
gi|124291424|gb|ABN00693.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
gi|126221580|gb|ABN85086.1| Rrf2 family protein [Burkholderia pseudomallei 668]
gi|126225847|gb|ABN89387.1| putative transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|126243780|gb|ABO06873.1| putative transcriptional regulator [Burkholderia mallei NCTC 10247]
gi|134250864|gb|EBA50943.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
gi|147749580|gb|EDK56654.1| putative transcriptional regulator [Burkholderia mallei FMH]
gi|147753760|gb|EDK60825.1| putative transcriptional regulator [Burkholderia mallei JHU]
gi|148027398|gb|EDK85419.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
gi|157807741|gb|EDO84911.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
gi|157936771|gb|EDO92441.1| putative transcriptional regulator [Burkholderia pseudomallei
Pasteur 52237]
gi|160698494|gb|EDP88464.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
gi|169654244|gb|EDS86937.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
gi|184210057|gb|EDU07100.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
gi|217395266|gb|EEC35284.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
gi|237503358|gb|ACQ95676.1| putative transcriptional regulator [Burkholderia pseudomallei
MSHR346]
gi|238520270|gb|EEP83732.1| putative transcriptional regulator [Burkholderia mallei GB8 horse
4]
gi|242140253|gb|EES26655.1| putative transcriptional regulator [Burkholderia pseudomallei
1106b]
gi|243061024|gb|EES43210.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
gi|254219475|gb|EET08859.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
Length = 165
Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ +VV+ TE F + CF + C + +C L V A A
Sbjct: 61 NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145
>gi|309379665|emb|CBX21654.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 148
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ ++S
Sbjct: 119 DYLGSVTLQSIIEQKNS 135
>gi|313888209|ref|ZP_07821883.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus
harei ACS-146-V-Sch2b]
gi|312845899|gb|EFR33286.1| putative HTH-type transcriptional regulator IscR [Peptoniphilus
harei ACS-146-V-Sch2b]
Length = 131
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + + P + IA+ +SE +L ++ L KA +V+++RG
Sbjct: 1 MKLSTKGRYGLMAMYNLKENMGKGPIALKDIAKDENLSESYLEQLFTLLRKADLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I I +++ A E ++ C + C C +L K
Sbjct: 61 AGGGYVLARDPQNIAIGEIINALEGDISLSCCDLGKNVACGKQADCATRDILSKLQGKIE 120
Query: 120 DVLTQYSIECL 130
V+ ++ +
Sbjct: 121 GVMESMTLADM 131
>gi|167581669|ref|ZP_02374543.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
Length = 165
Score = 110 bits (274), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ VV+ TE F + CF + +C + +C L V A A
Sbjct: 61 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 121 FFAELDKHTIGELAQPASQLSMLLG 145
>gi|46907743|ref|YP_014132.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47094363|ref|ZP_00232058.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
gi|217964338|ref|YP_002350016.1| Rrf2 family protein [Listeria monocytogenes HCC23]
gi|226224116|ref|YP_002758223.1| hypothetical protein Lm4b_01525 [Listeria monocytogenes Clip81459]
gi|254852139|ref|ZP_05241487.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
gi|254931450|ref|ZP_05264809.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
gi|290893874|ref|ZP_06556852.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
gi|300764819|ref|ZP_07074809.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017]
gi|46881012|gb|AAT04309.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47017261|gb|EAL08099.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
gi|217333608|gb|ACK39402.1| Rrf2 family protein [Listeria monocytogenes HCC23]
gi|225876578|emb|CAS05287.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258605442|gb|EEW18050.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
gi|290556591|gb|EFD90127.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
gi|293583001|gb|EFF95033.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
gi|300514495|gb|EFK41552.1| hypothetical protein LMHG_12594 [Listeria monocytogenes FSL N1-017]
gi|307571096|emb|CAR84275.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99]
gi|313608684|gb|EFR84520.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208]
gi|328465553|gb|EGF36782.1| hypothetical protein LM1816_06485 [Listeria monocytogenes 1816]
gi|328474876|gb|EGF45676.1| hypothetical protein LM220_11812 [Listeria monocytogenes 220]
gi|332311957|gb|EGJ25052.1| HTH-type transcriptional regulator CymR [Listeria monocytogenes
str. Scott A]
Length = 140
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|254824426|ref|ZP_05229427.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
gi|293593662|gb|EFG01423.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
Length = 140
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|15677241|ref|NP_274394.1| hypothetical protein NMB1378 [Neisseria meningitidis MC58]
gi|121635084|ref|YP_975329.1| DNA-binding protein [Neisseria meningitidis FAM18]
gi|218768395|ref|YP_002342907.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
Z2491]
gi|254805173|ref|YP_003083394.1| putative transcription factor [Neisseria meningitidis alpha14]
gi|304387294|ref|ZP_07369487.1| iron-sulfur cluster assembly transcription regulator IscR
[Neisseria meningitidis ATCC 13091]
gi|313668524|ref|YP_004048808.1| transcriptional regulator [Neisseria lactamica ST-640]
gi|60416285|sp|P0A0Y9|Y1593_NEIMA RecName: Full=Putative HTH-type transcriptional regulator NMA1593
gi|60416286|sp|P0A0Z0|Y1378_NEIMB RecName: Full=Putative HTH-type transcriptional regulator NMB1378
gi|7413461|gb|AAF62328.1| conserved hypothetical protein [Neisseria meningitidis MC58]
gi|120866790|emb|CAM10543.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
FAM18]
gi|121052403|emb|CAM08736.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
Z2491]
gi|254668715|emb|CBA06505.1| putative transcription factor [Neisseria meningitidis alpha14]
gi|254669828|emb|CBA04202.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|261392349|emb|CAX49885.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor
IscR [Neisseria meningitidis 8013]
gi|304338677|gb|EFM04794.1| iron-sulfur cluster assembly transcription regulator IscR
[Neisseria meningitidis ATCC 13091]
gi|308389496|gb|ADO31816.1| conserved hypothetical DNA-binding protein [Neisseria meningitidis
alpha710]
gi|313005986|emb|CBN87445.1| putative transcriptional regulator [Neisseria lactamica 020-06]
gi|316984196|gb|EFV63174.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis H44/76]
gi|319410641|emb|CBY91011.1| iron-sulphur cluster-assembly HTH-type transcriptional repressor
IscR [Neisseria meningitidis WUE 2594]
gi|325128433|gb|EGC51314.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis N1568]
gi|325132429|gb|EGC55122.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M6190]
gi|325134386|gb|EGC57031.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M13399]
gi|325136465|gb|EGC59071.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M0579]
gi|325138418|gb|EGC60986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis ES14902]
gi|325140404|gb|EGC62925.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis CU385]
gi|325144688|gb|EGC66986.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M01-240013]
gi|325198522|gb|ADY93978.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis G2136]
gi|325200003|gb|ADY95458.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis H44/76]
gi|325204371|gb|ADY99824.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M01-240355]
gi|325205856|gb|ADZ01309.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M04-240196]
Length = 148
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135
>gi|83721287|ref|YP_442725.1| Rrf2 family protein [Burkholderia thailandensis E264]
gi|83655112|gb|ABC39175.1| Rrf2 family protein [Burkholderia thailandensis E264]
Length = 180
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 16 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 75
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ VV+ TE F + CF + +C + +C L V A A
Sbjct: 76 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 135
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 136 FFAELDKHTIGELAQPASQLSMLLG 160
>gi|237748543|ref|ZP_04579023.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
gi|229379905|gb|EEO29996.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
Length = 172
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ T Y IR+L ++ A P I+ ++E I + I L + I ++
Sbjct: 13 MKLSTHTRYAIRILFELHLAR---GPISIAALSELTNIGLKTVENIHAVLRQNDITASII 69
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG+RL +P I++ +++ +E CF DCP C SV +
Sbjct: 70 GAHGGIRLNKPLSAISLGKMIELFDEGVRFVVCFGEKSNDCPRQNVCETRSVWKTISGQI 129
Query: 119 FDVLTQYSIECLVRNRSS 136
L S+E ++
Sbjct: 130 QKELDTVSLEAILDQYRE 147
>gi|304320316|ref|YP_003853959.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis
HTCC2503]
gi|303299218|gb|ADM08817.1| hypothetical protein PB2503_03712 [Parvularcula bermudensis
HTCC2503]
Length = 174
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 66/139 (47%), Gaps = 6/139 (4%)
Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++++ Y +R ++ A D I+ I+E I + FL +IL L + G++++ RG+
Sbjct: 23 ISQKAKYALRAMVLLARAHAEDEALIIADISERQNIPKKFLEQILLDLKRHGLLDSRRGK 82
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALN 116
GG L RPADQIT +V++ E C + DC SC + V + +
Sbjct: 83 NGGYMLLRPADQITFGEVLRIIEGPIAPLPCLSKMAYRKCEDCDGEKSCEIRRVFAEVAD 142
Query: 117 AFFDVLTQYSIECLVRNRS 135
A VL + +I + +
Sbjct: 143 ATRAVLDKTTIADAIADER 161
>gi|330830081|ref|YP_004393033.1| iron-sulfur cluster assembly transcription factor IscR [Aeromonas
veronii B565]
gi|328805217|gb|AEB50416.1| Iron-sulfur cluster assembly transcription factor IscR [Aeromonas
veronii B565]
Length = 154
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H + P ++ I+E IS +L ++ L K G+V +VRG GG RL +
Sbjct: 1 MLDVALHAEQGPVPLADISERQGISLSYLEQLFARLRKHGLVSSVRGPGGGYRLGLAPGE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I++ V+ A +ES +C C C S+ R L ++ LVR
Sbjct: 61 ISVGQVITAVDESVDATKCLGKGG--CHGGTQCLTHSLWRDLSERISSFLGDITLAELVR 118
Query: 133 NRSSIK 138
+
Sbjct: 119 QADVRR 124
>gi|167619786|ref|ZP_02388417.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
gi|257138937|ref|ZP_05587199.1| Rrf2 family protein [Burkholderia thailandensis E264]
Length = 165
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ VV+ TE F + CF + +C + +C L V A A
Sbjct: 61 NGGLRLNAQSVTLTVGQVVRKTENDFALVGCFTGESEAHRNCVIQSACRLKGVFAAAREA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 121 FFAELDKHTIGELAQPASQLSMLLG 145
>gi|325286870|ref|YP_004262660.1| BadM/Rrf2 family transcriptional regulator [Cellulophaga lytica DSM
7489]
gi|324322324|gb|ADY29789.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga lytica
DSM 7489]
Length = 135
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YG++ L Y A D P I +IA+ IS+ FL IL L + G++ + +G+
Sbjct: 2 LSKKTKYGLKALTYLAQKEDRNPVPIGEIAQQNNISQKFLESILLMLRRTGVLSSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I + DV++ E + C + DCP G+C + ++ K ++
Sbjct: 62 GGYYLIKEPSEILMTDVIRVLEGPIAMVPCVSLNFYEKCDDCPDEGTCSVHKLMLKVRDS 121
Query: 118 FFDVLTQYSIECLV 131
++ ++ L+
Sbjct: 122 ALEIYKNTTLSNLI 135
>gi|309791704|ref|ZP_07686195.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
DG6]
gi|308226254|gb|EFO79991.1| rrf2 family transcriptional regulator [Oscillochloris trichoides
DG6]
Length = 146
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DY +R L A H P + +IA I +L +L L KAG++E++RG
Sbjct: 1 MRISNKGDYALRALFDLAQHIGRGPIQSDEIATRQGIPVNYLNHLLISLRKAGLIESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + IT+L++ + E AE I + +
Sbjct: 61 SQGGHLLARSPESITLLEIFEVVEGQLLCAEPARDDLIPTVPEDRQLINDFWVQLRQRVE 120
Query: 120 DVLTQYSIECLVRNRSS 136
+L +++ L + +
Sbjct: 121 QMLAGITLDDLCQRKQQ 137
>gi|167719226|ref|ZP_02402462.1| putative transcriptional regulator [Burkholderia pseudomallei DM98]
Length = 162
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RV+++ A+ + + I +I++A IS+ L K++Q L + G +ETVRGR
Sbjct: 1 MRLTDYTDYSLRVMLFLAVRGEGLSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNA 117
GG+RL + +T+ +VV+ TE F + CF + C + +C L V A A
Sbjct: 61 NGGLRLNAQSVTLTVGEVVRKTENDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
FF L +++I L + S + +
Sbjct: 121 FFAELDKHTIGELAQPASQLATLLG 145
>gi|116872944|ref|YP_849725.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116741822|emb|CAK20946.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 140
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYILNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLADLLKH 126
>gi|311694378|gb|ADP97251.1| transcriptional regulator, BadM/Rrf2 family [marine bacterium HP15]
Length = 152
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H D P ++ I+ IS +L ++ L + +V ++RG GG RL RPA
Sbjct: 1 MLDLALHGDQGPVSLADISARQEISLSYLEQLFSRLRRQKLVVSIRGPGGGYRLSRPAAD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ I +VV A ES C +K DC C + + L++ S+ L+R
Sbjct: 61 LYIAEVVDAVSESLDTTRC--GNKGDCQNGEKCLTHHLWSDLSDQIHQFLSEISLGDLMR 118
Query: 133 NRSSIKKI 140
+ I+++
Sbjct: 119 -KHEIRQV 125
>gi|194017204|ref|ZP_03055816.1| YrzC [Bacillus pumilus ATCC 7061]
gi|194011072|gb|EDW20642.1| YrzC [Bacillus pumilus ATCC 7061]
Length = 164
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL A +V+++RG
Sbjct: 26 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQNNNLSEHYLEQLVSPLRNARLVKSIRG 85
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E E + + ++ + +A
Sbjct: 86 AYGGYVLAHEPNEITAGDIIRVLEGPISPVEVIENEEPAK--------RALWIRIRDAVK 137
Query: 120 DVLTQYSIECLVRNRSS 136
DVL ++E L +
Sbjct: 138 DVLDNTTLEDLASYKDD 154
>gi|325201913|gb|ADY97367.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis M01-240149]
gi|325208335|gb|ADZ03787.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
meningitidis NZ-05/33]
Length = 148
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L +++ ++ +++
Sbjct: 119 DYLGSVTLQSIIEQKNN 135
>gi|114566820|ref|YP_753974.1| rrf2 family protein [Syntrophomonas wolfei subsp. wolfei str.
Goettingen]
gi|114337755|gb|ABI68603.1| transcriptional regulator, BadM/Rrf2 family [Syntrophomonas wolfei
subsp. wolfei str. Goettingen]
Length = 137
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 70/135 (51%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++T+Y I++L+ A IAE I +FL K +Q L +AG+V T RG
Sbjct: 1 MQITRQTEYAIKILIELAKSPFGELIPSKLIAEQQDIPGMFLQKTVQLLSRAGLVSTQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GGVRL AD+ITI +V+ A E + C + CP + C + +L +A A
Sbjct: 61 IQGGVRLTVSADKITIANVITAIEGPLALNLCLSPG-YSCPNMTDCQVRHILGRAQAALL 119
Query: 120 DVLTQYSIECLVRNR 134
L Q SI +V +
Sbjct: 120 HELQQESIADIVEGK 134
>gi|257783930|ref|YP_003179147.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
20469]
gi|257472437|gb|ACV50556.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
20469]
Length = 198
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY IR+L + + AE I F I LV AG++ + RG
Sbjct: 1 MEISRKTDYAIRMLSSLVRNPKKLLSVRDAAEENDIPYSFARSIQHDLVIAGVIVSTRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
RGG+ L Q+++LD+V+A + F++ C + CP SC + A
Sbjct: 61 RGGMMLAIDPTQVSVLDIVEAVQGPVFISNCEWAGPNNEPCPRHNSCYFGPLWCSAEKTL 120
Query: 119 FDVLTQYSIECLV 131
+ ++ +V
Sbjct: 121 RNFFASVTLHQVV 133
>gi|149176060|ref|ZP_01854677.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797]
gi|148845214|gb|EDL59560.1| hypothetical protein PM8797T_04375 [Planctomyces maris DSM 8797]
Length = 139
Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 71/140 (50%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +TDY +R LMY A +D ++ +AE IS + K++ L + G + +VRG
Sbjct: 1 MQLTMQTDYALRTLMYLASQDDR-ATVANVAELFQISSHHVAKVVNQLSRLGYIRSVRGM 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L P ++I + DV++ E + + EC + + C + C L VL +A +
Sbjct: 60 GGGIELAVPLEKIRLGDVIERFEGNLHLLECVGTENV-CIIQPFCKLKGVLAEAERVQLE 118
Query: 121 VLTQYSIECLVRNRSSIKKI 140
L ++ + + +K I
Sbjct: 119 YLNSVTLADVAPSHRQLKSI 138
>gi|323137714|ref|ZP_08072790.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
49242]
gi|322397011|gb|EFX99536.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
49242]
Length = 150
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 71/142 (50%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +D R L++ + + I +I+ A SE L K+ LVK ++ RGR
Sbjct: 1 MRLTTHSDLAFRTLIFLGVAGERGATIPEISSAFGASEHHLRKVAFELVKLELIRATRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L Q+TI ++++ E F +EC + + C + G+CGL V ++L A F
Sbjct: 61 NGGLALNISPAQVTIGELLRKLEPEFAESECLGAGQKGCVIFGACGLQRVFNESLGALFG 120
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL +Y++ ++ + +
Sbjct: 121 VLDRYTLADVLDSSQGVAARLG 142
>gi|328956203|ref|YP_004373536.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
glomerans PW2]
gi|328456527|gb|AEB07721.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
glomerans PW2]
Length = 162
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY R+L + AE + F I L K G +E++RG
Sbjct: 1 MDISRKTDYAFRILAMLVGSKGSLLSVRTAAEEMDVPYSFARSIQHELTKVGFIESLRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+RL IT+ D+++A + V +C K CP SC + A D
Sbjct: 61 RGGMRLKIDPASITVNDIIEAMQGPLVVNKCLKDGKP-CPRRESCCYHPIWIGAKALLRD 119
Query: 121 VLTQYSIECLVR 132
L+ ++E V
Sbjct: 120 YLSSVTLEEAVN 131
>gi|237745942|ref|ZP_04576422.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
gi|229377293|gb|EEO27384.1| transcriptional regulator [Oxalobacter formigenes HOxBLS]
Length = 156
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ T Y IR++ + + P I+ ++E IS+ + + L + I E + G
Sbjct: 1 MKLSTHTRYAIRIIFELHL-ANSPVSIAALSEQTNISQKVVENVHAILKQNRITEAIIGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+RLC+P +I++ D++ +E CF + DCP C SV +
Sbjct: 60 RGGIRLCKPLSEISLGDMIDLFDEGVRFVVCFGNKSNDCPRQRVCETRSVWKTISGKIRQ 119
Query: 121 VLTQYSIECLVRNRS 135
L + S+E ++
Sbjct: 120 ELGKVSLESILDQYR 134
>gi|28899582|ref|NP_799187.1| transcriptional repressor NsrR [Vibrio parahaemolyticus RIMD
2210633]
gi|153839631|ref|ZP_01992298.1| protein YjeB [Vibrio parahaemolyticus AQ3810]
gi|260361405|ref|ZP_05774467.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
K5030]
gi|260876677|ref|ZP_05889032.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
AN-5034]
gi|260896630|ref|ZP_05905126.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
Peru-466]
gi|260900889|ref|ZP_05909284.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
AQ4037]
gi|731996|sp|P40610|NSRR_VIBPA RecName: Full=HTH-type transcriptional repressor nsrR
gi|507739|gb|AAA62191.1| unnamed ORF; similar to ORF 3' of E.coli PurA and ORF 5' of
Shigella flexneri VacB: Swiss-Prot Accession Number
P21498 [Vibrio parahaemolyticus]
gi|28807818|dbj|BAC61071.1| conserved hypothetical protein [Vibrio parahaemolyticus RIMD
2210633]
gi|149746852|gb|EDM57840.1| protein YjeB [Vibrio parahaemolyticus AQ3810]
gi|308086327|gb|EFO36022.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
Peru-466]
gi|308093960|gb|EFO43655.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
AN-5034]
gi|308106515|gb|EFO44055.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
AQ4037]
gi|308112892|gb|EFO50432.1| HTH-type transcriptional regulator NsrR [Vibrio parahaemolyticus
K5030]
Length = 141
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA +IT+ VV+ E + C C + +C L L KA +AF
Sbjct: 61 KNGGIRLMKPASEITVGGVVRDL-EPLDLVNCGVEF---CHITPACRLKDKLAKAKSAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L + +IE L+ + S + +
Sbjct: 117 AELDECTIESLLSDNSELLILL 138
>gi|291548060|emb|CBL21168.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
SR1/5]
Length = 142
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG++ L+ ++++ + IA IS +L +++ L KAG+V++VRG
Sbjct: 1 MKLSTRAKYGLKALIDLGLYSEKEAVSLQSIAGRQNISVSYLEQLMALLKKAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAF 118
GG L RPA++I++ D+++ E A C C C V ++ ++
Sbjct: 61 AAGGYFLGRPAEEISVGDILRVLEGGLEAATCPGTEGDGGCQGSDLCVAKLVWKRINDSI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
D + + L+ I +
Sbjct: 121 TDAVDTLMLSELIEESRRIHE 141
>gi|328472291|gb|EGF43161.1| transcriptional repressor NsrR [Vibrio parahaemolyticus 10329]
Length = 141
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 46/142 (32%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA +IT+ VV+ E + C C + +C L L KA AF
Sbjct: 61 KNGGIRLMKPASEITVGGVVRDL-EPLDLVNCGVEF---CHITPACRLKDKLAKAKRAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L + +IE L+ + S + +
Sbjct: 117 AELDECTIESLLSDNSELLILL 138
>gi|323494810|ref|ZP_08099908.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546]
gi|323310950|gb|EGA64116.1| hypothetical protein VIBR0546_19469 [Vibrio brasiliensis LMG 20546]
Length = 158
Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 3 AMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAY 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
I I V+ A +ES +C + K DC C ++ R + D L ++ L+
Sbjct: 63 SIAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGELM 120
Query: 132 RNRSSIK 138
++ ++
Sbjct: 121 KDNEVLE 127
>gi|330992598|ref|ZP_08316546.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329760797|gb|EGG77293.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 145
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/134 (33%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IR L+Y + I +IA+ IS+ L K++ L G+V RGR
Sbjct: 1 MRLTLHTDYSIRALIYLGQNPGRRVAIQEIADTHRISQNHLVKVINRLSTNGVVLARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV L QI I DVV+ E + C C L +C L + K++NAF
Sbjct: 61 NGGVELAHTPRQIVIGDVVRLMESDVSAIVSCIPGSGQQCILADACRLRKLFSKSMNAFM 120
Query: 120 DVLTQYSIECLVRN 133
VL + ++ ++ +
Sbjct: 121 AVLDRLTLHDMLCD 134
>gi|33415325|gb|AAQ18178.1| putative 15.3 kDa negative regulatory protein [Rhodobacter
capsulatus]
Length = 140
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL TD+ +R L++ A + ++ IS L K++Q LV G T++G
Sbjct: 1 MHLLASTDFALRALLFLATDPERLVNTETMSRDLGISRNHLQKVVQALVAGGFARTIKGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGGVRL PA +I I VV+ EE + CFA C + CGL VL A + ++D
Sbjct: 61 RGGVRLAHPATEIRIGAVVRHFEEHQPIVACFAPEGQ-CVIEPICGLKGVLAGAQSQYYD 119
Query: 121 VLTQYSIECLVRNRSSI 137
L Y++ +R +
Sbjct: 120 FLNGYTLADCLRRPRFL 136
>gi|163802753|ref|ZP_02196643.1| hypothetical protein 1103602000569_AND4_12699 [Vibrio sp. AND4]
gi|159173460|gb|EDP58282.1| hypothetical protein AND4_12699 [Vibrio sp. AND4]
Length = 141
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + +IT+ VV+ E + C C + +C L L +A AF
Sbjct: 61 KNGGIRLLKAPQEITVGGVVRDL-EPLDLVNCSVEF---CHITPACRLKEKLAQAKMAFM 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L +IE L+R+ S + +
Sbjct: 117 AELDGCTIEELLRDNSELLILL 138
>gi|253574913|ref|ZP_04852253.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845959|gb|EES73967.1| transcriptional regulator [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 145
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + YG+ ++M A + + P + IAE +SE +L +++ PL AG+V++VRG
Sbjct: 7 LKISTKGRYGLTIMMELAAKYGEGPTSLKSIAEKNQLSEHYLEQLIAPLRNAGLVKSVRG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + A +IT D+++ E + + + ++
Sbjct: 67 AYGGYILSKEASEITAGDIIRVLEGPISPVDFTEEDDPAK--------RDLWLRIRDSIA 118
Query: 120 DVLTQYSIECLVR 132
+VL ++E LV
Sbjct: 119 EVLDSTTLENLVN 131
>gi|170076761|ref|YP_001733399.1| rrf2 family protein (putative transcriptional regulator)
[Synechococcus sp. PCC 7002]
gi|169884430|gb|ACA98143.1| rrf2 family protein (putative transcriptional regulator)
[Synechococcus sp. PCC 7002]
Length = 147
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA+ + +L K+L + +AGI+ +VRG
Sbjct: 1 MKLTTRGHYSVKALLDISLQPGYGPTSVKAIAKRQNLPAPYLEKLLIEMRRAGILRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + I++ +++A E+ H S+ ++
Sbjct: 61 AQGGYQLLSKPEDISLGQILQAIGETIEPLPHHEPHP---DQAEDWVTFSLWQRLHQKLQ 117
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L ++ L + S K
Sbjct: 118 EALYNITLADLYYDARSWKA 137
>gi|219847295|ref|YP_002461728.1| BadM/Rrf2 family transcriptional regulator [Chloroflexus aggregans
DSM 9485]
gi|219541554|gb|ACL23292.1| transcriptional regulator, BadM/Rrf2 family [Chloroflexus aggregans
DSM 9485]
Length = 146
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 61/137 (44%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +YG+R + A H + P + IA I +L ++L L +AG+VE++RG
Sbjct: 1 MRISSKGEYGLRAVFDLAQHYGEGPIQSESIAIRQGIPVNYLNQLLITLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R + I++L+V+ E E + + V +
Sbjct: 61 PQGGHLLARSPETISLLEVLTVLEGPILPTEGGRDDLQPTEPLDRALIDEVWSELRTLIE 120
Query: 120 DVLTQYSIECLVRNRSS 136
L +++ L + + S
Sbjct: 121 QRLAGLTLDDLCQRKRS 137
>gi|91227445|ref|ZP_01261809.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01]
gi|91188595|gb|EAS74886.1| hypothetical protein V12G01_15050 [Vibrio alginolyticus 12G01]
Length = 141
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L++ A + D I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIFLASLPEDELTSITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA +IT+ VV+ E + C C + +C L L KA +AF
Sbjct: 61 KNGGIRLMKPASEITVGGVVRDL-EPLDLVNCGVDF---CHITPACRLKDKLAKAKSAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L +IE L+ + S + +
Sbjct: 117 AELDDCTIESLLSDNSELLILL 138
>gi|257414160|ref|ZP_04745427.2| iron-sulfur cluster assembly transcription factor IscR [Roseburia
intestinalis L1-82]
gi|257201011|gb|EEU99295.1| iron-sulfur cluster assembly transcription factor IscR [Roseburia
intestinalis L1-82]
Length = 130
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 2/124 (1%)
Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A++N P + IA IS+ +L +I+ L KA V+++RG +GG L + ++
Sbjct: 1 MLDLALNNTGEPISLKDIARRQEISDKYLEQIISVLNKAKYVKSIRGAQGGYILTKRPEE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
T+ +++ TE S C C + C V +K A V+ ++ LV
Sbjct: 61 YTVGMILRLTEGSLAPVACVEDED-TCDKMNDCATVLVWKKMNEAINQVVDSITLADLVD 119
Query: 133 NRSS 136
Sbjct: 120 YERQ 123
>gi|326776682|ref|ZP_08235947.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf.
griseus XylebKG-1]
gi|326657015|gb|EGE41861.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces cf.
griseus XylebKG-1]
Length = 148
Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD +RVLM A+ + P ++A + K++ L G+++ RG
Sbjct: 1 MRLTRFTDVALRVLMRLAVADGREPPTTREVAATMRVPYTHTAKVVARLQHLGLLDARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L I +V+ E V EC CPL +C L LR A AF+
Sbjct: 61 RGGGLTLTPAGRSTPIGPLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQEAFY 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV + +
Sbjct: 119 AALDPITVTDLVASPT 134
>gi|172058089|ref|YP_001814549.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171990610|gb|ACB61532.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 136
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + P + +IA+ +SE +L +++ PL G+V++VRG
Sbjct: 2 MKISTKGRYGLTIMIALAKGGEAKPLSLKKIAQMYDLSEHYLEQLIAPLRNGGLVKSVRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A++IT D+++ E V E +C V + K +A
Sbjct: 62 AYGGYKLGRSAEEITAGDIIRLLEGPLVVVE-----GDNCDEVTK---RKLWDKIQSAVD 113
Query: 120 DVLTQYSIECLVRNRS 135
VL +++ L
Sbjct: 114 QVLDTTTLKDLAEEDD 129
>gi|237808576|ref|YP_002893016.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
9187]
gi|237500837|gb|ACQ93430.1| transcriptional regulator, BadM/Rrf2 family [Tolumonas auensis DSM
9187]
Length = 154
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R LM+ A + + + +I+ IS + K++ LV G + +VRG
Sbjct: 1 MKLTTYTDYGLRTLMFMACLSPGARSSVVEISNYYDISRNHMVKVVVQLVSLGYLSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L R I I V++ E + +C + C LV C LT+ L+ + AF
Sbjct: 61 KNGGITLARLPRDIRIGQVIRDLESNLNGVDCGSPG---CKLVPVCRLTNALKVGMEAFL 117
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ ++++ LV N I I
Sbjct: 118 AAMDEFTLSDLVNNADQIIAIL 139
>gi|297617120|ref|YP_003702279.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Syntrophothermus lipocalidus DSM 12680]
gi|297144957|gb|ADI01714.1| transcriptional regulator, BadM/Rrf2 family [Syntrophothermus
lipocalidus DSM 12680]
Length = 133
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++T+Y +RV++ A + +I+E I E+FL K +Q L +AG+V T RG
Sbjct: 1 MQITRQTEYAVRVMLELARLPKGEMLSAREISEKQQIPEVFLKKTIQILARAGLVHTQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGGV+L + ++T+ D++ A E + C +C C + VL +A A
Sbjct: 61 PRGGVQLAKDPTEVTLADILVAVEGPLALNVCLVPG-YECVNKPDCKVHRVLARAQKALV 119
Query: 120 DVLTQYSIECLVR 132
L+ S+ L
Sbjct: 120 SELSCNSLAELAE 132
>gi|119505399|ref|ZP_01627473.1| rrf2 family protein [marine gamma proteobacterium HTCC2080]
gi|119458854|gb|EAW39955.1| rrf2 family protein [marine gamma proteobacterium HTCC2080]
Length = 138
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 3/128 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ AI+ + P ++ I+ IS +L ++ L + +V +VRG GG RL R
Sbjct: 1 MLDLAINGEEKPVSLADISGRQEISLSYLEQLFAKLRREALVTSVRGPGGGYRLARDRAT 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ + +++ A +ES V C + K +C C + + + L+ S+ LV
Sbjct: 61 LFVAEIIDAVDESVDVTNC--NGKGNCHHGEVCLTHDLWQDLSDRIHSFLSGISLADLVD 118
Query: 133 NRSSIKKI 140
NR+ ++
Sbjct: 119 NRAGKARL 126
>gi|288906317|ref|YP_003431539.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
gi|306832374|ref|ZP_07465527.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325979331|ref|YP_004289047.1| BadM/Rrf2 family transcriptional regulator [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|288733043|emb|CBI14624.1| putative transcriptional regulator [Streptococcus gallolyticus
UCN34]
gi|304425414|gb|EFM28533.1| Rrf2 family transcriptional regulator [Streptococcus gallolyticus
subsp. gallolyticus TX20005]
gi|325179259|emb|CBZ49303.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 133
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ R Y IRV++ +N + + IA+ IS+ +L I++ +V ++ GR
Sbjct: 2 ISTRGRYAIRVMIDLVENNNGHYIPLKDIAKRQEISKKYLEIIVKEMVAGELLIGASGRG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L R ++ T+ +++ E + C A DCP C + + N D
Sbjct: 62 GGYKLRRKPEEYTVGEILDLMEGTLSSVACLADKSFDCPRKDKCKTLPMWTEYDNLVHDF 121
Query: 122 LTQYSIECLVRN 133
+I LV N
Sbjct: 122 FYGKTILDLVNN 133
>gi|239944195|ref|ZP_04696132.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
15998]
Length = 148
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD +RVLM A+ ++A + K++ L G+++ RG
Sbjct: 1 MRLTRFTDVALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L +I +V+ E V EC CPL +C L LR A +AF+
Sbjct: 61 RGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFY 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV + +
Sbjct: 119 AALDPITVADLVASPT 134
>gi|83310381|ref|YP_420645.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82945222|dbj|BAE50086.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 128
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TD+ IR+L+Y + H D + ++AE IS L KI++ L + G ++TVRG+
Sbjct: 1 MKITQFTDFSIRLLIYLSRHPDRVVTVREVAEYYDISAEHLKKIVRSLAELGHIQTVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R I + + + +E+ + C CP+ C L ++ AL AF
Sbjct: 61 HGGLRLGREPQAIDLGHLFRQ-QENLALLPCHEP-CDSCPI-ADCRLRGLVDSALAAFLA 117
Query: 121 VLTQYSIECLV 131
V ++ ++
Sbjct: 118 VFDGKTLADVI 128
>gi|53803301|ref|YP_114917.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
gi|53757062|gb|AAU91353.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
Length = 150
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 73/130 (56%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD+ +RVL+Y + I +IAE IS L K++ L AG++ T+RG
Sbjct: 1 MQLTQFTDFSLRVLIYLVRLPEPGMATIPEIAEYYRISRNHLVKVVNTLANAGLLVTMRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL RPAD ITI +VV+ TE + + ECF C + C L ++L +A F
Sbjct: 61 KGGGLRLARPADTITIAEVVRLTEPNMNLVECFDPKASHCRIDRGCFLKAILYEARKDFL 120
Query: 120 DVLTQYSIEC 129
L ++++
Sbjct: 121 AALERHTLAD 130
>gi|254393536|ref|ZP_05008671.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
gi|326439617|ref|ZP_08214351.1| rrf2 family protein, putative transcriptional regulator
[Streptomyces clavuligerus ATCC 27064]
gi|197707158|gb|EDY52970.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC
27064]
Length = 150
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD +R+ M A+H+D P ++A A + K++ L G+VE RG
Sbjct: 1 MRLTKGTDLALRIAMRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L +I +V+ E + V C CPL +C L SVLR A AF+
Sbjct: 61 RGGGLALTTAGRTGSIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFY 118
Query: 120 DVLTQYSIECLVRNRS 135
L Y+++ LV + +
Sbjct: 119 TALDPYTVDDLVASPT 134
>gi|302336476|ref|YP_003801683.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
7084]
gi|301320316|gb|ADK68803.1| transcriptional regulator, BadM/Rrf2 family [Olsenella uli DSM
7084]
Length = 163
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++++TDY +R+L + +E I F I LV+AGI+E+ RG
Sbjct: 1 MDISRKTDYALRMLSELVRSEGGIISVRAASEKDNIPYSFARSIQHDLVRAGIIESTRGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
RGG+RL + T+ VV+A + +++ C H+ CP C + +A
Sbjct: 61 RGGMRLAVDPRRTTVRQVVEAIQGPIYISSCDTVGGHEGPCPFRSECHYNPIWCEAERIL 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
D ++ +V + + G
Sbjct: 121 RDYFDSVTLYQVVCEHK--HPMLDEG 144
>gi|269961409|ref|ZP_06175773.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
gi|269833786|gb|EEZ87881.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
Length = 141
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + + I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIYLASLPKEELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + +IT+ VV+ E + C C + +C L L KA AF
Sbjct: 61 KNGGIRLLKAPKEITVGGVVRDL-EPLDLVNCSVEF---CHITPACRLKEKLAKAKMAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L +IE L+ + S + +
Sbjct: 117 AELDGCTIEELLSDNSELLILL 138
>gi|153835424|ref|ZP_01988091.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi
HY01]
gi|156972466|ref|YP_001443373.1| transcriptional repressor NsrR [Vibrio harveyi ATCC BAA-1116]
gi|189030890|sp|A7MX86|NSRR_VIBHB RecName: Full=HTH-type transcriptional repressor nsrR
gi|148868029|gb|EDL67214.1| putative HTH-type transcriptional regulator YhdE [Vibrio harveyi
HY01]
gi|156524060|gb|ABU69146.1| hypothetical protein VIBHAR_00086 [Vibrio harveyi ATCC BAA-1116]
Length = 141
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + D I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIYLASLPKDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL + +IT+ VV+ E + C C + +C L L KA AF
Sbjct: 61 KNGGIRLMKAPQEITVGGVVRDL-EPLDLVNCSVEF---CHITPACRLKEKLAKAKLAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L +IE L+ + S + +
Sbjct: 117 AELDDCTIEELLSDNSELLILL 138
>gi|16800618|ref|NP_470886.1| hypothetical protein lin1550 [Listeria innocua Clip11262]
gi|16414037|emb|CAC96781.1| lin1550 [Listeria innocua Clip11262]
Length = 140
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++IT D+++ E + E + + + NA
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEA--------AQRELWTRMRNAVR 112
Query: 120 DVLTQYSIECLVRN 133
DVL Q ++ L+++
Sbjct: 113 DVLDQTTLSDLLKH 126
>gi|186683177|ref|YP_001866373.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186465629|gb|ACC81430.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
73102]
Length = 146
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA+ I +L K+L + +A IV+++RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPVSVRAIAKRQDIPAPYLEKLLIEMRRASIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R QI+I +++A E+ + H S+ ++
Sbjct: 61 SIGGYQLAREPAQISIGQILEAVGETSHL----PHHTPAPTQAEDWVTFSLWQRLNQKLK 116
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L ++ L + S +
Sbjct: 117 EALYSITLADLYYDARSWQASLG 139
>gi|163740100|ref|ZP_02147503.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis
BS107]
gi|161386649|gb|EDQ11015.1| hypothetical protein RGBS107_20388 [Phaeobacter gallaeciensis
BS107]
Length = 149
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L +TDY +R+L+ A + I ++ + + KI+ LV+ G V ++RGR
Sbjct: 1 MKLNLKTDYALRLLILLATRPEQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV++ R +I + D+V A E + +C + C LVG+C L VL +A AF +
Sbjct: 61 SGGVQIGRKPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115
Query: 121 VLTQYSIECLVRNRSS-IKKIFN 142
VL Y + L+ + + + +
Sbjct: 116 VLMAYRLSDLIEAPAPVLTPLLD 138
>gi|163743460|ref|ZP_02150839.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10]
gi|161383290|gb|EDQ07680.1| hypothetical protein RG210_00260 [Phaeobacter gallaeciensis 2.10]
Length = 149
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 73/143 (51%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L +TDY +R+L+ A D I ++ + + KI+ LV+ G V ++RGR
Sbjct: 1 MKLNLKTDYALRLLILLATRPDQQFEIETLSRIHQLPASSVMKIISELVRHGYVHSIRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV++ R +I + D+V A E + +C + C LVG+C L VL +A AF +
Sbjct: 61 SGGVQIGREPSEIRVGDIVHAMNEPMEIVDCSS-----CLLVGNCRLKGVLCEAAQAFTE 115
Query: 121 VLTQYSIECLVRNRSS-IKKIFN 142
VL Y + L+ + + + +
Sbjct: 116 VLMAYRLSDLIEAPAPVLTPLLD 138
>gi|260429630|ref|ZP_05783607.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45]
gi|260420253|gb|EEX13506.1| HTH-type transcriptional regulator NsrR [Citreicella sp. SE45]
Length = 150
Score = 108 bits (271), Expect = 2e-22, Method: Composition-based stats.
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 5/129 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL+K TDY +RV +Y H D IS+I A +S+ L K++Q LV+ G +++ RGR
Sbjct: 1 MHLSKFTDYALRVCLYLGAHQDRVVPISEITRAHGLSQSNLMKVVQQLVEGGFLKSTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L RPA +I + +V + E + +C C L+G+CGL L +A NAF+
Sbjct: 61 SGGVTLARPAAEIRVGEVARFMEGDSGLVDCS-----TCILIGACGLVRGLNEAKNAFYQ 115
Query: 121 VLTQYSIEC 129
L + S+
Sbjct: 116 SLDRSSLAD 124
>gi|253700358|ref|YP_003021547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacter sp. M21]
gi|251775208|gb|ACT17789.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
Length = 153
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T YG++ L+Y A D P I+ +A + + FL IL L GI+++ +G+
Sbjct: 2 ISKKTKYGLKALIYLARRYDKGPILIADLARDENLPKKFLENILLSLKNNGILQSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L R +IT V+ E C + +C +CG+ V++ +A
Sbjct: 62 GGYYLGRHPSKITFGQAVRVMEGPLAPVPCVSETAYAKCTECENEVTCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRN 133
+L ++ ++
Sbjct: 122 MAVILDGTTLADVLEK 137
>gi|258405006|ref|YP_003197748.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
retbaense DSM 5692]
gi|257797233|gb|ACV68170.1| transcriptional regulator, BadM/Rrf2 family [Desulfohalobium
retbaense DSM 5692]
Length = 163
Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R+ YGIR+++ A P + +A+ IS +L K+ + L ++G + + G
Sbjct: 1 MRLSTRSRYGIRLMLDIAQQGQHGPVALRDVADRQDISLKYLEKLSRRLRESGFLMSRLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RPA +ITI +++++ E + +C+ K C V C S+ +
Sbjct: 61 AKGGYVLGRPAAEITIKELIESLEGHVGLVQCWLEEKA-CSRVDQCLAYSLWARINEVLA 119
Query: 120 DVLTQYSIECLVRNRS 135
L ++ ++
Sbjct: 120 RELNAITLADMLFENR 135
>gi|328544668|ref|YP_004304777.1| Rhizobial iron transcriptional regulator protein [polymorphum
gilvum SL003B-26A1]
gi|326414410|gb|ADZ71473.1| Rhizobial iron transcriptional regulator protein [Polymorphum
gilvum SL003B-26A1]
Length = 146
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 1/145 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T+RTD +R+L++ A+H + +I + + +Q L + G + + GR
Sbjct: 1 MRFTERTDIAVRLLLFLALHKGAKLSVDEIVDRYLGHRSQVVAAIQDLRRGGYIGSSPGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
GGV L R A +IT+ ++V+ E F + CF K C + C L +AL +FF
Sbjct: 61 SGGVWLVRSAHEITLAEIVRMFETDFHLTRCFKDGVKARCLIYDVCVFKQALERALGSFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
VL + +I L+ + + ++ G
Sbjct: 121 AVLEETTIADLIEDEGRMLQVMEMG 145
>gi|256545144|ref|ZP_05472510.1| iron-sulfur cluster assembly transcription factor IscR
[Anaerococcus vaginalis ATCC 51170]
gi|256399185|gb|EEU12796.1| iron-sulfur cluster assembly transcription factor IscR
[Anaerococcus vaginalis ATCC 51170]
Length = 134
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 68/135 (50%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + Y A + D +S I+ A + E +L ++++ L + +V + RG
Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNALKLPENYLEQLIRILKRNNLVISARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R + +IT+ DV++ E +EC A + +C C V K +A
Sbjct: 61 AKGGYKLSRNSSEITVGDVLRVLEGEMTSSECVAD-RNNCNNSE-CEAYYVFAKIDDAIN 118
Query: 120 DVLTQYSIECLVRNR 134
+ +I+ +V +
Sbjct: 119 KAVNSITIKDMVNEK 133
>gi|114327990|ref|YP_745147.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
gi|114316164|gb|ABI62224.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
Length = 179
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHND----YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
L+K TDY + VL+ A + IA A + E + K+L+ L +V +
Sbjct: 6 RLSKLTDYAVVVLIRLAAESGEASGRVQTAPCIAAATGVPEPTVAKVLKALSVGRLVVSQ 65
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG RL R DQI+I DV++ E + C DC C + +A
Sbjct: 66 RGAHGGYRLNRFLDQISIADVIRVLEGPIALTACVEGAHPDCEAACLCPMRGRWDMVNHA 125
Query: 118 FFDVLTQYSIECLVRNR 134
L+ S+ + R
Sbjct: 126 IATALSSISLADMARQP 142
>gi|291447666|ref|ZP_06587056.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291350613|gb|EFE77517.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 156
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD +RVLM A+ ++A + K++ L G+++ RG
Sbjct: 9 MRLTRFTDVALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRG 68
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L +I +V+ E V EC CPL +C L LR A +AF+
Sbjct: 69 RGGGLTLTSAGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFY 126
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV + +
Sbjct: 127 AALDPITVADLVASPT 142
>gi|291562421|emb|CBL41237.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
bacterium SS3/4]
Length = 147
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 1/128 (0%)
Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
+++ A H +D + IA +S+ +L +I+ L K G++ T RG +GG +L +
Sbjct: 1 MVIDLAEHADDGFISLKDIAARQGLSKKYLEQIVPLLNKTGMLSTTRGYQGGYKLAKSPS 60
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
+ T+ +++ TE S C C +C V D L +I+ ++
Sbjct: 61 ECTVGAILQTTEGSLAPVSCLEHTPNPCERCSACDTLPVWEGLNRVIMDYLDGITIQTIL 120
Query: 132 RNRSSIKK 139
+ +++
Sbjct: 121 DQKHELEE 128
>gi|220904349|ref|YP_002479661.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868648|gb|ACL48983.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 147
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + RT YG+R L+ A ++ Q+A IS +L +I++ L GI+ VRG
Sbjct: 1 MRFSTRTRYGLRFLLRLAAQPQGSLLQLGQVAREENISSGYLEQIVRALRPMGILRAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +P +I + +V + E C + + C C +
Sbjct: 61 SGGGYALAKPPAEINMEEVFQHLEGEISPVRCLSKGR-SCQREKQCSTREFWSELDGHIR 119
Query: 120 DVLTQYSIECLVRNRS 135
L Q +++ ++ +
Sbjct: 120 SFLQQRTLQEIIESEK 135
>gi|116622605|ref|YP_824761.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116225767|gb|ABJ84476.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
usitatus Ellin6076]
Length = 141
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ DY +R++++ A + +D + +A AC I E F+ KILQ L ++G++ + RG
Sbjct: 1 MQLTRAADYAVRMMIHLATLPSDSRTNRAALAAACEIPEPFVGKILQTLTRSGLIASHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +P +++LDV++A E + C C C V +A +A
Sbjct: 61 VNGGFGLTQPPTAVSLLDVIEAVEGPTLLNICIRPGD-SCARKSWCPAHPVWVEAQHAMT 119
Query: 120 DVLTQYSIECLVR 132
VL + ++ L +
Sbjct: 120 AVLGRATLASLAQ 132
>gi|90579379|ref|ZP_01235189.1| hypothetical transcriptional regulator [Vibrio angustum S14]
gi|90440212|gb|EAS65393.1| hypothetical transcriptional regulator [Vibrio angustum S14]
Length = 158
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ + P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSHNGPVPLADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A +ES +C DC C ++ L ++ L++
Sbjct: 61 IAVGMVIAAVDESVDATKCHGKG--DCQGGARCLTHTLWHDLSERISGFLNNITLGELMK 118
Query: 133 NRS 135
+
Sbjct: 119 DND 121
>gi|121997026|ref|YP_001001813.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
halophila SL1]
gi|121588431|gb|ABM61011.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
halophila SL1]
Length = 158
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + +M A++ D P +++I+ IS +L ++ + + G+V VRG
Sbjct: 1 MRLSTKGRYAVTAMMELALNTDKGPVTLAEISHTQGISLSYLEQLFARMRRDGLVVGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPA +I++ ++ A +E + D C + +
Sbjct: 61 PGGGYRLARPAGEISVAQIITAVDEGTAQGQGVGEGSSD---DDRCLTHDLWVDLSRQIY 117
Query: 120 DVLTQYSIECLVRN 133
D L ++E + R+
Sbjct: 118 DFLNGITLEQMARD 131
>gi|121997341|ref|YP_001002128.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
halophila SL1]
gi|121588746|gb|ABM61326.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
halophila SL1]
Length = 150
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 63/130 (48%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ + + TDYG+ +L A +Q+A A + + + K+++ LV AG++ + RG
Sbjct: 2 LRINRETDYGVVILSAMARRPGERVNAAQLAGAHGLPQPMVSKVMKQLVHAGLLCSYRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L RP ++I++ +V++A E EC S C V C ++ + +
Sbjct: 62 KGGYGLARPPEEISVAEVIEALEGPIAFTECVESGTDTCTHVEDCNASAAWSRISSVVRQ 121
Query: 121 VLTQYSIECL 130
L S+ +
Sbjct: 122 ALAAVSLAEM 131
>gi|297193473|ref|ZP_06910871.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
gi|197718251|gb|EDY62159.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC
25486]
Length = 147
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD +R +M A + P ++AE + + K + L G++E RG
Sbjct: 1 MRLTKFTDLALRAVMRLAVLEQGGPLTTREVAEEMNVPYAHMAKAIARLQHLGVLEARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L + ++ +V+ E V C CPL G+C L LR A AF
Sbjct: 61 RGGGLELTVLGRRASVGWLVRELEGEGEVVAC--EGDAPCPLRGACRLRRALRDAQEAFH 118
Query: 120 DVLTQYSIECLVRNR 134
L ++ LV +
Sbjct: 119 ATLDPLTVADLVASP 133
>gi|50084582|ref|YP_046092.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Acinetobacter sp. ADP1]
gi|49530558|emb|CAG68270.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Acinetobacter sp. ADP1]
Length = 147
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L+ A+ + +++IA IS +L ++ L + G+V +VRG GG L R A
Sbjct: 3 ALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARHAT 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
+IT+L++++A E+ C HK +C C + ++ + D L + ++ L+
Sbjct: 63 EITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLADLI 120
Query: 132 RNRS 135
+
Sbjct: 121 ARDN 124
>gi|301065061|ref|ZP_07205404.1| transcriptional regulator, Rrf2 family [delta proteobacterium
NaphS2]
gi|300440829|gb|EFK05251.1| transcriptional regulator, Rrf2 family [delta proteobacterium
NaphS2]
Length = 139
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +Y +R ++Y + ++AE I FL KI Q L K G++E +G
Sbjct: 1 MRLTRAGEYAVRCVLYLSKKGKGALVSRKEVAEQAVIPSHFLAKIAQELAKVGMIEIRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L ++IT+L VV+ F+ +C K C +C + V +A +
Sbjct: 61 AKGGFVLLMDPEEITLLQVVEIVIGEIFLNDCVVRPK-SCDASPNCSVHVVWMRARDQLR 119
Query: 120 DVLTQYSIECLVR 132
D L + L++
Sbjct: 120 DTLGSVTFAELIK 132
>gi|239931665|ref|ZP_04688618.1| hypothetical protein SghaA1_25822 [Streptomyces ghanaensis ATCC
14672]
gi|291440032|ref|ZP_06579422.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291342927|gb|EFE69883.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 151
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +RVLM A+ +A A + K++ L G++ RGR
Sbjct: 1 MRLLRSTDLALRVLMRLAVAGGSQPTTRDVAAAMDVPYTHAAKVVADLRHRGLLTARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAFF 119
GG+ L ++ +V+A E V +C CPL C L LR+A AFF
Sbjct: 61 GGGLTLTEKGRGASVGALVRAFEGEGDVVDCEGGSATAPCPLRSDCRLRGALRRAQEAFF 120
Query: 120 DVLTQYSIECLVRNRS 135
L ++ L + +
Sbjct: 121 ASLDPITVADLAADPT 136
>gi|226363500|ref|YP_002781282.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
gi|226241989|dbj|BAH52337.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
Length = 165
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T + DY +R L+ A P++ +A++ I FL +L L + G+V + RG
Sbjct: 1 MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA+ ITI DV++ E +D + L V
Sbjct: 61 DGGYWLARPAEDITIADVIRTVEGPLASVRGERPEDVDYC-GPAAKLQDVWIAVRVNLRA 119
Query: 121 VLTQYSIECLVRNR 134
VL S+ + +
Sbjct: 120 VLENVSLADVANGQ 133
>gi|111021140|ref|YP_704112.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110820670|gb|ABG95954.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length = 165
Score = 108 bits (270), Expect = 3e-22, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T + DY +R L+ A P++ +A++ I FL +L L + G+V + RG
Sbjct: 1 MHITAKVDYAVRTLIELAAAGPSPSKAEFLAQSQTIPHKFLEAVLADLRRGGLVNSRRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA+ ITI DV++ E +D + L V
Sbjct: 61 DGGYWLARPAEDITIADVIRTVEGPLASVRGERPEDVDYC-GPAAKLQDVWIAVRVNLRA 119
Query: 121 VLTQYSIECLVRNR 134
VL S+ + +
Sbjct: 120 VLENVSLADVANGQ 133
>gi|237740315|ref|ZP_04570796.1| rrf2 family protein [Fusobacterium sp. 2_1_31]
gi|262068259|ref|ZP_06027871.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693]
gi|229422332|gb|EEO37379.1| rrf2 family protein [Fusobacterium sp. 2_1_31]
gi|291377997|gb|EFE85515.1| RRF2 family protein [Fusobacterium periodonticum ATCC 33693]
Length = 141
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R
Sbjct: 1 MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115
G GG +L QI + + K ++ V +C + + +C +CG T + +
Sbjct: 61 GPTGGYKLTLKPSQINLYTIYKILDDEERVIDCNENAEGKAHNCN-EEACGETCIWSRLD 119
Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
NA +L++ S+E ++N I
Sbjct: 120 NAMTKILSETSLEDFIKNGKKI 141
>gi|209548376|ref|YP_002280293.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209534132|gb|ACI54067.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 148
Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLV--RNRSSIKKIF 141
VL +I V R+ + + ++
Sbjct: 122 TRKVLFSTTIADAVGPRHGAEVTRLL 147
>gi|148654472|ref|YP_001274677.1| BadM/Rrf2 family transcriptional regulator [Roseiflexus sp. RS-1]
gi|148566582|gb|ABQ88727.1| transcriptional regulator, BadM/Rrf2 family [Roseiflexus sp. RS-1]
Length = 146
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +YG+R L+ A + P + I I E +L +IL L +A ++E++RG
Sbjct: 1 MRISSKGEYGLRALLDLAQRVGEGPIQSHDIHLRQGIDENYLNQILILLRRARLIESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R QIT+LD + A E A+ + + V A
Sbjct: 61 PQGGHRLARHPSQITVLDALLALEGPLLAADSGRDAPTPTEPMDRELVREVWDGAREMLE 120
Query: 120 DVLTQYSIECLVRNRSS 136
L ++E L + ++
Sbjct: 121 RYLASITLEDLCQRKAQ 137
>gi|46580376|ref|YP_011184.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|120602251|ref|YP_966651.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
DP4]
gi|46449793|gb|AAS96443.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|120562480|gb|ABM28224.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
DP4]
gi|311233649|gb|ADP86503.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
RCH1]
Length = 173
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ Y R+L+ A H P S++A+ IS F+ KI++ L AG+V +VR
Sbjct: 1 MRISSTVHYASRLLVNLAQHTPAAGPVSASELADRTGISVKFIEKIIRQLRTAGMVRSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L + +T+ DV++ E C DC C + A A
Sbjct: 61 GATGGHLLSMRPEDVTLGDVLRVVEGGVQPPNCCVGD--DCEDTP-CRCKTAWISAAKAL 117
Query: 119 FDVLTQYSIECLV 131
L QY++ ++
Sbjct: 118 EATLDQYTLADIM 130
>gi|299535694|ref|ZP_07049015.1| putative HTH-type transcriptional regulator [Lysinibacillus
fusiformis ZC1]
gi|298728894|gb|EFI69448.1| putative HTH-type transcriptional regulator [Lysinibacillus
fusiformis ZC1]
Length = 139
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P +I+ V+ E E + + + + +A
Sbjct: 61 AYGGYMLANPPSEISAAHVISVLEGPIQPVEGIENEEAP--------QRELWLRIRDAVK 112
Query: 120 DVLTQYSIECLVR 132
+VL +IE L +
Sbjct: 113 NVLDTTTIEDLAQ 125
>gi|126653988|ref|ZP_01725823.1| YrzC [Bacillus sp. B14905]
gi|169829331|ref|YP_001699489.1| putative HTH-type transcriptional regulator [Lysinibacillus
sphaericus C3-41]
gi|126589505|gb|EAZ83648.1| YrzC [Bacillus sp. B14905]
gi|168993819|gb|ACA41359.1| Putative HTH-type transcriptional regulator [Lysinibacillus
sphaericus C3-41]
Length = 139
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + +IA +SE +L +++ PL +G+V++VRG
Sbjct: 1 MKISTKGRYGLTIMIELAKHYGEGPIPLRKIAAEKELSEAYLEQLVSPLRNSGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P +I+ V+ E E + + + + +A
Sbjct: 61 AYGGYMLANPPSEISAAHVISVLEGPIQPVEGIENEEAP--------QRELWLRIRDAVK 112
Query: 120 DVLTQYSIECLVR 132
+VL +IE L +
Sbjct: 113 NVLDTTTIEDLAQ 125
>gi|261252066|ref|ZP_05944639.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891]
gi|260935457|gb|EEX91446.1| iron-sulfur cluster regulator IscR [Vibrio orientalis CIP 102891]
Length = 155
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAYS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I I V+ A +ES +C + K DC C ++ R + D L ++ L++
Sbjct: 61 IAIGTVIAAVDESVDATKC--NGKGDCQGGSRCLTHTLWRDLSSRISDFLNNITLGELMK 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|302560986|ref|ZP_07313328.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
gi|302478604|gb|EFL41697.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
Length = 160
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +RVLM A+ D ++AEA + K++ L G++ RGR
Sbjct: 13 MRLLRSTDLALRVLMRLAVAGDSSPTTREVAEAMDVPYTHAAKVVAELQHMGLLTARRGR 72
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
GG+ L ++ +V++ E V +C + CPL +C L LR+A AFF
Sbjct: 73 GGGLSLTEDGRAASVGALVRSFEGDGDVVDCEGTATSPACPLSSACRLRGALRRAQEAFF 132
Query: 120 DVLTQYSIECLVRNRS 135
L ++ +V + +
Sbjct: 133 ATLDPVTVADIVTDPT 148
>gi|116622770|ref|YP_824926.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116225932|gb|ABJ84641.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
usitatus Ellin6076]
Length = 147
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ DY +RV+++ A + S+++ + E FL K+LQ L + G++ + RG
Sbjct: 1 MQLTRAADYAVRVMIHLAGLPPGTRVSRSELSTSAECPEQFLCKVLQSLTRVGLIASHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++L+VV+A E + C +H C C V +A A
Sbjct: 61 NTGGFELEERHRSASVLEVVQAIEGPIHLNVCL-NHDHGCSRQSWCPAHDVWAEAQRALN 119
Query: 120 DVLTQYSIECLVR 132
+VL +I +
Sbjct: 120 EVLGHATISGMAH 132
>gi|218463759|ref|ZP_03503850.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli
Kim 5]
Length = 148
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 65/146 (44%), Gaps = 7/146 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCEIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLV--RNRSSIKKIF 141
VL +I V R + + ++
Sbjct: 122 TRKVLFSTTIADAVGPRQGAEVTRLL 147
>gi|116251030|ref|YP_766868.1| Rrf2 family transcriptional regulator [Rhizobium leguminosarum bv.
viciae 3841]
gi|115255678|emb|CAK06759.1| putative Rrf2 family transcriptional regulator [Rhizobium
leguminosarum bv. viciae 3841]
Length = 148
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L G+V + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL +I + + S
Sbjct: 122 TRKVLFSTTIADAIAPKHS 140
>gi|226227389|ref|YP_002761495.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27]
gi|226090580|dbj|BAH39025.1| Rrf2 family DNA-binding protein [Gemmatimonas aurantiaca T-27]
Length = 163
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T +YG+ ++ A + P +A + ++ +IL + +AGIV + RG
Sbjct: 1 MRITTWAEYGLICALHLARRGETGPVTGRDVATRERLPGDYVEQILLRMRRAGIVNSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNA 117
RGG L R +I++ DV++A+E + F C + C +C + V
Sbjct: 61 ARGGYMLARKPSEISVRDVIQASELTTFDLHCVSHPVDAGRCSESENCSIRPVWMLLQQR 120
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+VL + L+ + S ++
Sbjct: 121 IDEVLEGVKLSDLLADESVVRD 142
>gi|296447558|ref|ZP_06889480.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
gi|296254946|gb|EFH02051.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
Length = 153
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 8/145 (5%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ ++Y A ++ IA A I + FL IL L AG V + +G+
Sbjct: 2 LTKKAKYGLKAMVYLAGFEPGRTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L RP + I + V++ + +C + DC C + V+ +A +A
Sbjct: 62 GGYTLARPPEDIRVGAVIRVLDGPLAPIQCASRTVYRRCDDCENEALCTVRLVMVEARDA 121
Query: 118 FFDVLTQYSIEC---LVRNRSSIKK 139
+VL ++ L ++
Sbjct: 122 IANVLDNRTLAQMRALAEAPQPLEA 146
>gi|291518758|emb|CBK73979.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio
fibrisolvens 16/4]
Length = 133
Score = 108 bits (269), Expect = 4e-22, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + Y +RV++ + + + + IAE IS+ +L I++ LV G V+ V G+
Sbjct: 2 FSTKGRYALRVMIDLSQQNPEEYIPLKDIAERQDISKKYLEIIVKELVHGGFVKGVSGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L R ++ ++ ++++ E S C A ++CP G C + + D
Sbjct: 62 GGYQLTRKPEEYSVGEIIELMEGSLSPVACLADENMECPREGICKTLPMWTEFYMLERDF 121
Query: 122 LTQYSIECLVR 132
+ LV
Sbjct: 122 FYGKKLSDLVN 132
>gi|182677317|ref|YP_001831463.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182633200|gb|ACB93974.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 180
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
HLT +YGI L++ D I ++AE IS FL KI L KAGIV G R
Sbjct: 3 HLTISVEYGIHCLLWLVGSGDTAMSIRELAELQGISPSFLAKIFPKLEKAGIVAASEGVR 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL R ++I+ LD+V A E + +C FA + + G C + V+
Sbjct: 63 GGYRLGRSPEEISFLDIVDAIEGHKPLFDCQEVRERCALFAGKPPEWAMKGVCAIHGVML 122
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A A D L ++ +
Sbjct: 123 QAEKAMRDSLASQTLADVAA 142
>gi|329934735|ref|ZP_08284776.1| putative transcriptional regulator of sulfate adenylyltransferase,
Rrf2 family [Streptomyces griseoaurantiacus M045]
gi|329305557|gb|EGG49413.1| putative transcriptional regulator of sulfate adenylyltransferase,
Rrf2 family [Streptomyces griseoaurantiacus M045]
Length = 152
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R ++ A P + +AE IS FL IL L + G+V + RG
Sbjct: 1 MRISARADYAVRAVVELAVRQGGGPVKAEAVAEVQDISHKFLEGILGDLRRGGLVASRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A+ IT+ D+++A + ++ + L +
Sbjct: 61 GNGGYRLAREAEAITVADIIRAVDGPIVSVRGERPTQLKYT-GPAEPLLPLWIALRANVR 119
Query: 120 DVLTQYSIECLVR 132
+VL ++ L
Sbjct: 120 EVLEGVTVADLAA 132
>gi|294782591|ref|ZP_06747917.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA]
gi|294481232|gb|EFG29007.1| RRF2 family protein [Fusobacterium sp. 1_1_41FAA]
Length = 141
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 6/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R
Sbjct: 1 MKINTKVRYGLKALAYIAENSSDKKLVRIKEISEDQDISIQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHK---IDCPLVGSCGLTSVLRKAL 115
G GG +L +QI + + K ++ V +C + + +C +CG T + +
Sbjct: 61 GPTGGYKLTLKPNQINLYTIYKILDDEERVIDCNENAEGKAHNCN-EEACGETCIWSRLD 119
Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
NA +L++ S+E ++N I
Sbjct: 120 NAMTKILSETSLEDFIKNGKKI 141
>gi|209967102|ref|YP_002300017.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
gi|209960568|gb|ACJ01205.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
Length = 156
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 71/141 (50%), Gaps = 6/141 (4%)
Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L++R Y +R ++ A + RI+ IA A I FL IL L KAG++++VRGR
Sbjct: 8 LSQRCKYALRAAVHLAGLSEQEGCARIADIAAAENIPHKFLEAILLDLRKAGLLKSVRGR 67
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
GG RL +P + +++ D+++ E + C + DC C + + KA +
Sbjct: 68 DGGYRLAKPPEHVSMGDIIRVVEGTIAPIRCASRNRFEPCEDCGNPDECVIRWAMVKARD 127
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +VL + ++ R R ++
Sbjct: 128 AMAEVLDRCTLAEAARRRRTL 148
>gi|67923935|ref|ZP_00517390.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501]
gi|67854203|gb|EAM49507.1| Protein of unknown function UPF0074 [Crocosphaera watsonii WH 8501]
Length = 147
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ Y ++ L+ ++ + P + IA+ + +L K+L + + G+V ++RG
Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQELPAPYLEKLLIEMRRNGLVNSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L R +I++ ++ A E+ + D V S+ ++
Sbjct: 61 SRGGYQLARQPSEISLGQILDAVGETIEP---LPHYNPDLDQVEDWVTFSLWKRLHQKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L + ++ L + S K
Sbjct: 118 EALYKITLADLYYDARSWKASLG 140
>gi|269127506|ref|YP_003300876.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268312464|gb|ACY98838.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora
curvata DSM 43183]
Length = 154
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ R DY +R A+ P Q+AE+ I FL IL L ++G+V + RG
Sbjct: 1 MRLSARVDYALRAAAELAVAGSTPVTAVQLAESQQIPPKFLENILGQLRRSGLVRSQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +PAD+I++ D+++A + + L V +
Sbjct: 61 DGGYWLAKPADEISLADIIRAIDGPLLGVRGERPEHVGYQGAAR-PLQEVWIALRASERS 119
Query: 121 VLTQYSIECLVRNR 134
+L ++ + +
Sbjct: 120 ILESVTLAHIAAGK 133
>gi|322419199|ref|YP_004198422.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
gi|320125586|gb|ADW13146.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
Length = 153
Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T YG++ L+Y A D P I+ +A I + FL IL L +GI+++ +G+
Sbjct: 2 ISKKTKYGLKALIYLARKYDKGPILIADLARDENIPKKFLEAILLSLKNSGILQSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L R IT ++ + C + +C SCG+ V++ +A
Sbjct: 62 GGYYLGRNPKDITFGQAIRVMDGPLAPVPCVSESAYAECRECHDEFSCGIRLVMKDVRDA 121
Query: 118 FFDVLTQYSIECLV 131
+L + S+ ++
Sbjct: 122 MASILDRTSLADVL 135
>gi|159044849|ref|YP_001533643.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157912609|gb|ABV94042.1| putative transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length = 139
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 69/131 (52%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R+LM A + + +AE +S L KI+Q L +AGIVET RG
Sbjct: 1 MRLTSFTDYGLRMLMRMASAPERAFSTADLAEEFDLSRHHLSKIMQRLSRAGIVETRRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +PA ++ + V+ E+ + ECF S C + CGL + LR A AF
Sbjct: 61 GGGATLAQPASELRLGRVIAVLEQDQPIVECFGSGPHSCTIDRQCGLKARLRAAERAFLT 120
Query: 121 VLTQYSIECLV 131
L + ++ +
Sbjct: 121 DLDRSTLADIA 131
>gi|56962129|ref|YP_173852.1| transcriptional regulator [Bacillus clausii KSM-K16]
gi|81367334|sp|Q5WL64|NSRR_BACSK RecName: Full=HTH-type transcriptional regulator nsrR
gi|56908364|dbj|BAD62891.1| transcriptional regulator [Bacillus clausii KSM-K16]
Length = 149
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 82/142 (57%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R+L+Y A+ + Q+A+ IS L K+ L K G++ET++G
Sbjct: 1 MQLTSYTDYSLRLLLYLALQPKHKLSSVKQVADIYRISYNHLTKVTHELGKLGLIETIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + ++I I +VVK TE++ + ECF C L +C L VL +AL A+
Sbjct: 61 RNGGIRLAKEPEEINIGEVVKQTEDNLELVECFNRETNTCILNPACRLKGVLHEALAAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL QY+++ LV N ++ +
Sbjct: 121 QVLEQYTVKDLVLNEDDLRALL 142
>gi|108805159|ref|YP_645096.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
xylanophilus DSM 9941]
gi|108766402|gb|ABG05284.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
xylanophilus DSM 9941]
Length = 154
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M ++ RTDY +R + A P + I+E I + F+ IL L +AGIV
Sbjct: 1 MQVSARTDYALRAVAELARAGMEGSGPVKGEWISEVQKIPKKFMENILLDLKRAGIVRAQ 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L RP +I++ ++++A E + L V +
Sbjct: 61 RGASGGYWLARPPGEISLAEIIRAVEGPLANVRGEWPENVAYEGAAE-HLQEVWVAVRAS 119
Query: 118 FFDVLTQYSIECLVRNR 134
VL ++E LVR
Sbjct: 120 LRSVLENVTLEDLVRGE 136
>gi|262393041|ref|YP_003284895.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25]
gi|269967699|ref|ZP_06181748.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B]
gi|262336635|gb|ACY50430.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio sp. Ex25]
gi|269827677|gb|EEZ81962.1| hypothetical protein VMC_31780 [Vibrio alginolyticus 40B]
Length = 141
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L++ A + D I+++ + +S + K++ L + G V TVRG
Sbjct: 1 MQLTSFTDYALRTLIFLASLPEDELTNITEVTDLFGVSRNHMVKVINRLGQLGYVHTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL +PA +IT+ VV+ E + C C + +C L L KA +AF
Sbjct: 61 KNGGIRLMKPASEITVGGVVRDL-EPLDLVNCGVDF---CHITPACRLKDKLAKAKSAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L +IE L+ + S + +
Sbjct: 117 AELDDCTIESLLSDNSELLILL 138
>gi|241203623|ref|YP_002974719.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240857513|gb|ACS55180.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 148
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L G+V + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGVVASRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPLAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL +I + + S
Sbjct: 122 TRKVLFSTTIADAIAPKHS 140
>gi|302036962|ref|YP_003797284.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
defluvii]
gi|300605026|emb|CBK41359.1| putative HTH-type transcriptional regulator, rrf2 family
[Candidatus Nitrospira defluvii]
Length = 141
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 7/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K+++YG+R L+ + + +IAE I FL +IL L +AG++ + RG
Sbjct: 1 MKFSKKSEYGLRALLELCETYGGRVLQRHEIAERQNIPVEFLEQILLALKRAGLLASRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLV--GSCGLTSVLRK 113
RGG L + + IT+ V++ + C + DCP SC L + +
Sbjct: 61 VRGGYSLIKSPEDITLGQVIRILDGPLAPISCVSKTAYQKCADCPYAAKPSCPLQQAMGE 120
Query: 114 ALNAFFDVLTQYSIE 128
+A ++L Y++
Sbjct: 121 VRDAIANILDHYTLS 135
>gi|311899855|dbj|BAJ32263.1| putative transcriptional regulator NsrR [Kitasatospora setae
KM-6054]
Length = 167
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD +R+ M A + D ++AE + K++ L G+VE RG
Sbjct: 1 MRLTKSTDIALRIAMRLAVLDEDQTPTTREVAEVVGVPYNHAAKVVSRLQHLGVVEARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L ++ +V+ E V C CPL SC L LR+A AFF
Sbjct: 61 RGGGLALTAAGRTGSLGRIVRELEGVGDVVGC--EDDPPCPLRHSCRLRGALRRAQEAFF 118
Query: 120 DVLTQYSIECLVRN 133
L +++ LV +
Sbjct: 119 ATLDPLTVDDLVAD 132
>gi|23015106|ref|ZP_00054893.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 128
Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 68/131 (51%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TD+ IR+L+Y + H D + ++AE IS L KI++ L G ++TVRG+
Sbjct: 1 MKITQFTDFSIRLLIYLSRHRDRVVTVREVAEYYGISAEHLKKIVRSLADLGHLQTVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R I I + + +E+ + C CP+ C L ++ AL AF
Sbjct: 61 HGGLRLAREPRDIDIGRLFRQ-QENLALLPCHEP-CDGCPI-DDCRLRGLVDNALAAFLA 117
Query: 121 VLTQYSIECLV 131
V S+ ++
Sbjct: 118 VFDGKSLADVI 128
>gi|332560946|ref|ZP_08415264.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
sphaeroides WS8N]
gi|332274744|gb|EGJ20060.1| Transcriptional regulator, BadM/Rrf2 family protein [Rhodobacter
sphaeroides WS8N]
Length = 143
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 48/130 (36%), Positives = 76/130 (58%), Gaps = 2/130 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+TK +DY +RVL+Y A I + I + A IS+ L K++ L+ AG ++ RGR
Sbjct: 1 MTKFSDYALRVLLYAASIEDGRLVTIGETASIYGISQGHLKKVVMNLIHAGFLQGTRGRT 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG RL RPA +I + +V++ATE F + ECF C + C L +L KA+++F D
Sbjct: 61 GGFRLARPASEIRLGEVLRATETDFALVECFQQGNACC-ISRPCRLPPILAKAVSSFMDT 119
Query: 122 LTQYSIECLV 131
L +++I ++
Sbjct: 120 LDEFTIADVM 129
>gi|254503973|ref|ZP_05116124.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
gi|222440044|gb|EEE46723.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
Length = 140
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 61/128 (47%), Positives = 88/128 (68%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MYCA++ D P+R++ IA + +SE LFKI++ LV A ++ T+RGR GGV L RPA+ I+
Sbjct: 1 MYCAVNPDKPSRVADIAASFEMSETHLFKIMKVLVDANLIRTIRGRNGGVMLARPAEAIS 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ +VV+A EESF +AECF S + DCPL+ SCG +L +AL AF +VL SI L +R
Sbjct: 61 VGEVVRAAEESFLLAECFDSGRKDCPLIMSCGFNGLLHEALEAFMEVLDAKSIADLSEDR 120
Query: 135 SSIKKIFN 142
++ + N
Sbjct: 121 FGMRTLLN 128
>gi|281356072|ref|ZP_06242565.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
ATCC BAA-548]
gi|281317441|gb|EFB01462.1| transcriptional regulator, BadM/Rrf2 family [Victivallis vadensis
ATCC BAA-548]
Length = 145
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ ++ YG+R+L+ A + ++ ++AE IS+ ++ +I+ L +G+V + RGR
Sbjct: 4 LSTKSRYGLRILLQLAQCRGSGRSCKVRELAEQQSISDAYVEQIMIALKGSGLVFSARGR 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R IT+LDV++ E + C + C + C +V ++ AF
Sbjct: 64 NGGYLLGRVPADITVLDVIELFEGRIDLVGCTGPEQR-CARIAGCLSRTVWQRLSEAFRR 122
Query: 121 VLTQYSIECLVRNRSS 136
++ ++ + +
Sbjct: 123 EAAAITLADILNSPPA 138
>gi|218661187|ref|ZP_03517117.1| putative transcriptional regulator protein [Rhizobium etli IE4771]
gi|218675215|ref|ZP_03524884.1| putative transcriptional regulator protein [Rhizobium etli GR56]
Length = 148
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLV--RNRSSIKKIF 141
VL +I V R+ + + ++
Sbjct: 122 TRKVLFSTTIADAVGPRHGAEVTRLL 147
>gi|170743400|ref|YP_001772055.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
4-46]
gi|168197674|gb|ACA19621.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
4-46]
Length = 150
Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT + YG++ L++ A + ++++A A I + FL IL L AG+V + +G
Sbjct: 2 LTNKGKYGLKALVHLAALPPGTRIGVAEVAAANNIPKKFLDAILGELRNAGLVHSRKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RP ++I + V+ + C + DCP G+C + V+ + N+
Sbjct: 62 GGYALARPPEEIRVGHAVRVLDGPLAPVPCASRTAYRPCEDCPDEGACAVRLVMLEVRNS 121
Query: 118 FFDVLTQYSIECL 130
VL ++ +
Sbjct: 122 IAGVLDTLTLAQM 134
>gi|325479354|gb|EGC82450.1| putative HTH-type transcriptional regulator CymR [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 133
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + Y A + D +S+++E +SE +L ++++ L G++++ RG
Sbjct: 1 MKLSTRGRYGLRAMCYLASNEDRGYISVSEMSEKLNLSENYLEQLIRLLKNDGLIKSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG ++ + D+I++ +V++ E + +++C + C V +
Sbjct: 61 PKGGYKITKDLDEISVGEVLRVLEGNITMSDCVSGEHFC---DDKCDAYYVFNRIDQVIN 117
Query: 120 DVLTQYSIECLVRNR 134
D + S++ ++
Sbjct: 118 DAVDSISLKNMINQE 132
>gi|260771408|ref|ZP_05880333.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972]
gi|260613534|gb|EEX38728.1| iron-sulfur cluster regulator IscR [Vibrio furnissii CIP 102972]
gi|315180989|gb|ADT87903.1| HTH-type transcriptional regulator iscR [Vibrio furnissii NCTC
11218]
Length = 163
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 3/127 (2%)
Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A+
Sbjct: 3 AMLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGSDAN 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
I+I V+ A +ES +C + K DC C ++ R + D L ++ L+
Sbjct: 63 TISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELM 120
Query: 132 RNRSSIK 138
+ ++
Sbjct: 121 IDNEVLE 127
>gi|298368426|ref|ZP_06979744.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
sp. oral taxon 014 str. F0314]
gi|298282429|gb|EFI23916.1| iron-sulfur cluster assembly transcription factor IscR [Neisseria
sp. oral taxon 014 str. F0314]
Length = 148
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ ++S I+E IS +L ++ L +A +VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQTGAVKLSAISERQSISLSYLEQLFSKLRRAQLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ C K +C C +
Sbjct: 61 PGGGYILAAPASEINIAQIIAAAEDRLDATRC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRS 135
D L+ +++ ++ ++
Sbjct: 119 DYLSSVTLQSIIEQKN 134
>gi|212638580|ref|YP_002315100.1| putative transcriptional regulator YrzC [Anoxybacillus flavithermus
WK1]
gi|212560060|gb|ACJ33115.1| Putative transcriptional regulator YrzC [Anoxybacillus flavithermus
WK1]
Length = 150
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + YG+ +++ A + + P + IA+ +SE +L +++ PL AG+V++VRG
Sbjct: 13 LKISTKGRYGLTIMIELAKRYGEGPISLKSIAQTNNLSEHYLEQLISPLRNAGLVKSVRG 72
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +IT DV++ E V E + + + +A
Sbjct: 73 AYGGYILADEPSKITAGDVIRVLEGPLQVVEELEDEEPAK--------RELWMRIRDAVK 124
Query: 120 DVLTQYSIECLVRN 133
+VL ++E L +
Sbjct: 125 EVLDSTTLEDLASH 138
>gi|15613620|ref|NP_241923.1| hypothetical protein BH1057 [Bacillus halodurans C-125]
gi|8480599|sp|Q9RC41|NSRR_BACHD RecName: Full=HTH-type transcriptional regulator nsrR
gi|5822814|dbj|BAA83958.1| YHDE [Bacillus halodurans]
gi|10173672|dbj|BAB04776.1| BH1057 [Bacillus halodurans C-125]
Length = 146
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 53/142 (37%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R+L+Y A+ D + + Q+A IS L K+ L K G++ET++G
Sbjct: 1 MQLTSYTDYSLRLLLYLALQPKDKLSSVKQVATIYNISYNHLTKVTYELGKLGLIETIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL + ++I I VVK TE++ + ECF C L C L VL +AL A+
Sbjct: 61 RNGGIRLAKAPEEINIGAVVKQTEDNLELVECFNHETNTCILNPVCRLKGVLHEALTAYL 120
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
VL QY+++ L+ N ++ +
Sbjct: 121 RVLEQYTLKDLLTNEDELQALL 142
>gi|328957508|ref|YP_004374894.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
17-4]
gi|328673832|gb|AEB29878.1| putative HTH-type transcriptional regulator [Carnobacterium sp.
17-4]
Length = 137
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A+ + R+ +A+ IS +L KIL L KAG++ + G
Sbjct: 1 MKYSKATNYALHSMVHLAMESTSGAVRVEDLAKRQKISPTYLSKILTKLSKAGLIVSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R ++ T LD+++A E + C SH C + + A +
Sbjct: 61 VKGGYRLLRSPEECTFLDIIQAIEGYESLLNCTMSHDGKWNR--HCLIERAVADAEDKLK 118
Query: 120 DVLTQYSIECLVRNRSS 136
D L + +I +++ R
Sbjct: 119 DELARKTIADILKQRQE 135
>gi|312887338|ref|ZP_07746939.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
paludis DSM 18603]
gi|311300141|gb|EFQ77209.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
paludis DSM 18603]
Length = 145
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 70/144 (48%), Gaps = 5/144 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y I+ L+ + + P +IS+IAE I + FL +IL L AG + + +G
Sbjct: 2 LSKKTKYAIKALVSLGKNMGNPPVQISKIAEEEKIPKKFLEQILLDLRNAGFLYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I ++ V++ T+ + C + +C +CG+ SV +
Sbjct: 62 GGYSLNKDPKEIFLVQVMRITDGPIAMVPCASLNFYHKCEECKSELTCGIRSVFIDVRDV 121
Query: 118 FFDVLTQYSIECLVRNRSSIKKIF 141
+L++ SI ++ ++ +
Sbjct: 122 TLKILSETSIADIIEREVNLISLI 145
>gi|126658452|ref|ZP_01729600.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp.
CCY0110]
gi|126620194|gb|EAZ90915.1| Transcriptional Regulator, BadM/Rrf2 family protein [Cyanothece sp.
CCY0110]
Length = 147
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ Y ++ L+ ++ + P + IA+ + +L K+L + ++G+V ++RG
Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIEMRRSGLVNSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R QI++ +++ A ++ + D V S+ ++
Sbjct: 61 SQGGYQLARQPSQISLGEILDAVGDTIEP---LPYYNPDIEQVEDWVTFSLWKRLHEKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L + ++ L + S K
Sbjct: 118 EALYKITLADLYYDARSWKASLG 140
>gi|260433137|ref|ZP_05787108.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
ITI-1157]
gi|260416965|gb|EEX10224.1| putative transcriptional regulator [Silicibacter lacuscaerulensis
ITI-1157]
Length = 142
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 46/129 (35%), Positives = 68/129 (52%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD+G+R+LM A + +++AE +S L K++ L +AG +ET RG
Sbjct: 1 MRLTTFTDFGLRILMRMAGAPERAFSTAELAEEFQVSRAHLAKVISALARAGYLETRRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +QI + DVV E + ECFA+ C L SC L L++A F +
Sbjct: 61 GGGAMLARPPEQIRLGDVVGLLESGQAIVECFAADGSACTLSPSCLLKERLKRAEAVFLE 120
Query: 121 VLTQYSIEC 129
L + ++
Sbjct: 121 DLNRSTLAD 129
>gi|190890831|ref|YP_001977373.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
gi|190696110|gb|ACE90195.1| putative transcriptional regulator protein [Rhizobium etli CIAT
652]
Length = 148
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121
Query: 118 FFDVLTQYSIEC 129
VL +I
Sbjct: 122 TRKVLFSTTIAD 133
>gi|227499551|ref|ZP_03929658.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
35098]
gi|227218310|gb|EEI83564.1| possible transcriptional regulator [Anaerococcus tetradius ATCC
35098]
Length = 133
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + Y A ++ +S+I++ +SE +L ++++ L K G++ + RG
Sbjct: 1 MKLSTRGRYGLRAMCYLASNSSRGYISVSEISDKLNLSENYLEQLIRLLKKEGLISSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG ++ R D++T+ D+++ E + +++C + ++C C V K
Sbjct: 61 PKGGYKITRDLDELTVGDILRVLEGNITISDCVSGD-VNCD--DKCDAYYVFDKIDKVLN 117
Query: 120 DVLTQYSIECLVRNR 134
+ + S++ ++
Sbjct: 118 EAIDSISLKNIINQE 132
>gi|15838078|ref|NP_298766.1| hypothetical protein XF1477 [Xylella fastidiosa 9a5c]
gi|9106501|gb|AAF84286.1|AE003977_9 conserved hypothetical protein [Xylella fastidiosa 9a5c]
Length = 153
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A H +++AE + + KIL+PL +AG+VE RG
Sbjct: 2 LRVTKLTDYASVVLTVLAAHPGAVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL P +IT++ +V+A E + EC H C + CG+ S +
Sbjct: 62 YGGYRLAHPPGEITLIQIVEAIEGPLAITECSQDHNQ-CSITHQCGIRSNWQLINTLIAQ 120
Query: 121 VLTQYSIECLVR 132
L ++ ++
Sbjct: 121 ALRSITLAQMLA 132
>gi|71274966|ref|ZP_00651254.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon]
gi|71901204|ref|ZP_00683307.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
gi|170730004|ref|YP_001775437.1| hypothetical protein Xfasm12_0819 [Xylella fastidiosa M12]
gi|71164698|gb|EAO14412.1| Protein of unknown function UPF0074 [Xylella fastidiosa Dixon]
gi|71729048|gb|EAO31176.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
gi|167964797|gb|ACA11807.1| conserved hypothetical protein [Xylella fastidiosa M12]
Length = 153
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A H +++AE + + KIL+PL +AG+VE RG
Sbjct: 2 LRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVEGRRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R +IT++ +V+A E + EC H C + CG+ S +
Sbjct: 62 YGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHNQ-CSITHQCGIRSNWQLINTLIAQ 120
Query: 121 VLTQYSIECLVR 132
L ++ ++
Sbjct: 121 ALRSITLAQMLA 132
>gi|226313931|ref|YP_002773827.1| hypothetical protein BBR47_43460 [Brevibacillus brevis NBRC 100599]
gi|226096881|dbj|BAH45323.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 132
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 7/132 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ TDY + ++Y A D P + +AE +S+ +L K+L LVKAG++ +V G
Sbjct: 1 MKYSQATDYALHAMLYLVAEAPDKPVSVQLLAEKLGVSQTYLSKMLTKLVKAGLIHSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R D I+ LDV++A E + + EC H +C + V+ A
Sbjct: 61 ANGGYKLKRNQDDISFLDVIQAIEGTTSLFECSFRHD------SACLIQQVVTDAEQQMM 114
Query: 120 DVLTQYSIECLV 131
L I LV
Sbjct: 115 HTLKSKKIADLV 126
>gi|218508224|ref|ZP_03506102.1| putative transcriptional regulator protein [Rhizobium etli Brasil
5]
gi|327194314|gb|EGE61175.1| putative transcriptional regulator protein [Rhizobium etli
CNPAF512]
Length = 148
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLV--RNRSSIKKIF 141
VL +I V R+ + + ++
Sbjct: 122 TRKVLFSTTIADAVGPRHGAEVTRLL 147
>gi|193213019|ref|YP_001998972.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum
NCIB 8327]
gi|193086496|gb|ACF11772.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum
NCIB 8327]
Length = 141
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 71/137 (51%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A+ + P + ++A S++FL K +Q L KAGI +V+G
Sbjct: 2 LQVSRKFEYGLHAVSYLAMKGPERPVTVKELASEIGFSQVFLAKAMQSLNKAGITRSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RPA+QIT+ D+ A E + C + DC + +C + +
Sbjct: 62 VKGGYTLARPAEQITVADIGVAIEGEPHLMRCSQENC-DCEIESTCSHKAYMFNLQKRIQ 120
Query: 120 DVLTQYSIECLVRNRSS 136
+L + ++ L+ N +
Sbjct: 121 QLLAETTVASLLHNYHA 137
>gi|288961940|ref|YP_003452250.1| transcriptional regulator [Azospirillum sp. B510]
gi|288914220|dbj|BAI75706.1| transcriptional regulator [Azospirillum sp. B510]
Length = 150
Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++ Y +R L+ A + I+ IAE I FL IL L K G++ RG+
Sbjct: 2 LSQKAKYALRALIMLAEKDTGDLILIADIAERENIPRKFLEAILVELRKEGLLFAKRGKS 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPA +IT +V++ + C + DC +C + ++ + +A
Sbjct: 62 GGYRLARPAAEITFGEVIRLIDGHLAPIPCASKASFRPCEDCIDTATCSVRWLMVQVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL ++ +R+R S
Sbjct: 122 TAAVLDNRTLADALRHRQS 140
>gi|254421110|ref|ZP_05034834.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
gi|196187287|gb|EDX82263.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
Length = 146
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ R+ Y +R +++ A + P I +IAEA FL IL L + ++ + RGR
Sbjct: 2 LSNRSRYALRAMIHLAGLPGGGPATIGEIAEAATAPRKFLEAILLDLRRQNLLVSKRGRT 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L PA+ I+ DV++A E +A C + CP V +C L VL+ +A
Sbjct: 62 GGYALAAPAETISFADVIRALEGPLALAPCASRTAHGPCETCPDVETCPLQPVLQDGRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
V S+ N S I +
Sbjct: 122 VAAVFEARSLLQAASNPSPIDPV 144
>gi|19704551|ref|NP_604113.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|296328430|ref|ZP_06870956.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
gi|19714837|gb|AAL95412.1| RRF2 family protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
gi|296154504|gb|EFG95296.1| Rrf2 family transcriptional regulator [Fusobacterium nucleatum
subsp. nucleatum ATCC 23726]
Length = 143
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R
Sbjct: 1 MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKAL 115
G GG +L +I + + + ++ V +C C G CG T + K
Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCSEEG-CGDTCIWSKLD 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
NA +L++ S++ + N I++
Sbjct: 120 NAMTKILSETSLQDFINNGKRIQE 143
>gi|209525268|ref|ZP_03273810.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima
CS-328]
gi|209494283|gb|EDZ94596.1| transcriptional regulator, BadM/Rrf2 family [Arthrospira maxima
CS-328]
Length = 147
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ A + N P + IA I +L K+L + + G+V +VRG
Sbjct: 1 MKLTTRGHYSVKALLDLAVLQNQGPISVRAIASRQNIPAPYLEKLLIEMRQRGLVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L P QI++ +++A E+ ++H+ D + ++ +
Sbjct: 61 AHGGYQLAYPPAQISLGQILEAVGETIEP---LSNHQPDAEKIEDWVTFTLWNRLHEKLK 117
Query: 120 DVLTQYSIECL 130
+ L S+E L
Sbjct: 118 EALYSISLEDL 128
>gi|294788961|ref|ZP_06754201.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella
muelleri ATCC 29453]
gi|294483063|gb|EFG30750.1| iron-sulfur cluster assembly transcription factor IscR [Simonsiella
muelleri ATCC 29453]
Length = 148
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ D+ +++ I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLAMNAQDHAVKLNAISERQHISLSYLEQLFSKLRRAGLVESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ADQI I ++ A E+ C K +C C ++ +
Sbjct: 61 PGGGYILGKAADQINIAQIIAAAEDCLDATLCSG--KANCQSGSPCLTHNLWANLNHTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
L+ ++ L+
Sbjct: 119 SYLSSITLASLLEQPPP 135
>gi|172035368|ref|YP_001801869.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142]
gi|171696822|gb|ACB49803.1| hypothetical protein cce_0452 [Cyanothece sp. ATCC 51142]
Length = 153
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ Y ++ L+ ++ + P + IA+ + +L K+L + ++G+V ++RG
Sbjct: 7 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIAKRQDLPAPYLEKLLIKMRRSGLVNSLRG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R QI++ ++ A ++ + D V S+ ++
Sbjct: 67 SQGGYQLARQPSQISLGQILDAVGDTIEP---LPYYNPDIEQVEDWVTFSLWKRLHEKLK 123
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L + ++ L + S K
Sbjct: 124 EALYKITLADLYYDARSWKASLG 146
>gi|225568451|ref|ZP_03777476.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM
15053]
gi|225162679|gb|EEG75298.1| hypothetical protein CLOHYLEM_04528 [Clostridium hylemonae DSM
15053]
Length = 143
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + V+ A+H+D + + IAE +SE +L +I++ L A I+++VR
Sbjct: 1 MKISTKGIYALEVVADLALHSDAAHLESLKNIAERRKLSEKYLERIVKALKDAHIIKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG + + Q+T+ +V+KA E +C SC
Sbjct: 61 GAYGGYCMAKEPQQLTVREVLKAVEGELAPVDCLTQESSCGIDCRSCPTRDTWAALWQTI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
V + ++ +VR I K
Sbjct: 121 AGVADEVTVGDIVRAAEKIDK 141
>gi|17229573|ref|NP_486121.1| hypothetical protein alr2081 [Nostoc sp. PCC 7120]
gi|17131172|dbj|BAB73780.1| alr2081 [Nostoc sp. PCC 7120]
Length = 147
Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y ++ L+ ++ P + IA+ I +L K+L + +AG+V+++RG
Sbjct: 1 MKLTTKGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R +I+I +++A +E+ H S+ ++
Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDETITN---LPRHTPTPAQTEDWVTFSLWQRLNQKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L ++ L + S +
Sbjct: 118 EALYSITLADLYYDARSWQASLG 140
>gi|304440321|ref|ZP_07400210.1| iron-sulfur cluster assembly transcription regulator IscR
[Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371073|gb|EFM24690.1| iron-sulfur cluster assembly transcription regulator IscR
[Peptoniphilus duerdenii ATCC BAA-1640]
Length = 131
Score = 106 bits (266), Expect = 7e-22, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + YG+ + + D P IS IA +SE +L ++ L A ++++ RG
Sbjct: 1 MKLSTKGRYGLMAMYRLMESYGDGPQSISNIAMKENLSESYLEQLFSLLRNAKLIKSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +I I ++++A E + ++ C + CP C +L
Sbjct: 61 VNGGYSLAKDPKEIKIGEIIEALEGNMELSCC--QKDVVCPKSEECPTRDILDVVQFKIE 118
Query: 120 DVLTQYSIECL 130
+VL ++E +
Sbjct: 119 NVLDSMTLEDM 129
>gi|313905574|ref|ZP_07838937.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
gi|313469637|gb|EFR64976.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
Length = 131
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + Y +RV++ A +D + IAE IS+ +L I + +V+ ++ G+
Sbjct: 2 FSTKGRYALRVMIDLAQQDSDDFVPLKDIAERQDISKKYLEIIAKEMVRGKLIVGASGKH 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG RL R ++ ++ +V+ E +F C A + +CP C S+ ++ +
Sbjct: 62 GGYRLVRRPEEYSVGEVIDLMEGTFAPVVCLACNAEECPRADKCKTLSMWKEFYEIEKEF 121
Query: 122 LTQYSIECLV 131
I L+
Sbjct: 122 FYNKKISDLL 131
>gi|28198602|ref|NP_778916.1| hypothetical protein PD0694 [Xylella fastidiosa Temecula1]
gi|71897700|ref|ZP_00679945.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
gi|182681285|ref|YP_001829445.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa M23]
gi|28056686|gb|AAO28565.1| conserved hypothetical protein [Xylella fastidiosa Temecula1]
gi|71732603|gb|EAO34656.1| Protein of unknown function UPF0074 [Xylella fastidiosa Ann-1]
gi|182631395|gb|ACB92171.1| transcriptional regulator, BadM/Rrf2 family [Xylella fastidiosa
M23]
gi|307579736|gb|ADN63705.1| BadM/Rrf2 family transcriptional regulator [Xylella fastidiosa
subsp. fastidiosa GB514]
Length = 153
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A H +++AE + + KIL+PL +AG+V RG
Sbjct: 2 LRVTKLTDYASVVLTVLAAHPGVVLSANELAEHSGLEPPTVSKILKPLSQAGLVAGRRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R +IT++ +V+A E + EC H C + CG+ S +
Sbjct: 62 YGGYRLARTPGEITLIQIVEAIEGPLAITECSQDHNQ-CSITHQCGIRSNWQLINTLIAQ 120
Query: 121 VLTQYSIECLVR 132
L ++ ++
Sbjct: 121 ALRSITLAQMLA 132
>gi|327402275|ref|YP_004343113.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
DSM 16823]
gi|327317783|gb|AEA42275.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
DSM 16823]
Length = 139
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y + L Y A + P I +I+E I FL IL L K GI+ + G+
Sbjct: 2 LSKKTKYALHALTYLAKKEANEPTLILEISENGHIPRKFLESILLDLKKQGILNSKMGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I I +++ + C + +C +CGL V N
Sbjct: 62 GGYFLRQTPTEIQISTIIRLFNGPIALLPCVSLNYYQRCDECTDEKTCGLNKVFIDVRNE 121
Query: 118 FFDVLTQYSIECLVRNR 134
+L SI+ +V
Sbjct: 122 TLRILENKSIQDIVDQE 138
>gi|295688500|ref|YP_003592193.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
21756]
gi|295430403|gb|ADG09575.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
ATCC 21756]
Length = 143
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+++ Y +R ++ A N ++AE FL IL L + G++ + RG+ G
Sbjct: 2 LSQKARYALRAMIELARENGQ-VTAGELAERADAPRKFLEAILLSLSREGLIISRRGKFG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G L R ADQI+ ++++ + + C + DC + +C L L +A +A
Sbjct: 61 GYVLGRTADQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDIATCALREALLRARDAT 120
Query: 119 FDVLTQYSIECLVR 132
VL YS+ V+
Sbjct: 121 AAVLEGYSLADAVQ 134
>gi|86356775|ref|YP_468667.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
gi|86280877|gb|ABC89940.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
Length = 148
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 66/146 (45%), Gaps = 7/146 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRRCDDCDGEQTCEIRHVFAKVADA 121
Query: 118 FFDVLTQYSIECLV--RNRSSIKKIF 141
VL +I V R+ + + ++
Sbjct: 122 TRKVLFSTTIADAVGPRHGAEVTRLL 147
>gi|210608481|ref|ZP_03287857.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787]
gi|210153057|gb|EEA84063.1| hypothetical protein CLONEX_00036 [Clostridium nexile DSM 1787]
Length = 144
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 69/133 (51%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A H N P ++ IA+ +S +L ++ L KAGIV++++G
Sbjct: 1 MKISTKGRYGLRALVDLAGHDNGEPIALASIAQRQKLSLNYLEQVFSVLRKAGIVKSLKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + AD IT+ +V++ E F + + +A K + + V +
Sbjct: 61 VNGGYRLAKKADDITVKEVLEVLEGKFSIVDEYAQEKGTDDVQEAIKTL-VWDQINTRVN 119
Query: 120 DVLTQYSIECLVR 132
+L + +++ L+
Sbjct: 120 QLLEEKTLKQLMA 132
>gi|21225697|ref|NP_631476.1| hypothetical protein SCO7427 [Streptomyces coelicolor A3(2)]
gi|81858295|sp|Q9L132|NSRR_STRCO RecName: Full=HTH-type transcriptional repressor nsrR
gi|7160161|emb|CAB76346.1| Conserved hypothetical protein SC6D11.23 [Streptomyces coelicolor
A3(2)]
Length = 148
Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LTK TD +R LM A D P ++AE + K + L G+VE R
Sbjct: 1 MRLTKFTDLALRSLMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L ++++ +V+ E V +C CPL G+C L LR A AF
Sbjct: 61 GRGGGLTLTDLGRRVSVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAF 118
Query: 119 FDVLTQYSIECLVR 132
+ L ++ LV
Sbjct: 119 YAALDPLTVTDLVA 132
>gi|237744245|ref|ZP_04574726.1| RRF2 family protein [Fusobacterium sp. 7_1]
gi|256027909|ref|ZP_05441743.1| RRF2 family protein [Fusobacterium sp. D11]
gi|260494171|ref|ZP_05814302.1| iron-sulfur cluster assembly transcription factor IscR
[Fusobacterium sp. 3_1_33]
gi|289765858|ref|ZP_06525236.1| RRF2 family protein [Fusobacterium sp. D11]
gi|229431474|gb|EEO41686.1| RRF2 family protein [Fusobacterium sp. 7_1]
gi|260198317|gb|EEW95833.1| iron-sulfur cluster assembly transcription factor IscR
[Fusobacterium sp. 3_1_33]
gi|289717413|gb|EFD81425.1| RRF2 family protein [Fusobacterium sp. D11]
Length = 143
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R
Sbjct: 1 MKVNTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKAL 115
G GG +L ++I + + + ++ V +C +C CG T + K
Sbjct: 61 GPTGGYKLAIKPEEIDLYMIYRILDDEEKVIDCNEMGEGKVHNCS-EAGCGDTCIWSKLD 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
NA +L++ S++ + N I++
Sbjct: 120 NAMTKILSETSLQDFINNGKRIQE 143
>gi|297584735|ref|YP_003700515.1| BadM/Rrf2 family transcriptional regulator [Bacillus
selenitireducens MLS10]
gi|297143192|gb|ADH99949.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
selenitireducens MLS10]
Length = 139
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ ++M A + + P + IA +SE +L +++ PL A +V++VRG
Sbjct: 1 MKISTKGRYGLTIMMALARKYGEGPVSLKSIAHEHALSEHYLEQLIAPLRNAALVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + IT DV++ E E + + K +A
Sbjct: 61 AYGGYMLAKEPESITAGDVIRVLEGPITPVEIIDDEEPAK--------RDLRIKIRDAVK 112
Query: 120 DVLTQYSIECLVR 132
DVL ++E L
Sbjct: 113 DVLDSTTLEDLAN 125
>gi|189346037|ref|YP_001942566.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM
245]
gi|189340184|gb|ACD89587.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola
DSM 245]
Length = 143
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A + ++AE+ S+ FL K +Q + KAGI E+V+G
Sbjct: 2 LQVSRKFEYGLHAVAYLATKGSGRVVTVKEMAESIGFSQEFLSKAMQSMKKAGITESVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R ITI D+ A E + C C + C + +
Sbjct: 62 VKGGYRLARHPSVITIADIGIAIEGKPHLTRCAVKL-SSCEIAAHCDYRGYMNTLQDRIQ 120
Query: 120 DVLTQYSIECLVRNRSS 136
++ ++ +++ S
Sbjct: 121 SLMASTTVADILKQPDS 137
>gi|85704175|ref|ZP_01035278.1| Rrf2 family protein [Roseovarius sp. 217]
gi|85671495|gb|EAQ26353.1| Rrf2 family protein [Roseovarius sp. 217]
Length = 140
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 71/135 (52%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD+G+R+LM A D +++A +S L KI+Q L +AG+++T RG
Sbjct: 1 MRLTSFTDFGLRMLMRMASAPDRAFSSAELATEFDLSRHHLAKIMQRLSQAGLIDTRRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP QI + DV++ E + CF DC L G C L + LR A AF D
Sbjct: 61 GGGALLARPPAQIRLGDVIRHLESGQALVACFGPEAGDCSLDGRCRLKARLRSAERAFLD 120
Query: 121 VLTQYSIECLVRNRS 135
L + ++ + + +
Sbjct: 121 DLDRSTLADIALDPT 135
>gi|83592507|ref|YP_426259.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
ATCC 11170]
gi|83575421|gb|ABC21972.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
ATCC 11170]
Length = 148
Score = 106 bits (266), Expect = 9e-22, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ L+Y A H D P I++IAE+ IS+ FL IL L AG+V + +GR
Sbjct: 2 LSNKAKYGLKALLYLAEHGDGTPILIAEIAESEDISKKFLDAILLELRNAGLVGSKKGRG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +P DQI I V++ + C + DC V C + ++ +A
Sbjct: 62 GGYFLAKPTDQIFIGTVIRVLDGPIAPIPCASRTAYRPCDDCGSVQECAIRGLMLDVRDA 121
Query: 118 FFDVLTQYSIECL 130
+L ++ L
Sbjct: 122 MAAILDSTTLAAL 134
>gi|264678558|ref|YP_003278465.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Comamonas testosteroni CNB-2]
gi|262209071|gb|ACY33169.1| transcriptional regulator, BadM/Rrf2 family [Comamonas testosteroni
CNB-2]
Length = 148
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
TDY +R+LM+ A + IS++A+A ISE L K+ L G +ETVRG+ GG+R
Sbjct: 1 MTDYALRLLMHVAQRPERLCTISEVAQAYSISEANLMKVTHQLALQGWIETVRGKGGGMR 60
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
L R QI I V++ E F + ECF + C L G C L +L+ AL++F L +
Sbjct: 61 LAREPQQIHIGTVIRGLESDFTLVECFGNDNR-CTLTGDCRLAGMLQGALHSFMAHLDGF 119
Query: 126 SIECLV 131
++ L+
Sbjct: 120 TLADLI 125
>gi|293375225|ref|ZP_06621510.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis
PC909]
gi|325845593|ref|ZP_08168879.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp.
HGF1]
gi|292646161|gb|EFF64186.1| transcriptional regulator, Rrf2 family [Turicibacter sanguinis
PC909]
gi|325488377|gb|EGC90800.1| putative HTH-type transcriptional repressor NsrR [Turicibacter sp.
HGF1]
Length = 131
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 68/131 (51%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+K +DY R L+Y A H D + +++ SE + K++ L K V +++GR
Sbjct: 1 MQLSKFSDYSFRALIYLAQHRDQLCTVEELSMNLNTSEQHMKKVIHKLGKTPYVTSIKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +I + +++K TE++ + ECF L C L S+ AL F +
Sbjct: 61 GGGLRLGCEPQEINLGEILKITEDNLNILECFNKSAGCPLLSSGCKLKSITSDALQKFIE 120
Query: 121 VLTQYSIECLV 131
+ Y++E L+
Sbjct: 121 EFSNYTLEDLL 131
>gi|34763186|ref|ZP_00144152.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237742213|ref|ZP_04572694.1| rrf2 family protein [Fusobacterium sp. 4_1_13]
gi|256845486|ref|ZP_05550944.1| iron-sulfur cluster assembly transcription factor IscR
[Fusobacterium sp. 3_1_36A2]
gi|294785208|ref|ZP_06750496.1| RRF2 family protein [Fusobacterium sp. 3_1_27]
gi|27887155|gb|EAA24260.1| RRF2 FAMILY PROTEIN [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229429861|gb|EEO40073.1| rrf2 family protein [Fusobacterium sp. 4_1_13]
gi|256719045|gb|EEU32600.1| iron-sulfur cluster assembly transcription factor IscR
[Fusobacterium sp. 3_1_36A2]
gi|294486922|gb|EFG34284.1| RRF2 family protein [Fusobacterium sp. 3_1_27]
Length = 141
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R
Sbjct: 1 MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG +L +I + + + ++ V +C K CG T + K N
Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYRILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +L++ S++ + N I
Sbjct: 121 AMTKILSETSLQDFINNGKRI 141
>gi|283458758|ref|YP_003363397.1| putative transcriptional regulator [Rothia mucilaginosa DY-18]
gi|283134812|dbj|BAI65577.1| predicted transcriptional regulator [Rothia mucilaginosa DY-18]
Length = 222
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +D +RVLM A+ +IAE + K + LV G +++ RG
Sbjct: 67 MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 126
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGV L T+ +++ATE + EC CPL C L +VL KA AF+
Sbjct: 127 RSGGVMLSDAGRSATVGTILRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 185
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ I L + +F
Sbjct: 186 ASVDSVIISELTAGARPVGPVF 207
>gi|114798504|ref|YP_760252.1| putative transcriptional regulator [Hyphomonas neptunium ATCC
15444]
gi|114738678|gb|ABI76803.1| putative transcriptional regulator [Hyphomonas neptunium ATCC
15444]
Length = 136
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 46/131 (35%), Positives = 70/131 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R+LM A D +++AE +S L KI+Q L AG+++T RG
Sbjct: 1 MRLTAFTDYGLRMLMRMASAPDRAFSTAELAEEFGLSRNHLAKIMQRLAGAGLIQTRRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++I + +++ EE + EC ++ C L C L + L+ A AF
Sbjct: 61 GGGAELGRPANEIRLGAIIRLLEEGQPLVECLSADGGACTLTPRCRLKARLQSAEMAFLS 120
Query: 121 VLTQYSIECLV 131
L Q ++ +
Sbjct: 121 ELDQSTLADIA 131
>gi|78358758|ref|YP_390207.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78221163|gb|ABB40512.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 164
Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + YG R+L+ A+H + P + +AE +S+ +L KI + L +AG ++ RG
Sbjct: 1 MRLLTNSRYGTRMLLDVAVHGRNGPVLMRDVAERLGVSQKYLEKIARQLKEAGFLKAQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R T+ DVV+ E + C C C + ++A A F
Sbjct: 61 PNGGHTLARDVTTFTVGDVVRLLEGGTDIVGCGRDE-EGCTHAPGCLTRMLWKEAGIAMF 119
Query: 120 DVLTQYSIECLVR 132
+ L +++ LV
Sbjct: 120 ERLDRFTFAELVA 132
>gi|304404495|ref|ZP_07386156.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304346302|gb|EFM12135.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 133
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + P + Q+AE +S +L KIL LVKAG+VE+ G
Sbjct: 1 MKYSKATNYALHTMLYLMAATPNRPIGVQQLAERQDVSSTYLSKILTKLVKAGMVESASG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R +QI+ LD++ A E + + +C H CP + V+ +A
Sbjct: 61 ANGGYRLKRDWEQISFLDIIHAIEGTASIFDCSFDHGPQCP------IQRVVLEAEQQME 114
Query: 120 DVLTQYSIECLVR 132
L+ ++ L +
Sbjct: 115 QHLSNQTLAALAQ 127
>gi|227539117|ref|ZP_03969166.1| rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241067|gb|EEI91082.1| rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33300]
Length = 142
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y I+ LM + P +I +IA+ I + FL +IL + AGI+ + +G
Sbjct: 2 LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + + + V++ + + C + +C CG+ NA
Sbjct: 62 GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+L SI L+ +
Sbjct: 122 MLQILNDTSIAHLINKEKELN 142
>gi|294054903|ref|YP_003548561.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
akajimensis DSM 45221]
gi|293614236|gb|ADE54391.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
akajimensis DSM 45221]
Length = 145
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 72/141 (51%), Gaps = 1/141 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +RVL+Y + + I ++AE +S + KI++ L G +ET+RG+
Sbjct: 1 MELTSFTDYSLRVLIYLTHDRERLSSIDELAEFYGLSRHHVAKIVKRLADLGYLETLRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL + I I +V+K TE F + EC C + G C L L A + FF
Sbjct: 61 NGGLRLGAEPESINIAEVIKGTEPHFNLVECMGGASDTACMIDGHCKLKGALAVARSHFF 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L +YS+ + S + +
Sbjct: 121 KHLAEYSLADVALTEDSSRAV 141
>gi|325266631|ref|ZP_08133308.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
denitrificans ATCC 33394]
gi|324982074|gb|EGC17709.1| iron-sulfur cluster assembly transcription regulator IscR [Kingella
denitrificans ATCC 33394]
Length = 148
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A++ + +++ I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGRFAVTAMIDLALNAQNNAVKLNSISERQQISLSYLEQLFSKLRRAGLVESIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A +I I ++ A E+ C K +C C ++ +
Sbjct: 61 PGGGYILGRDAGEINIAQIIAAAEDELDATLC--KGKANCQSGAPCLTHNLWENLNHTIN 118
Query: 120 DVLTQYSIECLVRNRSS 136
L+ ++ L+ +
Sbjct: 119 AYLSSVTLAGLLAQQQP 135
>gi|269839251|ref|YP_003323943.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thermobaculum terrenum ATCC BAA-798]
gi|269790981|gb|ACZ43121.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum
ATCC BAA-798]
Length = 153
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 40/143 (27%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T R DY +R + A P + QI+EA I FL IL L +AG+V T RG+
Sbjct: 1 MHITARADYALRAAIEMAASWPQPLKGEQISEAQDIPIKFLESILLDLKRAGLVRTQRGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R +I++ D+++A E + +I + L V
Sbjct: 61 AGGYWLGREPAEISLADIIRAVEGPLANVRGMSPEEITYKGRAA-TLRDVWVALRANMRA 119
Query: 121 VLTQYSIECLVRNR--SSIKKIF 141
VL ++ +VR + +
Sbjct: 120 VLETTTLAHMVRGELPEQLHPLL 142
>gi|218248538|ref|YP_002373909.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
8801]
gi|257061606|ref|YP_003139494.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
8802]
gi|218169016|gb|ACK67753.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
8801]
gi|256591772|gb|ACV02659.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
8802]
Length = 147
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 65/143 (45%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R+ Y ++ L+ ++ + P + IA + +L K+L + ++G+V++VRG
Sbjct: 1 MKLTTRSHYSVKALLDLSLQPNYGPTSVKAIALRQDLPAPYLEKLLIEMRRSGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L QI++ +++A E+ ++ D S+ ++
Sbjct: 61 SQGGYQLAYQPSQISLGQILEAVGETIEP---LPGYQPDIEQGSDWVTFSLWKRLHEKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L + ++ L + S +
Sbjct: 118 EALYKITLADLYYDARSWQASLG 140
>gi|299537268|ref|ZP_07050571.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1]
gi|298727509|gb|EFI68081.1| hypothetical protein BFZC1_14678 [Lysinibacillus fusiformis ZC1]
Length = 166
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + + I ++E +SE +L K+L L K GIV +V G
Sbjct: 1 MKYSVMVEYALHSLVYLIDVPKNESIGIKDLSEFQGLSETYLSKVLGKLSKEGIVSSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108
+GG RL R + IT DVV+A E + +C C +C +
Sbjct: 61 VKGGYRLNRKPEDITFWDVVRAVEGEEPIFQCKNIKANFAYLNKKQKCESCSSQSNCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
SV+ +A + L +I
Sbjct: 121 SVMLEAEEHMRNYLRSKTIA 140
>gi|85713395|ref|ZP_01044399.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
[Idiomarina baltica OS145]
gi|85692781|gb|EAQ30775.1| Predicted transcriptional regulator, YjeB/RRF2 family protein
[Idiomarina baltica OS145]
Length = 150
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K TDYG+RVL+Y A D I+ ++ +S+ L K++ L K G+++T RG
Sbjct: 1 MQLKKYTDYGLRVLIYLAAAEPDERATINDLSSVFSVSKNHLNKVVHHLGKLGLIKTWRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG L A + V++ E +C C + C L ++ F+
Sbjct: 61 KGGGFSLAVDARHTRLDTVIRQLEGDEDWIDCL---NPTCKIYSVCDLKGIIHAGKEQFY 117
Query: 120 DVLTQYSIECLVRNRSSIK 138
L +Y+I LV IK
Sbjct: 118 SYLAKYTIASLVERPEEIK 136
>gi|91795047|ref|YP_564698.1| hypothetical protein Sden_3702 [Shewanella denitrificans OS217]
gi|91717049|gb|ABE56975.1| transcriptional regulator, BadM/Rrf2 family [Shewanella
denitrificans OS217]
Length = 151
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/143 (33%), Positives = 73/143 (51%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TDYGIR+LMY AI + RI +I + +S + KI+ L K G ++T+R
Sbjct: 1 MQLTRYTDYGIRILMYLAIQPERTELFRIGEITDVFDLSANHVAKIVNHLGKLGYLKTIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG +L A I + +V+ E S C + C C L S+L KAL+A+
Sbjct: 61 GKHGGFKLVTSASDINLGTLVRQLENSLVQVNCAEPY---CRFTPVCNLKSMLAKALSAY 117
Query: 119 FDVLTQYSIECLVRNRSSIKKIF 141
VL Y + ++ N + +
Sbjct: 118 LAVLDSYYLSDVIDNSDKLLESL 140
>gi|75909333|ref|YP_323629.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
ATCC 29413]
gi|75703058|gb|ABA22734.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
ATCC 29413]
Length = 147
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA+ I +L K+L + +AG+V+++RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPSYGPASVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R +I+I +++A +E+ H S+ ++
Sbjct: 61 SIGGYQLAREPAKISIGQILEAVDETITN---LPRHTPTPAQTEDWVTFSLWQRLNQKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L ++ L + S +
Sbjct: 118 EALYSITLADLYYDARSWQASLG 140
>gi|313624752|gb|EFR94699.1| putative transcriptional regulator [Listeria innocua FSL J1-023]
Length = 138
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKAAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ +I +V
Sbjct: 119 DYLSKQTIGSIV 130
>gi|212702242|ref|ZP_03310370.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098]
gi|212674305|gb|EEB34788.1| hypothetical protein DESPIG_00253 [Desulfovibrio piger ATCC 29098]
Length = 149
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 4/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + RT YG+R L+ A D ++ Q+A+ IS +L +I++ L GI+ VRG
Sbjct: 1 MKFSTRTRYGLRFLLRLAAQPDNSLLQLGQVAQEESISPGYLEQIVRALKPLGILRAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +P +I + DV E C K+ C G C + +
Sbjct: 61 SGGGYALSKPPSEINMEDVFLHLEGEISPVSCLGRGKV-CQREGLCSTRAFWHQLDEHVR 119
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
D L +++ ++ + S + + G
Sbjct: 120 DFLRHQTLQNIIESERSCCQ--DPG 142
>gi|126729963|ref|ZP_01745775.1| rrf2 family protein [Sagittula stellata E-37]
gi|126709343|gb|EBA08397.1| rrf2 family protein [Sagittula stellata E-37]
Length = 161
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+RVLMYCA H + +IA+ C SE L +++ L + G + T RGR GG+ L RPA
Sbjct: 1 MRVLMYCAAHTERLVTKHEIAQVCNASENHLAQVINQLAQLGFLHTQRGRNGGLELARPA 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+I I DV + E+ +AECFA CPL +C L +L KA N+F++ L +++ L
Sbjct: 61 SEIVIGDVFRHLEQPVPLAECFADVDNTCPLTEACRLRDLLTKAANSFYETLDPITLDAL 120
Query: 131 VRNRSSIKKIFNA 143
V + + I
Sbjct: 121 VCDNVPLLDIIAP 133
>gi|254491678|ref|ZP_05104857.1| FeS assembly SUF system regulator [Methylophaga thiooxidans DMS010]
gi|224463156|gb|EEF79426.1| FeS assembly SUF system regulator [Methylophaga thiooxydans DMS010]
Length = 163
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ + K TDYGI ++ Y A + D + IAEA + + K+L+ L G++++ RG
Sbjct: 2 LRMGKLTDYGIVLMSYLAANRDVQHSAHTIAEAVKVPLPTVRKVLKSLSHGGLLKSERGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L D+I++ +++ A E + EC + C C + + + NA F
Sbjct: 62 MGGYSLNNSPDKISVAEIITAIEGPIALTECVSDESH-CEQETHCAVQTNWTRINNAVFH 120
Query: 121 VLTQYSIECLVRNRSS 136
L + + ++ ++
Sbjct: 121 ALDEVKLADMLAPQNE 136
>gi|37520938|ref|NP_924315.1| hypothetical protein glr1369 [Gloeobacter violaceus PCC 7421]
gi|35211933|dbj|BAC89310.1| glr1369 [Gloeobacter violaceus PCC 7421]
Length = 159
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T+++DYGI ++ + A H + ++A + + KIL+ L + G++ + RG +
Sbjct: 3 RITRQSDYGIVLVSHLAAHPERSFGAPELAAQVNLPLPIVRKILKLLAREGLLVSQRGVK 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L P I++ DVV A E + EC C C L ++
Sbjct: 63 GGYCLALPPAVISVADVVTALEGPIALTECIEDAPGGGCAHEAVCPLMPKWQRINAVIQQ 122
Query: 121 VLTQYSIECLVR 132
L+ S+ L+
Sbjct: 123 ALSGISLSELIA 134
>gi|329895576|ref|ZP_08271072.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088]
gi|328922255|gb|EGG29605.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC3088]
Length = 149
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H + P ++ I+ IS +L ++ L K G+V++VRG GG L + +
Sbjct: 4 MLDLALHREHGPIPLAGISARQDISLSYLEQLFAQLRKHGLVKSVRGPGGGYYLGKSLEV 63
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I++ DV++A E C C +C + + D L S+ LV
Sbjct: 64 ISVADVIEAVNEDTDATRCRGRG--SCQKGATCLTHHLWSGLSDQIRDFLRNISLADLVV 121
Query: 133 NRSSIKKI 140
R I++I
Sbjct: 122 -REEIREI 128
>gi|90407535|ref|ZP_01215717.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3]
gi|90311345|gb|EAS39448.1| hypothetical protein PCNPT3_03591 [Psychromonas sp. CNPT3]
Length = 149
Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 74/143 (51%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDYG+R L+Y A + IS +A +S + K++ L K G ++ VRG
Sbjct: 1 MQLTTFTDYGLRTLIYLAILPKGELADISSVANIYNVSRNHMVKVISKLSKLGYIDAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL A +I + DV++ ES + C A C +VG+C L VL A NAF
Sbjct: 61 KNGGIRLGIDAHKIFLGDVIQNM-ESMNIVNCNAGF---CHIVGACQLKGVLASATNAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L +++I LV + + +
Sbjct: 117 AELNKHTILSLVEDNVPLVNLLG 139
>gi|306838497|ref|ZP_07471336.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
2653]
gi|306406418|gb|EFM62658.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. NF
2653]
Length = 199
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 58 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 117
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA++I I ++++A + + C + DC C + V+ A
Sbjct: 118 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 176
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 177 IANVLDHRTLAD 188
>gi|331699002|ref|YP_004335241.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326953691|gb|AEA27388.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
dioxanivorans CB1190]
Length = 148
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/142 (33%), Positives = 77/142 (54%), Gaps = 1/142 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T+ D+ +RVLM+ + I IA A +S L K+++ + AG+VET RGR
Sbjct: 1 MRHTQHADFALRVLMFLRVAPGRRGSIGDIALAHRVSRNHLDKVVRRMSTAGLVETSRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R IT+ DV+++ E+ F V EC + C + G CG +V AL+++F
Sbjct: 61 GGGVRLVRDPASITVGDVIRSMEDDFAVVECLGPARY-CRVAGVCGARTVFAAALDSYFA 119
Query: 121 VLTQYSIECLVRNRSSIKKIFN 142
VL + +++ + N ++
Sbjct: 120 VLDRATLDDVAANDGGLRGALG 141
>gi|241206059|ref|YP_002977155.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859949|gb|ACS57616.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 154
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+L ++E V + SI
Sbjct: 122 IAAILDNMTLEQFVADGGSI 141
>gi|148555866|ref|YP_001263448.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148501056|gb|ABQ69310.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
RW1]
Length = 179
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/141 (34%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
H+T +YGI L++ D +AE IS FL KI L KAGIV G R
Sbjct: 3 HITTSVEYGIHCLLWLVGSGDRAMSSRDLAELQGISPSFLAKIFPKLEKAGIVVASEGVR 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL RPAD I+ LD+V A E + +C FA G C + V+
Sbjct: 63 GGYRLARPADAISFLDIVDAIEGEKPLFDCQEVRERCALFAGGMPAWATDGVCAVHGVML 122
Query: 113 KALNAFFDVLTQYSIECLVRN 133
+A A D L S++ +
Sbjct: 123 QAEKAMRDALAAQSLQDVATR 143
>gi|115372474|ref|ZP_01459782.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1]
gi|115370436|gb|EAU69363.1| Rrf2 family protein [Stigmatella aurantiaca DW4/3-1]
Length = 158
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 2/143 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K TDYG+ +L A ++AE + + K+L+ L AG++ + RG
Sbjct: 3 RMSKMTDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAM 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA I + V+ A E + C + C L C + R A
Sbjct: 63 GGYGLARPAAAIPLTQVISALEGPVAITACVQHTDGEPSCELESVCRIRGHWRVINQAIQ 122
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L + ++ L ++++
Sbjct: 123 EALGRLTLADLCAPELRVERLVG 145
>gi|294013220|ref|YP_003546680.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S]
gi|292676550|dbj|BAI98068.1| BadM-family transcriptional regulator [Sphingobium japonicum UT26S]
Length = 141
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR
Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L I+ D+V+ T S + C + +C C L V+ + +
Sbjct: 62 GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121
Query: 118 FFDVLTQYSIEC 129
VL S+
Sbjct: 122 TAKVLDSISLAE 133
>gi|254302940|ref|ZP_04970298.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323132|gb|EDK88382.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 141
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG++ L Y A ++ RI +I+E IS +L +IL L I+E R
Sbjct: 1 MKINTKVRYGLKALAYIAENSTDKKLVRIKEISEDQDISVQYLEQILFKLKNENIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG +L +I + + K ++ V +C K CG T + K N
Sbjct: 61 GPTGGYKLAIEPKEIDLYMIYKILDDEEKVIDCNEMGEGKTHSCNEAGCGDTCIWSKLDN 120
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
A +L++ S++ + N I
Sbjct: 121 AMTKILSETSLQDFINNGKKI 141
>gi|255327681|ref|ZP_05368747.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC
25296]
gi|255295355|gb|EET74706.1| HTH-type transcriptional regulator NsrR [Rothia mucilaginosa ATCC
25296]
Length = 156
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +D +RVLM A+ +IAE + K + LV G +++ RG
Sbjct: 1 MRLTAFSDVSLRVLMLLSALEPGQKLSTQKIAEGVDTPYNHVAKAVAFLVNMGYLDSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGV L T+ V++ATE + EC CPL C L +VL KA AF+
Sbjct: 61 RSGGVMLSDAGRSATVGTVLRATEGDIPMIEC-EDENGHCPLDKFCRLRNVLAKAREAFY 119
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+ I L + +F
Sbjct: 120 ASVDSVIISELTAGARPVGPVF 141
>gi|167647686|ref|YP_001685349.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
gi|167350116|gb|ABZ72851.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
Length = 146
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+++ Y +R ++ A + ++A FL IL L + G+V + RG+ G
Sbjct: 2 LSQKARYALRAMIELARESGQ-VTAGELAVRADAPRKFLEAILLTLARQGLVTSRRGKFG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G L R DQI+ ++++ + + C + DC + +C L L +A +A
Sbjct: 61 GYLLGRGPDQISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120
Query: 119 FDVLTQYSIECLVR 132
VL YS+ V
Sbjct: 121 AAVLEGYSLSDAVN 134
>gi|21911420|gb|AAM80543.1| StaS [Streptomyces toyocaensis]
Length = 154
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 61/134 (45%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T RTDY +R + A + P +++ I FLF IL+ L A +V +VRG
Sbjct: 1 MRITARTDYAVRAMAELAAEGETPLTAEELSARQDIPVRFLFGILRELRLARLVHSVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L A++IT+ V++A + + ++ P + L V R +
Sbjct: 61 QGGYLLASAAEEITLAAVIRAVDGPLASVRELSLTGLEYP-GPAAVLPDVWRAVRTSLRQ 119
Query: 121 VLTQYSIECLVRNR 134
VL ++ L R
Sbjct: 120 VLETTTLADLARGE 133
>gi|300770623|ref|ZP_07080502.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
gi|300763099|gb|EFK59916.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
Length = 147
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 5/141 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y I+ LM + P +I +IA+ I + FL +IL + AGI+ + +G
Sbjct: 2 LSKKTKYAIKALMVLGRNYGKEPMQIVKIADEENIPKKFLEQILLEMRNAGILYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + + + V++ + + C + +C CG+ NA
Sbjct: 62 GGYSLNKAPEDVFLSQVMRLIDGPIALLPCVSLNFYRSCDECTEEHVCGIRDTFIDVRNA 121
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+L SI L+ +
Sbjct: 122 MLQILNDTSIAHLINKEKELN 142
>gi|297559632|ref|YP_003678606.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296844080|gb|ADH66100.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 154
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ R DY +R A+ ++ P Q+A A I FL IL L +AG+V + RG
Sbjct: 1 MRLSARVDYALRAAAELAVADEGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA +I++ D+++A + +D L V +
Sbjct: 61 VGGYWLARPAGEISLADIIRAVDGPLANVRGERPEHVDYDGAAR-SLQQVWIALRASERA 119
Query: 121 VLTQYSIECLVRNR 134
+L +++ LV N
Sbjct: 120 ILEGVNLQHLVTNE 133
>gi|296447739|ref|ZP_06889655.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
gi|296254771|gb|EFH01882.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
Length = 147
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ + + A + +S+IA I + FL IL L G V + G+
Sbjct: 2 LTKKGKYGLKAMAHLARFAPGHCVPVSEIATTQHIPKKFLDAILCELRNCGYVASKMGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPAD+I I D+++A + C + DC V C + V+++A A
Sbjct: 62 GGYTLARPADEIMIGDIIRALDGPLAPLPCASRSSYRPCDDCSDVARCAVRMVMQEAQQA 121
Query: 118 FFDVLTQYSIEC 129
VL ++
Sbjct: 122 LSKVLDNCTLAQ 133
>gi|226309029|ref|YP_002768989.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
gi|229491718|ref|ZP_04385539.1| transcriptional regulator [Rhodococcus erythropolis SK121]
gi|226188146|dbj|BAH36250.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
PR4]
gi|229321399|gb|EEN87199.1| transcriptional regulator [Rhodococcus erythropolis SK121]
Length = 149
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 47/137 (34%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD G+RV+M A + D +A+ +S K++ L + GIV T RG
Sbjct: 1 MQLTQFTDLGLRVVMRLAVLDADASPSTRDVAQQLNVSYSHATKVVTRLGELGIVTTRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ + TI + + E V +C CPL G C L S LR+A AFF
Sbjct: 61 RGGGLSITELGRTATIGWLARRLEGPGEVVDC--EGDKPCPLRGGCLLRSALREAQEAFF 118
Query: 120 DVLTQYSIECLVRNRSS 136
L +IE ++R S
Sbjct: 119 VSLDAVTIEDVIRQPSK 135
>gi|270308844|ref|YP_003330902.1| transcriptional regulator [Dehalococcoides sp. VS]
gi|270154736|gb|ACZ62574.1| transcriptional regulator [Dehalococcoides sp. VS]
Length = 148
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R + + + A+H + P I +A+ ISE +L ++ PL AG+V +VRG
Sbjct: 1 MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I + D+VKATE S +EC ++ C C +V K A
Sbjct: 61 ANGGFVLARDPKEIRLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLKIKKATD 119
Query: 120 DVLTQYSIECLVRN 133
++L ++E LV+
Sbjct: 120 EILDSINLENLVQQ 133
>gi|110636622|ref|YP_676829.1| BadM/Rrf2 family transcriptional regulator [Cytophaga hutchinsonii
ATCC 33406]
gi|110279303|gb|ABG57489.1| transcriptional regulator, BadM/Rrf2 family [Cytophaga hutchinsonii
ATCC 33406]
Length = 140
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 69/133 (51%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+ Y ++ L++ + + D I++I+E I + FL +IL L K GI+++ RG+
Sbjct: 2 LSKKAKYALKALLFLSKNTDRGVVLIAEISETEGIPKKFLEQILLELKKQGILQSKRGKE 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L +PA++I I VV+ + C + +C +C + ++ + +A
Sbjct: 62 GGYFLGKPANEIGIGQVVRIIDGPLAPIPCVSKMAYRRCDECIDEKTCEIRNLFLQVRDA 121
Query: 118 FFDVLTQYSIECL 130
++L + S+ L
Sbjct: 122 TIEILDKTSLSDL 134
>gi|182416626|ref|ZP_02948040.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
5521]
gi|237668057|ref|ZP_04528041.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182379518|gb|EDT77004.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
5521]
gi|237656405|gb|EEP53961.1| transcriptional regulator, BadM/Rrf2 family [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 142
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ +++ + + I+E ISE +L +I L K GI++ +G
Sbjct: 1 MKISTKGRYGLRALIDICVYSRNEMATVKSISERQNISERYLEQIFSSLRKGGIIKAKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L TI ++ E + + A + + + ++ KA
Sbjct: 61 AQGGYFLTDEPKNFTIAKILSVLEGDLLLIDVEAEDNN----MENYLIDNLWSKANEQIR 116
Query: 120 DVLTQYSIECLVRNRSS 136
+ ++E L +
Sbjct: 117 NFFCSMTLEDLSEGYKN 133
>gi|296131265|ref|YP_003638515.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena
DSM 20109]
gi|296023080|gb|ADG76316.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas flavigena
DSM 20109]
Length = 152
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DY +R A +A I FL +I+ L + G+V +VRG
Sbjct: 1 MRVSAKADYAVRACAELASRPGGESVPSEVLAAGQDIPTSFLERIMGDLRRGGVVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RPAD+IT+ DVV+A + + + GL V +
Sbjct: 61 RSGGYLLARPADEITVADVVRAVDGPLVTVRDVRPPGLTYEGSAA-GLLDVWVALRASVR 119
Query: 120 DVLTQYSIECLVRN--RSSIKKI 140
DVL +++ LV ++++++
Sbjct: 120 DVLDVVTLKDLVDRDLPAAVREL 142
>gi|253996434|ref|YP_003048498.1| BadM/Rrf2 family transcriptional regulator [Methylotenera mobilis
JLW8]
gi|253983113|gb|ACT47971.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera mobilis
JLW8]
Length = 146
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +TK TD +RVLMY D I++IA+ + L K++ L K V RG
Sbjct: 1 MQITKFTDLSLRVLMYLTQEVGDSMVTINEIAQQFDVPRNHLIKVVARLNKLKWVSATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL ++ + +V++ E + C C L G C L +L L +F+
Sbjct: 61 RSGGLRLGIQPSELKLGNVLRELENKTSLINCSE---PPCVLSGQCNLKEILDHGLQSFY 117
Query: 120 DVLTQYSIECLVRNRSS 136
+ + +Y+++ +V ++
Sbjct: 118 EEMNKYTLQSIVDQKTQ 134
>gi|222151511|ref|YP_002560667.1| hypothetical protein MCCL_1264 [Macrococcus caseolyticus JCSC5402]
gi|222120636|dbj|BAH17971.1| conserved hypothetical protein [Macrococcus caseolyticus JCSC5402]
Length = 140
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++++VR
Sbjct: 1 MKISTKGRYGLTLMISLAKRYDKGETVSLKTIAEENHLSDLYLEQLVGPLRNAGLIKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG +L + ++T ++++ E E + +A
Sbjct: 61 GARGGYKLMKHPKEVTTSEIIRLLEGPITPVEGIEDEPP--------AQKQLWIDIRDAV 112
Query: 119 FDVLTQYSIECLVRNRSS 136
VL + ++ L+ + S
Sbjct: 113 KKVLDETTLYDLMHYKES 130
>gi|84387613|ref|ZP_00990630.1| Predicted transcriptional regulator [Vibrio splendidus 12B01]
gi|84377458|gb|EAP94324.1| Predicted transcriptional regulator [Vibrio splendidus 12B01]
Length = 160
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A +ES +C + DC C ++ R + L ++ L++
Sbjct: 61 IAVGTVIAAVDESVDATKCHG--RADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLQ 124
>gi|326329630|ref|ZP_08195952.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
gi|325952626|gb|EGD44644.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
Length = 152
Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ ++DY +R L+ A D ++ A I FL IL L KAG+V + RG
Sbjct: 1 MRVSAKSDYALRALIEMAAREDGKAVSAEELGRAQEIPHGFLQAILADLRKAGVVISQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL R A +++ DV++A + + L V A ++
Sbjct: 61 QSGGWRLARKASDVSVADVIRAVDGPLVSVYGLRPEAVTYNERAD-VLQHVWIAARDSLR 119
Query: 120 DVLTQYSIECLVRNR 134
+V + SI L
Sbjct: 120 EVFEKVSIAELAARE 134
>gi|217965274|ref|YP_002350952.1| Rrf2 family protein [Listeria monocytogenes HCC23]
gi|217334544|gb|ACK40338.1| Rrf2 family protein [Listeria monocytogenes HCC23]
gi|307570170|emb|CAR83349.1| transcriptional regulator, Rrf2 family [Listeria monocytogenes L99]
Length = 138
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATRQNVSPTYLSKVLTMLVKAGFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|307293474|ref|ZP_07573318.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
chlorophenolicum L-1]
gi|306879625|gb|EFN10842.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
chlorophenolicum L-1]
Length = 141
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR
Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPSKFLTVILSELAREGLVATQRGRD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L I+ D+V+ T S + C + +C C L V+ + +
Sbjct: 62 GGYWLALAPVDISYGDIVRLTRGSLALTPCASRFAHETCTNCLPESECRLHRVMLRVRDE 121
Query: 118 FFDVLTQYSIEC 129
VL S+
Sbjct: 122 TAKVLDSISLAE 133
>gi|206901224|ref|YP_002251262.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
gi|206740327|gb|ACI19385.1| RRF2 protein family [Dictyoglomus thermophilum H-6-12]
Length = 144
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ + +YG+R ++Y + +SQI++ IS FL +++ L +A ++E+ +G
Sbjct: 3 RVSAKLEYGLRAMIYLGENYPHEKVTLSQISQKENISREFLAQLMSDLRRANLIESYKGI 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +P +IT+ ++ +A E + +C C +C SV R D
Sbjct: 63 TGGYTLTKPPKEITLKEIFEALEGPIQIIDCIHLENK-CERENTCYSKSVWRFIEKKIID 121
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
+L + ++E L+ +++
Sbjct: 122 LLGKLTLEDLINGTIRKEEVL 142
>gi|126641679|ref|YP_001084663.1| iscRSUA operon repressor [Acinetobacter baumannii ATCC 17978]
gi|169633489|ref|YP_001707225.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Acinetobacter baumannii SDF]
gi|169796093|ref|YP_001713886.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Acinetobacter baumannii AYE]
gi|169149020|emb|CAM86897.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Acinetobacter baumannii AYE]
gi|169152281|emb|CAP01191.1| repressor of the iscRSUA operon, involved in assembly of Fe-S
clusters [Acinetobacter baumannii]
Length = 147
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 61/124 (49%), Gaps = 3/124 (2%)
Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L+ A+ + +++IA IS +L ++ L + G+V +VRG GG L R AD
Sbjct: 3 ALLDLALQPTEQTITLAEIAARQSISVAYLEQLFAKLKRHGLVSSVRGANGGYHLARNAD 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
+IT+L++++A E+ C HK +C C + ++ + D L + ++ L+
Sbjct: 63 EITVLEIIEAVNETVDATRC--DHKGNCQNGAMCLTHDLWQELSHHIADYLAKITLANLI 120
Query: 132 RNRS 135
+
Sbjct: 121 SRDN 124
>gi|302879682|ref|YP_003848246.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
gi|302582471|gb|ADL56482.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
Length = 132
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 69/133 (51%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +D +R L+ + P I+++AE C IS+ L K++ LV A +V + RGR
Sbjct: 1 MQLTVSSDSALRTLICLG-KKNAPVTIAEVAEQCQISKSTLMKVVMTLVGANLVVSERGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + A I++ VV+ E S + EC CPL+ C L VL A FF
Sbjct: 60 NGGISLAQDAKDISVGSVVRLMENSLALVECMKDGTSTCPLLPKCRLKHVLYTAQENFFS 119
Query: 121 VLTQYSIECLVRN 133
L S+ L+R+
Sbjct: 120 TLDNTSLADLLRD 132
>gi|302339438|ref|YP_003804644.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Spirochaeta smaragdinae DSM 11293]
gi|301636623|gb|ADK82050.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
smaragdinae DSM 11293]
Length = 145
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + RT YG+R L+Y D ++ +I+EA +S+ +L +I++ L +GI+++ RG
Sbjct: 1 MKFSTRTRYGLRFLIYLGSEGGDRYVQLGEISEAEKVSQKYLEQIVRLLKPSGILDSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG ++ D++ + + + E C C C + + +
Sbjct: 61 VTGGYKIAVDPDKVRLDRLFELLEGDLAPINCLRED-EHCERASRCPTLPLWMELDDLVK 119
Query: 120 DVLTQYSIECLVRN 133
+ L + S+ L+RN
Sbjct: 120 NFLKERSLGDLIRN 133
>gi|114569861|ref|YP_756541.1| BadM/Rrf2 family transcriptional regulator [Maricaulis maris MCS10]
gi|114340323|gb|ABI65603.1| transcriptional regulator, BadM/Rrf2 family [Maricaulis maris
MCS10]
Length = 158
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + + A + P +S IA IS +L ++ L +A IV +VRG
Sbjct: 1 MKLSTKGRYAVMAMADLADAAEAGPVTLSDIASRQSISLSYLEQLFAKLRRADIVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A +I I D++ A +E C + K C + + +
Sbjct: 61 PGGGYRLSRTASEIRISDIILAVDEPLRATRC-SEAKGCLSDGRRCITHDLWDELGRHIY 119
Query: 120 DVLTQYSIECLVRNR 134
L+ ++E ++ R
Sbjct: 120 LYLSSVTLEDVLERR 134
>gi|313672582|ref|YP_004050693.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939338|gb|ADR18530.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
Length = 137
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 4/130 (3%)
Query: 1 MHLTKRTDYGIRVL-MYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +T ++ Y IR + A+ D P I +I++ IS +L ++ L K IV++VR
Sbjct: 1 MKITTKSRYAIRAIFAMIALGGDKEPVSIKKISDFEDISIKYLEQLFTKLRKNKIVKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG +P ++IT+ D+V + + +C S C C + V
Sbjct: 61 GTLGGYIFAKPLNEITLRDIVYSMDGPIKPVDCIDS--NGCEKSSVCAVNWVWFGLKKDI 118
Query: 119 FDVLTQYSIE 128
+ L + +++
Sbjct: 119 DNYLERITLQ 128
>gi|229523430|ref|ZP_04412837.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80]
gi|229339793|gb|EEO04808.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TM 11079-80]
Length = 160
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL +
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+I V+ A +ES +C + K DC C ++ R + D L ++ L+
Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMM 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|318059253|ref|ZP_07977976.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
sp. SA3_actG]
gi|318075281|ref|ZP_07982613.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
sp. SA3_actF]
Length = 151
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A H ++P +A + I FL ++ L +AG+V + RG
Sbjct: 1 MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++I++LDVV+A + A + P + GL ++ R D
Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYP-GPAAGLPALWRTLEERARD 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
+L + S+ L R +++
Sbjct: 120 LLGEVSLASLAREAPTMRA 138
>gi|83310947|ref|YP_421211.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82945788|dbj|BAE50652.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 149
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ +++ A H P I+ +AEA I + FL IL + G++ + +G+
Sbjct: 2 LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA++I + D+V+ + C + DC +C + +V++ +A
Sbjct: 62 GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCLDEAACTVRAVMQDVRDA 121
Query: 118 FFDVLTQYSIECL 130
+L S+ +
Sbjct: 122 IAAILDNTSLADM 134
>gi|261212153|ref|ZP_05926439.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341]
gi|260838761|gb|EEX65412.1| iron-sulfur cluster regulator IscR [Vibrio sp. RC341]
Length = 160
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL +
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+I V+ A +ES +C + K DC C ++ R + D L ++ L+
Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118
Query: 133 NRSSIK 138
+ I+
Sbjct: 119 DNEVIE 124
>gi|258619946|ref|ZP_05714986.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573]
gi|258627177|ref|ZP_05721965.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603]
gi|262165059|ref|ZP_06032796.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223]
gi|262172182|ref|ZP_06039860.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451]
gi|258580479|gb|EEW05440.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM603]
gi|258587679|gb|EEW12388.1| HTH-type transcriptional regulator iscR [Vibrio mimicus VM573]
gi|261893258|gb|EEY39244.1| iron-sulfur cluster regulator IscR [Vibrio mimicus MB-451]
gi|262024775|gb|EEY43443.1| iron-sulfur cluster regulator IscR [Vibrio mimicus VM223]
Length = 160
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL +
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+I V+ A +ES +C + K DC C ++ R + D L ++ L+
Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMV 118
Query: 133 NRSSIK 138
+ I+
Sbjct: 119 DNEVIE 124
>gi|134291578|ref|YP_001115347.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
vietnamiensis G4]
gi|134134767|gb|ABO59092.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
vietnamiensis G4]
Length = 170
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
MHLT TDY +RV+MY A+ + I +IA A IS L K++ L + G +ET R
Sbjct: 1 MHLTLYTDYTLRVMMYLALKYPGGGVSTIDEIAGAYGISRNHLTKVVHELSQLGFIETSR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNA 117
GR GG L R +QI++ ++V+ E+ F V C + C + C L L +A++A
Sbjct: 61 GRAGGACLARAPEQISVGEIVRTAEKDFAVVSCHDMTVAHGCTIFPVCNLRHRLYRAVDA 120
Query: 118 FFDVLTQYSI 127
F L ++
Sbjct: 121 FLHELDTMTL 130
>gi|260575577|ref|ZP_05843575.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
gi|259022220|gb|EEW25518.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
Length = 130
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/127 (37%), Positives = 73/127 (57%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
M+CA++ R +A+AC SE L +++ L + G + TVRGR GG+ L RP D+IT
Sbjct: 1 MFCAVNPGKVVRKQDVAQACNASENHLAQVIHLLAQKGFLHTVRGRSGGLMLGRPVDEIT 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ +V +A E + ECF+ H+ CPL+ SC L L KAL AF+ L ++ +VR
Sbjct: 61 VGEVFRAFEATLPFTECFSQHENSCPLIDSCRLKCALVKALAAFYATLDALTLRDMVREN 120
Query: 135 SSIKKIF 141
++ +
Sbjct: 121 GDLEGLL 127
>gi|330821657|ref|YP_004350519.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
BSR3]
gi|327373652|gb|AEA65007.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
BSR3]
Length = 177
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/143 (29%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
H++ +YG+ L+Y A + +AE + FL K+ L KAG+V G
Sbjct: 3 HISTGVEYGLHCLLYLAEPASGMREASVRDLAELQGVPLDFLAKLFTKLHKAGLVIATEG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
+GG L RPADQI++LDVV A + + EC F K G C + SV
Sbjct: 63 AKGGFALARPADQISVLDVVSAIDGDKSLFECREVRERCAVFEGTKPAWATSGVCAIHSV 122
Query: 111 LRKALNAFFDVLTQYSIECLVRN 133
+++A + L S+ +
Sbjct: 123 MQQAEKKMRESLASQSLADIAER 145
>gi|284050305|ref|ZP_06380515.1| transcriptional regulator, BadM/Rrf2 family protein [Arthrospira
platensis str. Paraca]
gi|291569875|dbj|BAI92147.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 147
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ A + + P + IA I +L K+L + + G+V +VRG
Sbjct: 1 MKLTTRGHYSVKALLDLAMLGSSGPVSVRAIASRQNIPAPYLEKLLIEMRRRGLVISVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L P QI++ +++A E+ ++H+ D + ++ +
Sbjct: 61 SQGGYKLAYPPAQISLGQILEAVGETIEP---LSNHQPDAEQIEDWVTFTLWNRLHEKLK 117
Query: 120 DVLTQYSIECL 130
+ L S+E L
Sbjct: 118 EALYSISLEDL 128
>gi|325831666|ref|ZP_08164883.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
HGA1]
gi|325486537|gb|EGC88986.1| putative HTH-type transcriptional regulator IscR [Eggerthella sp.
HGA1]
Length = 179
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +R+++ A + + +++E IS +L ++ +PLV+AG++ +VRG+
Sbjct: 38 VSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGKG 97
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + I DV++A E S C + CP G C
Sbjct: 98 GGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVIER 157
Query: 121 VLTQYSIECLVRNR 134
+ ++ L
Sbjct: 158 YVDGVTLADLAGEP 171
>gi|222085200|ref|YP_002543730.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
gi|221722648|gb|ACM25804.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
Length = 148
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALSALAQAEAGEPTMISDIATQQKIPKKFLEQILLDLKHQGIVISRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA++IT ++++ + C + DC +C + V + +A
Sbjct: 62 GGYLLRKPAEEITFGEILRIIDGPIAPLPCLSITAYRRCEDCDGEQTCEIRHVFARVADA 121
Query: 118 FFDVLTQYSIEC 129
VL +I
Sbjct: 122 TRKVLFSTTIAD 133
>gi|254515045|ref|ZP_05127106.1| Rrf2 family protein [gamma proteobacterium NOR5-3]
gi|219677288|gb|EED33653.1| Rrf2 family protein [gamma proteobacterium NOR5-3]
Length = 137
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 48/131 (36%), Positives = 73/131 (55%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+LM+CAIH RI +A A IS+ L K + L + G + T RGR GG++L
Sbjct: 1 MRILMHCAIHPGRIVRIQDVATAFGISKAHLLKSARHLGQLGYLSTSRGRNGGIQLGMAP 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
++I + V++ E+S ECF SH CP+VG C LT + RK L AF+ L S+ +
Sbjct: 61 ERIFVGKVIRELEDSGDFVECFNSHTNTCPIVGPCKLTGLFRKGLEAFYKELDDVSLADI 120
Query: 131 VRNRSSIKKIF 141
V + +++
Sbjct: 121 VGDGRALRDRL 131
>gi|86145582|ref|ZP_01063912.1| Predicted transcriptional regulator [Vibrio sp. MED222]
gi|85836553|gb|EAQ54679.1| Predicted transcriptional regulator [Vibrio sp. MED222]
Length = 160
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEASD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A +ES +C + DC C ++ R + L ++ L++
Sbjct: 61 IAVGTVIAAVDESVDATKCHG--RADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|332708195|ref|ZP_08428185.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L]
gi|332353021|gb|EGJ32571.1| transcriptional regulator, BadM/Rrf2 family [Lyngbya majuscula 3L]
Length = 147
Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA+ + +L K+L + +AG+V++VRG
Sbjct: 1 MKLTTRGHYSVKALLDLSLRPGYGPTSVRAIAKRQGLPAPYLEKLLIEMRRAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L QI++ +++A E+ ++ +
Sbjct: 61 AQGGYQLAHEPTQISLGKILEAVGETIEPLPHHTPDAG---QAEDWVTFTLWHRLHQKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L ++ L + S +
Sbjct: 118 EALYTITLADLYYDARSWQAAMG 140
>gi|16799715|ref|NP_469983.1| hypothetical protein lin0640 [Listeria innocua Clip11262]
gi|16802678|ref|NP_464163.1| hypothetical protein lmo0636 [Listeria monocytogenes EGD-e]
gi|224502064|ref|ZP_03670371.1| hypothetical protein LmonFR_06027 [Listeria monocytogenes FSL
R2-561]
gi|255030335|ref|ZP_05302286.1| hypothetical protein LmonL_16821 [Listeria monocytogenes LO28]
gi|16410025|emb|CAC98714.1| lmo0636 [Listeria monocytogenes EGD-e]
gi|16413080|emb|CAC95872.1| lin0640 [Listeria innocua Clip11262]
Length = 138
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|116253531|ref|YP_769369.1| Rrf2 family protein [Rhizobium leguminosarum bv. viciae 3841]
gi|115258179|emb|CAK09280.1| putative Rrf2 family protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 154
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPATEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVRN 133
+L ++E V +
Sbjct: 122 IAAILDNMTLEQFVAD 137
>gi|317488646|ref|ZP_07947188.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|316912252|gb|EFV33819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
Length = 147
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +R+++ A + + +++E IS +L ++ +PLV+AG++ +VRG+
Sbjct: 6 VSTKGRYALRLMVCVAQAGAEGKVALREVSEREDISLKYLEQLARPLVQAGLLRSVRGKG 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + I DV++A E S C + CP G C
Sbjct: 66 GGYALAQEPAAIGAGDVLRAVEGSTAPVACLDLQEGMACPRAGECTTVRFWAGLDEVIER 125
Query: 121 VLTQYSIECLVRNR 134
+ ++ L
Sbjct: 126 YVDGVTLADLAGEP 139
>gi|229505639|ref|ZP_04395149.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286]
gi|229510689|ref|ZP_04400168.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33]
gi|229513114|ref|ZP_04402580.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21]
gi|229517811|ref|ZP_04407255.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9]
gi|229525393|ref|ZP_04414798.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis
VL426]
gi|229530123|ref|ZP_04419513.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)]
gi|229608657|ref|YP_002879305.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236]
gi|229333897|gb|EEN99383.1| iron-sulfur cluster regulator IscR [Vibrio cholerae 12129(1)]
gi|229338974|gb|EEO03991.1| iron-sulfur cluster regulator IscR [Vibrio cholerae bv. albensis
VL426]
gi|229344526|gb|EEO09500.1| iron-sulfur cluster regulator IscR [Vibrio cholerae RC9]
gi|229350007|gb|EEO14961.1| iron-sulfur cluster regulator IscR [Vibrio cholerae TMA 21]
gi|229350654|gb|EEO15595.1| iron-sulfur cluster regulator IscR [Vibrio cholerae B33]
gi|229357862|gb|EEO22779.1| iron-sulfur cluster regulator IscR [Vibrio cholerae BX 330286]
gi|229371312|gb|ACQ61735.1| iron-sulfur cluster regulator IscR [Vibrio cholerae MJ-1236]
Length = 160
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL +
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGMDSYA 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+I V+ A +ES +C + K DC C ++ R + D L ++ L+
Sbjct: 61 ISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWRDLSSRITDFLNNITLGELMM 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|224824735|ref|ZP_03697842.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
gi|224603228|gb|EEG09404.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
Length = 153
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD G+RVLMY D P I +IAE +S L K++ + + G + T RG
Sbjct: 1 MQLTRFTDLGLRVLMYLTHRERDTPVTIPEIAERFAVSRNHLVKVVHFMAQQGWLVTTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L RPAD + DV++ E + +C C L C L S L L AFF
Sbjct: 61 KGGGLALARPADHYRLGDVIRTLEGMSDLIDCAE---PPCALRSGCQLKSALDVGLTAFF 117
Query: 120 DVLTQYSIECLVR 132
+ L ++++ V
Sbjct: 118 EALNRFTLASAVA 130
>gi|189499477|ref|YP_001958947.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides BS1]
gi|189494918|gb|ACE03466.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides BS1]
Length = 167
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY IR L+ H QI++ I FL +ILQ L K G+ + G
Sbjct: 3 MKVLTKNTDYAIRALLVLGTHEGEYVSARQISQQQGIPYQFLRRILQELNKNGLTTSREG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL + D I + DV++ + ++EC +I C SC L + +
Sbjct: 63 AHGGVRLEKNPDAIRVRDVIEIFQGKVELSECMFRKQI-CANRASCVLRHEIMRIEEIVS 121
Query: 120 DVLTQYSIECLVRNRSSIKK 139
Q ++ L+ + + +
Sbjct: 122 REFGQITLGKLLTDLTKLNA 141
>gi|210608482|ref|ZP_03287858.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787]
gi|210153058|gb|EEA84064.1| hypothetical protein CLONEX_00037 [Clostridium nexile DSM 1787]
Length = 142
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + +++ A+H+ ++ R+ IA +SE +L +I++ + ++ + R
Sbjct: 1 MRISTKGTYALEIIVDLAMHSSEEHLERLKNIAARRGLSEKYLERIVKAMKNENLILSTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG RL R + IT+LDV+++ E EC C V
Sbjct: 61 GAMGGYRLARRPEDITVLDVLRSVEGELAPVECLTKETNCGIACEDCLTRGVWADMWREI 120
Query: 119 FDVLTQYSIECLVRN 133
V S+ + +
Sbjct: 121 LGVTENVSVADITKE 135
>gi|154502552|ref|ZP_02039612.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149]
gi|153796744|gb|EDN79164.1| hypothetical protein RUMGNA_00365 [Ruminococcus gnavus ATCC 29149]
Length = 146
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 6/146 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R YG+R L+ IH++ P + Q+A IS +L ++ L KAGIV +V+G
Sbjct: 1 MKVSTRGRYGLRALVDMTIHSNNAPVSLVQVANRQKISLNYLEQVFGTLRKAGIVVSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R A+ IT+ +V++A E +F + + + D L V +
Sbjct: 61 AGGGYKLARDAESITVKEVLEALEGTFSIIDRIPGEEQDAVQEAIEKL--VWSRIDETVN 118
Query: 120 DVLTQYSIECLVRN-RSSIKKIFNAG 144
L Q +++ L R +++ NAG
Sbjct: 119 TFLEQKTLKMLADEYREKLEQ--NAG 142
>gi|119386877|ref|YP_917932.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119377472|gb|ABL72236.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 182
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +DY +R+L+Y A H D I A A IS L K+ L +AG + +VRGR
Sbjct: 48 MRLTSFSDYALRLLIYAARHPDRLVTIEGAALAYDISRSHLTKVANVLTRAGFLNSVRGR 107
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R + + +V++ TE AECF +I P L + +R AL AF
Sbjct: 108 SGGLELGRDPAALRLGEVLRVTEPDMAAAECFGPEEIRDPNRPG-ALDAAIRDALAAFLQ 166
Query: 121 VLTQYSIECLVRNRSS 136
V+ + ++ L+ +
Sbjct: 167 VMDRRTLADLLADEQE 182
>gi|295982422|pdb|3LWF|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
(Np_ From Listeria Innocua At 2.06 A Resolution
gi|295982423|pdb|3LWF|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
(Np_ From Listeria Innocua At 2.06 A Resolution
gi|295982424|pdb|3LWF|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
(Np_ From Listeria Innocua At 2.06 A Resolution
gi|295982425|pdb|3LWF|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
(Np_ From Listeria Innocua At 2.06 A Resolution
Length = 159
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGA 80
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L ++IT D+++ E + E + + + NA D
Sbjct: 81 HGGYVLNGDPEKITAGDIIRTLEGPIVLVESXEDEEA--------AQRELWTRXRNAVRD 132
Query: 121 VLTQYSIECLVRN 133
VL Q ++ L+++
Sbjct: 133 VLDQTTLSDLLKH 145
>gi|260773391|ref|ZP_05882307.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14]
gi|260612530|gb|EEX37733.1| iron-sulfur cluster regulator IscR [Vibrio metschnikovii CIP 69.14]
Length = 160
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+++ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALNSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAST 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+I V+ A +ES +C DC C ++ + D L ++ L+
Sbjct: 61 ISIGTVIAAVDESVDATKCHGKG--DCQGGTRCLTHTLWCDLSSRISDFLNNITLGELMV 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLQ 124
>gi|149369729|ref|ZP_01889581.1| transcriptional regulator, rrf2 family protein [unidentified
eubacterium SCB49]
gi|149357156|gb|EDM45711.1| transcriptional regulator, rrf2 family protein [unidentified
eubacterium SCB49]
Length = 138
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 5/137 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T YGI+ L Y A P +I+ IA + IS+ FL IL L KAG++ + +G+
Sbjct: 2 LSRKTKYGIKALTYLAQQEGNDPTQIAVIAVSENISQKFLESILLTLRKAGVLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + AD I I + + E + C + DCP +C + +++ + ++
Sbjct: 62 GGYYLLKDADSIKISQIYRVLEGPIAMVPCVSLNFYEKCDDCPDEDTCSVHNLMIQVRDS 121
Query: 118 FFDVLTQYSIECLVRNR 134
++L ++ ++ +
Sbjct: 122 TLNILENTTLADIISEQ 138
>gi|289767152|ref|ZP_06526530.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289697351|gb|EFD64780.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 148
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LTK TD +R +M A D P ++AE + K + L G+VE R
Sbjct: 1 MRLTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L + ++ +V+ E V +C CPL G+C L LR A AF
Sbjct: 61 GRGGGLTLTDLGRRASVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAF 118
Query: 119 FDVLTQYSIECLVR 132
+ L ++ LV
Sbjct: 119 YAALDPLTVTDLVA 132
>gi|332291390|ref|YP_004429999.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter
diaphorus 4H-3-7-5]
gi|332169476|gb|AEE18731.1| transcriptional regulator, BadM/Rrf2 family [Krokinobacter
diaphorus 4H-3-7-5]
Length = 141
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 6/140 (4%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+++T YGI+ L Y A D +I IAE+ IS+ FL I+ L KAG V + +G+
Sbjct: 2 LSRKTKYGIKALTYIAREQREDALVQIGTIAESENISQKFLESIMLTLKKAGFVSSRKGK 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
GG +L R I +++V++ E + C + DC +C + S++ + +
Sbjct: 62 GGGYQLRREPKDIKMVEVMRVLEGPVAMLPCVSLNYYERCADCKDEDACAVHSLMIQIRD 121
Query: 117 AFFDVLTQYSIECLVRNRSS 136
VL + ++ LV SS
Sbjct: 122 NTLLVLEKNTLADLVAAASS 141
>gi|114765192|ref|ZP_01444336.1| rrf2 family protein [Pelagibaca bermudensis HTCC2601]
gi|114542467|gb|EAU45494.1| rrf2 family protein [Roseovarius sp. HTCC2601]
Length = 145
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 47/129 (36%), Positives = 69/129 (53%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
M+CA + S+IA+ C SE L +++ L + G + T RGR GG+ L RPA+QI
Sbjct: 1 MHCAANTGRLVTKSEIAKRCNASENHLAQVINQLAQLGYLHTQRGRNGGLELSRPAEQIR 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
I DV +A E +AECFA CPL +C L L A NAF+ L +++ L+ +
Sbjct: 61 IGDVFRALEAPVPLAECFADVDNTCPLTEACRLKIALSDAANAFYATLDPITLDTLICDN 120
Query: 135 SSIKKIFNA 143
+ + I
Sbjct: 121 APLMDILAP 129
>gi|260906649|ref|ZP_05914971.1| BadM/Rrf2 family transcriptional regulator [Brevibacterium linens
BL2]
Length = 152
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T ++DY +R L+ A + + P ++ + I + FL IL L + IV +VRG
Sbjct: 1 MRVTTKSDYALRALIEIANVTDGEPISADELGKRQDIPKGFLQAILADLRRVEIVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL + A T+ DV++A + ++ L V A A
Sbjct: 61 KSGGWRLTKSASATTVADVIRAVDGPLVSIYGQRPEVVEYDDAAE-SLQQVWIAARFALR 119
Query: 120 DVLTQYSIECLVRN 133
DVL Q +IE L
Sbjct: 120 DVLEQVTIEQLAAK 133
>gi|257066428|ref|YP_003152684.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii
DSM 20548]
gi|256798308|gb|ACV28963.1| transcriptional regulator, BadM/Rrf2 family [Anaerococcus prevotii
DSM 20548]
Length = 133
Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 67/135 (49%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + Y A + D +S++++ +SE +L ++++ L G++ + RG
Sbjct: 1 MKLSTRGRYGLRAMCYLASNKDRGYISVSEMSDKLNLSENYLEQLIRLLKNDGLITSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG ++ R D+I++ +V++ E + +++C + C V +
Sbjct: 61 PKGGYKITRDLDEISVGEVLRVLEGNITMSDCVSGDHFC---DDKCDAYFVFDRIDKVIN 117
Query: 120 DVLTQYSIECLVRNR 134
+ + S++ ++
Sbjct: 118 EAVDSISLKNMINQE 132
>gi|114319885|ref|YP_741568.1| BadM/Rrf2 family transcriptional regulator [Alkalilimnicola
ehrlichii MLHE-1]
gi|114226279|gb|ABI56078.1| transcriptional regulator, BadM/Rrf2 family [Alkalilimnicola
ehrlichii MLHE-1]
Length = 153
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 62/137 (45%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + TDYGI +L A + ++A+ + + + KIL+ L +AGI+ + RG +
Sbjct: 3 RINRETDYGIGILTAMARAPEQRFSTVRLADQQGLPQPMVAKILKNLARAGILVSYRGAK 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RPA QI++ +++ A E EC C +C ++ +
Sbjct: 63 GGYGLARPARQISVAEIITALEGPIAFTECVEEGVDACQYGDACTTSANWWRISQVVQHA 122
Query: 122 LTQYSIECLVRNRSSIK 138
L S++ + ++
Sbjct: 123 LGSISLKDMSEPVVPLR 139
>gi|260776733|ref|ZP_05885628.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC
BAA-450]
gi|260607956|gb|EEX34221.1| iron-sulfur cluster regulator IscR [Vibrio coralliilyticus ATCC
BAA-450]
Length = 155
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGEDAHS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I I V+ A +ES +C + + DC C ++ R + D L ++ L+
Sbjct: 61 IAIGTVIAAVDESVDATKC--NGRADCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|94495944|ref|ZP_01302523.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
sp. SKA58]
gi|94424636|gb|EAT09658.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
sp. SKA58]
Length = 141
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T Y IR L + A + P +++IA I FL IL L + G+V T RGR
Sbjct: 2 LSQKTRYAIRALQHLADRYRQGPVPLNEIATRQNIPAKFLTVILSELSREGLVATQRGRD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L ++ D+V+ T S + C + +C C L ++ + +
Sbjct: 62 GGYWLALAPVDVSYGDIVRLTRGSLALTPCASRFAHESCTNCLPESECRLHRIMLRVRDE 121
Query: 118 FFDVLTQYSIEC 129
VL S+
Sbjct: 122 TAKVLDGISLAE 133
>gi|119357736|ref|YP_912380.1| BadM/Rrf2 family transcriptional regulator [Chlorobium
phaeobacteroides DSM 266]
gi|119355085|gb|ABL65956.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides DSM 266]
Length = 141
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 68/141 (48%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+H++++ +YG+ + Y A + ++A+ S+ FL K +Q L KAGI+ +V+G
Sbjct: 2 LHVSRKFEYGLHAVSYLATRGAGRVVTVKEMADDIGFSQEFLSKAMQSLKKAGIIASVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L +P IT+ D+ +A E + C + C + C + N
Sbjct: 62 VKGGYTLAKPLSGITVADIGEAIEGKPHLTRCASDLY--CEIASKCTHKQYMNLLQNKIQ 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ + ++E L+ S+ ++
Sbjct: 120 EFMGATTLETLIEGDDSLPQL 140
>gi|108760111|ref|YP_629412.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
gi|108463991|gb|ABF89176.1| Rrf2 family protein [Myxococcus xanthus DK 1622]
Length = 172
Score = 105 bits (262), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 3/147 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K TDYGI ++ A ++A + K+L+ L++A +V + RG
Sbjct: 2 LRMSKMTDYGIVLMTELARAEGDTRTTRELAARTRVPLPSASKVLKSLLQAALVVSHRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L RPA ++ + ++V A E + EC S C L C + R +A
Sbjct: 62 NGGYGLARPAHELPLAELVTALEGPVALTECGVHTSGGAPCELESVCQVRGHWRLINDAI 121
Query: 119 FDVLTQYSIECLVRNRSSI-KKIFNAG 144
+ L + ++ L+ + +++ G
Sbjct: 122 QEALGRLTLADLIAPAPRVPERLVGLG 148
>gi|255037279|ref|YP_003087900.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
DSM 18053]
gi|254950035|gb|ACT94735.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
DSM 18053]
Length = 147
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+ Y ++ L A P IS IAE I + FL IL L G++++ +G+
Sbjct: 2 ISKKAKYALKALKVLAEQYGKGPVLISYIAEKEKIPKKFLEAILLDLRNNGVLQSQKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L P ++ V++ + A C + DC +C L +VL + +A
Sbjct: 62 GGYLLRVPPGEVNFSKVLRIIDGPIAPALCVSMFFYGKCDDCKDEETCSLRTVLERWRDA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL + ++ L++ ++
Sbjct: 122 NLAVLDKTTLSDLLQAENA 140
>gi|148265911|ref|YP_001232617.1| BadM/Rrf2 family transcriptional regulator [Geobacter
uraniireducens Rf4]
gi|146399411|gb|ABQ28044.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
uraniireducens Rf4]
Length = 153
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 66/142 (46%), Gaps = 5/142 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T Y ++ ++Y A ++ P I+ +A I + FL IL L GI+++ +G+
Sbjct: 2 ISKKTKYALKAIIYLARVYDKGPILIADLARDERIPKKFLELILLTLKNNGILQSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L + I++ V++ E C + +C +CG+ +++ +A
Sbjct: 62 GGYYLGKSPKDISMGTVIRILEGPLAPVPCVSETAYAKCDECVDERTCGIRLMMKDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+L ++ ++ ++
Sbjct: 122 MAKILDGTTLADVLERTEKAEQ 143
>gi|152981815|ref|YP_001352304.1| transcriptional regulator [Janthinobacterium sp. Marseille]
gi|151281892|gb|ABR90302.1| transcriptional regulator [Janthinobacterium sp. Marseille]
Length = 152
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +D G+RVLMY A + P ++++A + L K++ L K G ++ VRG
Sbjct: 1 MKLTRFSDIGLRVLMYLARESRSPSVTVAEVALQFDVPHNHLVKVVGMLAKMGWIDAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L D + I +++ E +C I C L G C L + L+ ++AF+
Sbjct: 61 RNGGISLAASPDTLHIGSILRVLEGDAEAIDC---EGIGCRLSGDCRLRNALKIGVDAFY 117
Query: 120 DVLTQYSIECLVRNRS 135
+ + +Y++ +V +
Sbjct: 118 NAMDEYTLADIVSGNT 133
>gi|297199432|ref|ZP_06916829.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces sviceus ATCC 29083]
gi|197713030|gb|EDY57064.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces sviceus ATCC 29083]
Length = 152
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R ++ A+ P + IA I FL IL L + GIV++ RG
Sbjct: 1 MRISARADYAVRAVLELAVRQGTEPVKAEAIAAVQDIPHKFLEGILGDLRRGGIVDSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A +T+ DV++A + ++ L +
Sbjct: 61 GGGGYRLAREASAVTVADVIRAVDGPIVSVRGERPTGLEYTGSAQ-PLLPLWIALRANVR 119
Query: 120 DVLTQYSIECLVRN--RSSIKKI 140
+L +I + + ++++
Sbjct: 120 KILEGVTIADIAGDALPEPVRRL 142
>gi|197334970|ref|YP_002155373.1| Rrf2 family protein [Vibrio fischeri MJ11]
gi|197316460|gb|ACH65907.1| Rrf2 family protein [Vibrio fischeri MJ11]
Length = 155
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 58/123 (47%), Gaps = 3/123 (2%)
Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H + P ++ I+E IS +L ++ L KAG+V +VRG GG RL A+Q
Sbjct: 1 MLDVALHAQEGPVPLADISERQGISLSYLEQLFSRLRKAGLVASVRGPGGGYRLGLKAEQ 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A +ES +C C C ++ R + L ++ L++
Sbjct: 61 IAVGMVISAVDESVDATKCHGKEG--CQGGTRCLTHTLWRDLSSRISTFLDGITLGELMQ 118
Query: 133 NRS 135
+
Sbjct: 119 DNE 121
>gi|78043860|ref|YP_361240.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
gi|77995975|gb|ABB14874.1| rrf2 family protein [Carboxydothermus hydrogenoformans Z-2901]
Length = 143
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+LT+ TDY R ++Y A +IA I FL KIL+ L +AGIV++ RG
Sbjct: 5 MNLTQATDYAFRAVLYLARKGNGEVVEAQEIAGRENIPLRFLLKILRQLGQAGIVKSYRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + ++IT+LDVV+A E + C G C + L N
Sbjct: 65 VGGGFSLAKDPEEITLLDVVEAVEGPVKINRCLIDPQYCTSQRGGRCAIHQELSLIQNDI 124
Query: 119 FDVLTQYSIECLVRNRSSI 137
L S + ++ ++
Sbjct: 125 IARLGTVSFKKILEREQNL 143
>gi|262395130|ref|YP_003286984.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25]
gi|262338724|gb|ACY52519.1| iron-sulfur cluster regulator IscR [Vibrio sp. Ex25]
Length = 158
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 3/127 (2%)
Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 3 AMLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAH 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
I I V+ A +ES +C K DC C ++ R + D L ++ L+
Sbjct: 63 SIAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELM 120
Query: 132 RNRSSIK 138
+ ++
Sbjct: 121 TDNEVLE 127
>gi|54025656|ref|YP_119898.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54017164|dbj|BAD58534.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 152
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 68/137 (49%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L++ TD G+R +M A+ + + +A SE ++ K + L + G+V++ R
Sbjct: 1 MQLSRFTDLGLRAMMRLAVGGAAEERVTVRLVARQVNASEHYVAKAVTKLAELGLVDSHR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L T+ +V+ E + V +C H CPL +C L +L A F
Sbjct: 61 GRTGGIFLTDRGRAATVGQIVRGLEGAAEVVDCAGEH--PCPLAAACRLRRMLADAQEMF 118
Query: 119 FDVLTQYSIECLVRNRS 135
+ L +Y++ LV R+
Sbjct: 119 YRELDKYTLRDLVDERT 135
>gi|46906881|ref|YP_013270.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47091594|ref|ZP_00229390.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
gi|224498715|ref|ZP_03667064.1| Rrf2 family protein [Listeria monocytogenes Finland 1988]
gi|226223260|ref|YP_002757367.1| hypothetical protein Lm4b_00657 [Listeria monocytogenes Clip81459]
gi|254824091|ref|ZP_05229092.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
gi|254828298|ref|ZP_05232985.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
gi|254932089|ref|ZP_05265448.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
gi|254994106|ref|ZP_05276296.1| hypothetical protein LmonocytoFSL_14839 [Listeria monocytogenes FSL
J2-064]
gi|255023288|ref|ZP_05295274.1| hypothetical protein LmonocyFSL_07190 [Listeria monocytogenes FSL
J1-208]
gi|255520380|ref|ZP_05387617.1| hypothetical protein LmonocFSL_03972 [Listeria monocytogenes FSL
J1-175]
gi|290892831|ref|ZP_06555822.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
gi|46880147|gb|AAT03447.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47019913|gb|EAL10650.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
gi|225875722|emb|CAS04425.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|258600690|gb|EEW14015.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
gi|290557643|gb|EFD91166.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
gi|293583644|gb|EFF95676.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
gi|293593322|gb|EFG01083.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
gi|328467204|gb|EGF38284.1| hypothetical protein LM1816_00045 [Listeria monocytogenes 1816]
gi|328475713|gb|EGF46459.1| hypothetical protein LM220_02615 [Listeria monocytogenes 220]
gi|332311056|gb|EGJ24151.1| Rrf2 family transcriptional regulator [Listeria monocytogenes str.
Scott A]
Length = 138
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|298491131|ref|YP_003721308.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708]
gi|298233049|gb|ADI64185.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708]
Length = 147
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA+ I +L K+L + +AG+V+++RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPVSVKAIAKRQDIPAPYLEKLLIEMRRAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L QI+I +++A E+ + ++ ++
Sbjct: 61 SIGGYQLAIKPAQISIGQILEAVGENITD---LPLNNPRPAQAEDWVTFTLWQRLNQKLR 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L ++ L + S +
Sbjct: 118 EALYSVTLADLYYDARSWQASLG 140
>gi|296392911|ref|YP_003657795.1| BadM/Rrf2 family transcriptional regulator [Segniliparus rotundus
DSM 44985]
gi|296180058|gb|ADG96964.1| transcriptional regulator, BadM/Rrf2 family [Segniliparus rotundus
DSM 44985]
Length = 151
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 5/143 (3%)
Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD G+RV ++ A + + +AE + K++ L G+VE+ RG
Sbjct: 1 MQLTKFTDLGLRVTMLLAAAPSGRQLSTAHVAEQMRVPYTHAAKVVARLAGLGVVESARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL A +I + + E V EC CPL C L LR+A AFF
Sbjct: 61 RAGGLRLAESASSRSIGWIARRLEGDGEVVEC--EGANPCPLREGCRLRGALRQAQEAFF 118
Query: 120 DVLTQYSIECLVRNRSS--IKKI 140
VL +++ ++R + ++++
Sbjct: 119 HVLDGWTVAEMIRTPTEPILREL 141
>gi|194333370|ref|YP_002015230.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
aestuarii DSM 271]
gi|194311188|gb|ACF45583.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
aestuarii DSM 271]
Length = 160
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L TK TDY IR L+ A H + +IAE I FL +LQ LV+AG + + G
Sbjct: 1 MQLLTKHTDYAIRALLTLAGHGEGYLSARRIAEEQQIPYQFLRGLLQELVRAGFISSREG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV+L + + I++ +V+ + S ++EC ++ C +C L + K
Sbjct: 61 AHGGVKLIKDPETISVREVIALFQGSIELSECMFRKQM-CVNRANCVLRHQILKIERMVS 119
Query: 120 DVLTQYSIECLVRN 133
+ +I L+ +
Sbjct: 120 AEFDKVTIGSLLHD 133
>gi|313672577|ref|YP_004050688.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939333|gb|ADR18525.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
Length = 132
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 79/133 (59%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +TK +DY +RV+ + A + ++++E C + + FL KILQ LVK+GI+E+ RG
Sbjct: 1 MKITKASDYALRVVGFFATAEKNRYYMRNELSEICNVPDSFLGKILQNLVKSGILESERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+RGG ++ + +++T+ D++++ E + EC C + G+C + ++L +
Sbjct: 61 KRGGFKMSKNPEEVTVYDIIRSVEGDVVINECLVEG-NTCKISGNCKIHNILDQVRCNLI 119
Query: 120 DVLTQYSIECLVR 132
+ L ++SI LVR
Sbjct: 120 NELKRFSISDLVR 132
>gi|239916899|ref|YP_002956457.1| rrf2 family protein, putative transcriptional regulator
[Micrococcus luteus NCTC 2665]
gi|281414646|ref|ZP_06246388.1| rrf2 family protein, putative transcriptional regulator
[Micrococcus luteus NCTC 2665]
gi|239838106|gb|ACS29903.1| rrf2 family protein, putative transcriptional regulator
[Micrococcus luteus NCTC 2665]
Length = 157
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TD +RVLM A QIA+ + + K + L + G +E +RGR
Sbjct: 1 MKLSAYTDVCLRVLMTLAAAEGERVTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAFF 119
GG + + ++V+A V +C CP C L L +A AF
Sbjct: 61 NGGATIAEAGLDQRVGELVRALSSRDEVIDCAGHETGVPCPFAADCRLREALARAREAFM 120
Query: 120 DVLTQYSIECLVR 132
L ++ LVR
Sbjct: 121 AELDLLTVRDLVR 133
>gi|332716226|ref|YP_004443692.1| transcriptional regulator [Agrobacterium sp. H13-3]
gi|325062911|gb|ADY66601.1| transcriptional regulator [Agrobacterium sp. H13-3]
Length = 149
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + +++IA I + FL IL L +GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSKMPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVRN 133
+L ++ V
Sbjct: 122 IATILDNMTLAQFVAK 137
>gi|86141875|ref|ZP_01060399.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217]
gi|85831438|gb|EAQ49894.1| Rrf2 family protein [Leeuwenhoekiella blandensis MED217]
Length = 137
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YG++ L Y A H P +I IA++ IS+ FL I+ L KAG + + +G+
Sbjct: 2 LSKKTKYGLKALAYVAKHKGEDPVQIGAIAKSENISQKFLESIMLTLRKAGFLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L R ++I +++V++ E + C + DCP +C + S++ + ++
Sbjct: 62 GGYYLRRQPEEIKMVEVMRILEGPVSMVPCVSLNFYEKCDDCPDETTCSVHSLMVQLRDS 121
Query: 118 FFDVLTQYSIECLVRN 133
VL + ++ L+
Sbjct: 122 NLAVLNKNTLADLIAE 137
>gi|17988524|ref|NP_541157.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
gi|17984317|gb|AAL53421.1| rrf2 family protein [Brucella melitensis bv. 1 str. 16M]
Length = 162
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 21 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 80
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 81 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 139
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 140 IANVLDHRTLAD 151
>gi|294629169|ref|ZP_06707729.1| Rrf2 family protein [Streptomyces sp. e14]
gi|292832502|gb|EFF90851.1| Rrf2 family protein [Streptomyces sp. e14]
Length = 155
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M ++ R DY +R ++ A+ + P + IA IS FL IL L +AG+V +
Sbjct: 1 MRISARADYAVRAVLELAVRHGDAPEAPVKAETIAAEQGISHKFLEGILGDLRRAGVVTS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
RG GG L RPA IT+ DV++A + + L +
Sbjct: 61 RRGGGGGYALARPASAITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWIALRA 119
Query: 117 AFFDVLTQYSIECLV 131
+L ++ +
Sbjct: 120 NVRRILEGVTLADIA 134
>gi|297568160|ref|YP_003689504.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio
alkaliphilus AHT2]
gi|296924075|gb|ADH84885.1| transcriptional regulator, BadM/Rrf2 family [Desulfurivibrio
alkaliphilus AHT2]
Length = 130
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY IR + A H I IA I FL KILQ L +A IVE+ RG
Sbjct: 1 MQITRATDYAIRCVYCLARHPGELWMIDDIAREMEIPNSFLAKILQKLARAQIVESQRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL R ++I++ DVV ATE + C + C V C + V +
Sbjct: 61 RGGFRLARAPEEISLHDVVVATEGPVAMNVCTLEGER-CDRVEKCRVHPVWVTIRQEVEE 119
Query: 121 VLTQYSIECLV 131
L + +
Sbjct: 120 ALQKRKFADFL 130
>gi|148979595|ref|ZP_01815600.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3]
gi|145961680|gb|EDK26977.1| predicted transcriptional regulator [Vibrionales bacterium SWAT-3]
Length = 160
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQKSPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAGD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A +ES +C + DC C ++ R + L ++ L++
Sbjct: 61 IAVGTVIAAVDESVDATKCHG--RADCQGGSRCLTHTLWRDLSSRISSFLNDITLGELMK 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|322419855|ref|YP_004199078.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
gi|320126242|gb|ADW13802.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
Length = 153
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+T YG++ L+Y A D P I+ +A I + FL IL L +GI+++ +GR
Sbjct: 2 ISKKTKYGLKALIYLARKYDQGPILIADLAREERIPKKFLENILLSLKNSGILQSRKGRG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L RP D+IT V+ E C + +C +CG+ V++ +
Sbjct: 62 GGYYLGRPPDKITFGQAVRVMEGPLAPVPCVSEMAYAKCTECGDELTCGIRLVMKDVRDE 121
Query: 118 FFDVLTQYSIECLVRN----RSSIKKIFN 142
+L ++ +++ ++ K + +
Sbjct: 122 MARILDGTTLADVLKKVEQAEANQKDVLD 150
>gi|78485133|ref|YP_391058.1| BadM/Rrf2 family transcriptional regulator [Thiomicrospira
crunogena XCL-2]
gi|78363419|gb|ABB41384.1| transcriptional regulator, BadM/Rrf2 family [Thiomicrospira
crunogena XCL-2]
Length = 145
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK+TD+ RVL+Y A + I I++ IS+ L K++Q LV G+V +VRG
Sbjct: 1 MQLTKQTDFAFRVLIYLASKKTGELSNIQMISDRYEISKSHLMKVVQKLVSHGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+ L + +IT+ +V++ E + C C + C L L +A N +
Sbjct: 61 QHGGIYLEKELHEITLREVIELMEATLTPVNCDEPG---CKIKEVCQLKIYLVEAQNQYL 117
Query: 120 DVLTQYSIECLVRN 133
L Q+++ +V +
Sbjct: 118 TYLEQFTLADIVND 131
>gi|325263739|ref|ZP_08130472.1| Rrf2 family protein [Clostridium sp. D5]
gi|324030777|gb|EGB92059.1| Rrf2 family protein [Clostridium sp. D5]
Length = 142
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + ++ A+H+ ++ + IA +SE +L +I++ L + GIV++VR
Sbjct: 1 MKMSTKGQYALEIVADLAMHSSKEHLESLKNIANRRDLSEKYLERIIKALREKGIVKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L + + + +L+V+ A E C G C + +
Sbjct: 61 GAYGGYCLEKAPEDLMVLEVLTAVEGELTPVHCLTRESNCGIDCGLCPTRNTWSDMWSVM 120
Query: 119 FDVLTQYSIECLVRNRSS 136
+ Q ++ +VR
Sbjct: 121 KGAVEQVTVADIVRAADP 138
>gi|297623328|ref|YP_003704762.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
DSM 17093]
gi|297164508|gb|ADI14219.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
DSM 17093]
Length = 146
Score = 104 bits (261), Expect = 3e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT++ Y ++ L++ A + P I+ IAE+ IS+ FL IL L GI+++ +GR
Sbjct: 4 LTQKAKYALKALVFLAKAYGKGPVLIANIAESEGISQKFLELILLELKNHGILQSKKGRG 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RP ++I + V++ E + C + S +C +C + +V+ + A
Sbjct: 64 GGYWLNRPPEEIYLGHVIRIFEGALAPLPCASKRYYSRCEECADEATCEVRAVMLEVKKA 123
Query: 118 FFDVLTQYSIEC 129
VL S++
Sbjct: 124 TLGVLDTTSLKD 135
>gi|303327401|ref|ZP_07357842.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3]
gi|302862341|gb|EFL85274.1| Rrf2 family protein [Desulfovibrio sp. 3_1_syn3]
Length = 148
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + RT YG+R L+ A D ++ Q+A IS +L +I++ L GI+ VRG
Sbjct: 3 MRFSTRTRYGLRFLLRLAAQPKDSLLQLGQVAREENISSGYLEQIVRALKPLGILRAVRG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + +I + DV E C + C C ++
Sbjct: 63 SGGGYALAKDPSEINMEDVFLHLEGEIAPVRCLTKGR-CCQREQQCSTRGFWKELDGHIR 121
Query: 120 DVLTQYSIECLVRNRS 135
L Q+++ ++ +
Sbjct: 122 GFLQQHTLREIIESEK 137
>gi|187478523|ref|YP_786547.1| hypothetical protein BAV2031 [Bordetella avium 197N]
gi|115423109|emb|CAJ49640.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 145
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD+G+RVLMY D I +IAE IS L K++ + + G V R
Sbjct: 1 MQLTRFTDFGLRVLMYLTQCRDREKAVTIPEIAERFAISRNHLVKVVHFMSQQGWVAATR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG+ L RPA + D+++ E + +C C L G C L VL +L F
Sbjct: 61 GKGGGLALARPAASYRLGDLLRVLEHQGSLVDCAE---PPCALQGVCRLAGVLNDSLRGF 117
Query: 119 FDVLTQYSIECLV 131
+D L Q+S+ LV
Sbjct: 118 YDSLNQHSLAELV 130
>gi|83310153|ref|YP_420417.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82944994|dbj|BAE49858.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 149
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ +++ A H P I+ +AEA I + FL IL + G++ + +G+
Sbjct: 2 LSSKAKYGLKAMVHLARHEGLGPCLIADVAEAEHIPKKFLDAILLEMKNQGLLSSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA++I + D+V+ + C + DCP +C + +V++ +A
Sbjct: 62 GGYVLARPAERIMVGDIVRILDGPLAPIPCVSRTAYRPCEDCPDEAACTVRAVMQDVRDA 121
Query: 118 FFDVLTQYSIECL 130
+ S+ +
Sbjct: 122 IAAIPDNTSLADM 134
>gi|167758028|ref|ZP_02430155.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704]
gi|167663925|gb|EDS08055.1| hypothetical protein CLOSCI_00366 [Clostridium scindens ATCC 35704]
Length = 166
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 65/141 (46%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A+++ P ++ +A IS +L ++ L KAG+V +++G
Sbjct: 20 MKISTKGRYGLRALVDLAVYSQGEPTALAMVAARQKISLNYLEQVFGQLRKAGLVRSIKG 79
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG L +PA IT+ ++++ E F + + S V +
Sbjct: 80 PSGGYLLAKPAKDITVKEILEVLEGPFSIV--GEDLDRSSLDAMQLAIKSLVWDEIDARI 137
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ + + ++E LV S +
Sbjct: 138 NEFMEKRTLEHLVNEYRSYQD 158
>gi|313610249|gb|EFR85521.1| putative transcriptional regulator [Listeria monocytogenes FSL
F2-208]
Length = 138
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASGISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|330466710|ref|YP_004404453.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328809681|gb|AEB43853.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
maris AB-18-032]
Length = 146
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +R+ M + + ++A+ + + K++Q L G++ T+RGR
Sbjct: 1 MKLNRSTDMAMRIAM-LTAASGRRTTVDELAQRLALPRNHVAKVVQRLQHLGVLVTIRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV T+ VV+A E V +C CPL +C L LR+A AF
Sbjct: 60 SGGVAFAADGATYTVGQVVRAFEGDGEVVDC---EAPACPLRAACRLRIELRRAQEAFLA 116
Query: 121 VLTQYSIECLVRNRS 135
VL + S+ LV + +
Sbjct: 117 VLDRVSLADLVDSPT 131
>gi|159185735|ref|NP_357183.2| hypothetical protein Atu3423 [Agrobacterium tumefaciens str. C58]
gi|159140869|gb|AAK89968.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 149
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/147 (22%), Positives = 61/147 (41%), Gaps = 5/147 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + +++IA I + FL IL L +GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLPQGETAFVTEIATRNNIPKKFLDTILLELRNSGILRSKKGPN 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSKLPSEIMIGQVIRTLDGPLAPIRCASRTAFEACDDCDDPETCQVRVSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
+L ++ V ++ AG
Sbjct: 122 IATILDNMTLAQFVAKDGQDQRSIPAG 148
>gi|160901533|ref|YP_001567114.1| BadM/Rrf2 family transcriptional regulator [Petrotoga mobilis SJ95]
gi|160359177|gb|ABX30791.1| transcriptional regulator, BadM/Rrf2 family [Petrotoga mobilis
SJ95]
Length = 150
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/147 (23%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-------HNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
M LT ++ Y IR L + I++IAE+ +S+ FL KI L KA I
Sbjct: 1 MSLTVKSCYAIRGLYEMYKLQNRNEDEKNTKISIAKIAESSGVSQEFLAKIFAELKKAKI 60
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
V + +G+ GG + ++I + ++V+ E +C + +C +C + V ++
Sbjct: 61 VSSEKGKFGGFYFTKAPEKINLSEIVEVLEVPLNSYDCVSGG--ECENQKNCPVEFVWKR 118
Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKI 140
+A F+ L++ +++ ++ + +
Sbjct: 119 VQDAIFNELSKITLKDVIEYGEKKEAL 145
>gi|68171749|ref|ZP_00545098.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str.
Sapulpa]
gi|67998829|gb|EAM85532.1| Protein of unknown function UPF0074 [Ehrlichia chaffeensis str.
Sapulpa]
Length = 524
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIH------NDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M +T R Y + ++ A + P R+S IA + +SE +L +I+ L K G++
Sbjct: 1 MLITTRLRYAVMFMVKLAQEYYTLKGSTQPKRMSHIANSQSLSEGYLEQIIVKLKKQGLI 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+ +G GG L + + IT+ ++++ E+ + C C ++
Sbjct: 61 NSTKGPGGGYSLNKSPNSITLNLILESIGENIKITRCKNHLIGCLSNNARCITHNLWDNI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N L S+E ++ N
Sbjct: 121 GNHIKKYLNSISLEDILNNN 140
>gi|315281262|ref|ZP_07869928.1| putative transcriptional regulator [Listeria marthii FSL S4-120]
gi|313615086|gb|EFR88564.1| putative transcriptional regulator [Listeria marthii FSL S4-120]
Length = 138
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQMD 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|162148831|ref|YP_001603292.1| Rrf2 family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|209545421|ref|YP_002277650.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|161787408|emb|CAP57003.1| putative transcriptional regulator, rrf2 family [Gluconacetobacter
diazotrophicus PAl 5]
gi|209533098|gb|ACI53035.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 161
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY + L+ A D +++A I E + K+L+ L +V ++RG
Sbjct: 2 LKLSKLTDYAVVALVRLA-QEDEVMTSPALSQATGIPEPTVAKVLKILAVHDLVVSLRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RP + I++ V+ A + + C C CG+ +A
Sbjct: 61 RGGYRLARPLNDISVARVITAVDGPISLTACVDGGG--CDTRPFCGVCGQWDAVNDAIRG 118
Query: 121 VLTQYSIECL 130
L+ ++ +
Sbjct: 119 ALSAITLADM 128
>gi|323136514|ref|ZP_08071596.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
49242]
gi|322398588|gb|EFY01108.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
49242]
Length = 157
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 5/131 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + ++ IA A I + FL IL L AG V + +G+
Sbjct: 2 LTKKAKYGLKAMVHLAGVEPGQTALVADIATANQIPKKFLDAILGELRNAGFVHSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L R +I++ ++V+A + +C + DC C + V+ +A +A
Sbjct: 62 GGYMLARLPSEISVGNLVRALDGPLAPIQCASKTIYRRCDDCVDEKHCSVRLVMMEARDA 121
Query: 118 FFDVLTQYSIE 128
VL S+E
Sbjct: 122 IAKVLDNTSLE 132
>gi|218885727|ref|YP_002435048.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218756681|gb|ACL07580.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 189
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ Y R+L+ A+H D P S++AE IS F+ KI++ L AG+V +VR
Sbjct: 1 MRISSTVHYASRLLVNLALHCPQDGPLSASELAEHTGISVKFIEKIIRQLRTAGMVRSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L D +T+ DV++ E C DC C + A A
Sbjct: 61 GAAGGHVLTMNPDDVTLGDVLRVVEGGVQPPNCCVG--ADCDDTP-CRCKAAWTSAAKAL 117
Query: 119 FDVLTQYSIECLVRNRS 135
+ L Q+++ ++
Sbjct: 118 EETLDQFTLTDIMHGAE 134
>gi|161621161|ref|YP_001595047.1| rrf2 family protein [Brucella canis ATCC 23365]
gi|163845438|ref|YP_001623093.1| Rrf2 family transcriptional regulator protein [Brucella suis ATCC
23445]
gi|161337972|gb|ABX64276.1| rrf2 family protein [Brucella canis ATCC 23365]
gi|163676161|gb|ABY40271.1| Transcriptional regulator, Rrf2 family protein [Brucella suis ATCC
23445]
Length = 166
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 85 GGFCLTHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 143
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 144 IANVLDHRTLAD 155
>gi|159184477|ref|NP_353841.2| hypothetical protein Atu0819 [Agrobacterium tumefaciens str. C58]
gi|159139787|gb|AAK86626.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 146
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++++ Y +R L+ A + P +IS IA I + FL +IL + K IVE+ RG++
Sbjct: 2 ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L RPA IT +V++ + C + DC C + V + +A
Sbjct: 62 GGYLLARPASDITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 121
Query: 118 FFDVLTQYSIECLVR 132
++L ++ V
Sbjct: 122 TRNILFNTTVADAVA 136
>gi|83594728|ref|YP_428480.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
ATCC 11170]
gi|83577642|gb|ABC24193.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
ATCC 11170]
Length = 160
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++++ YG R L A RI IAE I FL +IL L G+V + RG+ G
Sbjct: 2 ISQKAKYGFRALFALADAEGGQLRIEDIAERQRIPRKFLEQILLDLKHHGLVVSFRGKNG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G L R I+ +V++ + C + DC +C + V A +
Sbjct: 62 GYALRRDPKDISFTEVLRLIDGPIAPLPCLSRTAYRACEDCEGETACRMRLVFGAAYDRM 121
Query: 119 FDVLTQYSIECLVRNR 134
+VL S+ + R
Sbjct: 122 LEVLETTSLGDAMNGR 137
>gi|269962422|ref|ZP_06176772.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3]
gi|269832918|gb|EEZ87027.1| HTH-type transcriptional regulator iscR [Vibrio harveyi 1DA3]
Length = 155
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQQTPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGAEAHS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I I V+ A +ES +C K DC C ++ R + D L ++ L+
Sbjct: 61 IAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLQ 124
>gi|257462826|ref|ZP_05627232.1| RRF2 family protein [Fusobacterium sp. D12]
gi|317060455|ref|ZP_07924940.1| rrf2 family protein [Fusobacterium sp. D12]
gi|313686131|gb|EFS22966.1| rrf2 family protein [Fusobacterium sp. D12]
Length = 138
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R
Sbjct: 1 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL +IT+ V ++ V +C H+ C CG T + K +
Sbjct: 61 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQC-KETICGSTCIWSKLDH 119
Query: 117 AFFDVLTQYSIECLVRN 133
A +L+ ++E + N
Sbjct: 120 ALTKILSDTTLEDFINN 136
>gi|297566671|ref|YP_003685643.1| BadM/Rrf2 family transcriptional regulator [Meiothermus silvanus
DSM 9946]
gi|296851120|gb|ADH64135.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus silvanus
DSM 9946]
Length = 174
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 33/154 (21%), Positives = 61/154 (39%), Gaps = 10/154 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ Y + L Y +++ A + +L +IL LV G+V + +G
Sbjct: 1 MRLSATDIYAFKALGYLGTQPPGRYVGSEELSRATGVRRTYLVRILAALVGQGLVASKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTS-VLRKALNA 117
GG L RP +I + DV++A + C + C G C + + K +A
Sbjct: 61 AGGGYALPRPPQEINLRDVIRAVDGPIAPLSCVSLKWPKACGEEGRCHARNQIWIKVRDA 120
Query: 118 FFDVLTQYSIECLVRNRSS-------IKKIFNAG 144
+ L++ S+ L + ++ + G
Sbjct: 121 VLEALSRVSVADLAEDFRQGVIYDECLEHLLPPG 154
>gi|227823095|ref|YP_002827067.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234]
gi|227342096|gb|ACP26314.1| putative Rrf2 family protein [Sinorhizobium fredii NGR234]
Length = 151
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + +++IA I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLASLGPGETAFVTEIATRNNIPKKFLDTILLELRNTGILRSKKGPN 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA +I I V++A + C + DC C + + + +A
Sbjct: 62 GGYSLSKPASEIMIGQVIRALDGPLAPIRCASRTAFEACDDCNDPVGCQVRLSMTEVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
+L ++ V +
Sbjct: 122 IATILDNMTLAQFVAKDRA 140
>gi|167629120|ref|YP_001679619.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
modesticaldum Ice1]
gi|167591860|gb|ABZ83608.1| transcriptional regulator, rrf2 family, putative [Heliobacterium
modesticaldum Ice1]
Length = 147
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T++ +Y I L+ A+ + IA+ I FL +I+ L + G V++ RG
Sbjct: 1 MEITRKAEYAIAALLDLALLPPGESTLSKDIAKRQAIPSNFLPQIMAALSRHGWVDSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL A+ IT+ V++ E + C CP C L V +A +A
Sbjct: 61 AGGGVRLAVEAETITLQAVIEVIEGPIAINRCLVGGG-SCPNQAGCPLHHVWARAQSAML 119
Query: 120 DVLTQYSIECLVRNRSSI 137
DVL + +I LV + +I
Sbjct: 120 DVLAKTTIADLVTAKRAI 137
>gi|307544373|ref|YP_003896852.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581]
gi|307216397|emb|CBV41667.1| hypothetical protein HELO_1783 [Halomonas elongata DSM 2581]
Length = 169
Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L++ TDY V+ A H + P+ +++AEA + + K L+ LV+AG++E+ RG
Sbjct: 18 LKLSRLTDYAAVVMAQIARHPEQPHAAAELAEAVSLPHPTVSKTLKMLVRAGLLESRRGA 77
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L RPA +I+ D++ A E + EC + + DC LV CG++ ++ A
Sbjct: 78 QGGYSLARPASRISASDIISAIEGPVAMTEC-SQAEGDCDLVSVCGVSDNWQRVSLAVRT 136
Query: 121 VLTQYSIECLVR 132
+L ++ L
Sbjct: 137 LLDSVTLAHLAD 148
>gi|294852949|ref|ZP_06793621.1| transcriptional regulator [Brucella sp. NVSL 07-0026]
gi|294818604|gb|EFG35604.1| transcriptional regulator [Brucella sp. NVSL 07-0026]
Length = 166
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 143
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 144 IANVLDHRTLAD 155
>gi|254702363|ref|ZP_05164191.1| Rrf2 family transcriptional regulator protein [Brucella suis bv. 3
str. 686]
gi|260568733|ref|ZP_05839202.1| RRF2 family protein [Brucella suis bv. 4 str. 40]
gi|261752927|ref|ZP_05996636.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
gi|54112367|gb|AAN34279.2| RrF2 family protein [Brucella suis 1330]
gi|260155398|gb|EEW90479.1| RRF2 family protein [Brucella suis bv. 4 str. 40]
gi|261742680|gb|EEY30606.1| transcriptional regulator [Brucella suis bv. 3 str. 686]
Length = 143
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 62 GGFCLTHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 120
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 121 IANVLDHRTLAD 132
>gi|88799892|ref|ZP_01115464.1| predicted transcriptional regulator [Reinekea sp. MED297]
gi|88777323|gb|EAR08526.1| predicted transcriptional regulator [Reinekea sp. MED297]
Length = 150
Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A++ P ++ I+ IS +L ++ L K G+V +VRG GG RL
Sbjct: 1 MLDLALNEQSGPINLADISHRQGISLSYLEQLFSKLRKQGLVSSVRGPGGGYRLGDERSA 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I++ VV A ES +C K C C + + D L S++ LV
Sbjct: 61 ISVAAVVDAVSESMDATKC--QGKSGCQGGEICLTHHLWQDLSEQIHDFLEDISLQDLV- 117
Query: 133 NRSSIKKI 140
+RS I+ +
Sbjct: 118 DRSEIRSV 125
>gi|227484972|ref|ZP_03915288.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC
51172]
gi|227237127|gb|EEI87142.1| possible transcriptional regulator [Anaerococcus lactolyticus ATCC
51172]
Length = 133
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R YG+R + Y A + D +S+I+E +SE +L ++++ L K G++++ RG
Sbjct: 1 MKLSTRGRYGLRAICYIAENQDKGFIPVSEISEKLNLSENYLEQLVRVLKKDGLIKSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG ++ ITI ++++ E +EC + K DC C + K
Sbjct: 61 PKGGYKIKSDLSSITIGQILRSLEGDMTTSECVSG-KFDCS--EKCDAYDLFSKLDYLIN 117
Query: 120 DVLTQYSIECLVRNR 134
+ ++E +V++
Sbjct: 118 AAIDSITLENIVKHE 132
>gi|325104343|ref|YP_004273997.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
gi|324973191|gb|ADY52175.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
Length = 148
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 70/147 (47%), Gaps = 5/147 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+T Y ++ LM A + + P I++IA+ + + FL IL L + I+ + G
Sbjct: 2 LTKKTKYAVKALMALARNGENKPMLIAEIAKQEGLPKRFLEAILLDLKRGQILGSRMGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA +I +++V++ + + C + +C +C + ++ + +A
Sbjct: 62 GGYFLVKPASEIMVVNVIRILDGPIALLPCVSLNFYQRCEECVDEVTCSIREMMGRVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
+++ SI LV + + G
Sbjct: 122 SIEIMGHTSIADLVAKEKELGGNLSEG 148
>gi|256371980|ref|YP_003109804.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008564|gb|ACU54131.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
ferrooxidans DSM 10331]
Length = 151
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY R L+ A+H D P ++++A + + +L +IL L AG+V + RG
Sbjct: 1 MRVSTRGDYAARALLSLALHPSDQPTSVAELARRTGLPQPYLEQILLTLKGAGLVRSKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
GG L R A++IT+ ++ A + V + H C G C L V + +
Sbjct: 61 AGGGYTLGRSAEEITLAQIIAAVDGPITVGDFKEPHEDGACDHEGQCALLEVWAEVGHHM 120
Query: 119 FDVLTQYSIECLVRNRSSIK-KIFNA 143
D L Y++ +VR ++ + A
Sbjct: 121 ADHLRSYTLAEMVRRARGLRGDVLGA 146
>gi|254853166|ref|ZP_05242514.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
gi|300764439|ref|ZP_07074432.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
gi|258606518|gb|EEW19126.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
gi|300514793|gb|EFK41847.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
Length = 138
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG +E+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLVGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|184199973|ref|YP_001854180.1| Rrf2 family DNA-binding protein [Kocuria rhizophila DC2201]
gi|183580203|dbj|BAG28674.1| putative Rrf2 family DNA-binding protein [Kocuria rhizophila
DC2201]
Length = 176
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +D +RVL+ + +IAE + K + L G++ + RG
Sbjct: 1 MRLTAFSDIALRVLLLMGGLPQGTMLSTQRIAEGVGAPYHHVAKTVARLRGMGLLCSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGV L +++ V++ E + EC A CPL C L L A AF+
Sbjct: 61 RAGGVALTAEGCGVSVGRVLRELEADTAIVECEADE-AACPLNHGCRLRRALNSAREAFY 119
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV R
Sbjct: 120 RELDGVTVTDLVNPRQ 135
>gi|254504883|ref|ZP_05117034.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
gi|222440954|gb|EEE47633.1| Transcriptional regulator superfamily [Labrenzia alexandrii DFL-11]
Length = 144
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ +D+ +R+LM + +D P + ++ +++ + KI+ L KAG +ET RGR
Sbjct: 9 MRLSQASDFALRLLMAIS-QSDAPQTVDKLTAQLGLAKSHVMKIVAQLAKAGYLETTRGR 67
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+R+ + AD I I DVV+ E V C CP + C L + +A AF D
Sbjct: 68 GGGIRIAKEADDIRIGDVVRLIEPDLGVVACLKDEPASCPFLPRCALKGAMARATEAFLD 127
Query: 121 VLTQYSIECLVRNRSSI 137
L + ++ ++ I
Sbjct: 128 SLNEQTLGSILAGTQKI 144
>gi|170723498|ref|YP_001751186.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
W619]
gi|169761501|gb|ACA74817.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
W619]
Length = 150
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H P ++ I+E IS +L ++ L ++ +V +VRG GG +L R +
Sbjct: 1 MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSSLVSSVRGPGGGYQLSRGMET 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A ES C DC +C + + L+ S+ LV
Sbjct: 61 IQVAQVIDAVNESVDATRCQGLG--DCHAGDTCLTHHLWCDLSQQIHEFLSGISLADLVM 118
Query: 133 NRS 135
R
Sbjct: 119 RRE 121
>gi|256826636|ref|YP_003150595.1| rrf2 family protein, putative transcriptional regulator
[Cryptobacterium curtum DSM 15641]
gi|256582779|gb|ACU93913.1| rrf2 family protein, putative transcriptional regulator
[Cryptobacterium curtum DSM 15641]
Length = 150
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 8/144 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R L+ H P + IA+ IS+ +L +++ L GI++ RG
Sbjct: 1 MQISTKGRYALRFLLDLCQHQGTGPVPLKDIAQRQGISKKYLEQVIALLNPTGILQVTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-------GLTSVLR 112
+GG RL + IT+ DV+ TE F +D + L +
Sbjct: 61 YQGGYRLAKAPRDITVADVLAVTESGFTAGAASTGTNVDTTERSASLLSSNETMLEPIWE 120
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
D L + S++ ++ +
Sbjct: 121 GLEQTVNDYLAEISLQDIIDRYTP 144
>gi|159899482|ref|YP_001545729.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
aurantiacus ATCC 23779]
gi|159892521|gb|ABX05601.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
aurantiacus ATCC 23779]
Length = 142
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + +YG+R L A H + + +IAE ISE +L ++L L KAG++ +VRG
Sbjct: 1 MRLSTKGEYGVRALFDLAQHYGEGLVQSHEIAERQAISENYLNQLLIALRKAGLITSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L RP I++LD + E + L V +
Sbjct: 61 PQGGHQLARPPQAISLLDAILVLEGPLLPT----PEGASLDTFDAGLLGEVWGELRAVIE 116
Query: 120 DVLTQYSIECLVRNRSS 136
L++ +I L + +
Sbjct: 117 GHLSEMTIADLCQRKHQ 133
>gi|73749368|ref|YP_308607.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1]
gi|147669978|ref|YP_001214796.1| BadM/Rrf2 family transcriptional regulator [Dehalococcoides sp.
BAV1]
gi|289433326|ref|YP_003463199.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Dehalococcoides sp. GT]
gi|73661084|emb|CAI83691.1| putative transcriptional regulator [Dehalococcoides sp. CBDB1]
gi|146270926|gb|ABQ17918.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp.
BAV1]
gi|288947046|gb|ADC74743.1| transcriptional regulator, BadM/Rrf2 family [Dehalococcoides sp.
GT]
Length = 148
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R + + + A+H + P I +A+ ISE +L ++ PL AG+V +VRG
Sbjct: 1 MKLSARGRHSMEAMFDLAVHYGEGPILIRDVAQRRKISEQYLAQLFIPLRIAGLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I + D+VKATE S +EC ++ C C +V + A
Sbjct: 61 ANGGFVLARDPKEIKLSDIVKATEGSTSPSECVDDPRV-CWRGEGCITRNVWLRIKKATD 119
Query: 120 DVLTQYSIECLVRN 133
++L +++ LV+
Sbjct: 120 EILDSINLDNLVQQ 133
>gi|329848850|ref|ZP_08263878.1| rrf2 family protein transcriptional regulator family protein
[Asticcacaulis biprosthecum C19]
gi|328843913|gb|EGF93482.1| rrf2 family protein transcriptional regulator family protein
[Asticcacaulis biprosthecum C19]
Length = 145
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 4/140 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+ + Y ++ L++ A QIAEA I + FL ILQ L + GI+++ RG G
Sbjct: 2 LSMKAKYALKALIHMAQSTSPTLPSKQIAEAEDIPQKFLDNILQELRQNGIIDSKRGIFG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
G L RPA I + DV++ + C + DC +C L ++R +A
Sbjct: 62 GYFLARPATDIYLGDVIRVIDGPLAPIRCASLTAYQKCDDCRDETTCHLRRLMRDVRDAM 121
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+L ++ LV S I+
Sbjct: 122 SAILDGRCLQDLVTAPSLIE 141
>gi|295135463|ref|YP_003586139.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda
SM-A87]
gi|294983478|gb|ADF53943.1| Rrf2-like transcriptional regulator protein [Zunongwangia profunda
SM-A87]
Length = 135
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 68/133 (51%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L + A + P + S+IA++ IS FL IL L K+G + + +G+
Sbjct: 2 LSKKTKYGIKALTFIARQPERNPVQTSEIAKSENISLKFLESILLILRKSGFLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + I + +++ E + C + DCP +C + ++ + ++
Sbjct: 62 GGYYLIKEPEDIKMTAIIRVLEGPIAMVPCVSLNYYEKCEDCPDEQTCAVHKLMIQVRDS 121
Query: 118 FFDVLTQYSIECL 130
+VL + ++ L
Sbjct: 122 TLNVLGENTLADL 134
>gi|254455677|ref|ZP_05069106.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211]
gi|207082679|gb|EDZ60105.1| transcriptional regulator [Candidatus Pelagibacter sp. HTCC7211]
Length = 130
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 2/129 (1%)
Query: 12 RVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
L+ A ++ P + I+ IS +L +I L K IV+++RG +GG L +
Sbjct: 1 MALVDLARFDNINPVSLRDISLRQGISLDYLEQIFSKLKKDQIVKSIRGTQGGYVLSKKP 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIEC 129
++I + ++ A +E +C K C + C ++ + N + S+E
Sbjct: 61 NEIKLTNIFHAVDEKVKTVQCKKESKKGCNGKATKCVTHNLWDELENHINSFFDKKSLED 120
Query: 130 LVRNRSSIK 138
L+++ + +
Sbjct: 121 LLKSSTENR 129
>gi|162454034|ref|YP_001616401.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56']
gi|161164616|emb|CAN95921.1| hypothetical protein sce5758 [Sorangium cellulosum 'So ce 56']
Length = 232
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 43/137 (31%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+R L A HND P +I +I+E I FL +I Q L KAG++ + RG
Sbjct: 83 KLSNKGRYGVRALFDIAFHNDGRPTQIREISERELIPARFLEQIFQDLKKAGLISSKRGP 142
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG L RPA +I++ DVV+A E V + + + T+V A
Sbjct: 143 RGGYHLARPASEISLGDVVRALEGPVAVIAPDDDGRPEGSPLDPP--TAVFHDLALAIER 200
Query: 121 VLTQYSIECLVRNRSSI 137
SI + +
Sbjct: 201 CFDSVSIADVCERGVEL 217
>gi|291287793|ref|YP_003504609.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
gi|290884953|gb|ADD68653.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
Length = 134
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ +DY IR L++ A S++A C I + FL KILQ L K+ I+ + RG
Sbjct: 1 MKVTRASDYAIRALIHMAHKPLGTTFMRSELAAECEIPDSFLGKILQNLAKSEILSSERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG ++ + +IT+ D++ A E + +C C LV SC ++ +
Sbjct: 61 KKGGFKVAKNPAEITVYDIISAIEGDIALNKCIFDEDF-CSLVHSCTAHNMWSDIQDNLV 119
Query: 120 DVLTQYSIECLVRNR 134
++L YS+ L
Sbjct: 120 EMLKSYSLAKLTEKY 134
>gi|148653426|ref|YP_001280519.1| BadM/Rrf2 family transcriptional regulator [Psychrobacter sp.
PRwf-1]
gi|148572510|gb|ABQ94569.1| transcriptional regulator, BadM/Rrf2 family [Psychrobacter sp.
PRwf-1]
Length = 173
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R Y + L+ AI + +S IA+ IS +L ++ L KAG+V +
Sbjct: 1 MRLTTRGRYAVTALLDLAIQDGDSTNAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L +P I ++ ++ A +ES + +C C +
Sbjct: 61 RGASGGYHLAKPLADIDVMTIITAVDESVNAM--QCGGQGNCQGGAMCLTHDLWCALSKH 118
Query: 118 FFDVLTQYSIECLVR 132
L S+E L++
Sbjct: 119 IEQYLKNISLEQLLQ 133
>gi|86741718|ref|YP_482118.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
gi|86568580|gb|ABD12389.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
Length = 143
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT+ TD +R LM A D + +++A + + KI+Q L + +V TVRGR
Sbjct: 1 MHLTQSTDLALRALMLTATREDR-LTVRDLSKALDVPLTHMAKIVQRLQRLDLVVTVRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV L A Q+T+ +V+A E + C CPL +C L +LR+A F
Sbjct: 60 TGGVLLAPGATQVTVGHIVRALEGTDEFVSCDG---PPCPLRCACRLRPLLRRAQENFLV 116
Query: 121 VLTQYSIECLVRNR 134
L + ++ L
Sbjct: 117 TLDEVTLAELTDEP 130
>gi|46578685|ref|YP_009493.1| transcriptional regulator, rrf2 protein [Desulfovibrio vulgaris
str. Hildenborough]
gi|120603749|ref|YP_968149.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio vulgaris
DP4]
gi|46448097|gb|AAS94752.1| transcriptional regulator, rrf2 protein, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|120563978|gb|ABM29722.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
DP4]
gi|311232556|gb|ADP85410.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
RCH1]
Length = 165
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG R+L+ A+H + P + +A IS+ +L K+ +PL +AG++ + RG
Sbjct: 1 MRILTNSRYGTRMLLDIALHQRERPVLMKDVAARLSISQKYLEKLSRPLKEAGLLVSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA +IT+ DVV+ E + C C C + ++ +A F
Sbjct: 61 PTGGHMLGRPAVEITVGDVVRVMEGGDELVGCGRDE-AACSHAPGCLTRMIWKECSHAMF 119
Query: 120 DVLTQYSIECLVR 132
L + + L+R
Sbjct: 120 ARLDAITFDELLR 132
>gi|189023190|ref|YP_001932931.1| RRF2 family protein [Brucella abortus S19]
gi|225686866|ref|YP_002734838.1| Rrf2 family transcriptional regulator [Brucella melitensis ATCC
23457]
gi|237817484|ref|ZP_04596475.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
str. 2308 A]
gi|254706516|ref|ZP_05168344.1| transcriptional regulator, Rrf2 family protein [Brucella
pinnipedialis M163/99/10]
gi|256261998|ref|ZP_05464530.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9]
gi|260757261|ref|ZP_05869609.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|260883065|ref|ZP_05894679.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
gi|297250169|ref|ZP_06933870.1| transcriptional regulator, Rrf2 family protein [Brucella abortus
bv. 5 str. B3196]
gi|189021764|gb|ACD74485.1| RRF2 family protein [Brucella abortus S19]
gi|225642971|gb|ACO02884.1| transcriptional regulator, Rrf2 family protein [Brucella melitensis
ATCC 23457]
gi|237787319|gb|EEP61536.1| rrf2 family protein (transcriptional regulator) [Brucella abortus
str. 2308 A]
gi|260677369|gb|EEX64190.1| transcriptional regulator [Brucella abortus bv. 6 str. 870]
gi|260872593|gb|EEX79662.1| transcriptional regulator [Brucella abortus bv. 9 str. C68]
gi|263091482|gb|EEZ16018.1| RRF2 family protein [Brucella melitensis bv. 2 str. 63/9]
gi|297174038|gb|EFH33402.1| transcriptional regulator, Rrf2 family protein [Brucella abortus
bv. 5 str. B3196]
Length = 166
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 143
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 144 IANVLDHRTLAD 155
>gi|257065352|ref|YP_003145024.1| rrf2 family protein, putative transcriptional regulator [Slackia
heliotrinireducens DSM 20476]
gi|256793005|gb|ACV23675.1| rrf2 family protein, putative transcriptional regulator [Slackia
heliotrinireducens DSM 20476]
Length = 133
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R++ A + P + +AE IS +L ++ +PLV + ++ + RG
Sbjct: 1 MLVSTKGRYAMRLMTDVARYQCLGPVPLRDVAERENISVKYLEQLARPLVHSDLLHSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG RL RPA +I D+++A E + C DCP C +
Sbjct: 61 KGGGYRLTRPASEIKAGDILRAAEGTTIPVACNG-LLEDCPRTTECASINFWVGLDRVIE 119
Query: 120 DVLTQYSIECLV 131
D + ++ ++
Sbjct: 120 DYVDAVTLADII 131
>gi|168186835|ref|ZP_02621470.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
botulinum C str. Eklund]
gi|169295240|gb|EDS77373.1| iron-sulfur cluster assembly transcription factor IscR [Clostridium
botulinum C str. Eklund]
Length = 131
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/126 (23%), Positives = 63/126 (50%), Gaps = 3/126 (2%)
Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ AI+ + P I IA+ ISEL+L ++ PL KA +++++RG +GG L +
Sbjct: 1 MVDLAINYGETPMSIKSIAKRQNISELYLEQLFSPLRKAKLIKSIRGAQGGYVLNKDPKD 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I++ D++ E ++ C + +C + C + +K + +V +++ +
Sbjct: 61 ISVSDIINVLEGPIEISSCVDTG--ECDNMDICPTRLLWKKIKKSIDEVTESVTLQDMAN 118
Query: 133 NRSSIK 138
+ +K
Sbjct: 119 DYKKLK 124
>gi|269965159|ref|ZP_06179293.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B]
gi|269830145|gb|EEZ84372.1| HTH-type transcriptional regulator iscR [Vibrio alginolyticus 40B]
Length = 155
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H+ P ++ I+E IS +L ++ L KAG+V +VRG GG RL A
Sbjct: 1 MLDVALHSQQNPVPLADISERQGISLSYLEQLFSKLRKAGLVASVRGPGGGYRLGADAHS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I I V+ A +ES +C K DC C ++ R + D L ++ L+
Sbjct: 61 IAIGTVIAAVDESVDATKC--QGKGDCQGGTRCLTHTLWRDLSSRISDFLNNITLGELMT 118
Query: 133 NRSSIK 138
+ ++
Sbjct: 119 DNEVLE 124
>gi|119513040|ref|ZP_01632097.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia
spumigena CCY9414]
gi|119462320|gb|EAW43300.1| Transcriptional Regulator, BadM/Rrf2 family protein [Nodularia
spumigena CCY9414]
Length = 147
Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V ++RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPGYGPASVRSIALRQDIPAPYLEKLLIEMRRAGLVTSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L QI+I +++A E+ ++ ++
Sbjct: 61 SIGGYQLALKPAQISIGQILEAVGETITRLPHHTPTPA---QTEDWVTFTLWQRLNQKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
+ L ++ L + S +
Sbjct: 118 EALYSITLADLYYDARSWQASLG 140
>gi|269120156|ref|YP_003308333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Sebaldella termitidis ATCC 33386]
gi|268614034|gb|ACZ08402.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
ATCC 33386]
Length = 144
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 4/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+ ++M A + + IA + +SE +L +I+Q L K ++ + R
Sbjct: 1 MRISTKGRYGLYLMMELAGNCTKSRCISLKNIAASQGVSEKYLEQIVQILNKEKLLISTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG +L +I++ +++ E++ + EC + + C V K
Sbjct: 61 GAYGGYKLASKPSEISVGTILRCLEKTIDIPECEETADKSVFVSIVC--KEVYEKIDEVV 118
Query: 119 FDVLTQYSIECLVRNRSS 136
++L ++E L+
Sbjct: 119 NNLLNNITLEDLLNKYDE 136
>gi|327539861|gb|EGF26464.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
Length = 141
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +TDY +R LMY A + ++ +A IS + K++ L + G V ++RG
Sbjct: 1 MRLTTQTDYALRTLMYLATR-ESRANVAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + +T+ ++ E + C A C + C LT VL A D
Sbjct: 60 GGGIELAVRPEDVTVGQIIATVESDMHLLPCVAGDH-GCVIHSFCKLTGVLANAERIQMD 118
Query: 121 VLTQYSIECLVRNRSSIKK 139
L ++ ++ R + +
Sbjct: 119 YLNSVTLAEVIPTRKQLDR 137
>gi|222086332|ref|YP_002544865.1| hypothetical protein Arad_2848 [Agrobacterium radiobacter K84]
gi|221723780|gb|ACM26936.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 156
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ IA I + FL IL L AG++ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIASRNNIPKKFLDTILLELRNAGVLRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L R A +I I V++ + C + DC C + + + +A
Sbjct: 62 GGYSLSRLASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPERCHVRRSMTEVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
D+L ++E V
Sbjct: 122 IADILDNMTLEQFVA 136
>gi|62317939|ref|YP_223792.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941]
gi|254691631|ref|ZP_05154885.1| RfF2 family protein [Brucella abortus bv. 6 str. 870]
gi|254695073|ref|ZP_05156901.1| RfF2 family protein [Brucella abortus bv. 3 str. Tulya]
gi|254698170|ref|ZP_05159998.1| RfF2 family protein [Brucella abortus bv. 2 str. 86/8/59]
gi|254699245|ref|ZP_05161073.1| RfF2 family protein [Brucella suis bv. 5 str. 513]
gi|254711200|ref|ZP_05173011.1| RfF2 family protein [Brucella pinnipedialis B2/94]
gi|254711800|ref|ZP_05173611.1| RfF2 family protein [Brucella ceti M644/93/1]
gi|254714868|ref|ZP_05176679.1| RfF2 family protein [Brucella ceti M13/05/1]
gi|254731614|ref|ZP_05190192.1| RfF2 family protein [Brucella abortus bv. 4 str. 292]
gi|256030172|ref|ZP_05443786.1| RfF2 family protein [Brucella pinnipedialis M292/94/1]
gi|256059824|ref|ZP_05450018.1| RfF2 family protein [Brucella neotomae 5K33]
gi|256112195|ref|ZP_05453116.1| RfF2 family protein [Brucella melitensis bv. 3 str. Ether]
gi|256256818|ref|ZP_05462354.1| RfF2 family protein [Brucella abortus bv. 9 str. C68]
gi|260544123|ref|ZP_05819944.1| RRF2 family protein [Brucella abortus NCTC 8038]
gi|260564084|ref|ZP_05834569.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
gi|260759374|ref|ZP_05871722.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|260762617|ref|ZP_05874949.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
gi|261215425|ref|ZP_05929706.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
gi|261216557|ref|ZP_05930838.1| transcriptional regulator [Brucella ceti M13/05/1]
gi|261313970|ref|ZP_05953167.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
gi|261318791|ref|ZP_05957988.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|261319428|ref|ZP_05958625.1| transcriptional regulator [Brucella ceti M644/93/1]
gi|261323803|ref|ZP_05963000.1| transcriptional regulator [Brucella neotomae 5K33]
gi|261749683|ref|ZP_05993392.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
gi|265987202|ref|ZP_06099759.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|265993622|ref|ZP_06106179.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|62198132|gb|AAX76431.1| RfF2 family protein [Brucella abortus bv. 1 str. 9-941]
gi|260097394|gb|EEW81268.1| RRF2 family protein [Brucella abortus NCTC 8038]
gi|260151727|gb|EEW86820.1| RRF2 family protein [Brucella melitensis bv. 1 str. 16M]
gi|260669692|gb|EEX56632.1| transcriptional regulator [Brucella abortus bv. 4 str. 292]
gi|260673038|gb|EEX59859.1| transcriptional regulator [Brucella abortus bv. 2 str. 86/8/59]
gi|260917032|gb|EEX83893.1| transcriptional regulator [Brucella abortus bv. 3 str. Tulya]
gi|260921646|gb|EEX88214.1| transcriptional regulator [Brucella ceti M13/05/1]
gi|261292118|gb|EEX95614.1| transcriptional regulator [Brucella ceti M644/93/1]
gi|261298014|gb|EEY01511.1| transcriptional regulator [Brucella pinnipedialis B2/94]
gi|261299783|gb|EEY03280.1| transcriptional regulator [Brucella neotomae 5K33]
gi|261302996|gb|EEY06493.1| transcriptional regulator [Brucella pinnipedialis M163/99/10]
gi|261739436|gb|EEY27362.1| transcriptional regulator [Brucella suis bv. 5 str. 513]
gi|262764492|gb|EEZ10524.1| transcriptional regulator [Brucella melitensis bv. 3 str. Ether]
gi|264659399|gb|EEZ29660.1| transcriptional regulator [Brucella pinnipedialis M292/94/1]
gi|326411283|gb|ADZ68347.1| RRF2 family protein [Brucella melitensis M28]
gi|326554572|gb|ADZ89211.1| RRF2 family protein [Brucella melitensis M5-90]
Length = 143
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 120
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 121 IANVLDHRTLAD 132
>gi|120434688|ref|YP_860375.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
KT0803]
gi|117576838|emb|CAL65307.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
KT0803]
Length = 137
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L Y A D P + S+I+E+ IS+ FL IL L K+G + + +G+
Sbjct: 2 LSKKTKYGIKALAYIARKKDRKPVQASEISESENISQKFLESILLELRKSGFLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I + V++ E + C + DCP +C + ++ + +A
Sbjct: 62 GGYYLIKEPAEIKMTAVIRVLEGPIAMVPCVSLNYYEKCNDCPDEKTCSVHKLMIQLRDA 121
Query: 118 FFDVLTQYSIECLV 131
+VL + ++E +
Sbjct: 122 SLNVLGENTLEDIA 135
>gi|116872023|ref|YP_848804.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116740901|emb|CAK20021.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 138
Score = 104 bits (259), Expect = 6e-21, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ A
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SKPHCLIGEVMNNAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|190893190|ref|YP_001979732.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
gi|190698469|gb|ACE92554.1| putative transcriptional regulator protein [Rhizobium etli CIAT
652]
Length = 154
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++E V
Sbjct: 122 IAAILDNMTLEQFVA 136
>gi|218780199|ref|YP_002431517.1| BadM/Rrf2 family transcriptional regulator [Desulfatibacillum
alkenivorans AK-01]
gi|218761583|gb|ACL04049.1| transcriptional regulator, BadM/Rrf2 family [Desulfatibacillum
alkenivorans AK-01]
Length = 144
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +YG+R ++Y A + ++A I + FL KI Q L AGIVE ++G
Sbjct: 1 MRLTRAGEYGVRCILYLAGCPRGEVVKKKEVALNMDIPDQFLSKIAQQLAVAGIVEIIQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG+RL R A +++LDVV+A F+ +C + C +C + V KA
Sbjct: 61 SRGGLRLARDAKDVSLLDVVEAITGEIFLNDCVSDP-NSCRNQPTCSVHRVWSKARMQLR 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L + LV ++K
Sbjct: 120 ETLGLATFAGLVEEGHCLQK 139
>gi|21674519|ref|NP_662584.1| hypothetical protein CT1702 [Chlorobium tepidum TLS]
gi|21647711|gb|AAM72926.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 152
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K TDY +R L+ + +D I++ I FL +ILQ L++ G+VE+ G
Sbjct: 1 MKVLNKETDYAVRALISLGMKSDGWVSAKVISDEQAIPYQFLRRILQELIRNGLVESKEG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV+L + I + DV++ + ++EC ++ C +C L + +
Sbjct: 61 AGGGVKLAKEPGDIGVADVIEIFQGKVQLSECMFRKQL-CSNRANCVLRHEIMRIEKMVN 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ +Q +I L+ + +++
Sbjct: 120 NEFSQVTIGKLIDDLKAVEA 139
>gi|255020951|ref|ZP_05293007.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
caldus ATCC 51756]
gi|254969742|gb|EET27248.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
caldus ATCC 51756]
Length = 148
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 2/124 (1%)
Query: 14 LMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H D ++ I++ IS +L ++ L + G+VE+VRG GG RL P Q
Sbjct: 1 MLDLALHQDGGVVTVADISQRQQISVAYLEQLFGRLRRRGLVESVRGPGGGYRLADPTAQ 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIECLV 131
I + +V+A ES +C C G C + L ++ LV
Sbjct: 61 IPLTQIVEAVNESIHTTQCGGDPVQCCKGEGQQCLTHDLWEALGQQIAAFLGGITLAQLV 120
Query: 132 RNRS 135
+
Sbjct: 121 AEQR 124
>gi|306841295|ref|ZP_07474006.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
gi|306288697|gb|EFM60028.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO2]
Length = 166
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA++I I ++++A + + C + DC C + V+ A
Sbjct: 85 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 143
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 144 IANVLDHRTLAD 155
>gi|268592506|ref|ZP_06126727.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri
DSM 1131]
gi|291311912|gb|EFE52365.1| transcriptional regulator, BadM/Rrf2 family [Providencia rettgeri
DSM 1131]
Length = 180
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
H+T +YGI L++ + + ++AE IS FL KIL L KAGIV + G R
Sbjct: 3 HITVSVEYGIHCLLWFVDNPERSLSSRELAELQGISPSFLAKILPRLEKAGIVSSNEGIR 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTSVL 111
GG RL P ++IT L ++ A E + EC + + G+C + V+
Sbjct: 63 GGYRLALPPEKITFLSIIDAIEGYKPLFECQEIRRRCAVFEENGLPQWAISGTCSVHKVI 122
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
+A NA DVL ++ + +
Sbjct: 123 LQAENAMRDVLANQTLADVAQR 144
>gi|29832495|ref|NP_827129.1| hypothetical protein SAV_5952 [Streptomyces avermitilis MA-4680]
gi|29609614|dbj|BAC73664.1| hypothetical protein [Streptomyces avermitilis MA-4680]
Length = 166
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +RVLM A+ D ++A + K++ L G++ RGR
Sbjct: 9 MRLLRSTDLALRVLMRLAVTGDSSPTTREVAADMDVPYTHAAKVVAELQHLGLITARRGR 68
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L ++ VV+A E V +C CPL +C L LR+A AFF
Sbjct: 69 GGGLALMEAGRTASVGAVVRAFEGDGDVVDC--EGSTPCPLNSACRLRGALRRAQEAFFA 126
Query: 121 VLTQYSIECLVR 132
L +++ +V
Sbjct: 127 SLDPLTVQDMVA 138
>gi|154252525|ref|YP_001413349.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154156475|gb|ABS63692.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
lavamentivorans DS-1]
Length = 148
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++ Y ++ ++ A + + + IAE + FL IL L K G+V + RG+
Sbjct: 2 LSQKAKYALKAMIALATQEEGDLLQAADIAERQNVPRKFLELILLDLRKHGLVRSQRGKF 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PAD IT V++ + C + DC SC + +R+ +A
Sbjct: 62 GGYALAKPADAITFGQVIRIMDGPLAPIPCASLTGYRRCADCRDEKSCAVRRTMREVRDA 121
Query: 118 FFDVLTQYSIEC 129
+L +I
Sbjct: 122 AAAILDGTTIAD 133
>gi|294677420|ref|YP_003578035.1| FeS assembly cluster transcription factor IscR [Rhodobacter
capsulatus SB 1003]
gi|294476240|gb|ADE85628.1| FeS assembly cluster transcription factor IscR [Rhodobacter
capsulatus SB 1003]
Length = 152
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ A + +++I++ IS +L ++ L +AG+V +VRG
Sbjct: 1 MKLSTKGRYAMVALVDLATVGPGQMTSLAEISKRQDISLPYLEQLFVRLRRAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-TSVLRKALNAF 118
GG +L + +I I +V +A +E+ A + L +
Sbjct: 61 PGGGYKLAKTPAEIRISEVFEAVDETVSALHVGAGASGGISGSRAQSLANRLWESLSAQV 120
Query: 119 FDVLTQYSIECLVRN 133
F L Q ++E +V+N
Sbjct: 121 FVFLHQTTLEDVVKN 135
>gi|196037505|ref|ZP_03104816.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|196044146|ref|ZP_03111382.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|225862920|ref|YP_002748298.1| hypothetical protein BCA_1009 [Bacillus cereus 03BB102]
gi|229183282|ref|ZP_04310512.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
gi|196024785|gb|EDX63456.1| conserved hypothetical protein [Bacillus cereus 03BB108]
gi|196031747|gb|EDX70343.1| conserved hypothetical protein [Bacillus cereus NVH0597-99]
gi|225789674|gb|ACO29891.1| conserved hypothetical protein [Bacillus cereus 03BB102]
gi|228600421|gb|EEK58011.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
Length = 168
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|118476599|ref|YP_893750.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
str. Al Hakam]
gi|118415824|gb|ABK84243.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
str. Al Hakam]
Length = 170
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G
Sbjct: 3 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 63 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 122
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 123 LVMLEAEEHMREFLRKKTLA 142
>gi|30261095|ref|NP_843472.1| hypothetical protein BA_0967 [Bacillus anthracis str. Ames]
gi|47526250|ref|YP_017599.1| hypothetical protein GBAA_0967 [Bacillus anthracis str. 'Ames
Ancestor']
gi|49183932|ref|YP_027184.1| hypothetical protein BAS0909 [Bacillus anthracis str. Sterne]
gi|165871693|ref|ZP_02216338.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167635503|ref|ZP_02393816.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|167638963|ref|ZP_02397237.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|170687574|ref|ZP_02878790.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|170707938|ref|ZP_02898387.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|177653587|ref|ZP_02935761.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190566555|ref|ZP_03019472.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
gi|227816175|ref|YP_002816184.1| hypothetical protein BAMEG_3602 [Bacillus anthracis str. CDC 684]
gi|229601398|ref|YP_002865526.1| hypothetical protein BAA_1065 [Bacillus anthracis str. A0248]
gi|254682847|ref|ZP_05146708.1| hypothetical protein BantC_03205 [Bacillus anthracis str.
CNEVA-9066]
gi|254725633|ref|ZP_05187415.1| hypothetical protein BantA1_24776 [Bacillus anthracis str. A1055]
gi|254734259|ref|ZP_05191972.1| hypothetical protein BantWNA_03713 [Bacillus anthracis str. Western
North America USA6153]
gi|254740092|ref|ZP_05197784.1| hypothetical protein BantKB_03564 [Bacillus anthracis str. Kruger
B]
gi|254753432|ref|ZP_05205468.1| hypothetical protein BantV_13223 [Bacillus anthracis str. Vollum]
gi|254758530|ref|ZP_05210557.1| hypothetical protein BantA9_09484 [Bacillus anthracis str.
Australia 94]
gi|30254709|gb|AAP24958.1| conserved hypothetical protein [Bacillus anthracis str. Ames]
gi|47501398|gb|AAT30074.1| conserved hypothetical protein [Bacillus anthracis str. 'Ames
Ancestor']
gi|49177859|gb|AAT53235.1| conserved hypothetical protein [Bacillus anthracis str. Sterne]
gi|164712594|gb|EDR18126.1| conserved hypothetical protein [Bacillus anthracis str. A0488]
gi|167513093|gb|EDR88465.1| conserved hypothetical protein [Bacillus anthracis str. A0193]
gi|167529121|gb|EDR91875.1| conserved hypothetical protein [Bacillus anthracis str. A0442]
gi|170127098|gb|EDS95976.1| conserved hypothetical protein [Bacillus anthracis str. A0389]
gi|170668387|gb|EDT19134.1| conserved hypothetical protein [Bacillus anthracis str. A0465]
gi|172081391|gb|EDT66465.1| conserved hypothetical protein [Bacillus anthracis str. A0174]
gi|190562107|gb|EDV16075.1| conserved hypothetical protein [Bacillus anthracis Tsiankovskii-I]
gi|227003551|gb|ACP13294.1| conserved hypothetical protein [Bacillus anthracis str. CDC 684]
gi|229265806|gb|ACQ47443.1| conserved hypothetical protein [Bacillus anthracis str. A0248]
Length = 168
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|119718638|ref|YP_925603.1| BadM/Rrf2 family transcriptional regulator [Nocardioides sp. JS614]
gi|119539299|gb|ABL83916.1| transcriptional regulator, BadM/Rrf2 family [Nocardioides sp.
JS614]
Length = 152
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ ++DY +R L+ A D ++ I FL IL L +AGIV + RG
Sbjct: 1 MRVSAKSDYALRALIEMASRADGRAVSAEELGRLQEIPHGFLQAILADLRRAGIVMSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG R+ R A +++ DV++A + + L V A ++
Sbjct: 61 QSGGWRMGRSAADVSVADVIRAVDGPLVSVYGLRPEAVSYNEAAD-VLQHVWIAARHSLR 119
Query: 120 DVLTQYSIECLVRNR 134
DV Q SI+ L R
Sbjct: 120 DVFEQVSIQQLADGR 134
>gi|65318375|ref|ZP_00391334.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
str. A2012]
Length = 168
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L K GIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKVGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|226303826|ref|YP_002763784.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
gi|229492573|ref|ZP_04386376.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus
erythropolis SK121]
gi|226182941|dbj|BAH31045.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
PR4]
gi|229320559|gb|EEN86377.1| transcriptional regulator, BadM/Rrf2 family [Rhodococcus
erythropolis SK121]
Length = 151
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T + DY +R L+ A P + +A++ I FL +L L + G+V + RG
Sbjct: 1 MHITAKVDYAVRTLVELAAVGPDPAKAEFLAKSQVIPHKFLEAVLSDLRRGGLVNSRRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R AD+ITI DV++A E +D + L V
Sbjct: 61 DGGYWLARSADEITIADVIRAVEGPLASIRGQRPEDVDY-GGPATPLKEVWIAVRVNLRA 119
Query: 121 VLTQYSIECLV 131
VL ++ +
Sbjct: 120 VLENVTLTDVA 130
>gi|307941725|ref|ZP_07657080.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4]
gi|307775333|gb|EFO34539.1| HTH-type transcriptional regulator NsrR [Roseibium sp. TrichSKD4]
Length = 138
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ +D+ +R+L+Y P + ++ +S+ L K++ L + +VET RGR
Sbjct: 1 MRLSQASDFALRILIYLG-QTREPQTVDKLTSRLRLSKSHLMKLVAQLARLDLVETTRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + I I DVV++ E V C +C + C L + A +AF D
Sbjct: 60 GGGILLKANPETIRIGDVVRSFETDLGVVACLKQEPTECVFLPRCALKQTMAGAADAFLD 119
Query: 121 VLTQYSIECLV 131
L Q ++ ++
Sbjct: 120 YLNQKTLADML 130
>gi|229094650|ref|ZP_04225696.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
gi|228688732|gb|EEL42582.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
Length = 168
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KAGIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|167758029|ref|ZP_02430156.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704]
gi|167663926|gb|EDS08056.1| hypothetical protein CLOSCI_00367 [Clostridium scindens ATCC 35704]
Length = 140
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + ++ A+H + I IA +S + ++++ L + G+V ++R
Sbjct: 1 MKISTKGIYALEIITDLAMHTGDGALESIGSIARRRGLSVKYSERLIKELKEQGLVVSIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L R A +IT+ +V++A E EC +C + +
Sbjct: 61 GAHGGYCLGRDAGEITVREVLQAEEGELAPVECLTKETDCGIDCNTCATREIWSQIWQII 120
Query: 119 FDVLTQYSIECLVRNRSSIK 138
D + +I ++ +++
Sbjct: 121 LDTAQEVTIGDIIEKSKNLR 140
>gi|52144351|ref|YP_082476.1| transcriptional regulator [Bacillus cereus E33L]
gi|51977820|gb|AAU19370.1| transcriptional regulator [Bacillus cereus E33L]
Length = 168
Score = 103 bits (258), Expect = 6e-21, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KAGIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|254720792|ref|ZP_05182603.1| RfF2 family protein [Brucella sp. 83/13]
gi|265985850|ref|ZP_06098585.1| transcriptional regulator [Brucella sp. 83/13]
gi|306845400|ref|ZP_07477974.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
gi|264664442|gb|EEZ34703.1| transcriptional regulator [Brucella sp. 83/13]
gi|306274143|gb|EFM55959.1| Transcriptional regulator, Rrf2 family protein [Brucella sp. BO1]
Length = 143
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA++I I ++++A + + C + DC C + V+ A
Sbjct: 62 GGFCLAHPANEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 120
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 121 IANVLDHRTLAD 132
>gi|254410673|ref|ZP_05024452.1| rrf2 family protein (putative transcriptional regulator)
[Microcoleus chthonoplastes PCC 7420]
gi|196182879|gb|EDX77864.1| rrf2 family protein (putative transcriptional regulator)
[Microcoleus chthonoplastes PCC 7420]
Length = 147
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA+ + +L K+L + +A +V +VRG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPGYGPTSVKMIAQRQDLPAPYLEKLLIEMRRANLVNSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R +I++ ++ A E+ + D ++ +
Sbjct: 61 SQGGYQLAREPSKISLGQILAAVGETIEPLHHH---QADATQAEDWVTLTLWHRLHEKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L ++ L + S +
Sbjct: 118 DALYSITLADLYYDARSWQA 137
>gi|329904110|ref|ZP_08273676.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium
IMCC9480]
gi|327548132|gb|EGF32848.1| Iron-sulfur cluster regulator IscR [Oxalobacteraceae bacterium
IMCC9480]
Length = 147
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
++ A+ + P +S I++ IS +L ++ L + IVE+VRG GG L R A+
Sbjct: 3 AMIDLALRQSGGPVTLSGISQRQEISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAE 62
Query: 72 QITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D++ A +E +C C + + + L S++
Sbjct: 63 DVTVADIIIAVDEPLDSTQCGGKENCRKSTAENGTRCMTHDLWSTLNSKMVEYLDSVSLK 122
Query: 129 CLVRNRSS 136
LV +
Sbjct: 123 DLVDQQRQ 130
>gi|218463489|ref|ZP_03503580.1| putative transcriptional regulator protein [Rhizobium etli Kim 5]
gi|218663550|ref|ZP_03519480.1| putative transcriptional regulator protein [Rhizobium etli IE4771]
Length = 154
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++E V
Sbjct: 122 IAAILDNMTLEQFVA 136
>gi|325292198|ref|YP_004278062.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium
sp. H13-3]
gi|325060051|gb|ADY63742.1| transcriptional regulator, BadM/Rrf2 family protein [Agrobacterium
sp. H13-3]
Length = 153
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++++ Y +R L+ A + P +IS IA I + FL +IL + K IVE+ RG++
Sbjct: 9 ISQKAKYALRALLSLAKADGGCPVQISDIAREQAIPKKFLEQILLEMKKERIVESRRGKQ 68
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L RPA IT +V++ + C + DC C + V + +A
Sbjct: 69 GGYLLARPAADITFGEVLRLIDGPLAPLPCLSQTAYRRCEDCDGEKQCEIRHVFARVADA 128
Query: 118 FFDVLTQYSIECLVR 132
++L ++ V
Sbjct: 129 TRNILFNTTVADAVA 143
>gi|302522427|ref|ZP_07274769.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces sp. SPB78]
gi|302431322|gb|EFL03138.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces sp. SPB78]
Length = 151
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A H ++P +A + I FL ++ L +AG+V + RG
Sbjct: 1 MHISAKADYAARALVELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++I++LDVV+A + A ++ P + GL ++ R D
Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGRLAYP-GPAAGLPALWRTLEERARD 119
Query: 121 VLTQYSIECLVRN 133
+L + S+ L R
Sbjct: 120 LLGEVSLASLARE 132
>gi|89890072|ref|ZP_01201583.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium
BBFL7]
gi|89518345|gb|EAS21001.1| transcriptional regulator, Rrf2 family [Flavobacteria bacterium
BBFL7]
Length = 138
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T YGI+ L Y A + N+ P IS IA+A I FL IL L K I+ + +G+
Sbjct: 4 LSRKTKYGIKALTYLARLDNNEPVSISTIADAEQIPHKFLEAILLELRKNSILGSRKGKG 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + + + + + E + C + DC +C + ++ + +
Sbjct: 64 GGYYLMQSPETVRMSSIHRVLEGPIAMLPCVSLNFYEKCEDCIDEETCAVNKLMIQVRDN 123
Query: 118 FFDVLTQYSIECLVR 132
+L +++ L++
Sbjct: 124 TLAILENQTLKDLIK 138
>gi|330807635|ref|YP_004352097.1| transcription factor, Rrf2 family [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327375743|gb|AEA67093.1| putative Transcription factor, Rrf2 family [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
Length = 150
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H P ++ I+E IS +L ++ L ++ +V +VRG GG +L R
Sbjct: 1 MLDLALHAQHGPVSLADISERQGISLSYLEQLFAKLRRSNLVSSVRGPGGGYQLSRDMQG 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + V+ A ES +C DC +C + + L+ S+ LV
Sbjct: 61 IQVAQVIDAVNESVDATKCQGLG--DCHGGDTCLTHHLWCDLSLQIHEFLSGISLADLVT 118
Query: 133 NRS 135
R
Sbjct: 119 RRE 121
>gi|32476776|ref|NP_869770.1| hypothetical protein RB11077 [Rhodopirellula baltica SH 1]
gi|32447322|emb|CAD77148.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
Length = 155
Score = 103 bits (258), Expect = 7e-21, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT +TDY +R LMY A + ++ +A IS + K++ L + G V ++RG
Sbjct: 15 MRLTTQTDYALRTLMYLATR-ESRANVAGVASLFNISVNHVAKVVNVLAREGYVRSIRGV 73
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + +T+ ++ E + C A C + C LT VL A D
Sbjct: 74 GGGIELAVRPEDVTVGQIIATVESDMHLLPCVAGDH-GCVIHSFCKLTGVLANAERIQMD 132
Query: 121 VLTQYSIECLVRNRSSIKK 139
L ++ ++ R + +
Sbjct: 133 YLNSVTLAEVIPTRKQLDR 151
>gi|42780147|ref|NP_977394.1| hypothetical protein BCE_1071 [Bacillus cereus ATCC 10987]
gi|42736065|gb|AAS40002.1| conserved hypothetical protein [Bacillus cereus ATCC 10987]
Length = 168
Score = 103 bits (258), Expect = 8e-21, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 61/140 (43%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KAGIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|302532532|ref|ZP_07284874.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces sp. C]
gi|302441427|gb|EFL13243.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces sp. C]
Length = 152
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R + A +D P + IA+A I FL IL + + G+V + RG
Sbjct: 1 MRISARADYAVRAALQLAASQDDGPLKAEAIADAQEIPHKFLEGILNDMRRGGLVLSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPA I+I DV++ + + + L +
Sbjct: 61 GNGGYRLARPARSISIADVIRVVDGPLVSVRGVRPPDLSYT-GPAESLLPLWIALRANVR 119
Query: 120 DVLTQYSIECLV 131
++L S+ +
Sbjct: 120 EILDGVSLADVA 131
>gi|220922635|ref|YP_002497937.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
nodulans ORS 2060]
gi|219947242|gb|ACL57634.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
nodulans ORS 2060]
Length = 150
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT + YG++ L++ A + ++++A A I + FL IL L AGIV + +G
Sbjct: 2 LTNKGKYGLKALVHLAGLPPGARIGVAEVAAANNIPKKFLDAILGELRNAGIVHSRKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RP ++I + ++ + C + DC +C + V+ + N+
Sbjct: 62 GGYALARPPEEIRVGHAIRVLDGPLAPIPCASRTGYRPCEDCADEAACAVRLVMLEVRNS 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL ++ + ++
Sbjct: 122 IAGVLDTLTLAQMRDRPAA 140
>gi|237785127|ref|YP_002905832.1| Rrf2 family transcriptional regulator [Corynebacterium
kroppenstedtii DSM 44385]
gi|237758039|gb|ACR17289.1| transcriptional regulator, Rrf2 family [Corynebacterium
kroppenstedtii DSM 44385]
Length = 139
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 2/130 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LTK +D G+R LM+ + ++AEA + K++ L + GI++ RGR
Sbjct: 1 MNLTKFSDLGLRALMHMVGSGNARTTAREVAEAINAPRTHVSKVISRLTEFGIIDATRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L A+ ++ +V+ E V +C H CP +C L L +A AFF
Sbjct: 61 GGGITLVDGAEDYSVGAIVRFLEGPSPVIDC--EHPHPCPFNVNCRLQHELAQAQEAFFA 118
Query: 121 VLTQYSIECL 130
L +I+ +
Sbjct: 119 SLDAVAIKDI 128
>gi|254480074|ref|ZP_05093322.1| rrf2 family protein (putative transcriptional regulator) [marine
gamma proteobacterium HTCC2148]
gi|214039636|gb|EEB80295.1| rrf2 family protein (putative transcriptional regulator) [marine
gamma proteobacterium HTCC2148]
Length = 144
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+H P ++ I+ IS +L ++ L + +V +VRG GG RL R +
Sbjct: 1 MLDLALHGSSGPVSLADISGRQDISLSYLEQLFAKLRRNDLVTSVRGPGGGYRLSRHTGE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + +V A E+ C DC C + + L+Q S+ LV
Sbjct: 61 IFVAQIVDAVNEAVDATGC--GGTSDCQQGEVCLTHHLWCDLSDQIHGFLSQISLANLVE 118
Query: 133 NRS 135
+
Sbjct: 119 RKE 121
>gi|193212159|ref|YP_001998112.1| BadM/Rrf2 family transcriptional regulator [Chlorobaculum parvum
NCIB 8327]
gi|193085636|gb|ACF10912.1| transcriptional regulator, BadM/Rrf2 family [Chlorobaculum parvum
NCIB 8327]
Length = 142
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 2/140 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K TDY +R L+ + +D I++ I FL +ILQ L++ G+VE+ G
Sbjct: 1 MKVLNKETDYAVRALISLGMKSDGWVSARAISDEQAIPYQFLRRILQELIRNGLVESKEG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV+L + +I + DV++ + ++EC ++ C +C L + +
Sbjct: 61 AGGGVKLAKEPGEIGVADVIEIFQGKVQLSECMFRKQL-CSNRANCVLRHEIMRIEKMVN 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ ++ +I L+ + +++
Sbjct: 120 NEFSKVTIGKLIDDLKAVEA 139
>gi|307326576|ref|ZP_07605770.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306887770|gb|EFN18762.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 154
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T ++DY +R + A P Q+A I FLF IL+ L A +V +VRG
Sbjct: 1 MRITAKSDYAVRAMAELAAAEGSPLTAEQVATRQDIPLRFLFGILRELRLAHLVRSVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA +IT+ D ++A + ++ P + L V R +
Sbjct: 61 EGGYLLARPAKEITLADAIRAMDGPLANVRDVGLSGLEYPGAAA-VLPDVWRAVRASLRQ 119
Query: 121 VLTQYSIECLVRNR 134
VL + + L
Sbjct: 120 VLEKTTFADLAAGE 133
>gi|224823961|ref|ZP_03697069.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
gi|224603380|gb|EEG09555.1| transcriptional regulator, BadM/Rrf2 family [Lutiella nitroferrum
2002]
Length = 156
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L++ TDYG ++ + A + +++A A ++ KIL+ L + ++ ++RG
Sbjct: 2 LRLSRLTDYGTVIMAHMAREPGHVYSAAELAGAVGVALPTASKILKTLARKALLHSLRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +I+I V+ A E F V EC + + CP +C L ++ A
Sbjct: 62 HGGYLLARPPREISIAQVIDALEGPFGVTECSVAAGL-CPQENACALRRHWQRIDRALRQ 120
Query: 121 VLTQYSIECLVR 132
L ++E + +
Sbjct: 121 TLDGLTLEDMTQ 132
>gi|307325862|ref|ZP_07605062.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306888650|gb|EFN19636.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 149
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK TD +R +M A+ P Q+A + L K+ L G++ET RGR
Sbjct: 1 MRLTKSTDLALRTIMRLAVTGAEPCTARQVAGELQVPYSHLAKVAARLQHLGLIETRRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L ++ +V+ E V +C CPL C L LR+A AF
Sbjct: 61 GGGLALTATGRTASVGQLVREFEGVGDVVDC--EGDTPCPLRQGCRLRMALRRAQEAFLA 118
Query: 121 VLTQYSIECLVRNRS 135
L +++ LV + +
Sbjct: 119 SLDPLTVDDLVASPT 133
>gi|300865571|ref|ZP_07110350.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC
6506]
gi|300336443|emb|CBN55500.1| BadM/Rrf2 family transcriptional regulator [Oscillatoria sp. PCC
6506]
Length = 147
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ + P + IA + +L K+L + ++G+V +VRG
Sbjct: 1 MKLTTRGHYSVKALLDLSSQPGYGPASVKAIASRQELPAPYLEKLLIEMRRSGLVLSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R I++ +++A E+ + + S+ +
Sbjct: 61 TQGGYQLARRPASISLGQILEAVGETIEPLAGHSPDAT---VAEDWVTFSLWNRLHKKIT 117
Query: 120 DVLTQYSIECL 130
+ L S+E L
Sbjct: 118 EALYSISLEDL 128
>gi|320008624|gb|ADW03474.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
flavogriseus ATCC 33331]
Length = 150
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD +RVLM + + P ++A + K++ L G+V+ R
Sbjct: 1 MRLTRFTDVALRVLMRLTVTTDGEDPPTTREVAATMEVPYTHAAKVVARLQHLGLVDARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L +I +V+ E V EC CPL +C L S LR+A AF
Sbjct: 61 GRGGGLTLTTAGRSASIGTLVRELEGPGEVVEC--EGDTPCPLRSACRLRSALRRAEEAF 118
Query: 119 FDVLTQYSIECLVRNRS 135
+ L ++ L + +
Sbjct: 119 YASLDPLTVSDLAASPT 135
>gi|285017824|ref|YP_003375535.1| transcriptional regulator, rrf2 family transcription regulator
protein [Xanthomonas albilineans GPE PC73]
gi|283473042|emb|CBA15547.1| hypothetical transcriptional regulator, rrf2 family transcription
regulator protein [Xanthomonas albilineans]
Length = 152
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLNVLAARPTEVLSATELAEQAGLEPPTVSKLLKPLAQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA+ IT++++V+A E + EC + H C + +CG+ S R + D
Sbjct: 62 HGGYRLARPANAITLIEIVEAMEGPLAITEC-SHHGNQCNITHTCGVRSNWRLINDVIAD 120
Query: 121 VLTQYSIECLVR 132
L ++ ++R
Sbjct: 121 ALGGVTLAQMLR 132
>gi|94967516|ref|YP_589564.1| BadM/Rrf2 family transcriptional regulator [Candidatus Koribacter
versatilis Ellin345]
gi|94549566|gb|ABF39490.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Koribacter
versatilis Ellin345]
Length = 145
Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 69/141 (48%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ LTK+ DYG+ + + A + D +AE + + L K+LQ L KAG++++ +G
Sbjct: 2 LKLTKKADYGLIAMRHLAANADLGACSAKDLAEMYGLPQEALAKLLQRLTKAGLLQSQQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I+ LDV++A E F+ C K C C + LRK +
Sbjct: 62 TNGGYTLARNPRSISALDVIRALEGPLFMTSCTT-AKGSCEQTSKCTVREPLRKVSKSIE 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL + +I + + ++ +
Sbjct: 121 DVLGRLTIAEMCESEEPVRDL 141
>gi|126433552|ref|YP_001069243.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS]
gi|126233352|gb|ABN96752.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS]
Length = 153
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD G+R +M A + IA SE + K + L G+V R
Sbjct: 1 MQLTRFTDLGLRTMMLLAAGEADGQRVTTRTIAAGANASEHHIAKAVARLADLGMVHARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L ++ +V+ E V +C CPLV +C L L A AF
Sbjct: 61 GRVGGLTLTDAGRDASVGWLVRRLEGDREVIQCGGED--PCPLVAACRLRKALSDAKEAF 118
Query: 119 FDVLTQYSIECLV 131
+ L +Y+I L
Sbjct: 119 YRELDRYTIADLA 131
>gi|251796973|ref|YP_003011704.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247544599|gb|ACT01618.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 127
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + + + A D P + Q+A+ +S +L KIL LVKAG++E+ G
Sbjct: 1 MKYSKATNYALHTMAFLIAAAPDRPVGVQQLADKQGVSPTYLSKILTKLVKAGLIESASG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG R + I+ LDV++A E + + EC S +C + V+ A +A
Sbjct: 61 ANGGYRARGKKEDISFLDVIQAIEGTASIFECCHSENPEC------RIHRVMLSAEDAMD 114
Query: 120 DVLTQYSIECLVR 132
L + L++
Sbjct: 115 QHLRNTKLVDLMK 127
>gi|160942312|ref|ZP_02089621.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC
BAA-613]
gi|158434869|gb|EDP12636.1| hypothetical protein CLOBOL_07198 [Clostridium bolteae ATCC
BAA-613]
Length = 179
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y A + + +I +A I+ +F+ K+L+ L AG V +++G
Sbjct: 26 MQLTMTTDYALRCLLYLAG-KEGVSSSPEIGKAVGINNIFVQKVLRVLRDAGFVSSLKGG 84
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + ++I +LD++ E++ + C + C +C + +
Sbjct: 85 TGGYWLAKKPEEIVLLDIILLFEKTMKINRCLEAEG-CCERYETCPMHVYYAEVQETLEG 143
Query: 121 VLTQYSIECLVRNRSSIKK 139
Q +++ ++ + +K
Sbjct: 144 YFGQATLQDVINHGKIKRK 162
>gi|145220261|ref|YP_001130970.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
vibrioformis DSM 265]
gi|145206425|gb|ABP37468.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeovibrioides DSM 265]
Length = 148
Score = 103 bits (257), Expect = 9e-21, Method: Composition-based stats.
Identities = 41/146 (28%), Positives = 71/146 (48%), Gaps = 3/146 (2%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K++DY +R L+ D IAE + FL +LQ L++ G+VE+ G
Sbjct: 1 MKVLNKKSDYAVRALLALGAAGDGFLSARVIAEGQQMPYQFLRGLLQDLIRHGMVESREG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG RL + AD+I +LD+++ + V+EC +I C +C L + + +
Sbjct: 61 ARGGFRLVKDADEIALLDIIEIFQGPVQVSECMFRKQI-CVNRSNCVLRHEILRIEHVVQ 119
Query: 120 DVLTQYSIECLVRN-RSSIKKIFNAG 144
+I L+R+ + + + + G
Sbjct: 120 REFAGITIGKLMRDLEEAHRPVLDGG 145
>gi|254490830|ref|ZP_05104013.1| Transcriptional regulator superfamily [Methylophaga thiooxidans
DMS010]
gi|224464002|gb|EEF80268.1| Transcriptional regulator superfamily [Methylophaga thiooxydans
DMS010]
Length = 129
Score = 103 bits (257), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/129 (28%), Positives = 73/129 (56%), Gaps = 1/129 (0%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MY A++ D+ I+ IA+ ISE L K++ L + ++T+RG+ GG+RL + +I+
Sbjct: 1 MYLALNQDHVVTIANIADTYKISENHLTKVVHYLGQQAYIKTIRGKGGGMRLNKTPTEIS 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ D+ + TE + C + + DC ++ C L ++L ++ A + V +Y++ LV ++
Sbjct: 61 LGDLFRKTEGKAGLLPCV-NGEGDCCIMSVCRLIAILNESQQALYHVFDKYTLADLVVDK 119
Query: 135 SSIKKIFNA 143
S+ +I
Sbjct: 120 FSLSQILTP 128
>gi|113475528|ref|YP_721589.1| BadM/Rrf2 family transcriptional regulator [Trichodesmium
erythraeum IMS101]
gi|110166576|gb|ABG51116.1| transcriptional regulator, BadM/Rrf2 family [Trichodesmium
erythraeum IMS101]
Length = 147
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ ++ P + +IA I +L K+L + + G+V + RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQQSNTPVSVKEIAVRQNIPVAYLEKLLIEMRRGGLVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + QI++ +++++ E+ + + + +
Sbjct: 61 AQGGYQLAKLPAQISLGEILESVGETIEP---LFKYTPNASHAEDWVTYCIWHRIHKKLS 117
Query: 120 DVLTQYSIECL 130
+ L S+E L
Sbjct: 118 EALYNISLEDL 128
>gi|255533630|ref|YP_003094002.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM
2366]
gi|255346614|gb|ACU05940.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM
2366]
Length = 145
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y I+ L+ + + P +I ++AE I FL +IL + AG + + +G
Sbjct: 2 LSKKTKYAIKALVALGKNRENPPMQIVRLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + ++I + D+++ T+ + C + +C +CG+ +A
Sbjct: 62 GGYSLNKEPNEIYLADILRITDGPIAMVPCASLKFYRKCDECHDEVTCGIRKTFIDVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL Q +I ++ +
Sbjct: 122 TLKVLAQTTIADVIARETD 140
>gi|209550687|ref|YP_002282604.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209536443|gb|ACI56378.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 154
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ IA I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDIAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L S+E V
Sbjct: 122 IAAILDNMSLEQFVA 136
>gi|270264632|ref|ZP_06192897.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270041315|gb|EFA14414.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 179
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +YGI L++ N ++AE +S FL KI L KAGIV G RG
Sbjct: 4 ITTSVEYGIHCLLWLVGDNQRALSSRELAELQGVSPSFLAKIFPKLEKAGIVAASEGVRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
G RL RPAD+I+ L+++ A E + +C F + D + G C + +V+ +
Sbjct: 64 GYRLARPADEISFLEIIDAIEGHKPLFDCQEVRGRCAVFDNSPPDWAVSGKCAIHAVMLQ 123
Query: 114 ALNAFFDVLTQYSI 127
A A D L ++
Sbjct: 124 AEKAMRDALAAQTL 137
>gi|194333947|ref|YP_002015807.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
aestuarii DSM 271]
gi|194311765|gb|ACF46160.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
aestuarii DSM 271]
Length = 169
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L T+ TDY +R L+ A H D IAE I FL +LQ + + G++ + G
Sbjct: 2 MQLLTQHTDYALRALLMLADHPDSYLSARHIAEKQEIPYQFLRGLLQEMPREGLICSHEG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV L R I++ +V++ + ++EC ++ C C L + + +
Sbjct: 62 AHGGVGLNRDPGSISVRNVIELFQGKVELSECMFRKQL-CSNRSRCVLRHQIMRIESVVA 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ +I L+ + ++ +
Sbjct: 121 REFDRITIGSLLNDLHAVDR 140
>gi|302548372|ref|ZP_07300714.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302465990|gb|EFL29083.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653]
Length = 149
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 60/131 (45%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK TD +R +M A+ P QIA + L K+ L G++ET RGR
Sbjct: 1 MRLTKSTDLALRAIMRLAVAGAEPCTARQIAGEMRVQYSHLAKVAARLQHLGLIETRRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L ++ +V+ E + V +C CPL C L LR+A AFF
Sbjct: 61 GGGLVLTETGRTASVGQLVRELEGADEVVDC--EGDTPCPLRQGCRLRMALRQAQEAFFS 118
Query: 121 VLTQYSIECLV 131
L ++ L+
Sbjct: 119 SLDPLTVTDLI 129
>gi|256389580|ref|YP_003111144.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Catenulispora acidiphila DSM 44928]
gi|256355806|gb|ACU69303.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
acidiphila DSM 44928]
Length = 151
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + DY +RV++ A H + + + + + F+ IL L +A ++ + RG
Sbjct: 1 MQISAKADYAVRVMLELAAHGPNLVKSTVLIDHQGLPRKFVESILVELRRADLIRSHRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA I+I V++A + H+ + L+ V A A
Sbjct: 61 EGGYTLARPASAISIGQVIRAVDGPLAEVRGLRPHETEYSNAAQ-HLSDVWVAARAALRK 119
Query: 121 VLTQYSIECLVRNR 134
VL + S+ ++ +
Sbjct: 120 VLDETSLAHVLSGK 133
>gi|302878002|ref|YP_003846566.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
gi|302580791|gb|ADL54802.1| transcriptional regulator, BadM/Rrf2 family [Gallionella
capsiferriformans ES-2]
Length = 143
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TD +R L+Y + I+++++A I + L K++ LV AG+V + RGR
Sbjct: 1 MQLNLSTDIALRTLIYLGQKKET-ATIAEVSDAFDIVKTHLMKVVMQLVAAGVVVSERGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG+RL R +I + DVV+ E + + C + CPL+ +C L ++L A AF
Sbjct: 60 NGGIRLARNPAEIVVGDVVRLMENNLALLYCMKTDAPDDCCPLMPNCHLRTILFNAQKAF 119
Query: 119 FDVLTQYSIECLVRN 133
D L ++ L+ +
Sbjct: 120 LDTLDGNTLADLLPD 134
>gi|87198175|ref|YP_495432.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87133856|gb|ABD24598.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
aromaticivorans DSM 12444]
Length = 167
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 46/133 (34%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TD G+R+L+ A + + +S + K+ Q LV G + RGR
Sbjct: 19 MQLTQHTDLGLRLLIVLA-RKGAAVSLPAFSAEQGLSYHHVAKVAQALVHEGFATSQRGR 77
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L R A I + DVV+A E +A+C C L CGL+ VL +AL AF
Sbjct: 78 SGGIALAREATNIRVGDVVRALERGMRLADCGG-----CALRADCGLSGVLAEALEAFMA 132
Query: 121 VLTQYSIECLVRN 133
VL +Y++ + R
Sbjct: 133 VLDRYTLADVSRE 145
>gi|239618077|ref|YP_002941399.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
19.5.1]
gi|239506908|gb|ACR80395.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
19.5.1]
Length = 159
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M T ++ Y +R L A+ + +++IAE I FL KI L AG V+
Sbjct: 1 MGFTVKSSYALRALYELALAAESGNPKLSLAKIAERDMIPRDFLEKIFAELRDAGFVKAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RGR GG L +PA++I + DV+ ++ C +C + +C + V + N+
Sbjct: 61 RGRYGGYVLAKPANEIYLRDVILKLDKPMNSYVCVRE-NTECDIDPNCTVKYVWFRLYNS 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
L + ++ L+ +KK
Sbjct: 120 MMRELGKMTLADLIEIGEKLKK 141
>gi|257453134|ref|ZP_05618433.1| RRF2 family protein [Fusobacterium sp. 3_1_5R]
gi|257467390|ref|ZP_05631701.1| RRF2 family protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 138
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R
Sbjct: 1 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL +IT+ V ++ V +C H+ C CG T + K
Sbjct: 61 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKD-SICGSTCIWSKLDY 119
Query: 117 AFFDVLTQYSIECLVRN 133
A +L+ ++E + N
Sbjct: 120 ALTKILSDTTLEDFINN 136
>gi|251772796|gb|EES53357.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
ferrodiazotrophum]
Length = 157
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 1/143 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ LTK+ DY + L A + + IA I L K++Q L KAG++++
Sbjct: 2 LKLTKKVDYALLALNLMAQAREGETSNVRDIAGIYRIPPEILAKVMQKLSKAGLIQSHNA 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L PA++I++L V+ A E + C DC C + S L + N
Sbjct: 62 PKGGYSLKIPAEKISVLKVLTAVEGPVGIVSCSDGSDKDCQQRDQCDIRSPLERLQNNIL 121
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L SI L + + +K + +
Sbjct: 122 WFLEALSIRELGQEPTVMKGVTD 144
>gi|159026192|emb|CAO88841.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 147
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V + RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L RPA++I++ +++A E+ + ++ +
Sbjct: 61 SQGGYQLARPANRISLGQILEAVGETIEPLSGYHPKD---EQAEDWVTFTIWKHLHEKLK 117
Query: 120 DVLTQYSIECL 130
+ L + ++ L
Sbjct: 118 EALGKITLADL 128
>gi|254282474|ref|ZP_04957442.1| iron-sulfur cluster assembly transcription factor IscR [gamma
proteobacterium NOR51-B]
gi|219678677|gb|EED35026.1| iron-sulfur cluster assembly transcription factor IscR [gamma
proteobacterium NOR51-B]
Length = 150
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 4/128 (3%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A+ N P ++ I+E IS +L ++ L ++G+V++VRG GG L R A +
Sbjct: 1 MLDLALRNGQGPTALAGISERQDISLSYLEQLFSQLRRSGLVKSVRGPGGGYHLGRDAGE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I++ V++A ES C DC +C + + D L S+E LV
Sbjct: 61 ISVAAVIQAVNESTDTTRCRGKG--DCQKGDTCLTHHLWMNLSDQIHDFLEAISLEDLVE 118
Query: 133 NRSSIKKI 140
I++I
Sbjct: 119 T-EEIREI 125
>gi|297153681|gb|ADI03393.1| hypothetical protein SBI_00272 [Streptomyces bingchenggensis BCW-1]
Length = 148
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT+ TD +R +M A + + IA++ + + K + L G+VE RGR
Sbjct: 4 RLTRYTDLALRAVMRLAVMDGEELLTTRLIADSMNVPYTHMAKTIAHLQHLGVVEARRGR 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + ++++ E C + CPL G+C L LR A AF+
Sbjct: 64 NGGLMLTDAGRNTRVGELIRVLEGDREAVVC--EGEAPCPLAGACRLRRALRDAQEAFYA 121
Query: 121 VLTQYSIECLVRNR 134
L Q ++ LV +
Sbjct: 122 SLDQVTVADLVASP 135
>gi|89897247|ref|YP_520734.1| hypothetical protein DSY4501 [Desulfitobacterium hafniense Y51]
gi|219666882|ref|YP_002457317.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfitobacterium hafniense DCB-2]
gi|89336695|dbj|BAE86290.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219537142|gb|ACL18881.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
hafniense DCB-2]
Length = 126
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 61/132 (46%), Gaps = 7/132 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ TDY + +++ A + + + ++AE +S +L KIL LVK G++ + G
Sbjct: 1 MKYSRATDYALHTILFLARNGSEKKLGVQELAEKQNVSPTYLSKILNKLVKEGMIHSSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++I+ D+++A E + +C + +C + V+ A
Sbjct: 61 VNGGYSLGPHWEKISFFDIIQAIEGKTSLFDCCLNSNPECS------IKKVMLAAEKNME 114
Query: 120 DVLTQYSIECLV 131
+ L I LV
Sbjct: 115 EELRTKKISELV 126
>gi|315649593|ref|ZP_07902678.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453]
gi|315275066|gb|EFU38441.1| hypothetical protein PVOR_30583 [Paenibacillus vortex V453]
Length = 133
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K TDY + +++ A P + Q+AE +S +L KIL LVKAG++E++ G
Sbjct: 1 MKYSKATDYALHTMLFLTAATPQKPIGVQQLAERQSVSPTYLSKILTKLVKAGMIESITG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R + I+ LD++ A E S + +C H CP + V+ A
Sbjct: 61 VNGGYRLKRNWEDISFLDIIHAIEGSASLFDCSFDHGPGCP------IQKVVLSAEEKME 114
Query: 120 DVLTQYSIECLVRNRS 135
++L + LVR +
Sbjct: 115 ELLRNQKMSDLVREHN 130
>gi|103486168|ref|YP_615729.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98976245|gb|ABF52396.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
alaskensis RB2256]
Length = 166
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + ++ A P + +AE I K++ L +AG++ RG
Sbjct: 1 MRLSNFADYAVVLMSAAARQCGSVPIHAAMLAEQTGIPGPTAQKLVSQLARAGLLVASRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL RPA I++ D+++A E + C A + DC L GSC + A
Sbjct: 61 SGGGVRLARPAAAISVADIIEAVEGPIALTSCVAEGRHDCSLEGSCKVQPHWGVVNGAVR 120
Query: 120 DVLTQYSIECL 130
L + S+ L
Sbjct: 121 GALAEISLASL 131
>gi|260063768|ref|YP_003196848.1| BadM/Rrf2 family transcriptional regulator [Robiginitalea biformata
HTCC2501]
gi|88783213|gb|EAR14386.1| transcriptional regulator, BadM/Rrf2 family protein [Robiginitalea
biformata HTCC2501]
Length = 135
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YG++ L Y A D P +I++IA IS+ FL IL L K G + + +G+
Sbjct: 2 LSKKTKYGLKALTYLAAQKDREPVQIAEIARHENISQKFLESILLTLRKNGFLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I + V++ E + C + DCP +C + ++ ++
Sbjct: 62 GGYYLIKDPGEIRMTSVMRVLEGPIAMVPCVSLNFYEPCDDCPDESACSVHKLMLMVRDS 121
Query: 118 FFDVLTQYSIECLV 131
V +++ V
Sbjct: 122 ALAVYRNHTLADFV 135
>gi|315918520|ref|ZP_07914760.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563]
gi|317059669|ref|ZP_07924154.1| rrf2 family protein [Fusobacterium sp. 3_1_5R]
gi|313685345|gb|EFS22180.1| rrf2 family protein [Fusobacterium sp. 3_1_5R]
gi|313692395|gb|EFS29230.1| rrf2 family protein [Fusobacterium gonidiaformans ATCC 25563]
Length = 148
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + YG + L Y A++ + RI +IAE+ IS +L +IL L I+E R
Sbjct: 11 MKINTKVRYGFKALAYIAMNTEENKLVRIKEIAESQNISIQYLEQILFKLKNEKIIEGKR 70
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALN 116
G GG RL +IT+ V ++ V +C H+ C CG T + K
Sbjct: 71 GPSGGYRLAMSPKEITLHKVYMILDDEVKVIDCNESDEHRQQCKD-SICGSTCIWSKLDY 129
Query: 117 AFFDVLTQYSIECLVRN 133
A +L+ ++E + N
Sbjct: 130 ALTKILSDTTLEDFINN 146
>gi|166366256|ref|YP_001658529.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa
NIES-843]
gi|166088629|dbj|BAG03337.1| putative HTH-type transcriptional regulator [Microcystis aeruginosa
NIES-843]
Length = 147
Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA I +L K+L + +AG+V + RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPRGTPVSVKSIALRQDIPAAYLEKLLIEMRRAGLVRSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L RPA++I++ +++A E+ + + ++ +
Sbjct: 61 AQGGYQLARPANRISLGQILEAVGETIEP---LSGYHPRDEQAEDWVTFTIWKHLHEKLK 117
Query: 120 DVLTQYSIECL 130
+ L + ++ L
Sbjct: 118 EALGKITLADL 128
>gi|225568454|ref|ZP_03777479.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM
15053]
gi|225162682|gb|EEG75301.1| hypothetical protein CLOHYLEM_04531 [Clostridium hylemonae DSM
15053]
Length = 146
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R L+ A + + ++ IA+ +S +L ++ L KAGIV +V+G
Sbjct: 1 MKISTKGRYGLRALVDMAANSGEEAVSLTLIAKRQNLSLNYLEQVFGILRKAGIVASVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + A IT+ ++++A E F +A D L V +
Sbjct: 61 AGGGYRLAKDAAGITVKEILEALEGEFSIAGTAKGETEDAVGQAIRTL--VWDEIDRRVN 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
++L + ++ L + ++
Sbjct: 119 ELLKEKTLAGLAKEYRIKQE 138
>gi|124516103|gb|EAY57611.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
rubarum]
gi|206602891|gb|EDZ39371.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
Group II '5-way CG']
Length = 156
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ LTK+ DY + L + + + I +++EA I L K+LQ L K GI+++
Sbjct: 2 LKLTKKVDYALLALSFLSQQEEGQVVNIREVSEAYQIPTEILAKVLQRLSKKGILQSHHA 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L +PA ++ILDV+ A + S + C H C + +C + S L +
Sbjct: 62 PKGGYSLKKPARNVSILDVINAIDGSVGILSCSDGHDKTCQQIDNCDIRSPLERIQGKIM 121
Query: 120 DVLTQYSIECLVRNR 134
+L S+E + +
Sbjct: 122 WLLEDMSLEEFIHSE 136
>gi|217976745|ref|YP_002360892.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
silvestris BL2]
gi|217502121|gb|ACK49530.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
silvestris BL2]
Length = 149
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + ++ IA A I + FL IL L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGYLPGEATLVTDIATANQIPKKFLDTILGELRNAGFVNSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I + +V+ + +C + DC CG+ ++ +A NA
Sbjct: 62 GGYTLARPAHEIKVGHIVRVLDGPLAPIQCASATSYRRCDDCTDEKRCGVRLIMLEARNA 121
Query: 118 FFDVLTQYSIECL 130
+VL ++ +
Sbjct: 122 IAEVLDNRTLAEM 134
>gi|37521489|ref|NP_924866.1| hypothetical protein glr1920 [Gloeobacter violaceus PCC 7421]
gi|35212486|dbj|BAC89861.1| glr1920 [Gloeobacter violaceus PCC 7421]
Length = 148
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ L+ R Y ++ ++ IH +D P I QIA IS+ FL ++L L ++G V +VRG
Sbjct: 2 LKLSTRGHYSVKAMLDLTIHRHDPPQPIRQIARRQNISKHFLEQLLILLRQSGFVRSVRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R QIT+ ++++A + + D ++ + +
Sbjct: 62 VQGGYVLARLPAQITLGEILRAVGDGMAP---LGRIERDGTQAEDWVTMALWSRVHRSVE 118
Query: 120 DVLTQYSIECLVRNRSSIKKIFN 142
L + ++E L + S + +
Sbjct: 119 AALDRITLEDLYHDARSRQAALS 141
>gi|317153664|ref|YP_004121712.1| Rrf2 family transcriptional regulator [Desulfovibrio aespoeensis
Aspo-2]
gi|316943915|gb|ADU62966.1| transcriptional regulator, Rrf2 family [Desulfovibrio aespoeensis
Aspo-2]
Length = 145
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R+ Y R+L+ A+H D P R S +A+ I+ F+ +I++PL +AG+V +VRG
Sbjct: 1 MKLSARSRYAARLLLALAMHKGDGPVRTSDLADRTGITAQFIEQIIRPLKQAGMVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R IT+ ++V+ E S +A C C G C + +A A
Sbjct: 61 ASGGHLLDRQPAAITLGEIVRTMEGSANIASCL-DCDTACDRTGDCLTRTAWERASRAME 119
Query: 120 DVLTQYSIECLV 131
L ++ L+
Sbjct: 120 RELDAITLADLM 131
>gi|84498351|ref|ZP_00997148.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649]
gi|84381851|gb|EAP97734.1| hypothetical protein JNB_19728 [Janibacter sp. HTCC2649]
Length = 155
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYC--AIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M ++ RTDY +R ++ A + P + +A+ + FL +I+ L AG+V +
Sbjct: 1 MDISARTDYAVRAMLILGEAQQAESGPVSVETLAQRQSLPRKFLEEIVADLRTAGLVTST 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG RGG L RPA + + DV +A + H+ V L V A
Sbjct: 61 RGARGGYSLARPATETVLGDVFRAVDGPLAEVRGLRPHETAYEGVAL-HLPQVWVAVRAA 119
Query: 118 FFDVLTQYSIECLVRNR--SSIKKI 140
VL S+ ++ +++++
Sbjct: 120 LRAVLDTTSLADVLSGELPDTVREL 144
>gi|126347965|emb|CAJ89685.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
23877]
Length = 172
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 43/136 (31%), Positives = 63/136 (46%), Gaps = 4/136 (2%)
Query: 2 HLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
LTK TD +R +M A D P ++AEA + K + L G+VE RG
Sbjct: 26 RLTKFTDLALRSVMRLAVVRDGDDPLTTREVAEAVGVPYTHAAKAITRLRHLGVVEARRG 85
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L P + ++ +V+ E V C CPL G+C L LR+A AF+
Sbjct: 86 RGGGLTLTDPGRRASVGRLVRELEGDGEVVAC--EGDSPCPLRGACRLRGALREAQEAFY 143
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV + +
Sbjct: 144 AALDPLTVTDLVASPT 159
>gi|282898861|ref|ZP_06306848.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
raciborskii CS-505]
gi|281196388|gb|EFA71298.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
raciborskii CS-505]
Length = 186
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA I +L K+ + AG+V ++RG
Sbjct: 40 MKLTTRGHYSVKALLDLSLQPKYGPASVKAIASRQEIPAAYLEKLFIEMRHAGLVHSLRG 99
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R QI+I ++++A E+ S ++ ++
Sbjct: 100 SIGGYKLARHPQQISIGEILEAVGENITDLAVKVSPST---QAEDWVTFTLWQRLNQKLR 156
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L ++ L + S +
Sbjct: 157 ESLYSITLADLYYDARSRQA 176
>gi|239904872|ref|YP_002951610.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
gi|239794735|dbj|BAH73724.1| putative Rrf2 family DNA binding protein [Desulfovibrio magneticus
RS-1]
Length = 150
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
+IA+ I + FL IL L + G V + RG+ GG L RPA ++T+ V++
Sbjct: 24 GAAPAGEIADRQAIPKRFLEVILNQLRQGGFVASQRGKEGGFYLARPASEVTVGAVIRFM 83
Query: 83 EESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
+ +C DCPL G C + +A +A V S+ LV I++
Sbjct: 84 DGPISPVDCHRERPGHDCPLQGGCVFRGLWDEARDALERVYDTRSLADLVAEDRRIRQ 141
>gi|15964324|ref|NP_384677.1| hypothetical protein SMc02267 [Sinorhizobium meliloti 1021]
gi|307307060|ref|ZP_07586799.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
gi|307320140|ref|ZP_07599560.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|15073501|emb|CAC45143.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306894186|gb|EFN24952.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|306902000|gb|EFN32599.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
Length = 151
Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I++IA+ I + FL IL L AG++ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLPPGQTAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEMCDDCTDPETCRVRISMTSVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++
Sbjct: 122 MSSILDSMTLAEFAA 136
>gi|319786706|ref|YP_004146181.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Pseudoxanthomonas suwonensis 11-1]
gi|317465218|gb|ADV26950.1| transcriptional regulator, BadM/Rrf2 family [Pseudoxanthomonas
suwonensis 11-1]
Length = 154
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 69/130 (53%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +++AE + + + K+L+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSAAELAEQSGLEQPTVSKLLKPLAQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL R AD+IT++++V+A E + EC + C + CG+ S R + D
Sbjct: 62 RGGYRLSRDADRITLIEIVEAMEGPLAMTECSQAGANQCGIAHQCGVRSNWRLINDVVAD 121
Query: 121 VLTQYSIECL 130
L ++ +
Sbjct: 122 ALRGVTLAQM 131
>gi|154502553|ref|ZP_02039613.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149]
gi|153796745|gb|EDN79165.1| hypothetical protein RUMGNA_00366 [Ruminococcus gnavus ATCC 29149]
Length = 142
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R Y + + + A+H D ++ IA+ +SE +L +I++ L +AG+V++VR
Sbjct: 1 MKMSTRGQYALEIAVDLALHLMPDRLESLNDIAKRRNLSEKYLERIMKLLKEAGLVKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L + +I++L+V++A E C + C S +
Sbjct: 61 GAYGGYCLTKEPGEISVLEVLRAAEGQLAPVSCLVENTECGMECEICSTKSTWGEMWEQI 120
Query: 119 FDVLTQYSIECLVR 132
D + ++ +
Sbjct: 121 LDTAAEVTVADIAE 134
>gi|119385683|ref|YP_916738.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119376278|gb|ABL71042.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 152
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ AI D +++I++ IS +L ++ L +AG+V++VRG
Sbjct: 1 MKLSTKGRYAMVALVDLAIAKGDELTSLAEISKRQDISLPYLEQLFVRLRRAGLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL + + I + DV++A +E+ A + L++ +
Sbjct: 61 PGGGYRLAKAPETIRVADVLEAVDETVSALHIGAGASGGISGSRAQTLSNRLWESLSAHV 120
Query: 119 FDVLTQYSIECLVRNR----SSIKKIFN 142
+ L +++ + RN+ ++ KI +
Sbjct: 121 YVFLHNHTLADVARNQLLPCPALPKILS 148
>gi|78358152|ref|YP_389601.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
gi|78220557|gb|ABB39906.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. G20]
Length = 146
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ RT Y R+L+ A+H+ + P R S ++++ ++ F+ +IL+PL K G+V +VRG
Sbjct: 1 MKLSARTRYATRLLLDLALHDDNTPRRASMLSQSTGVTVQFIEQILKPLKKEGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++T+ +V+ E + EC C C V + A
Sbjct: 61 AAGGHLLAADPQELTLGHIVRVMEGGIHMTECSRDE-TACERAHQCRTRQVWIRISRAME 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ L+++ S I
Sbjct: 120 QELEAITLSDLMQDASII 137
>gi|118590662|ref|ZP_01548063.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614]
gi|118436638|gb|EAV43278.1| hypothetical protein SIAM614_05828 [Stappia aggregata IAM 12614]
Length = 143
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ +D+ +R+LM +D P + ++++ +++ + KI+ L K G +ET RGR
Sbjct: 1 MRLSQASDFALRILMA-TGQSDDPQTVDKLSKQLGLAKSHVMKIVAHLAKGGYLETTRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL + I + DVV+ E V C C + C L + +A AF
Sbjct: 60 GGGIRLAKAPATIRLGDVVRLIEPDLGVVACLKPEPTVCAFLPRCALKGAMAQASEAFLA 119
Query: 121 VLTQYSIECLVR 132
L ++ ++
Sbjct: 120 SLNTETLASILA 131
>gi|229815527|ref|ZP_04445856.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM
13280]
gi|229808918|gb|EEP44691.1| hypothetical protein COLINT_02576 [Collinsella intestinalis DSM
13280]
Length = 163
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/154 (18%), Positives = 59/154 (38%), Gaps = 23/154 (14%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN----------------------RISQIAEACCISE 38
M ++ + Y +++++Y A P + ++AE IS
Sbjct: 1 MLISSKGRYALKLMIYIAAIGGDPVGESISADAVSREALAPRPQTKVSLREVAEREGISL 60
Query: 39 LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
+L ++++PL+ AG++ +VRG+ GG L +PA ++ D+++A E C
Sbjct: 61 KYLEQLVRPLMNAGLLRSVRGKGGGYVLAKPAAEVRAGDILRAAEGERSTVAC-EGLDGA 119
Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
C C + ++ L
Sbjct: 120 CGRSDLCSTVKFWTGLEETIDAYVDGVTLAELAH 153
>gi|47096299|ref|ZP_00233896.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
gi|254830378|ref|ZP_05235033.1| hypothetical protein Lmon1_03417 [Listeria monocytogenes 10403S]
gi|254900131|ref|ZP_05260055.1| hypothetical protein LmonJ_09970 [Listeria monocytogenes J0161]
gi|254911315|ref|ZP_05261327.1| Rrf2 family protein [Listeria monocytogenes J2818]
gi|254935642|ref|ZP_05267339.1| Rrf2 family protein [Listeria monocytogenes F6900]
gi|47015344|gb|EAL06280.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
gi|258608223|gb|EEW20831.1| Rrf2 family protein [Listeria monocytogenes F6900]
gi|293589246|gb|EFF97580.1| Rrf2 family protein [Listeria monocytogenes J2818]
Length = 138
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA +E+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|67459239|ref|YP_246863.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
felis URRWXCal2]
gi|67004772|gb|AAY61698.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
felis URRWXCal2]
Length = 139
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A + P +++I+ IS +L +I L KA +V+ +RG
Sbjct: 1 MMLTTKGRYAVMAILEMAAKSSAEPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
+GG L ++I I D++ A E+F + C+ C P C + +
Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWKGLSKHI 120
Query: 119 FDVLTQYSIEC 129
D SI+
Sbjct: 121 RDYFENISIKD 131
>gi|126732149|ref|ZP_01747951.1| CDG1D protein [Sagittula stellata E-37]
gi|126707438|gb|EBA06502.1| CDG1D protein [Sagittula stellata E-37]
Length = 150
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH +K TDY +RV +Y H+ IS+IA A +S+ L K++ LV+ +++ RGR
Sbjct: 1 MHFSKFTDYALRVCLYLGAHDGRVVPISEIARAHSLSQNNLMKVVNMLVEGNFLKSTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV+L R D+I + DV + E + +C + C L GSCGLT L +A F+
Sbjct: 61 AGGVQLARSPDRILVGDVARFMEGDAQMVDCSS-----CILRGSCGLTGALAEAKILFYQ 115
Query: 121 VLTQYSIEC-LVRNRSSIKKIFNA 143
L + SI + + ++ + NA
Sbjct: 116 TLNRNSIADAIASHPRTLPILMNA 139
>gi|86358962|ref|YP_470854.1| hypothetical protein RHE_CH03364 [Rhizobium etli CFN 42]
gi|86283064|gb|ABC92127.1| hypothetical conserved protein [Rhizobium etli CFN 42]
Length = 154
Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++E V
Sbjct: 122 IAAILDNMTLEQFVA 136
>gi|91790106|ref|YP_551058.1| BadM/Rrf2 family transcriptional regulator [Polaromonas sp. JS666]
gi|91699331|gb|ABE46160.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas sp. JS666]
Length = 154
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDYG ++ + A + +++A A ++ KIL+ L +A +++++RG
Sbjct: 2 LRLSKLTDYGTVIMTHMARQPAHVYSAAEVALAVSVTVPTASKILKTLARANLLQSLRGT 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP D+I+I +VV A E V EC A+ + C GSC L + + +
Sbjct: 62 HGGYLLSRPPDEISIAEVVDAMEGPVGVTECSAAVGL-CAQEGSCSLRANWQHVNQVIRN 120
Query: 121 VLTQYSIECLVR 132
VL+ ++ + +
Sbjct: 121 VLSDLTLADMAQ 132
>gi|111019257|ref|YP_702229.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110818787|gb|ABG94071.1| transcriptional regulator [Rhodococcus jostii RHA1]
Length = 158
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 46/136 (33%), Positives = 67/136 (49%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD G+RV+M A+ D IAE +S K++ L + GIV+ RG
Sbjct: 1 MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYAHAAKVITRLSELGIVDARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ + ++ + + E V +C CPL C L S LR+A NAFF
Sbjct: 61 RAGGLAITELGRTASVGWLARRLEGDAEVVDC--DGAQPCPLRSGCLLRSALRRAQNAFF 118
Query: 120 DVLTQYSIECLVRNRS 135
+ L +IE L R+ +
Sbjct: 119 ESLDALTIEDLTRSPT 134
>gi|329934917|ref|ZP_08284958.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces
griseoaurantiacus M045]
gi|329305739|gb|EGG49595.1| Nitrite-sensitive transcriptional repressor NsrR [Streptomyces
griseoaurantiacus M045]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +RVLM A+ D ++A + K++ L G++ RGR
Sbjct: 1 MRLLRSTDLALRVLMRLAVAGDSSPTTREVAADMDVPYTHAAKVVAELQHRGLLAARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKAT---EESFFVAECFAS--HKIDCPLVGSCGLTSVLRKAL 115
GG+ + ++ VV+A + V +C CPL C L LR+A
Sbjct: 61 GGGLSVTEAGRTASVGRVVRAFEGADGGSDVVDCEGGGTGTPPCPLRSDCLLRGALRRAQ 120
Query: 116 NAFFDVLTQYSIECLV 131
AF+ L +++ ++
Sbjct: 121 EAFYASLDPLTVQDMI 136
>gi|153852854|ref|ZP_01994291.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814]
gi|149754496|gb|EDM64427.1| hypothetical protein DORLON_00273 [Dorea longicatena DSM 13814]
Length = 148
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 68/137 (49%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L+ AI++ ++ IAE IS +L ++ L KAGIV++++G
Sbjct: 1 MKLSMKSRYGLRALIDLAINSKTEQVALNSIAERNKISPQYLEQVFASLRKAGIVKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RP +IT+ +++A E + + + + V+ + ++
Sbjct: 61 SQGGYFLSRPPQEITVSSIIEALEGDYRIEDEELPKEGKYTGSVKAIQKLVIDRVNDSVT 120
Query: 120 DVLTQYSIECLVRNRSS 136
++L ++ L +
Sbjct: 121 EILQSVTLHDLEKEYQE 137
>gi|289433915|ref|YP_003463787.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170159|emb|CBH26699.1| Rrf2 family transcriptional regulator protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 138
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G
Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +PA I+ LDV++A E C + + C + V+ A
Sbjct: 61 VNGGYKLAKPASNISFLDVIQAIEGKTAFFHCDPKNHAE--TKPHCLIGEVMGNAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ +I +V
Sbjct: 119 DYLSKQTIGSIV 130
>gi|119356346|ref|YP_910990.1| BadM/Rrf2 family transcriptional regulator [Chlorobium
phaeobacteroides DSM 266]
gi|119353695|gb|ABL64566.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides DSM 266]
Length = 164
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 2/139 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY IR L++ IA I FL +++Q ++ G+V + G
Sbjct: 1 MKVLTKNTDYAIRALLFLGARKGSYVSAKTIAAEQEIPYQFLRRLMQDMIGHGLVVSKGG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + D I I D+++ + V+EC K+ C +C L + +
Sbjct: 61 ASGGFMLLKEPDGIRINDLIEIFQGKIQVSECMFRKKL-CSNRATCVLRHEIMRIEQVVH 119
Query: 120 DVLTQYSIECLVRNRSSIK 138
+ +I L+R+ +
Sbjct: 120 QEFEKVTIGKLMRDLDEAR 138
>gi|222099072|ref|YP_002533640.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
DSM 4359]
gi|221571462|gb|ACM22274.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
DSM 4359]
Length = 138
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC--ISELFLFKILQPLVKAGIVETVRGR 60
T R++Y +R+++ A D +++I E + F KIL L K+GIVET RG+
Sbjct: 2 FTMRSEYALRLMIVMAKEYDRYLSMTEILEKAKNSVPREFAEKILYTLRKSGIVETKRGK 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RP +I + D++ + V CP C + S+ ++
Sbjct: 62 TGGYRLARPPKEIRVSDIIFLLDRKARVF----FDMPGCPDELDCVIRSLWKRVEEEIEK 117
Query: 121 VLTQYSIECLVRNRSSIKK 139
VL ++E LV+ + K
Sbjct: 118 VLGSVTLEDLVKEQEEKLK 136
>gi|153938123|ref|YP_001392722.1| putative transcriptional regulator [Clostridium botulinum F str.
Langeland]
gi|152934019|gb|ABS39517.1| putative transcriptional regulator [Clostridium botulinum F str.
Langeland]
gi|295320703|gb|ADG01081.1| putative transcriptional regulator [Clostridium botulinum F str.
230613]
Length = 133
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + I+ LD++ A E + +C +C + V+ A
Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSEC------VIKKVMLSAEKKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L+ I LV+
Sbjct: 115 EELSNQKISDLVKK 128
>gi|119493246|ref|ZP_01624086.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp.
PCC 8106]
gi|119452719|gb|EAW33897.1| Transcriptional Regulator, BadM/Rrf2 family protein [Lyngbya sp.
PCC 8106]
Length = 147
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ + P ++ IA + +L K+L + +AG+VE+VRG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQQEFGPTSVNAIAHRQKLPAPYLEKLLIEMRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R +I++ +++A ES H+ + L ++ +
Sbjct: 61 SQGGYQLSRSPAKISLGQILEAVGESIEP---LPRHQPNAELAEDWVTFTLWNRLHQKLK 117
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L S+E L + S +
Sbjct: 118 EALYSISLEDLYYDARSWQA 137
>gi|325919608|ref|ZP_08181620.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri
ATCC 19865]
gi|325549944|gb|EGD20786.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas gardneri
ATCC 19865]
Length = 152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARGDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A +IT++++V+A E + EC H C + +CG+ S R + D
Sbjct: 62 HGGYRLARAASEITLVEIVEAMEGPLAITECSQDHSQ-CGIAQTCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|78063784|ref|YP_373692.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
gi|77971669|gb|ABB13048.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
Length = 173
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 11/140 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ +YG+ L+Y A + + +AE +S + K+ L KAGIV + G
Sbjct: 4 ISTGVEYGLHCLLYLADTSTGVRDASVRDLAEMQGVSVDYAAKLFTRLAKAGIVVSSEGI 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111
RGG L RPA I++ DVV+A + + +C F G+C + +V+
Sbjct: 64 RGGFALARPARDISVQDVVEAIDGDKRLFDCREVRGQCAVFEGEPPAWATRGTCSIHAVM 123
Query: 112 RKALNAFFDVLTQYSIECLV 131
+ A A + L + S+ L
Sbjct: 124 QAAERAMREELKKQSLADLA 143
>gi|289706858|ref|ZP_06503199.1| Rrf2 family protein (putative transcriptional regulator)
[Micrococcus luteus SK58]
gi|289556408|gb|EFD49758.1| Rrf2 family protein (putative transcriptional regulator)
[Micrococcus luteus SK58]
Length = 152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 55/132 (41%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TD +RVLM A QIA+ + + K + L + G +E +RGR
Sbjct: 1 MKLSAYTDVCLRVLMTLAAAEGERLTSQQIADRIQVPYNHVIKAVAELRRRGTIEVLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + ++V++ V +C + CP G C L L +A AF
Sbjct: 61 HGGAMIAAAGLDQRVGELVRSLSSRDEVIDCAGRDSGVACPYAGDCRLRGALHRAREAFL 120
Query: 120 DVLTQYSIECLV 131
L I LV
Sbjct: 121 AELDTVRIRDLV 132
>gi|16126861|ref|NP_421425.1| RrF2 family protein [Caulobacter crescentus CB15]
gi|221235644|ref|YP_002518081.1| Rrf2 family protein [Caulobacter crescentus NA1000]
gi|13424201|gb|AAK24593.1| RrF2 family protein [Caulobacter crescentus CB15]
gi|220964817|gb|ACL96173.1| Rrf2 family protein [Caulobacter crescentus NA1000]
Length = 143
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+++ Y +R ++ A D ++AE FL IL L + G+V + RG+ G
Sbjct: 2 LSQKARYALRAMIELA-RADTQVTAGELAERADAPRKFLEAILLSLSREGLVISRRGKFG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G L R AD I+ ++++ + + C + DC + +C L L +A +A
Sbjct: 61 GYVLARDADAISFAEIIRLVDGPLALTPCVSRTAFRRCEDCRDLATCALREALLRARDAT 120
Query: 119 FDVLTQYSIEC 129
VL YS+
Sbjct: 121 AAVLEGYSLAD 131
>gi|58617151|ref|YP_196350.1| cysteine desulfurase [Ehrlichia ruminantium str. Gardel]
gi|58416763|emb|CAI27876.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia
ruminantium str. Gardel]
Length = 526
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++
Sbjct: 5 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+G GG L IT+ ++++ E+ + C + C +
Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNGPGCLSNNNRCVTHKLWDDI 124
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N D L S+E +V N
Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144
>gi|239932920|ref|ZP_04689873.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
Length = 152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R + A D P + I++A I FL IL + + G+V + RG
Sbjct: 1 MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PA+ ITI DV++ + ++ + L + +
Sbjct: 61 GNGGYRLAKPAESITIADVIRTVDGPLVSVRGVRPPELSYT-GPAESLLPLWIALRSNVR 119
Query: 120 DVLTQYSIECLV 131
++L S+ +
Sbjct: 120 EILEGVSLADVA 131
>gi|312115350|ref|YP_004012946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhodomicrobium vannielii ATCC 17100]
gi|311220479|gb|ADP71847.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
vannielii ATCC 17100]
Length = 152
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 6/143 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT + YG++ + + A + ++S+IAEA I + FL +I L KAG V + +G+
Sbjct: 2 LTAKGKYGLKAMTHLARLAPGEIAQVSEIAEANSIPKKFLDQIFSELRKAGFVFSKKGKA 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + A I + D+V+ + C + DC G C + +++ + NA
Sbjct: 62 GGYALAKEASSINVGDIVRVLDGPLAPIPCASVTAYRACDDC-DCGECEVRAIMVEVRNA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
VL ++ +S+ +++
Sbjct: 121 ISVVLDNRTLAQFAGLKSTRRRV 143
>gi|229016279|ref|ZP_04173227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
gi|229022516|ref|ZP_04179048.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228738769|gb|EEL89233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228745050|gb|EEL95104.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
Length = 168
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDDACNSCDPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|229028761|ref|ZP_04184868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
gi|228732543|gb|EEL83418.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
Length = 168
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDDACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|15919268|gb|AAL10759.1|AF338108_1 hypothetical iron-sulfur cofactor synthesis protein 1 [Ehrlichia
ruminantium]
Length = 522
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++
Sbjct: 1 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+G GG L IT+ ++++ E+ + C + C +
Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N D L S+E +V N
Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140
>gi|57239143|ref|YP_180279.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden]
gi|57161222|emb|CAH58138.1| hypothetical protein Erum4140 [Ehrlichia ruminantium str.
Welgevonden]
Length = 522
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++
Sbjct: 1 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+G GG L IT+ ++++ E+ + C + C +
Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N D L S+E +V N
Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140
>gi|313639464|gb|EFS04318.1| putative transcriptional regulator [Listeria seeligeri FSL S4-171]
Length = 138
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G
Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +PA I+ LDV++A E C + + C + V+ A
Sbjct: 61 VNGGYKLAKPATNISFLDVIQAIEGKTAFFHCDPKNHAE--TKPHCLIGEVMGNAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L+ +I +V
Sbjct: 119 DYLSNQTIGSIV 130
>gi|23097775|ref|NP_691241.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
gi|22775999|dbj|BAC12276.1| transcriptional regulator [Oceanobacillus iheyensis HTE831]
Length = 141
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A I + ++AE +S +L KIL LVK+G++E+ G
Sbjct: 1 MKFSKATNYALHTMVYLADIPKGTSIGVDRLAETQKLSPTYLSKILTKLVKSGLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL R AD IT LDV++A E + C H D C + + + +A
Sbjct: 61 AKGGYRLARKADNITFLDVIRAIEGQTVLFYCSIDHDDDFSRNEECLIENAMIEAEEKMK 120
Query: 120 DVLTQYSIECLVR 132
+ L + I + +
Sbjct: 121 ESLDRKYIVDIAK 133
>gi|108805410|ref|YP_645347.1| BadM/Rrf2 family transcriptional regulator [Rubrobacter
xylanophilus DSM 9941]
gi|108766653|gb|ABG05535.1| transcriptional regulator, BadM/Rrf2 family [Rubrobacter
xylanophilus DSM 9941]
Length = 156
Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 4/135 (2%)
Query: 1 MHL--TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L + Y +R L+Y A + I+ I L ++L L +A +V +
Sbjct: 15 MRLELSSEGRYALRALIYLA-RVNRRVTADTISADTGIPRRLLARVLAKLSRARLVRSSE 73
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG L R +QIT+ + V+A E F V C + C C + + A
Sbjct: 74 GRGGGSELARSPEQITLREAVEAIEGPFEVTRCIMEERA-CGTGAPCAMHEAWEEGQEAI 132
Query: 119 FDVLTQYSIECLVRN 133
D L ++ V
Sbjct: 133 LDYLQGQTLSEFVSQ 147
>gi|282896000|ref|ZP_06304031.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
D9]
gi|281199110|gb|EFA73980.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
D9]
Length = 147
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA I +L K+L + AG+V ++RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPKYGPGSVKAIASRQEIPAAYLEKLLIEMRHAGLVHSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L + QI+I ++++A E+ S ++ ++
Sbjct: 61 SVGGYKLAKHPQQISIGEILEAVGENIADLAVKVSPST---QAEDWVTFTLWQRLNQKLR 117
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L ++ L + S +
Sbjct: 118 EALYSITLADLYYDARSRQA 137
>gi|58579094|ref|YP_197306.1| cysteine desulfurase [Ehrlichia ruminantium str. Welgevonden]
gi|58417720|emb|CAI26924.1| Cysteine desulfurase (NifS protein homolog) duplication [Ehrlichia
ruminantium str. Welgevonden]
Length = 526
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M +T R Y I ++ A + P R+S IA +SE +L +++ L K G++
Sbjct: 5 MLITARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+G GG L IT+ ++++ E+ + C + C +
Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 124
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N D L S+E +V N
Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144
>gi|290960745|ref|YP_003491927.1| transcriptional regulator [Streptomyces scabiei 87.22]
gi|260650271|emb|CBG73387.1| putative transcriptional regulator [Streptomyces scabiei 87.22]
Length = 152
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R ++ A + P + IA I FL IL L + G+V + RG
Sbjct: 1 MRISARADYAVRAVLEVAVRQDGGPVKAEVIATVQEIPHKFLEGILGDLRRGGLVTSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R IT+ DV++A + + L +
Sbjct: 61 GSGGYRLAREPAAITVADVIRAVDGPIVSVRGERPTGLTYTGSAE-PLLPLWIALRANVR 119
Query: 120 DVLTQYSIECLVR 132
+L ++ +
Sbjct: 120 RILEGVTVADIAA 132
>gi|302551156|ref|ZP_07303498.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces viridochromogenes DSM 40736]
gi|302468774|gb|EFL31867.1| iron-sulfur cluster assembly transcription factor IscR
[Streptomyces viridochromogenes DSM 40736]
Length = 152
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R ++ A + P + +A A I FL IL L + G+V++ RG
Sbjct: 1 MRISARADYAVRAVVELAARQGEGPVKAEAVATAQDIPHKFLEGILGDLRRGGVVDSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R A +IT+ DV++A + + L +
Sbjct: 61 GGGGYRLAREATEITVADVIRAVDGPIVSVRGERPTGLAYTGTAE-PLLPLWIALRANVR 119
Query: 120 DVLTQYSIECLVR 132
+L ++ L
Sbjct: 120 RILEGVTVADLAA 132
>gi|228932374|ref|ZP_04095256.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228827310|gb|EEM73062.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 168
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|228968749|ref|ZP_04129715.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790927|gb|EEM38562.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 168
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGVLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|228984158|ref|ZP_04144343.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228775595|gb|EEM23976.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 168
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + I +AE +SE FL K+ L KA IV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLINTPSKESVGIKDLAEFQGLSETFLSKVFGKLSKADIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLT 108
+GG RL + + I+ DV++A E + +C C P SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDEACNSCEPSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ +A + L + ++
Sbjct: 121 LVMLEAEEHMREFLRKKTLA 140
>gi|225874112|ref|YP_002755571.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
gi|225793907|gb|ACO33997.1| Rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
Length = 151
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ LTK+ DYG+ + Y A H P+ IAEA I L KILQ L + G++ + G
Sbjct: 2 LRLTKKADYGLMAVKYLAEHAGEPSRSAKDIAEAYHIPAQLLAKILQKLTREGLLRSHAG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I+ +V++A + F+ C + C L SC + L + +
Sbjct: 62 MNGGYSLTRAAKDISAFEVIRAIDGPLFITSCTTGTSV-CDLTASCTIKEPLARVNESII 120
Query: 120 DVLTQYSIECLVRNR 134
D+L + I L+ +
Sbjct: 121 DLLRKTRISDLMDHE 135
>gi|315650361|ref|ZP_07903433.1| transcription regulator [Eubacterium saburreum DSM 3986]
gi|315487472|gb|EFU77782.1| transcription regulator [Eubacterium saburreum DSM 3986]
Length = 139
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + V++ + +D + IA+ ISE +L I++ LVK ++ +RG
Sbjct: 1 MKISTKGRYSLLVMIDLTENQSDDFIPLRDIAKRQDISEKYLESIIKLLVKNKLLVGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + IT+ +V++ EE+ + + K
Sbjct: 61 KGGGYKLTKRPSDITVGEVLRIAEENIMI---DEEDTESMYRTSEYRTIDMWSKLSKMIN 117
Query: 120 DVLTQYSIECLV 131
D SI L+
Sbjct: 118 DYFDSISIADLI 129
>gi|302039295|ref|YP_003799617.1| putative transcription factor IscR [Candidatus Nitrospira defluvii]
gi|300607359|emb|CBK43692.1| putative Transcription factor IscR [Candidatus Nitrospira defluvii]
Length = 159
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 36/138 (26%), Positives = 66/138 (47%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN------DYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+ L+K+ DYG+ L + A + +IAE I L K+LQ L K+GI+
Sbjct: 2 LKLSKKADYGLMALQHIASNQYGDVAQARVVNTKEIAEEYHIPVELLAKVLQTLSKSGII 61
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRK 113
E+ G +GG L + +ITI V+++ E + +C D C C + + L K
Sbjct: 62 ESHNGPKGGYLLGKNPREITIAHVLESLEGPLGIMDCSHEKDGDACMQREHCNIRTPLLK 121
Query: 114 ALNAFFDVLTQYSIECLV 131
++ + +L +++ ++
Sbjct: 122 IQSSIYQLLNNMTLQDMM 139
>gi|91205764|ref|YP_538119.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
bellii RML369-C]
gi|91069308|gb|ABE05030.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
bellii RML369-C]
Length = 139
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A + D P +++I+ IS +L +I L KA +V+ +RG
Sbjct: 1 MMLTTKGRYAVMAILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L ++I I +++ A E+F + C+ +C C + +
Sbjct: 61 PNGGYILIGKLEEIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKCNSHKLWKGLGKHI 120
Query: 119 FDVLTQYSIEC 129
D S++
Sbjct: 121 RDYFENISVKD 131
>gi|254491784|ref|ZP_05104963.1| rrf2 family protein (putative transcriptional regulator)
[Methylophaga thiooxidans DMS010]
gi|224463262|gb|EEF79532.1| rrf2 family protein (putative transcriptional regulator)
[Methylophaga thiooxydans DMS010]
Length = 135
Score = 101 bits (253), Expect = 2e-20, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ +++ ++ I+E IS +L ++ L K G+V + RG GG RL R A+
Sbjct: 1 MLDLSLNYGLGAITLADISERQGISLSYLEQLFARLRKQGLVSSSRGPGGGYRLSRSAED 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
IT+LDV+ A +E +C + +C C + + + L ++ +V
Sbjct: 61 ITVLDVISAVDEKVDSTQC--EGRKNCHGDEKCLSHELWQSLSDQIRVYLDGITLAEVVS 118
Query: 133 NRS 135
+
Sbjct: 119 SYE 121
>gi|168181991|ref|ZP_02616655.1| oligopeptide transport system permease protein OppB [Clostridium
botulinum Bf]
gi|237796821|ref|YP_002864373.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657]
gi|182674817|gb|EDT86778.1| oligopeptide transport system permease protein OppB [Clostridium
botulinum Bf]
gi|229263736|gb|ACQ54769.1| RRF2 family protein [Clostridium botulinum Ba4 str. 657]
Length = 133
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + I+ LD++ A E + +C +C + V+ A
Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSEC------VIKKVMLSAEKKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I LV+
Sbjct: 115 EELRNQKISDLVKK 128
>gi|117164556|emb|CAJ88102.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
23877]
Length = 152
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R + A +D P + IA+A I FL IL + + G+V + RG
Sbjct: 1 MRISARADYAVRAALQLAASRDDGPLKAEAIADAQDIPHKFLEGILNDMRRGGLVLSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PA+ I+I DV++ E ++ + L + +
Sbjct: 61 GNGGYRLAKPAESISIADVIRTVEGPLVSVRGVRPPELSYT-GPAESLLPLWIALRSNVR 119
Query: 120 DVLTQYSIECLV 131
++L S+ +
Sbjct: 120 EILEGVSLADVA 131
>gi|310819041|ref|YP_003951399.1| Rrf2 family transcriptional regulator [Stigmatella aurantiaca
DW4/3-1]
gi|309392113|gb|ADO69572.1| Transcriptional regulator, Rrf2 family [Stigmatella aurantiaca
DW4/3-1]
Length = 152
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
TDYG+ +L A ++AE + + K+L+ L AG++ + RG GG
Sbjct: 1 MTDYGLVLLTELAREEGGTCTARELAERTRVPLPSVSKVLKGLQSAGVLVSHRGAMGGYG 60
Query: 66 LCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
L RPA I + V+ A E + C + C L C + R A + L
Sbjct: 61 LARPAAAIPLTQVISALEGPVAITACVQHTDGEPSCELESVCRIRGHWRVINQAIQEALG 120
Query: 124 QYSIECLVRNRSSIKKIFN 142
+ ++ L ++++
Sbjct: 121 RLTLADLCAPELRVERLVG 139
>gi|308070540|ref|YP_003872145.1| transcriptional regulator [Paenibacillus polymyxa E681]
gi|305859819|gb|ADM71607.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
Length = 132
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/138 (31%), Positives = 70/138 (50%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M TK T+Y + ++ A + P + Q+AE+ +S +L KIL LVKAG++E+V G
Sbjct: 1 MKFTKATNYALHTMLMLVADSSVKPVGVQQLAESQNVSPTYLSKILTRLVKAGMIESVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R D IT LD++ A E + + EC D C + +V+R+A
Sbjct: 61 ANGGYRLSRHKDDITFLDIIHAIEGTNSLFEC------DFVHGSECLIQAVMREAEEKME 114
Query: 120 DVLTQYSIECLVRNRSSI 137
L + L + ++ +
Sbjct: 115 RHLKNTKLVDLAQKQTQV 132
>gi|294083583|ref|YP_003550340.1| BadM/Rrf2 family transcriptional regulator [Candidatus
Puniceispirillum marinum IMCC1322]
gi|292663155|gb|ADE38256.1| transcriptional regulator, BadM/Rrf2 family [Candidatus
Puniceispirillum marinum IMCC1322]
Length = 164
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 60/131 (45%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L + TDY I VL A D + +AE + + + K+ + LV A ++ T RG
Sbjct: 3 RLNRMTDYAIVVLGALAHKRDETVATALLAELTGLKQPTVAKVAKNLVAADLLVTQRGVN 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG RL RPA I+++D+V+A E V +C C + C + + + A
Sbjct: 63 GGYRLVRPARSISLVDIVEAMEGPIAVTDCVDGAPDPCAVTHCCFMANNWNRVNLAIRGA 122
Query: 122 LTQYSIECLVR 132
L ++E L
Sbjct: 123 LEAVTLEDLTD 133
>gi|291441270|ref|ZP_06580660.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
gi|291344165|gb|EFE71121.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
Length = 154
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R + A D P + I++A I FL IL + + G+V + RG
Sbjct: 3 MRISARADYAVRAALQLAASRQDGPLKAEAISDAQDIPHKFLESILNDMRRGGLVHSRRG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL +PA+ ITI DV++ + ++ + L + +
Sbjct: 63 GNGGYRLAKPAESITIADVIRTVDGPLVSVRGVRPPELSYT-GPAESLLPLWIALRSNVR 121
Query: 120 DVLTQYSIECLV 131
++L S+ +
Sbjct: 122 EILEGVSLADVA 133
>gi|333023880|ref|ZP_08451944.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
gi|332743732|gb|EGJ74173.1| putative transcriptional regulator [Streptomyces sp. Tu6071]
Length = 151
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L A H ++P +A + I FL ++ L +AG+V + RG
Sbjct: 1 MHISAKADYAARALAELASHPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++I++LDVV+A + A + P + GL ++ R D
Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGDAPGHLAYP-GPAAGLPALWRTLEERARD 119
Query: 121 VLTQYSIECLVRN 133
+L + S+ L R
Sbjct: 120 LLGEVSLAALARE 132
>gi|282899141|ref|ZP_06307122.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
raciborskii CS-505]
gi|281196057|gb|EFA70973.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
raciborskii CS-505]
Length = 149
Score = 101 bits (253), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 3/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y I L+ A H N P +I QIA I + +L ++L L + GI+++ R
Sbjct: 1 MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
G +GG L R +IT+LD+++ E +AE + K S + + ++A A
Sbjct: 61 GSKGGYLLAREPRKITLLDILECLEGLDIKIAEDNTNPKTAPKTADSGIIDEIWKEARQA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
VL +YS+E L R+ +++
Sbjct: 121 ANLVLEKYSLEDLCEKRTLRRQL 143
>gi|332971653|gb|EGK10602.1| iron-sulfur cluster assembly transcription regulator IscR
[Psychrobacter sp. 1501(2011)]
Length = 175
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 10/149 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT R Y + L+ AI + +S IA+ IS +L ++ L KAG+V +
Sbjct: 1 MRLTTRGRYAVTALLDLAIQDGDSSSAVSLSDIAKRQSISISYLEQLFSKLRKAGLVTST 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L +P ++I ++ ++ A +ES + +C C +
Sbjct: 61 RGASGGYHLAKPLNEIDVMTIITAVDESVNAM--QCGGQGNCQGGAMCLTHDLWCALSMH 118
Query: 118 FFDVLTQYSIECL-----VRNRSSIKKIF 141
L S++ L V++ S +++
Sbjct: 119 IEQYLKNISLDQLLEMENVKDVSHRQQLL 147
>gi|206889263|ref|YP_002249119.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
gi|206741201|gb|ACI20258.1| Rrf2 family protein [Thermodesulfovibrio yellowstonii DSM 11347]
Length = 164
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 44/136 (32%), Positives = 72/136 (52%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +T+ TDY IR ++Y + DY R +I++ I + FL KIL+ L K G+V+ RG
Sbjct: 30 LQITRETDYAIRTVLYLSGKKDYSARAEEISQQMQIPKSFLRKILKQLEKVGLVQLKRGV 89
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L R +IT+ DV+ A E++ + C + KI C L+ C + V K
Sbjct: 90 SGGIKLLREPVEITLFDVIVAMEKAVALNRCVINDKI-CGLISHCPVHPVWFKVRERLIQ 148
Query: 121 VLTQYSIECLVRNRSS 136
L + + L + +S
Sbjct: 149 ALQEIKFQELAKGAAS 164
>gi|189183482|ref|YP_001937267.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda]
gi|189180253|dbj|BAG40033.1| Rrf2 family protein [Orientia tsutsugamushi str. Ikeda]
Length = 148
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT ++ Y + ++ A + P ++ +IA+ I+ +L ++ L GIV++V+G
Sbjct: 1 MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L + TI D++ A EE + C ++ C L C + +
Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRC--NNSKGCLALNVRCTAHYLWEELEYKI 118
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
++ S++ ++ + + +
Sbjct: 119 KHYFSEISLDDIISGKVKSQAL 140
>gi|21673360|ref|NP_661425.1| hypothetical protein CT0525 [Chlorobium tepidum TLS]
gi|21646455|gb|AAM71767.1| conserved hypothetical protein [Chlorobium tepidum TLS]
Length = 136
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A+ + + ++A S++FL K +Q L KAGI +V+G
Sbjct: 2 LQVSRKFEYGLHAVTYLAMKGPEQVVTVKELAAEIGFSQVFLAKAMQSLNKAGITRSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L RPA+QIT+ D+ A E + C + C + +C + +
Sbjct: 62 VKGGYTLARPAEQITVADIGVAIEGEPHLMRCSQENCQ-CEIESNCTHKGYMLNLQKRIY 120
Query: 120 DVLTQYSIECLVRNR 134
D+L + ++ L+
Sbjct: 121 DLLAETTVAVLLERY 135
>gi|116695452|ref|YP_841028.1| iron sulfur cluster assembly transcriptional regulator (SufA)
[Ralstonia eutropha H16]
gi|113529951|emb|CAJ96298.1| iron sulfur cluster assembly transcriptional regulator (SufA)
[Ralstonia eutropha H16]
Length = 156
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDYG ++ + A + +++A A ++ KIL+ L + ++E++RG
Sbjct: 2 LRLSKLTDYGTVIMTHLARNPGRIYSAAEVAAAIGVAVPTASKILKMLARHHLLESLRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP QI+I V+ A E + EC + + C G C + + + F
Sbjct: 62 NGGYLLARPPGQISIAQVIDAMEGPAGMTECSVAAGL-CAQEGLCAIRANWQSINQVIFS 120
Query: 121 VLTQYSIECLVR 132
L ++ + +
Sbjct: 121 ALNGVTLADMAQ 132
>gi|124268159|ref|YP_001022163.1| BadM/Rrf2 family transcriptional regulator [Methylibium
petroleiphilum PM1]
gi|124260934|gb|ABM95928.1| transcriptional regulator, BadM/Rrf2 family [Methylibium
petroleiphilum PM1]
Length = 184
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 9/139 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
HLT +YG+ L++ + +AE IS F+ KI L KAGIV G R
Sbjct: 3 HLTSSVEYGLHCLLWLVDAGETQPSSRDLAELQGISPSFVAKIFPKLEKAGIVAASAGVR 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL RPA++IT+LDVV A E + +C F G C + +V+
Sbjct: 63 GGYRLARPAERITVLDVVDAIEGDKPLFDCQEIRGRCAVFEGEAPRWATGGVCAIHAVML 122
Query: 113 KALNAFFDVLTQYSIECLV 131
+A + D L Q ++ L
Sbjct: 123 RAEKSMRDALAQETLAGLA 141
>gi|78186422|ref|YP_374465.1| hypothetical protein Plut_0538 [Chlorobium luteolum DSM 273]
gi|78166324|gb|ABB23422.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum
DSM 273]
Length = 136
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A D + ++AE S FL K +Q L +AGI +V+G
Sbjct: 2 LQVSRKFEYGLHAVAYLASRGVDRVVTVKEMAEEIGFSPEFLAKAMQSLTRAGIASSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R A+ IT+ D+ A E + + C +C + SC + N
Sbjct: 62 VKGGYQLARKAESITVADIGTAIEGAPHLVRCVVKAD-NCEIYSSCPHRGYMTSLQNRIQ 120
Query: 120 DVLTQYSIECLVR 132
+L +++ L+
Sbjct: 121 GLLASTTVQALLD 133
>gi|300778846|ref|ZP_07088704.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
35910]
gi|300504356|gb|EFK35496.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
35910]
Length = 135
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 6/135 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K++ Y + L Y N+ P IS+IAE I FL IL L KA I+++ +G+
Sbjct: 2 LSKKSQYAFKALSYLVEKRNEGPILISEIAEHKKIPLKFLENILLELKKADILDSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG + + + +++ + C + DC CGL VL + +A
Sbjct: 62 GGYFFKENPENVKLAKIIRLVNGPIAMLPCVSLNFYEKCEDCN-EDHCGLHDVLIEVRDA 120
Query: 118 FFDVLTQYSIECLVR 132
++L ++ LV
Sbjct: 121 SLNILESKTLMDLVD 135
>gi|94263797|ref|ZP_01287603.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1]
gi|93455808|gb|EAT05975.1| Protein of unknown function UPF0074 [delta proteobacterium MLMS-1]
Length = 131
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +R L Y + + +IA I FL KI + L AG+V RG
Sbjct: 1 MQITRETDYALRCLYYLVRRPEQVCMVDEIAAEMEIPRSFLAKIARKLAAAGLVVAHRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R + I+I +V+ A E + C K C C L V
Sbjct: 61 GGGFMLIRKPETISIHEVICAIEGEVALNICTGEEKR-CQRSDHCPLHPVWVNLRRDVEA 119
Query: 121 VLTQYSIECLV 131
+L + L+
Sbjct: 120 LLQARNFAELL 130
>gi|218438424|ref|YP_002376753.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Cyanothece sp. PCC 7424]
gi|218171152|gb|ACK69885.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7424]
Length = 147
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA + +L K+L + +AG+V+++RG
Sbjct: 1 MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L QI++ +++A E+ + D S+ ++
Sbjct: 61 CQGGYQLACEPSQISLGQILEAVGETIEP---LPRYNPDTEQAEDWVTFSLWKRLHLKLK 117
Query: 120 DVLTQYSIECL 130
+ L ++ L
Sbjct: 118 EALHSITLADL 128
>gi|302562103|ref|ZP_07314445.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
gi|302479721|gb|EFL42814.1| Rrf2 family protein [Streptomyces griseoflavus Tu4000]
Length = 151
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A P IA + I FL ++ L K G+V + RG
Sbjct: 8 MHISAKADYATRALLELAREPARPLTCEAIASSQQIPFRFLKSVVGELRKGGLVRSQRGC 67
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++IT+LD+ +A + + +D P + GL V R+
Sbjct: 68 EGGYWLGRPAEEITLLDISRAVDGELLTLRGESPATLDYPGAAA-GLPDVWRRIEADAAA 126
Query: 121 VLTQYSIECLV 131
VL ++ L+
Sbjct: 127 VLGGVTVASLL 137
>gi|294013386|ref|YP_003546846.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum
UT26S]
gi|292676716|dbj|BAI98234.1| BadM/Rrf2-family transcriptional regulator [Sphingobium japonicum
UT26S]
Length = 154
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + ++ A H + ++ I K++ L AG++E+ RG
Sbjct: 1 MRLSSFADYAVVLMSAAARHCGVAKMNATTLSAETGIPLPTAQKLVSRLSAAGLLESSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL RP IT+ DVV+A E + C DC L C + + A NA
Sbjct: 61 TGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIRPHMNVANNAIR 120
Query: 120 DVLTQYSIECLVRN 133
L +I L R
Sbjct: 121 SALAGVTIASLARE 134
>gi|269127656|ref|YP_003301026.1| BadM/Rrf2 family transcriptional regulator [Thermomonospora curvata
DSM 43183]
gi|268312614|gb|ACY98988.1| transcriptional regulator, BadM/Rrf2 family [Thermomonospora
curvata DSM 43183]
Length = 146
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD +R+ M A+ Q+AEA + K++ L G++E RG
Sbjct: 1 MRLTKFTDLALRISMRLAVADPAEVYTTKQVAEAVGAPYTHVAKVVSRLQHLGVLEARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L +I +++ E VA C CPL +C L L +A AF+
Sbjct: 61 RGGGLVLTERGRDASIGWLMRELEGYGDVAGC--EDSPPCPLRAACRLRGALSRAQEAFY 118
Query: 120 DVLTQYSIECLVRNRSS 136
L ++ LV S+
Sbjct: 119 AALDPVTVRELVEAPSA 135
>gi|158424803|ref|YP_001526095.1| hypothetical protein AZC_3179 [Azorhizobium caulinodans ORS 571]
gi|158331692|dbj|BAF89177.1| conserved hypothetical protein [Azorhizobium caulinodans ORS 571]
Length = 148
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ ++ A + N++++IAEA I + FL IL L AG + + +G+
Sbjct: 2 LTKKGKYGLKAAVHLARLGPGESNQVAEIAEANQIPKKFLDVILGELRNAGFLSSKKGKT 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG +L + + I + D+++A + C + DC + C + ++ K +A
Sbjct: 62 GGYKLAKLPEDIIVGDLIRALDGPLAPIPCASRNAFVPCDDCDVE-HCEVRRLMVKVRDA 120
Query: 118 FFDVLTQYSIECL 130
VL Y++ +
Sbjct: 121 MGTVLDTYTLAQM 133
>gi|284032632|ref|YP_003382563.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283811925|gb|ADB33764.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
17836]
Length = 159
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M ++ ++DY +R L+ ++ +++ A I FL IL L +AG++ +
Sbjct: 1 MRVSAKSDYALRALIEITQRWVANDPSVVSAEELSRAQGIPHGFLQGILADLRRAGVLSS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
RG+ GG +L ++I++ DV++A + + L V A
Sbjct: 61 QRGQSGGWKLAVDPNEISVADVMRAVDGPIVSISGVRPESVAYNERAV-VLQRVWIAARA 119
Query: 117 AFFDVLTQYSIECLVRNR 134
+ DVL ++ L + +
Sbjct: 120 SLRDVLEHTTLIDLAKGK 137
>gi|302536831|ref|ZP_07289173.1| transcriptional regulator [Streptomyces sp. C]
gi|302445726|gb|EFL17542.1| transcriptional regulator [Streptomyces sp. C]
Length = 152
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TD +RVLM A+ + ++A + K++ L G+VE RGR
Sbjct: 4 MRLTRFTDLALRVLMRLAVEDTDLPTTREVAATMEVPYTHTAKVVARLQHLGLVEARRGR 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L ++ VV+ E + V +C CPL G+C L LR+A AFF
Sbjct: 64 GGGLALTAAGRTASVGGVVRELEGAGDVVDC--DGASPCPLRGACVLRGALRRAQEAFFA 121
Query: 121 VLTQYSIECLVR 132
L ++ LV
Sbjct: 122 ALDPLTVNELVA 133
>gi|218531426|ref|YP_002422242.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Methylobacterium chloromethanicum CM4]
gi|218523729|gb|ACK84314.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
chloromethanicum CM4]
Length = 183
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 51/146 (34%), Positives = 76/146 (52%), Gaps = 6/146 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+HL+ TDYG+R+LM+ + +A+ IS L KI Q LV+AG+VE +G
Sbjct: 20 LHLSLHTDYGLRLLMHLTLAERGVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQG 79
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGVRL R A +I + +V E VA+C CPL+G C L A AFF
Sbjct: 80 RSGGVRLARDAREIRLGRLVADLEGVGTVADCRRD---PCPLLGRCRLKWAFDAAEQAFF 136
Query: 120 DVLTQYSIECLVRNRS--SIKKIFNA 143
L + ++ +V + +++ +F A
Sbjct: 137 LELDRLTLADVVAGPTAAALRSLFRA 162
>gi|30020894|ref|NP_832525.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|206971747|ref|ZP_03232696.1| rrf2 family protein [Bacillus cereus AH1134]
gi|218231378|ref|YP_002367487.1| rrf2 family protein [Bacillus cereus B4264]
gi|229079960|ref|ZP_04212491.1| Transcriptional regulator [Bacillus cereus Rock4-2]
gi|229128112|ref|ZP_04257094.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
gi|229150981|ref|ZP_04279192.1| Transcriptional regulator [Bacillus cereus m1550]
gi|229179055|ref|ZP_04306412.1| Transcriptional regulator [Bacillus cereus 172560W]
gi|29896447|gb|AAP09726.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|206733132|gb|EDZ50305.1| rrf2 family protein [Bacillus cereus AH1134]
gi|218159335|gb|ACK59327.1| rrf2 family protein [Bacillus cereus B4264]
gi|228604423|gb|EEK61887.1| Transcriptional regulator [Bacillus cereus 172560W]
gi|228632541|gb|EEK89159.1| Transcriptional regulator [Bacillus cereus m1550]
gi|228655387|gb|EEL11243.1| Transcriptional regulator [Bacillus cereus BDRD-Cer4]
gi|228703339|gb|EEL55794.1| Transcriptional regulator [Bacillus cereus Rock4-2]
Length = 133
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + EC K C + V+ A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC------LINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|217967934|ref|YP_002353440.1| BadM/Rrf2 family transcriptional regulator [Dictyoglomus turgidum
DSM 6724]
gi|217337033|gb|ACK42826.1| transcriptional regulator, BadM/Rrf2 family [Dictyoglomus turgidum
DSM 6724]
Length = 144
Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ + +YG+R +++ + +SQI++ IS FL +++ L +A +VE+ +G
Sbjct: 3 RVSAKLEYGLRAMIFLGKNYPHEKLTLSQISQEENISREFLAQLMSELRRANLVESYKGI 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +P +IT+ ++ +A E + +C C SC ++ D
Sbjct: 63 TGGYTLTKPPHEITLKEIFEALEGPIQIIDCIH-IDNKCNKERSCYSKNIWIFIEKKIID 121
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
+L ++E L+ ++I
Sbjct: 122 LLGSLTLEDLINGTIRKEEIL 142
>gi|254384664|ref|ZP_05000003.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194343548|gb|EDX24514.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 163
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ TD +RVLM A+ + +A + K++ L G++E RGR
Sbjct: 13 MRLTRFTDLALRVLMRLAVADADLPTTRDVAATMEVPYTHSAKVVARLRHLGLIEARRGR 72
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L ++ VV+ E + V +C + CPL G+C L LR A AFF
Sbjct: 73 GGGLALTAAGRAASVGGVVRELEGAGDVVDC--DGAVPCPLRGACVLRGALRGAQEAFFA 130
Query: 121 VLTQYSIECLVR 132
L ++ LV
Sbjct: 131 ALDPLTVNDLVA 142
>gi|330466620|ref|YP_004404363.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328809591|gb|AEB43763.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
maris AB-18-032]
Length = 151
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 51/134 (38%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R + A I+ + FL +L L +AG+V RG
Sbjct: 1 MQISARGDYAVRAALSLAAAYPALLSTQTISAEQDMPRKFLEAVLADLRRAGVVRAQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP ++T+ V++A E + V L +
Sbjct: 61 EGGYALARPPREVTVGAVLRAVEGPLAGVRGLRPEETSYEGVAQ-HLPGFWVAVRASLRR 119
Query: 121 VLTQYSIECLVRNR 134
V+ + S+ ++ R
Sbjct: 120 VVDEVSLADVLSGR 133
>gi|302866226|ref|YP_003834863.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
ATCC 27029]
gi|315502784|ref|YP_004081671.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
gi|302569085|gb|ADL45287.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
ATCC 27029]
gi|315409403|gb|ADU07520.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
Length = 151
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R + A IA + FL +L L +AG+V RG
Sbjct: 1 MQISARGDYAVRAALSLATAYPTLLSTQAIAAEQDMPRKFLEAVLADLRRAGVVRAQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +ITI V++A + + L + +
Sbjct: 61 EGGYTLARPPREITIGHVLRAVDGPLAGVRGLRPEETRYEGAAE-NLPRLWVAVRASVRR 119
Query: 121 VLTQYSIECLVRNR 134
V+ + S++ LV R
Sbjct: 120 VVDEVSLDELVSGR 133
>gi|148558060|ref|YP_001257984.1| RrF2 family protein [Brucella ovis ATCC 25840]
gi|148369345|gb|ABQ62217.1| RrF2 family protein [Brucella ovis ATCC 25840]
Length = 143
Score = 101 bits (252), Expect = 4e-20, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVLASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC C + V+ A
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREA 120
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 121 IANVLDHRTLAD 132
>gi|75908723|ref|YP_323019.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
ATCC 29413]
gi|75702448|gb|ABA22124.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
ATCC 29413]
Length = 145
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y I L+ A H + P +I QIA I + +L ++L L + GI+ + R
Sbjct: 1 MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG L R +I+I ++++ E + + + + + ++A A
Sbjct: 61 GSRGGYFLAREPRKISIFEILECLEGLEVKT---SEENLKSQTLDGSVIEEIWQEARQAA 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
VL +YS++ L R S +++
Sbjct: 118 NSVLKKYSLQDLCEKRDSRRQL 139
>gi|52785847|ref|YP_091676.1| hypothetical protein BLi02094 [Bacillus licheniformis ATCC 14580]
gi|163119474|ref|YP_079257.2| putative transcriptional regulator [Bacillus licheniformis ATCC
14580]
gi|52348349|gb|AAU40983.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
gi|145902981|gb|AAU23619.2| putative transcriptional regulator [Bacillus licheniformis ATCC
14580]
Length = 133
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L KAG++E+ G
Sbjct: 1 MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R + I+ LD++ A E + + +C +H +C + V+ A +
Sbjct: 61 ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNHGSEC------VIQKVMVSAEDEME 114
Query: 120 DVLTQYSIECLVRN 133
+ L Q I L +
Sbjct: 115 NYLRQQKISDLAKK 128
>gi|15892655|ref|NP_360369.1| hypothetical protein RC0732 [Rickettsia conorii str. Malish 7]
gi|15619826|gb|AAL03270.1| unknown [Rickettsia conorii str. Malish 7]
Length = 139
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A + P +++++ IS +L +I L KA +V+ +RG
Sbjct: 1 MMLTTKGRYAVMAILEMASKSSTEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
+GG L ++I I D++ A E+F + C+ C P C + +
Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
D SI+ + + +I
Sbjct: 121 RDYFENISIKDALNSNLNI 139
>gi|168178952|ref|ZP_02613616.1| RRF2 family protein [Clostridium botulinum NCTC 2916]
gi|170756920|ref|YP_001783003.1| putative transcriptional regulator [Clostridium botulinum B1 str.
Okra]
gi|226950815|ref|YP_002805906.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|169122132|gb|ACA45968.1| putative transcriptional regulator [Clostridium botulinum B1 str.
Okra]
gi|182670202|gb|EDT82178.1| RRF2 family protein [Clostridium botulinum NCTC 2916]
gi|226841169|gb|ACO83835.1| RRF2 family protein [Clostridium botulinum A2 str. Kyoto]
Length = 133
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKIVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + I+ LD++ A E + +C +C + V+ A
Sbjct: 61 VNGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLDSPSEC------VIKKVMLSAEKKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I LV+
Sbjct: 115 EELRNQKISDLVKK 128
>gi|157371753|ref|YP_001479742.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans
568]
gi|157323517|gb|ABV42614.1| transcriptional regulator, BadM/Rrf2 family [Serratia
proteamaculans 568]
Length = 180
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +YGI L++ N ++AE IS FL KI L KAGIV G RG
Sbjct: 4 ITTSVEYGIHCLLWLVGDNQRALSSRELAELQGISPSFLAKIFPKLEKAGIVAASEGVRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRK 113
G RL RPAD+IT L+++ A E + +C F + D L G C + +V+ +
Sbjct: 64 GYRLARPADEITFLEIIDAIEGHKPLFDCQEVRGRCAVFDDNPPDWALSGKCAIHAVMLQ 123
Query: 114 ALNAFFDVLTQYSI 127
A A D L ++
Sbjct: 124 AEKAMRDALAVQTL 137
>gi|269119309|ref|YP_003307486.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Sebaldella termitidis ATCC 33386]
gi|268613187|gb|ACZ07555.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
ATCC 33386]
Length = 164
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH + +Y + L+Y A + P + ++AE ISE +L KI L K GIV+ G
Sbjct: 1 MHYSVGVEYALHCLIYLATPSVKPVLTVKELAEFQGISETYLSKIFTKLSKNGIVKATPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----------SHKIDCPLVGSCGLT 108
GG +L + +T DVV+A E + C + +CP C +
Sbjct: 61 VTGGYQLKQDPSVVTFWDVVQAVEGEKQIFRCKNIIGTCALHDKKTEAEECPGKVDCLIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
V+ A L + +++
Sbjct: 121 DVMLDAEKQMELYLKEKNLK 140
>gi|77165949|ref|YP_344474.1| hypothetical protein Noc_2491 [Nitrosococcus oceani ATCC 19707]
gi|254433726|ref|ZP_05047234.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27]
gi|76884263|gb|ABA58944.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
ATCC 19707]
gi|207090059|gb|EDZ67330.1| FeS assembly SUF system regulator [Nitrosococcus oceani AFC27]
Length = 158
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K TDY I ++ A+ + + ++ + + KIL+ L +AG++ + RG
Sbjct: 2 LRMSKMTDYAIVLMTRLAMDPKGQHAAADLSAQVEMPLPTVSKILKQLARAGLLLSARGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L RP + I++ +++ E + EC + +C C + + A +
Sbjct: 62 QGGYSLGRPPEAISVAEIITILEGPIGLTECVS-TPGECGQEAHCSTRAHWEQINQAVYG 120
Query: 121 VLTQYSIECLVR 132
L + + +V+
Sbjct: 121 ALNEIKLSDMVQ 132
>gi|307323873|ref|ZP_07603082.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306890322|gb|EFN21299.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 158
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + DY +R L A D P IA + I FL + + L +AG+V + RG
Sbjct: 23 MQISAKADYAVRALAELAADTDRPLTCEAIATSQGIPFRFLKAVFRDLRQAGLVRSQRGC 82
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R ++T+ D+V A + +F + + GL V R +
Sbjct: 83 EGGYWLARDPAEMTLADIVLAVDGAFLTLRGERLDDLGYH-GPAAGLPGVWRGMEDHVRQ 141
Query: 121 VLTQYSIECLVRNR 134
VLT ++ LVR R
Sbjct: 142 VLTATALSDLVRER 155
>gi|296535637|ref|ZP_06897815.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis
ATCC 49957]
gi|296264032|gb|EFH10479.1| BadM/Rrf2 family transcriptional regulator [Roseomonas cervicalis
ATCC 49957]
Length = 151
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 54/117 (46%), Gaps = 1/117 (0%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A+ + P +++IA+A +S +L ++ L +AG+V++ RG GG RL RPA+ I I
Sbjct: 24 AVTRERPVSLAEIAQAQLLSVAYLEQLFARLRRAGLVDSARGPGGGYRLARPAEAIAIGT 83
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+++A +E C C C + + L ++ +V R
Sbjct: 84 IIEAVDEPISATRC-EEGSPGCLAGNRCLTHDLWHELGEQIRLFLENVTLADVVEQR 139
>gi|1381739|gb|AAB09668.1| HI0379 homolog [Neisseria meningitidis]
Length = 150
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + ++ A++ ++S I+E IS +L ++ L +AG+VE++RG
Sbjct: 1 MRLTTKGLSAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PA +I I ++ A E+ +C K +C C +
Sbjct: 61 PGGGYILAAPAARINIAQIIAAAEDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTIN 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L +++ ++ ++
Sbjct: 119 DYLGSVTLQSIIETEKQRRR 138
>gi|145223660|ref|YP_001134338.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315443986|ref|YP_004076865.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Mycobacterium sp. Spyr1]
gi|145216146|gb|ABP45550.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum
PYR-GCK]
gi|315262289|gb|ADT99030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp.
Spyr1]
Length = 148
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 42/137 (30%), Positives = 64/137 (46%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD G+R +M + D +IA + SE + K + LV+ G+VE R
Sbjct: 1 MQLTRFTDLGLRAMMLLSAGEFADKRVTTGRIAASAGASENHIAKAVSRLVELGLVEARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L ++ +V+ E V C CPL+ C L L +A AF
Sbjct: 61 GRIGGLSLTEAGRTASVGWLVRELEGDREVVNCQGE--TACPLIAGCRLRHALARAKEAF 118
Query: 119 FDVLTQYSIECLVRNRS 135
+ L Y++ L R+ +
Sbjct: 119 YAELDNYTVSDLARSPT 135
>gi|256158354|ref|ZP_05456254.1| RfF2 family protein [Brucella ceti M490/95/1]
gi|256252715|ref|ZP_05458251.1| RfF2 family protein [Brucella ceti B1/94]
gi|260166777|ref|ZP_05753588.1| RfF2 family protein [Brucella sp. F5/99]
gi|261219794|ref|ZP_05934075.1| transcriptional regulator [Brucella ceti B1/94]
gi|261756154|ref|ZP_05999863.1| RRF2 family protein [Brucella sp. F5/99]
gi|265996865|ref|ZP_06109422.1| transcriptional regulator [Brucella ceti M490/95/1]
gi|260918378|gb|EEX85031.1| transcriptional regulator [Brucella ceti B1/94]
gi|261736138|gb|EEY24134.1| RRF2 family protein [Brucella sp. F5/99]
gi|262551162|gb|EEZ07323.1| transcriptional regulator [Brucella ceti M490/95/1]
Length = 143
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC + V+ A
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAEWQVRHVMLDVREA 120
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 121 IANVLDHRTLAD 132
>gi|225628410|ref|ZP_03786444.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str.
Cudo]
gi|225616256|gb|EEH13304.1| transcriptional regulator, Rrf2 family protein [Brucella ceti str.
Cudo]
Length = 166
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++++A + + C + DC + V+ A
Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAEWQVRHVMLDVREA 143
Query: 118 FFDVLTQYSIEC 129
+VL ++
Sbjct: 144 IANVLDHRTLAD 155
>gi|298530274|ref|ZP_07017676.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
thiodismutans ASO3-1]
gi|298509648|gb|EFI33552.1| transcriptional regulator, BadM/Rrf2 family [Desulfonatronospira
thiodismutans ASO3-1]
Length = 143
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ +Y +R ++Y A ++A+A I E F+ K+ Q L +AGI++ +
Sbjct: 1 MMLTRGGEYAVRCVLYLAACTTPGQVAPKKEVAQAMQIPESFMAKVAQTLSRAGIIQITQ 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG RL + ++++L VV+A + F+ +C S C SCG+ V A
Sbjct: 61 GARGGYRLLKDPSRLSLLQVVEAVDGEIFLNQCIMSP-ESCRRSPSCGVHRVWETARQRL 119
Query: 119 FDVLTQYSIECLVRNR 134
L + L R
Sbjct: 120 RQTLDETDFATLAREE 135
>gi|108797889|ref|YP_638086.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS]
gi|119866984|ref|YP_936936.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS]
gi|108768308|gb|ABG07030.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS]
gi|119693073|gb|ABL90146.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS]
Length = 153
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD G+R +M A + IA SE + K + L + G+V R
Sbjct: 1 MQLTRFTDLGLRTMMLLAAGEVDGQRVTTRTIAAGANASEHHIAKAVARLAELGMVHARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L ++ +V+ E V EC CPL+ +C L + A AF
Sbjct: 61 GRVGGLTLTDAGRDASVGWLVRRLEGDREVIECGGED--PCPLLAACRLRKAMSDAKEAF 118
Query: 119 FDVLTQYSIECLVR 132
+ L +Y+I L
Sbjct: 119 YRELDRYTITDLAA 132
>gi|17232043|ref|NP_488591.1| hypothetical protein alr4551 [Nostoc sp. PCC 7120]
gi|17133687|dbj|BAB76250.1| alr4551 [Nostoc sp. PCC 7120]
Length = 145
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 71/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y I L+ A H + P +I QIA I + +L ++L L + GI+ + R
Sbjct: 1 MELSCKSEYAILALLEMATHYDSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGILRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG L R +I+I ++++ E + + + + + + ++A A
Sbjct: 61 GSRGGYFLAREPRKISIFEILECLEGLEVKT---SEENLKSQTLDASVIEEIWQEARQAA 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
VL +YS++ L R S +++
Sbjct: 118 NSVLKKYSLQDLCEKRDSRRQL 139
>gi|85704358|ref|ZP_01035461.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217]
gi|85671678|gb|EAQ26536.1| hypothetical protein ROS217_15206 [Roseovarius sp. 217]
Length = 156
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY +RVL+Y A + I + + IS L K++ L+ G +E VRG
Sbjct: 1 MRLTKFTDYSLRVLLYAATLKPKQLTTIEETSNLYGISRAHLKKVVLGLIHEGFLEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL PA +I + +++ TE F +AECF C + C L VL AL+ F
Sbjct: 61 RSGGFRLAMPAHEINLGQLLRKTEPDFALAECFLPENA-CRVTKGCRLPIVLNLALSNFL 119
Query: 120 DVLTQYSIECLV 131
+++ +
Sbjct: 120 KTFDDFTLADVA 131
>gi|325915080|ref|ZP_08177408.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
vesicatoria ATCC 35937]
gi|325538692|gb|EGD10360.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
vesicatoria ATCC 35937]
Length = 152
Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A + S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARSGEVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A QIT++++V+A E + EC H C + +CG+ S R + D
Sbjct: 62 HGGYRLARDAGQITLVEIVEAMEGPLAITECSQDHSQ-CGIAQTCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|134300796|ref|YP_001114292.1| BadM/Rrf2 family transcriptional regulator [Desulfotomaculum
reducens MI-1]
gi|134053496|gb|ABO51467.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
reducens MI-1]
Length = 137
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R ++Y + IAE I FL KIL+ L AGI+E+ RG
Sbjct: 1 MKLNQATDYAFRAVLYLSRLPKGQVSEAKAIAEQENIPIRFLLKILRSLTAAGIIESYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L R IT+LDVV+A E V C A + C + L
Sbjct: 61 VSGGYALAREPKDITMLDVVEAVEGPVEVNRCLIAPESCNKNHTARCPMHRALYAIQQNL 120
Query: 119 FDVLTQYSIECL 130
L Y+ L
Sbjct: 121 NQQLNSYNFADL 132
>gi|27364702|ref|NP_760230.1| transcriptional repressor NsrR [Vibrio vulnificus CMCP6]
gi|37681247|ref|NP_935856.1| transcriptional repressor NsrR [Vibrio vulnificus YJ016]
gi|320155095|ref|YP_004187474.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
MO6-24/O]
gi|81448739|sp|Q8DCU1|NSRR_VIBVU RecName: Full=HTH-type transcriptional repressor nsrR
gi|81859821|sp|Q7MH10|NSRR_VIBVY RecName: Full=HTH-type transcriptional repressor nsrR
gi|27360847|gb|AAO09757.1| Nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
CMCP6]
gi|37199998|dbj|BAC95827.1| predicted transcriptional regulator [Vibrio vulnificus YJ016]
gi|319930407|gb|ADV85271.1| nitrite-sensitive transcriptional repressor NsrR [Vibrio vulnificus
MO6-24/O]
Length = 141
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TDY +R L+Y A + ++ I+ + E +S + K++ L + ++TVRG
Sbjct: 1 MQLTSFTDYALRTLIYLASLPDNEQTNITDVTELFGVSRNHMVKVINRLGQLNYIQTVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG+RL RPA I + +VV+ E + C C + +C L L +A AF
Sbjct: 61 KNGGIRLNRPAKTILVGEVVRDL-EPLDLVNCSVEF---CHITPACRLKERLYRAKLAFL 116
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
L SI L+ + + + +
Sbjct: 117 AELDDCSIAELLDDNAELLILL 138
>gi|330469219|ref|YP_004406962.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328812190|gb|AEB46362.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
AB-18-032]
Length = 153
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M L+ R DY +R + A P QIA A I FL IL L + GI++
Sbjct: 1 MRLSARVDYALRAVTELASVTGAGRGRPVTADQIARAQDIPPKFLESILLQLRRGGIMQA 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
RG GG L RPA++I++ DV++ + ++ L V
Sbjct: 61 QRGPEGGYWLARPAEEISLADVIRVIDGPLAHIRGQRPEQLGYQGAAR-ALQDVWIALRA 119
Query: 117 AFFDVLTQYSIECLVR 132
+L ++ + +
Sbjct: 120 NERQILELVTVADVAQ 135
>gi|157828607|ref|YP_001494849.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165933321|ref|YP_001650110.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
gi|229586808|ref|YP_002845309.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
africae ESF-5]
gi|238650793|ref|YP_002916648.1| Rrf2 family protein [Rickettsia peacockii str. Rustic]
gi|157801088|gb|ABV76341.1| hypothetical protein A1G_04135 [Rickettsia rickettsii str. 'Sheila
Smith']
gi|165908408|gb|ABY72704.1| Rrf2 family protein [Rickettsia rickettsii str. Iowa]
gi|228021858|gb|ACP53566.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
africae ESF-5]
gi|238624891|gb|ACR47597.1| Rrf2 family protein [Rickettsia peacockii str. Rustic]
Length = 139
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A + P +++++ IS +L +I L KA +V+ +RG
Sbjct: 1 MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
+GG L ++I I D++ A E+F + C+ C P C + +
Sbjct: 61 SKGGYILIGNLEEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
D SI+ + + +I
Sbjct: 121 RDYFENISIKDALNSNLNI 139
>gi|300723225|ref|YP_003712525.1| hypothetical protein XNC1_2289 [Xenorhabdus nematophila ATCC 19061]
gi|297629742|emb|CBJ90348.1| conserved hypothetical protein [Xenorhabdus nematophila ATCC 19061]
Length = 180
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T +YGI L++ + D ++AE IS FL KIL L KAGIV + G RG
Sbjct: 4 ITVSVEYGIHCLLWFVDNPDRSLSSRELAELQGISPSFLAKILPRLEKAGIVNSNEGIRG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTSVLR 112
G RL PA++IT L ++ A E + EC ++ D + +C + V+
Sbjct: 64 GYRLALPAEKITFLSIIDAIEGYKPLFECQEVRQRCAIFENTNPPDWAISDTCSVHKVIL 123
Query: 113 KALNAFFDVLTQYSIECLVRN 133
+A A DVL ++ +
Sbjct: 124 QAEKAMRDVLANQTLADVASR 144
>gi|148284617|ref|YP_001248707.1| iron-sulfur cluster assembly transcription regulation factor
[Orientia tsutsugamushi str. Boryong]
gi|146740056|emb|CAM80173.1| iron-sulfur cluster assembly transcription regulation factor
[Orientia tsutsugamushi str. Boryong]
Length = 148
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 30/142 (21%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT ++ Y + ++ A + P ++ +IA+ I+ +L ++ L GIV++V+G
Sbjct: 1 MILTTKSKYAVMGVLDIASRESSKPAKLFEIAKRQNIALNYLEQLFNKLKNKGIVKSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
GG L + TI D++ A EE + C ++ C L C + +
Sbjct: 61 PNGGYLLSCDIKKTTINDIIFAVEEKIQITRC--NNSKGCLALNIRCTAHYLWEELEYKI 118
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
++ S++ ++ + + +
Sbjct: 119 KHYFSEISLDDIISGKVKSQAL 140
>gi|125654633|ref|YP_001033827.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
2.4.1]
gi|126464902|ref|YP_001041878.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|221634495|ref|YP_002523183.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
KD131]
gi|332561319|ref|ZP_08415634.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
WS8N]
gi|77386293|gb|ABA81722.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides 2.4.1]
gi|126106717|gb|ABN79242.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17029]
gi|221163368|gb|ACM04330.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
KD131]
gi|332274118|gb|EGJ19435.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
WS8N]
Length = 169
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+T++ Y ++ LM A P RI IA+ + FL IL + AG + + RG
Sbjct: 2 ITQKMKYALKALMVLAEEKSGDRRPLRIEDIAQRSGTPKRFLEHILLDIRNAGYIASTRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115
R GG L + Q+ + ++++ + C + DC +C + V
Sbjct: 62 RSGGYLLIKEPAQVPLSELLRMIDGPIAPLPCLSRRSYQKCEDCTDEETCRIRKVFAGIF 121
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
++ ++ ++ LV ++ ++I A
Sbjct: 122 WSYLVLIDSLTLADLVGVPAAAEQILAA 149
>gi|312129033|ref|YP_003996373.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
byssophila DSM 17132]
gi|311905579|gb|ADQ16020.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
byssophila DSM 17132]
Length = 139
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 62/134 (46%), Gaps = 6/134 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++K+ Y ++ L ++ + P IS+I+E I + FL IL L GI+++ +G+
Sbjct: 2 ISKKAKYALKALTRLTLNYETRKPLLISEISETENIPKKFLEAILLELRNNGILQSQKGK 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
GG L P ++ I +++ + C + DC +C + ++++ +
Sbjct: 62 GGGYLLKLPPAEVKIARIIRVIDGPIAPLLCVSLHFYDKCEDCSSEEACKIRPLMQQIRD 121
Query: 117 AFFDVLTQYSIECL 130
A V +++ L
Sbjct: 122 ANLTVYENTTLQDL 135
>gi|22298046|ref|NP_681293.1| hypothetical protein tlr0503 [Thermosynechococcus elongatus BP-1]
gi|22294224|dbj|BAC08055.1| tlr0503 [Thermosynechococcus elongatus BP-1]
Length = 145
Score = 101 bits (251), Expect = 5e-20, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 70/142 (49%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y + L+ A P +I QIA I + +L +++ L + G++ + R
Sbjct: 1 MELSAKSEYALLALLEMSAAYEQGEPLQIRQIAAMHNIPDRYLEQLMATLRRKGLIRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG L + QI+ILDV+ E + A D + + SV +A A
Sbjct: 61 GARGGYVLAKAPWQISILDVLNCIEG---IESKLAQKPPDNGDLERSLIRSVWLEACKAA 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
DVL +Y+++ L R + +++
Sbjct: 118 NDVLKKYTLQDLCDRRQAYQQV 139
>gi|197301334|ref|ZP_03166419.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC
29176]
gi|197299652|gb|EDY34167.1| hypothetical protein RUMLAC_00065 [Ruminococcus lactaris ATCC
29176]
Length = 147
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K++ YG+R L+ A+++ + IA+ IS +L + L KA IV++++G
Sbjct: 1 MKLSKKSRYGLRALIDLAVNSRTEQVSLGSIAQRNDISAQYLEHVFSALRKAHIVKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + IT+ ++V+A E S+++ + + ++ +
Sbjct: 61 SQGGYFLEKAPELITVAEIVEALEGSYYLEDEEGDMSGLRGDQEAIQ-HLIIDRINEKNR 119
Query: 120 DVLTQYSIECLVR 132
++L +++ LV
Sbjct: 120 EILEDITLKDLVE 132
>gi|330683915|gb|EGG95683.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
VCU121]
Length = 140
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRS 135
DVL +++ L +
Sbjct: 113 DVLDNTTLQYLAEYKE 128
>gi|315301845|ref|ZP_07872874.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596]
gi|313629782|gb|EFR97886.1| putative transcriptional regulator [Listeria ivanovii FSL F6-596]
Length = 138
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G
Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKTVGVKELAIKQNVSPTYLSKVLTMLVKASFVESITG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +PA+ I+ LDV++A E C + + C + V+ A
Sbjct: 61 VNGGYKLAKPANDISFLDVIQAIEGKTAFFHCDPKNHAE--SKPHCLIGEVMDNAEQQME 118
Query: 120 DVLTQYSIECLV 131
L++ +I +V
Sbjct: 119 AYLSEQTIGSIV 130
>gi|258591782|emb|CBE68083.1| Transcriptional regulator, BadM/Rrf2 family [NC10 bacterium 'Dutch
sediment']
Length = 136
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 2/128 (1%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+ A+H + P +I IA+ + +L +IL L +AG +E+ RG GG L + +
Sbjct: 1 MQDLALHYEQGPIQIEDIAKRQHLPARYLEQILLSLKRAGFLESKRGVSGGYYLAKHPRE 60
Query: 73 ITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
IT+ +++A E C S + + C C L + + +A ++ + S+E L
Sbjct: 61 ITVGAIIRAMEGPIVPIFCVGSGQREICIEEPQCCLRDIWAEVRDAVSHIVDRTSLEDLC 120
Query: 132 RNRSSIKK 139
+ ++
Sbjct: 121 GQIRARRE 128
>gi|291295308|ref|YP_003506706.1| BadM/Rrf2 family transcriptional regulator [Meiothermus ruber DSM
1279]
gi|290470267|gb|ADD27686.1| transcriptional regulator, BadM/Rrf2 family [Meiothermus ruber DSM
1279]
Length = 173
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K Y ++L Y A D ++++A + +L +IL LV +V + +G
Sbjct: 1 MRLSKTDIYAFKILGYLGAQAPDRLVGSEELSKATGVPHTYLARILAALVGHNLVLSKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTS-VLRKALNA 117
+ GG L RPA++I + DV++A + C + + C C S V K +A
Sbjct: 61 QGGGYALPRPAEEINLRDVIRAVDGPIAPLACVSLNWPKACVEERRCHARSVVWLKVRDA 120
Query: 118 FFDVLTQYSIECLVRN 133
+L+Q S+ L +
Sbjct: 121 ALQILSQVSVADLAAD 136
>gi|289664563|ref|ZP_06486144.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
vasculorum NCPPB702]
gi|289671188|ref|ZP_06492263.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
musacearum NCPPB4381]
Length = 152
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A H D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAAHCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC H C + CG+ S R + D
Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHSQ-CGIAQRCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|94496618|ref|ZP_01303194.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
sp. SKA58]
gi|94423978|gb|EAT09003.1| transcriptional regulator, BadM/Rrf2 family protein [Sphingomonas
sp. SKA58]
Length = 136
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + ++ A H + +A I K++ L AG++E+ RG
Sbjct: 1 MRLSSFADYAVVLMSAAARHCGGARMNATTLAAETGIPLPTAQKLVSRLSGAGLLESSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGVRL RP IT+ DVV+A E + C DC L C + + A NA
Sbjct: 61 TGGGVRLSRPPATITLADVVEAVEGPIAMTACAEMGAHDCNLERDCRIRPHMNVANNAIR 120
Query: 120 DVLTQYSIECLVRN 133
L +I L R
Sbjct: 121 QALAGVTIASLTRE 134
>gi|154244166|ref|YP_001415124.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
autotrophicus Py2]
gi|154158251|gb|ABS65467.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
autotrophicus Py2]
Length = 148
Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ ++ A + +++ IAEA I + FL IL L AG + + +G+
Sbjct: 2 LTKKGKYGLKAAVHLARLPPGASTQVADIAEANNIPKKFLDVILGELRNAGFLSSKKGKL 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL R ++I + ++++A + C + DC + +C + ++ + +A
Sbjct: 62 GGYRLARAPEEIVVGEMIRALDGPLAPFACASRNAYEQCEDCDV-ATCEVRMLMVQVRDA 120
Query: 118 FFDVLTQYSIECL 130
VL Y++ +
Sbjct: 121 IGTVLDTYTLAQM 133
>gi|332186375|ref|ZP_08388120.1| feS assembly SUF system regulator [Sphingomonas sp. S17]
gi|332013743|gb|EGI55803.1| feS assembly SUF system regulator [Sphingomonas sp. S17]
Length = 151
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + ++ A + + +A + K++ L AG++E+ RG
Sbjct: 1 MRLSSLADYAVVMMTAAAREGVGGRSNATLLAGQTGVPLPTAQKLVSRLAGAGLIESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL R AD I++ D+V+A + + C DC L C + A
Sbjct: 61 TGGGIRLARDADAISLADIVEAVDGPIALTACVEGAAHDCGLEMQCRVRPHWHVVNQAVR 120
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
+ ++ L + ++ +A
Sbjct: 121 AAFSGVTLATLAADPVE-SQVMDA 143
>gi|327405892|ref|YP_004346730.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
DSM 16823]
gi|327321400|gb|AEA45892.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
DSM 16823]
Length = 151
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ KR+ Y I+ L A + I+ IAE I FL IL L G+V + G
Sbjct: 2 IPKRSKYAIQALKCLAKVYRDKKHLSIATIAEEENIPRKFLEAILLQLRNGGMVGSKMGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
GG L + D+I + +++ T + C + I+CP CGL V+ +
Sbjct: 62 NGGYFLVKHPDEIVLSSIIRVTGGPIALLPCVSLNFYEECIECPHEELCGLHDVMLEVRE 121
Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
A +L++ S+ L+ + +
Sbjct: 122 ASIHILSKTSLADLILREKKLMR 144
>gi|222106516|ref|YP_002547307.1| hypothetical protein Avi_5475 [Agrobacterium vitis S4]
gi|221737695|gb|ACM38591.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 155
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + IS+IA I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLAQLGPGETAFISEIALRNNIPKKFLDTILLELRNGGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L PA +I I ++ + C + DC +C + + + +A
Sbjct: 62 GGYSLSHPASEIRIGHAIRLLDGPLAPIRCASRTAFEACDDCADPVNCQVRRSMTQVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++E V
Sbjct: 122 IAAILDNMTLEQFVA 136
>gi|320352697|ref|YP_004194036.1| BadM/Rrf2 family transcriptional regulator [Desulfobulbus
propionicus DSM 2032]
gi|320121199|gb|ADW16745.1| transcriptional regulator, BadM/Rrf2 family [Desulfobulbus
propionicus DSM 2032]
Length = 159
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRIS-QIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +Y IR ++Y + +IA I FL KI Q L K G++E +G
Sbjct: 1 MRLTRAAEYAIRCMIYLSRQGQGVLTSRQEIAAQADIPPNFLAKIAQDLAKTGLIEIRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG+ L R I++L+VV+ ++ +C A C C + V A +
Sbjct: 61 ARGGLVLNRHPAAISLLEVVEIMIGEIYLNDCVARP-AACKAQRYCAVHRVWLDARDQLR 119
Query: 120 DVLTQYSIECLVRNRSSI 137
D L + + + L + + +
Sbjct: 120 DTLRRVNFDQLSADSTCL 137
>gi|301167345|emb|CBW26927.1| putative DNA-binding protein [Bacteriovorax marinus SJ]
Length = 179
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y +R ++ H++ P R+ +I++ IS +L ++ + L V++VRG
Sbjct: 1 MRLTSKGRYAVRAMLDLTTHSNGNPVRLQEISQRQNISLHYLEQLFRKLRNGQAVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-ECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L R DQIT+ D+++ E+ A + + V + +
Sbjct: 61 PGGGYVLARSMDQITVKDILECVGENINPAKDILGTEAEQASTVEFHLSKNYFQNLGVIM 120
Query: 119 FDVLTQYSIECLVRNRS 135
D L+ S+ L+R +
Sbjct: 121 RDYLSTTSLGDLMRKSN 137
>gi|300113345|ref|YP_003759920.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
C-113]
gi|299539282|gb|ADJ27599.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
C-113]
Length = 158
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K TDY I ++ A+ + + ++ + + KIL+ L +AG++ + RG
Sbjct: 2 LRMSKMTDYAIVLMTRLAMDPKGQHAATDLSAQVEMPLPTVSKILKQLARAGLLVSSRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L + + I++ +++ E + EC + +C C + + A +
Sbjct: 62 QGGYSLGKSPEAISVAEIITILEGPIGLTECVS-TPGECGQEAHCATRAHWEQINQAVYG 120
Query: 121 VLTQYSIECLVR 132
L + + +V+
Sbjct: 121 ALNEIKLSDMVQ 132
>gi|197121676|ref|YP_002133627.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Anaeromyxobacter sp. K]
gi|196171525|gb|ACG72498.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
K]
Length = 160
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG
Sbjct: 5 LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I+ LDV+++ E + C C +C + SV R
Sbjct: 65 PHGGYALARMPADISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERML 123
Query: 120 DVLTQYSIECLV 131
DV Q + L
Sbjct: 124 DVYRQAKLSELA 135
>gi|295836021|ref|ZP_06822954.1| Rrf2 family protein [Streptomyces sp. SPB74]
gi|295825840|gb|EFG64521.1| Rrf2 family protein [Streptomyces sp. SPB74]
Length = 161
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 62/136 (45%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + DY R L+ A ++P +A + I FL ++ L +AG+V + RG
Sbjct: 1 MQISAKADYAARALVELASRPEHPLTCEAMASSQGIPFRFLKSVVGELRRAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++I++LDVV+A + + P + L + R +
Sbjct: 61 EGGYWLGRPAEEISLLDVVRAVDGEVLTVRGTVPAHLAYP-GPAAALPGLWRTLEERARE 119
Query: 121 VLTQYSIECLVRNRSS 136
+L S+ L R +
Sbjct: 120 LLGAVSLASLAREAAQ 135
>gi|261855791|ref|YP_003263074.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Halothiobacillus neapolitanus c2]
gi|261836260|gb|ACX96027.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
neapolitanus c2]
Length = 168
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +++ +DY I +L A +++ ++ + K+++ L ++ + +GR
Sbjct: 2 LKISRMSDYAIVLLTAMAKLASEQQTARALSDQTGLTLPTVGKLVKMLAANELLCSQQGR 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPAD+I++ D++++ + + ECF + DC CGL + +
Sbjct: 62 HGGYRLARPADKISLADIIESIDGPIAMTECFT-VEHDCEREADCGLKPHWKAINDGVRQ 120
Query: 121 VLTQYSIECLVR 132
+L + ++ L+
Sbjct: 121 LLDRTTLAELIE 132
>gi|229133660|ref|ZP_04262486.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
gi|228649695|gb|EEL05704.1| Transcriptional regulator [Bacillus cereus BDRD-ST196]
Length = 133
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I+ LD++ A E + EC H+ C + V+ +A
Sbjct: 61 PKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCLHHEPGC------VINEVMLEAEGKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIADLTKK 128
>gi|313620173|gb|EFR91654.1| putative transcriptional regulator [Listeria innocua FSL S4-378]
Length = 138
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 3/125 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKAG VE+V G
Sbjct: 1 MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKAGFVESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA+ I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPANSISFLDVIQAIEGKAAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQ 124
D L++
Sbjct: 119 DYLSK 123
>gi|319953691|ref|YP_004164958.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola
DSM 14237]
gi|319422351|gb|ADV49460.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola
DSM 14237]
Length = 136
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YG++ L + A D P +IS+IA A IS+ FL IL L K G + + +G+
Sbjct: 2 LSKKTKYGLKALTFLAQQVDRQPVQISEIANAENISQKFLETILLSLRKTGFLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I + V++ E + C + DCP +CG+ ++ + ++
Sbjct: 62 GGYYLIKDPAEIQMASVMRVLEGPISMVPCVSLNFYEKCDDCPDEAACGVHKLMLQVRDS 121
Query: 118 FFDVLTQYSIECLVR 132
++ S+ L+
Sbjct: 122 NLEIYRNTSLADLIA 136
>gi|326386610|ref|ZP_08208232.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326208925|gb|EGD59720.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 164
Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + + A + Q+AE + + K++ L AG++ +VRG
Sbjct: 1 MRLSSMADYAVVAMSAAARRCGHARVSAQQLAEDTGLPVPTVQKLVSKLSAAGLLRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+ L RPA I++ D+V+A E +A+C + + DC + C + A
Sbjct: 61 AGGGLTLARPAAAISLADIVEAVEGPIAMAQCSDNSRHDCTIGQGCQVRPHWPAVDAALR 120
Query: 120 DVLTQYSIECLVR 132
L S+ L
Sbjct: 121 HALAGVSLSQLAA 133
>gi|255523578|ref|ZP_05390546.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
carboxidivorans P7]
gi|296186461|ref|ZP_06854864.1| Rrf2 family protein (putative transcriptional regulator)
[Clostridium carboxidivorans P7]
gi|255512835|gb|EET89107.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
carboxidivorans P7]
gi|296048908|gb|EFG88339.1| Rrf2 family protein (putative transcriptional regulator)
[Clostridium carboxidivorans P7]
Length = 167
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 39/157 (24%), Positives = 67/157 (42%), Gaps = 14/157 (8%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y I L+Y I +A ISE +L K+ L K+GI++++ G
Sbjct: 1 MKFSVGVEYAIHCLLYMVNSEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTS 109
+GG L R A+ IT ++V+A E S +C + D C +
Sbjct: 61 VKGGYALARNAEDITFWNIVEAVEGSEPFFQCAEIRQNNILLDKDNLPDTHTKCPCLIKV 120
Query: 110 VLRKALNAFFDVLTQYSIE---CLVRNRSSIKKIFNA 143
V+ +A + L+ ++ V N+ K++ NA
Sbjct: 121 VMLEAEDEMRKYLSNKTLAWLYDEVYNKKLPKEVKNA 157
>gi|229070249|ref|ZP_04203500.1| Transcriptional regulator [Bacillus cereus F65185]
gi|228712867|gb|EEL64791.1| Transcriptional regulator [Bacillus cereus F65185]
Length = 133
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + + + A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMFFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + EC K C + V+ A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC------LINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|87199748|ref|YP_497005.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87135429|gb|ABD26171.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
aromaticivorans DSM 12444]
Length = 144
Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T Y IR L + A R+ IAE I FL IL + + GIV + RGR
Sbjct: 2 LSQKTRYTIRALQHLADTWGQGAVRLDAIAEKQNIPRKFLTVILSEMAREGIVISHRGRD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L P I D+++ T S + C + H +C C L ++ + +
Sbjct: 62 GGYELALPPVDIRYGDIIRLTRGSLALVPCASRNAHEHCNNCLPEVDCRLRGLMLQLRDE 121
Query: 118 FFDVLTQYSIEC 129
+L + ++
Sbjct: 122 TAAILDRITLAD 133
>gi|110596721|ref|ZP_01385011.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
13031]
gi|110341408|gb|EAT59868.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
13031]
Length = 137
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y + D + ++A+ +S+ FL K +Q L +AGI +V+G
Sbjct: 2 LQVSRKFEYGLHAVTYLSTKGVDRVVTVKEMADDIGVSQEFLSKAMQSLKRAGIARSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +IT+ D+ A E + + C C + SC + N
Sbjct: 62 VKGGYSLGRKPGEITVADIAIAIEGAPHLMRC-GKKLASCEISSSCHHRDYMNSLQNKIQ 120
Query: 120 DVLTQYSIECLVRNR 134
D++ +I L+R
Sbjct: 121 DLMASTTIASLLRKE 135
>gi|226361387|ref|YP_002779165.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
gi|226239872|dbj|BAH50220.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
Length = 157
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 44/133 (33%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD G+RV+M A+ D IAE +S K++ L + GIV+ RG
Sbjct: 1 MQLTQFTDLGLRVVMRLAVAGDGERPGSRAIAEELSVSYTHAAKVITRLGELGIVDARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ + ++ + + E V +C CPL +C L S LR+A +AFF
Sbjct: 61 RAGGLAITELGRTASVGWLARRLEGDAEVVDC--DGAQPCPLRSNCLLRSALRRAQDAFF 118
Query: 120 DVLTQYSIECLVR 132
L ++E L R
Sbjct: 119 TSLDALTVEDLTR 131
>gi|86605142|ref|YP_473905.1| transcriptional regulator [Synechococcus sp. JA-3-3Ab]
gi|86553684|gb|ABC98642.1| putative transcriptional regulator [Synechococcus sp. JA-3-3Ab]
Length = 150
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT R Y IR L+ A+ + IAE I +L K+L L +AG+V + RG
Sbjct: 1 MRLTTRATYSIRALLDLAML-GQVASVRAIAERQQIPAPYLEKLLIELRQAGLVCSQRGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG RL R +I I ++ A ES AE + + ++ R+
Sbjct: 60 QGGYRLARAPRRIPISAILAAVGESLDPLPAERAGAQQEGSADGLDWVTEALWRRIAQRV 119
Query: 119 FDVLTQYSIECL 130
VL + ++E L
Sbjct: 120 EQVLEETTLEDL 131
>gi|256372224|ref|YP_003110048.1| BadM/Rrf2 family transcriptional regulator [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008808|gb|ACU54375.1| transcriptional regulator, BadM/Rrf2 family [Acidimicrobium
ferrooxidans DSM 10331]
Length = 273
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 2/129 (1%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++R DY +R +Y A ++ + +I A I F +IL L +AGI+ GR
Sbjct: 5 LSRRGDYAVRAALYLARQESNEAVGVREITAAMAIPPSFAGQILADLTRAGILGARPGRG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L IT+L +V+A E + C C C L + + A+ A D
Sbjct: 65 GGYWLQHDPKDITLLTIVEAAEGTLRAERCALGDGP-CRWDSVCPLHTFWQGAVRAVRDQ 123
Query: 122 LTQYSIECL 130
L ++ +
Sbjct: 124 LATVTLADV 132
>gi|134093901|ref|YP_001098976.1| hypothetical protein HEAR0652 [Herminiimonas arsenicoxydans]
gi|133737804|emb|CAL60849.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
Length = 151
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ +D G+RVLMY A P ++++A + L K++ L K G ++ VRG
Sbjct: 1 MKLTRFSDIGLRVLMYLAREARSPSVTVAEVAMQFDVPHNHLVKVVGALAKMGCIDAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L AD++ I DV++ E + +C +I C L C L + L+ + AF+
Sbjct: 61 RNGGIHLAVAADKLLIGDVLRMLEGDTEMVDC---ERIGCRLSSDCLLRNALKVGVEAFY 117
Query: 120 DVLTQYSIECLVRNR 134
D + Y++ +V
Sbjct: 118 DAMNLYTLADIVNGN 132
>gi|153004144|ref|YP_001378469.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152027717|gb|ABS25485.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
Fw109-5]
Length = 158
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ DYG+R ++Y A I + +IA + E FL KIL+ LV +V + RG
Sbjct: 5 LRISRKIDYGLRAMIYLASIPQESVVPFREIARQMDVPEDFLAKILKTLVDQSLVRSTRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +I+ LDV++A E + C C +C + SV R+
Sbjct: 65 PHGGYALARTPSEISFLDVIEAVEGPVALNVCLDGEDA-CGHSTACTMVSVWRQGQERML 123
Query: 120 DVLTQYSIECLV 131
DV Q + L
Sbjct: 124 DVYRQAKLNELA 135
>gi|228953101|ref|ZP_04115161.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|228806607|gb|EEM53166.1| Transcriptional regulator [Bacillus thuringiensis serovar kurstaki
str. T03a001]
Length = 133
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + EC K C + V+ A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC------LINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EKLRNQKIVDLAKK 128
>gi|239637568|ref|ZP_04678540.1| Rrf2 family protein [Staphylococcus warneri L37603]
gi|239596786|gb|EEQ79311.1| Rrf2 family protein [Staphylococcus warneri L37603]
Length = 140
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRLPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRS 135
DVL + +++ L +
Sbjct: 113 DVLDKTTLQYLAEYKE 128
>gi|16264868|ref|NP_437660.1| hypothetical protein SM_b20994 [Sinorhizobium meliloti 1021]
gi|307307992|ref|ZP_07587710.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
gi|15141007|emb|CAC49520.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306901396|gb|EFN32000.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
Length = 177
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ ++ A + I++IA + + FL I+ L AG + + +G
Sbjct: 28 LTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPG 87
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I + V++ + C + DC +C + + +A
Sbjct: 88 GGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVRDA 147
Query: 118 FFDVLTQYSIECLVRNRSS 136
D+L ++ +
Sbjct: 148 VADILDNMTLAQFAASERE 166
>gi|145219397|ref|YP_001130106.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
vibrioformis DSM 265]
gi|145205561|gb|ABP36604.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeovibrioides DSM 265]
Length = 137
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A+ + ++A S+ FL K +Q L +AGI + +G
Sbjct: 2 LQVSRKFEYGLHAVAYLAMKGSGEAVTVKEMARDIGFSQEFLAKAMQNLTRAGIASSAQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R +IT+ D+ A E + C + C + SC + + N+
Sbjct: 62 VKGGYMLARLPSEITVADIGLAIEGEPHMVRCIVNAD-SCEIYSSCRMRGYIIGLQNSIQ 120
Query: 120 DVLTQYSIECLVRNRS 135
+L ++ L++
Sbjct: 121 GLLASTTVATLLQRNE 136
>gi|319892680|ref|YP_004149555.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius
HKU10-03]
gi|317162376|gb|ADV05919.1| Iron-sulfur cluster regulator IscR [Staphylococcus pseudintermedius
HKU10-03]
gi|323464282|gb|ADX76435.1| transcriptional regulator, putative [Staphylococcus
pseudintermedius ED99]
Length = 139
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 70/141 (49%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMIALAKRHGTGCVSLKTIAEENGLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L A +IT D+++ E + E S G + + NA
Sbjct: 61 AKGGYELKMSATEITAGDIIRLLEGPLTIVERMESEPP--------GQQQLWLRMRNAVR 112
Query: 120 DVLTQYSIECLV--RNRSSIK 138
+VL Q +++ L +++ +++
Sbjct: 113 EVLDQTTLQSLADYQDKDALE 133
>gi|228921441|ref|ZP_04084764.1| Transcriptional regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228838214|gb|EEM83532.1| Transcriptional regulator [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
Length = 133
Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQHVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + EC K C + V+ A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC------LINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|332668756|ref|YP_004451763.1| BadM/Rrf2 family transcriptional regulator [Cellulomonas fimi ATCC
484]
gi|332337793|gb|AEE44376.1| transcriptional regulator, BadM/Rrf2 family [Cellulomonas fimi ATCC
484]
Length = 152
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DY +R A P +A I FL +IL L +AGIV +VRG
Sbjct: 1 MRVSAKADYAVRACAELAASPHGDPVPSEVLAAGQDIPVSFLERILGDLRRAGIVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL RPA +T+ +V++A + + + L V
Sbjct: 61 RSGGYRLARPAGDVTLAEVIRAVDGPLVTVRDERPPSLTYEGSAA-ALLDVWVALRTNVR 119
Query: 120 DVLTQYSIECLVR 132
VL ++ LV
Sbjct: 120 QVLDVVTLAHLVA 132
>gi|254521010|ref|ZP_05133065.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14]
gi|219718601|gb|EED37126.1| FeS assembly SUF system regulator [Stenotrophomonas sp. SKA14]
Length = 151
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RPA +I++ +VV+A E + EC H C + CG S R + +
Sbjct: 62 RGGYRLTRPALEISLFEVVEAMEGPLALTECSHDHHQ-CGMAPKCGARSSWRLINDVVSE 120
Query: 121 VLTQYSIECLV 131
L ++ ++
Sbjct: 121 ALRDVTLAQIL 131
>gi|119385536|ref|YP_916592.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119375303|gb|ABL70896.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 159
Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 3 LTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
++++T Y I+ LM A I +IA+ + FL I+ L AG V + RG
Sbjct: 13 ISQKTKYAIKALMALADEVAAGGNALTIEEIAQRSGAPKRFLEHIMLELRNAGYVGSRRG 72
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115
R GG L + +I+I ++++ + C + DC +C L + +
Sbjct: 73 RAGGYVLIKRPKEISIGELLRQVDGPIAPLPCLSRRSYQRCEDCTDEATCRLRRMFGQVF 132
Query: 116 NAFFDVLTQYSIECLVRN 133
++ ++ ++E LV
Sbjct: 133 WSYLLLIESLTLEDLVAE 150
>gi|148253999|ref|YP_001238584.1| BadM/Rrf2 family transcriptional regulator [Bradyrhizobium sp.
BTAi1]
gi|146406172|gb|ABQ34678.1| transcriptional regulator, BadM/Rrf2 family [Bradyrhizobium sp.
BTAi1]
Length = 158
Score = 99 bits (248), Expect = 8e-20, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 60/138 (43%), Gaps = 5/138 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG++ L++ A + + IAE IS+ FL IL+ L +AG+V +G
Sbjct: 2 LSAKGKYGLKALIHLASLEPGEQALSADIAETNNISKKFLDAILRELRQAGLVRAKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA I + ++ + C + DC +C + + + +A
Sbjct: 62 GGYALARPARSIKVGQAIRHLDGPLAPIACASRSAYRPCRDCRDPKACAVRLTMTQVRDA 121
Query: 118 FFDVLTQYSIECLVRNRS 135
VL Q ++ L
Sbjct: 122 ISGVLDQMTLYELAEQER 139
>gi|260426151|ref|ZP_05780130.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
gi|260420643|gb|EEX13894.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
Length = 162
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 3 LTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++T Y ++ LM A+ I ++++ + FL IL L KAG + RGR
Sbjct: 2 ITQKTKYALKSLMTLGALEKGAALTIEEVSQRTGAPKRFLEHILLDLRKAGYLGARRGRA 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L R ++++ ++++ + C + DC +C L V + +
Sbjct: 62 GGYFLIREPSKVSLGELLQQIDGPIAPLPCLSRRSYRRCDDCDDEEACQLRRVFGEIFWS 121
Query: 118 FFDVLTQYSIECLVRNR 134
+ ++ +++ L+R+
Sbjct: 122 YLLLIESLTLQDLLRDP 138
>gi|284800916|ref|YP_003412781.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578]
gi|284994102|ref|YP_003415870.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923]
gi|284056478|gb|ADB67419.1| hypothetical protein LM5578_0664 [Listeria monocytogenes 08-5578]
gi|284059569|gb|ADB70508.1| hypothetical protein LM5923_0663 [Listeria monocytogenes 08-5923]
Length = 138
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA +E+V G
Sbjct: 1 MKFSKATNYALHTIVYLANLSPEKSVGVKELATKQNVSPTYLSKVLTMLVKASFIESVTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L PA I+ LDV++A E C + + C + V+ KA
Sbjct: 61 VNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSE--SQPHCLIGEVMNKAEQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ ++ +V
Sbjct: 119 DYLSKQTVGSIV 130
>gi|146276848|ref|YP_001167007.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17025]
gi|145555089|gb|ABP69702.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17025]
Length = 189
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+T++ Y ++ LM A RI IA + FL IL + AG + ++RG
Sbjct: 25 ITQKMKYALKALMVLAEEHSGEQRALRIEDIAARSETPKRFLEHILLDIRNAGYIASIRG 84
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115
R GG L + QI + D+++ + C + DC SC + V +
Sbjct: 85 RSGGYLLIKEPAQIPLSDLLRMIDGPIAPLPCLSRRSYQRCDDCTDETSCRIRKVFAEIF 144
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
++ ++ ++ LVR ++ ++I A
Sbjct: 145 WSYLLLIESLTLADLVRTPAASEQILAA 172
>gi|256377869|ref|YP_003101529.1| BadM/Rrf2 family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255922172|gb|ACU37683.1| transcriptional regulator, BadM/Rrf2 family [Actinosynnema mirum
DSM 43827]
Length = 141
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL+K TD +RVLM A D + +A + + + K++Q L K G+V T RGR
Sbjct: 1 MHLSKATDIALRVLM-LAAAKDAQLTVDDLATSMNVPRNHVAKVVQRLQKEGLVTTARGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV + A ++ VV+ E V +C + CPL +C L LR A AFF
Sbjct: 60 NGGVSVPPGARGVSAGHVVRRFEGEDEVVDC---EQGPCPLHRACLLRGALRTAREAFFA 116
Query: 121 VLTQYSIECLVR 132
L + L+
Sbjct: 117 SLDTVLLRDLIA 128
>gi|220909499|ref|YP_002484810.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
7425]
gi|219866110|gb|ACL46449.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7425]
Length = 145
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ + P + IA+ + +L K+L + +AG+V ++RG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPNYGPTSVQAIAQRQDLPAPYLEKLLIAMRRAGLVHSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R QI++ +++A ES G ++ ++
Sbjct: 61 AQGGYQLARSPAQISLAQILEAVGESIEPL-----FAQRAAQSGDWLTLTLWKRLQQKLR 115
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L ++E L + S +
Sbjct: 116 ESLYTITLEDLYYDARSWQA 135
>gi|150376652|ref|YP_001313248.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150031199|gb|ABR63315.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
WSM419]
Length = 179
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ ++ A + I++IA + + FL I+ L AG + + +G
Sbjct: 27 LTKKGKYGLKAMVDLAQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPG 86
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I + V++ + C + DC +C + + +A
Sbjct: 87 GGYALARPASEIRVGQVIRTLDGPLAPIRCASRTAYEMCDDCSDPENCHVRRSMIVVRDA 146
Query: 118 FFDVLTQYSIECLVRNRSS 136
++L ++ +
Sbjct: 147 VANILDNMTLAQFAASEKD 165
>gi|152983079|ref|YP_001352722.1| transcriptional regulator [Janthinobacterium sp. Marseille]
gi|151283156|gb|ABR91566.1| transcriptional regulator [Janthinobacterium sp. Marseille]
Length = 185
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ +YG+ L++ + + +AE + FL K+ LVKAG+V + G
Sbjct: 4 ISSGVEYGLHCLLFLTRSSAAVEEASVRDLAELQGVPHDFLAKLFTKLVKAGLVVSTEGV 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111
+GGVRL R ++IT+ DV+ A + + +C F S+ G C + +V+
Sbjct: 64 KGGVRLARLPERITVHDVIVAIDGDKSLFDCREIRGRCAVFDSNAPAWATRGVCSIDAVM 123
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
+ A A L Q+++ L +
Sbjct: 124 QLAEKAMRAELKQHTLADLAQR 145
>gi|284039030|ref|YP_003388960.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
74]
gi|283818323|gb|ADB40161.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
74]
Length = 142
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+ Y I+ L + P I+ IA+ I FL IL + GI+++ +G+
Sbjct: 2 ISKKAKYAIKALKALTESYGSGPILITDIAKRENIPHKFLEGILLEMRNHGILQSQKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L ++I + V++ + C + + DC +C + ++ + +A
Sbjct: 62 GGYLLRVDPERINLAQVIRIIDGPIAPTPCVSLNFYVRCDDCADEETCSIRPIMLRVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
V + +I+ LV
Sbjct: 122 NLAVYEKTTIQMLVDKNKQ 140
>gi|217970313|ref|YP_002355547.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thauera sp. MZ1T]
gi|217507640|gb|ACK54651.1| transcriptional regulator, BadM/Rrf2 family [Thauera sp. MZ1T]
Length = 171
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K TDYG +L + A H D + + +AEA + + K+L+ L + +V + RG
Sbjct: 2 LRISKLTDYGTLILTHMAGHPDRLHSAAGLAEALGLGLPTVSKVLKTLGRHELVSSQRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP D+IT+ DV+ A EE F + EC +S + C + C + +
Sbjct: 62 HGGYALARPPDRITVADVIDALEEQAFGLTECSSSSGV-CAIESDCRIRENWMRINTVVR 120
Query: 120 DVLTQYSIECLVR 132
L +I +V
Sbjct: 121 QALQAVNIADMVH 133
>gi|157964665|ref|YP_001499489.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
massiliae MTU5]
gi|157844441|gb|ABV84942.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
massiliae MTU5]
Length = 139
Score = 99 bits (248), Expect = 9e-20, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A + P +++++ IS +L +I L A +V+ +RG
Sbjct: 1 MMLTTKGRYAVMAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKNADLVKAIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
+GG L ++I I D++ A E+F + C+ C P C + +
Sbjct: 61 SKGGYILIGNLEEIKIADIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHI 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
D SI+ + + +I
Sbjct: 121 RDYFENISIKDALNSNLNI 139
>gi|305664587|ref|YP_003860874.1| BadM/Rrf2 family transcriptional regulator [Maribacter sp.
HTCC2170]
gi|88708604|gb|EAR00840.1| transcriptional regulator, BadM/Rrf2 family protein [Maribacter sp.
HTCC2170]
Length = 136
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YG++ L + A + P +I++IA IS+ FL IL L K GI+ + +G+
Sbjct: 2 LSKKTKYGLKALTFLASQENRQPVQIAEIARNENISQKFLESILLSLRKTGILGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + I + DV++ E + C + DCP +C + ++ + ++
Sbjct: 62 GGYYLIKEPKDILMTDVMRILEGPIAMVPCVSLNFYERCEDCPDEKTCSVHKLMLQVRDS 121
Query: 118 FFDVLTQYSIECLVR 132
++ ++ L++
Sbjct: 122 ALEIYRNNTLADLIK 136
>gi|299139059|ref|ZP_07032235.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
MP5ACTX8]
gi|298598739|gb|EFI54901.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
MP5ACTX8]
Length = 152
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 66/133 (49%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ LTK+ DYG+ L Y A + + IAEA I L KILQ L K+G++ + G
Sbjct: 2 LRLTKKADYGLMALKYLAEQSTNGAQSAKDIAEAYHIPPQLLAKILQTLAKSGLLVSHAG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I+ +V++A + F+ C C L G+C + LRK ++
Sbjct: 62 TNGGYALARSAHDISAFEVIRAIDGPLFITSCIT-IHGTCDLHGTCTIKEPLRKVNDSIK 120
Query: 120 DVLTQYSIECLVR 132
++L+ + L+
Sbjct: 121 ELLSGIRVSDLIE 133
>gi|170759452|ref|YP_001788696.1| putative transcriptional regulator [Clostridium botulinum A3 str.
Loch Maree]
gi|169406441|gb|ACA54852.1| putative transcriptional regulator [Clostridium botulinum A3 str.
Loch Maree]
Length = 133
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A+ + + ++AE +S +L KIL LVK G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAMDTPNKLVGVQELAEKQKVSPTYLSKILTKLVKEGMINSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + I+ LD++ A E + +C +C + V+ A
Sbjct: 61 ANGGYSLSQNWEDISFLDIIHAIEGKSSLFDCCLESHSEC------VIKKVMLSAEGKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I LV+
Sbjct: 115 EELKNQKISDLVKK 128
>gi|319645572|ref|ZP_07999804.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2]
gi|317392458|gb|EFV73253.1| hypothetical protein HMPREF1012_00837 [Bacillus sp. BT1B_CT2]
Length = 141
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L KAG++E+ G
Sbjct: 9 MKYSKATNYALHTMLFLAAGAPNTFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESASG 68
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R + I+ LD++ A E + + +C +H C + V+ A +
Sbjct: 69 ANGGYRLKRNWEDISFLDIIHAIEGTASLFDCNLNH------GSECVIQKVMVSAEDEME 122
Query: 120 DVLTQYSIECLVRN 133
+ L Q I L +
Sbjct: 123 NYLRQQKISDLAKK 136
>gi|57237713|ref|YP_178961.1| RrF2 family protein, putative [Campylobacter jejuni RM1221]
gi|86150257|ref|ZP_01068484.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|86152104|ref|ZP_01070316.1| rrf2 family protein (putative transcriptional regulator)
[Campylobacter jejuni subsp. jejuni 260.94]
gi|86153564|ref|ZP_01071768.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|88597557|ref|ZP_01100791.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|121612186|ref|YP_001000559.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
81-176]
gi|148926572|ref|ZP_01810254.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|153952143|ref|YP_001398128.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei
269.97]
gi|157415141|ref|YP_001482397.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni
81116]
gi|167005492|ref|ZP_02271250.1| hypothetical protein Cjejjejuni_04615 [Campylobacter jejuni subsp.
jejuni 81-176]
gi|205356370|ref|ZP_03223135.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|218562504|ref|YP_002344283.1| putative transcriptional regulator [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|283954445|ref|ZP_06371965.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni
414]
gi|57166517|gb|AAW35296.1| RrF2 family protein, putative [Campylobacter jejuni RM1221]
gi|85839373|gb|EAQ56635.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
CF93-6]
gi|85840889|gb|EAQ58139.1| rrf2 family protein (putative transcriptional regulator)
[Campylobacter jejuni subsp. jejuni 260.94]
gi|85843290|gb|EAQ60501.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
HB93-13]
gi|87249498|gb|EAQ72458.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
81-176]
gi|88190149|gb|EAQ94124.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
84-25]
gi|112360210|emb|CAL35005.1| putative transcriptional regulator [Campylobacter jejuni subsp.
jejuni NCTC 11168]
gi|145845266|gb|EDK22360.1| hypothetical protein Cj8486_0896c [Campylobacter jejuni subsp.
jejuni CG8486]
gi|152939589|gb|ABS44330.1| putative RrF2 family protein [Campylobacter jejuni subsp. doylei
269.97]
gi|157386105|gb|ABV52420.1| hypothetical protein C8J_0821 [Campylobacter jejuni subsp. jejuni
81116]
gi|205345755|gb|EDZ32393.1| hypothetical protein Cj8421_0892 [Campylobacter jejuni subsp.
jejuni CG8421]
gi|283794062|gb|EFC32811.1| putative RrF2 family protein [Campylobacter jejuni subsp. jejuni
414]
gi|284926118|gb|ADC28470.1| RrF2 family protein, putative [Campylobacter jejuni subsp. jejuni
IA3902]
gi|307747784|gb|ADN91054.1| Rrf2 family protein (Putative transcriptional regulator)
[Campylobacter jejuni subsp. jejuni M1]
gi|315058324|gb|ADT72653.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp.
jejuni S3]
gi|315926477|gb|EFV05859.1| Rrf2 family protein, putative [Campylobacter jejuni subsp. jejuni
DFVF1099]
gi|315929508|gb|EFV08702.1| Rrf2 family protein (transcriptional regulator) [Campylobacter
jejuni subsp. jejuni 305]
gi|315932634|gb|EFV11565.1| Rrf2 family transcriptional regulator [Campylobacter jejuni subsp.
jejuni 327]
Length = 136
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G
Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + Q TI ++V A ++ V EC + +C L +L N
Sbjct: 60 KGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPN-NKEENCTLMPMLVNLQNKVD 118
Query: 120 DVLTQYSIECLVRNR 134
+ L ++E +++N
Sbjct: 119 EFLDSITLEDIMKNN 133
>gi|325925546|ref|ZP_08186934.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
91-118]
gi|325544050|gb|EGD15445.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
91-118]
Length = 172
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 22 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 81
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC H C + CG+ S R + D
Sbjct: 82 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHSQ-CGIAQRCGVRSNWRLINDVVGD 140
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 141 ALRRVTLAQMLQ 152
>gi|220916472|ref|YP_002491776.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219954326|gb|ACL64710.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 159
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG
Sbjct: 5 LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I+ LDV+++ E + C C +C + SV R
Sbjct: 65 PHGGYALARMPADISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERML 123
Query: 120 DVLTQYSIECLV 131
DV Q + L
Sbjct: 124 DVYRQAKLSELA 135
>gi|239977954|ref|ZP_04700478.1| transcriptional regulator [Streptomyces albus J1074]
Length = 144
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG
Sbjct: 1 MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPAD+IT+LDV +A + + + P G+ GL V R+ +A
Sbjct: 61 EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 119
Query: 121 VLTQYSIECLVRNR 134
+L ++ L+ +
Sbjct: 120 ILQGVTLTSLLADE 133
>gi|78189454|ref|YP_379792.1| hypothetical protein Cag_1493 [Chlorobium chlorochromatii CaD3]
gi|78171653|gb|ABB28749.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
chlorochromatii CaD3]
Length = 143
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK+ DY IR L+ A IAEA I FL +LQ L+ +V + G
Sbjct: 1 MKILTKKADYAIRALLMLAAKEGGFMSAKAIAEAQDIPYQFLRSLLQELMHHHLVASKEG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG R+ D I++ +++ + V+EC ++ C SC L + +
Sbjct: 61 AHGGFRIETNPDNISVKQLIEIFQGEVQVSECMFRKQV-CRNRSSCVLRHEIMRIEEVVS 119
Query: 120 DVLTQYSIECLVRN 133
Q +I L+R
Sbjct: 120 HEFGQLTIGSLLRK 133
>gi|228939890|ref|ZP_04102467.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228972780|ref|ZP_04133379.1| Transcriptional regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228979364|ref|ZP_04139700.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
gi|228780368|gb|EEM28599.1| Transcriptional regulator [Bacillus thuringiensis Bt407]
gi|228786995|gb|EEM34975.1| Transcriptional regulator [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228819821|gb|EEM65869.1| Transcriptional regulator [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326940538|gb|AEA16434.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 133
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + +C K C + + A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPGC------LINEAMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|188990792|ref|YP_001902802.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas
campestris pv. campestris str. B100]
gi|167732552|emb|CAP50746.1| transcriptional regulator of the sufRBCDS cluster [Xanthomonas
campestris pv. campestris]
Length = 152
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC H C + CG+ S R + D
Sbjct: 62 HGGYRLARAASAITLVEIVEAMEGPLAITECSQDHSQ-CGIAHQCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ ++
Sbjct: 121 ALRRVTLAQMLH 132
>gi|269926805|ref|YP_003323428.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum
ATCC BAA-798]
gi|269790465|gb|ACZ42606.1| transcriptional regulator, BadM/Rrf2 family [Thermobaculum terrenum
ATCC BAA-798]
Length = 178
Score = 99 bits (248), Expect = 1e-19, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ R +YG+R++M A + P ++++AE + +L +++ L + G+V + RG +
Sbjct: 9 FSIRAEYGVRLMMMLAREYGKGPLSLARVAEEELLPLPYLEQLIANLRRDGLVVSHRGAK 68
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
GG L +P ++IT+ +++++ E C + + C C + + +A
Sbjct: 69 GGYELAKPPEEITMGEIIRSLEGPIVPMVCATEDESEITCYKGDYCSAQILWSRVRDAVR 128
Query: 120 DVLTQYSIECLVR 132
VL + +
Sbjct: 129 QVLDSTKLSEIAN 141
>gi|302035787|ref|YP_003796109.1| putative HTH-type transcriptional regulator [Candidatus Nitrospira
defluvii]
gi|300603851|emb|CBK40183.1| putative HTH-type transcriptional regulator, rrf2 family
[Candidatus Nitrospira defluvii]
Length = 150
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 64/142 (45%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R YGI + A+H+ + P IA+ I FL ++L + KAG+V + RG
Sbjct: 1 MKVSLRATYGIIAAVDLALHHAEQPVCAKSIAKRQAIPARFLEQVLHAMKKAGVVASQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
+GG L R ++++ D++ A E K L + + A
Sbjct: 61 AQGGYVLSRKPSELSVADILDALEGPLLTTNGEGGPKHSSSRGAKQEALLAHIWDRVKRA 120
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
VL++ ++E L + + S+ +
Sbjct: 121 ELSVLSEVTVEELAKRQRSLDE 142
>gi|193216387|ref|YP_001997586.1| BadM/Rrf2 family transcriptional regulator [Chloroherpeton
thalassium ATCC 35110]
gi|193089864|gb|ACF15139.1| transcriptional regulator, BadM/Rrf2 family [Chloroherpeton
thalassium ATCC 35110]
Length = 132
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ +TK+ +YG+ + Y A+ N +I+E I L K LQ L KAG++ +V+G
Sbjct: 2 LKVTKKFEYGLIAVRYIAMTSNGEVATAKEISERMGIPYELLAKTLQRLTKAGVITSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L RP QIT+ ++ +A E + EC A + C L +C + L F
Sbjct: 62 VKGGYKLSRPPKQITLGEIAEAIEGPLNLTECQA-TQDTCHLYSTCAIKKSLVHIQQRFQ 120
Query: 120 DVLTQYSIECLV 131
+ Q +++ ++
Sbjct: 121 HIFDQATVDEIL 132
>gi|83590920|ref|YP_430929.1| BadM/Rrf2 family transcriptional regulator [Moorella thermoacetica
ATCC 39073]
gi|83573834|gb|ABC20386.1| transcriptional regulator, BadM/Rrf2 family [Moorella thermoacetica
ATCC 39073]
Length = 136
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/133 (33%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R ++Y A + IA I FL KI++ LV+AGIV++ RG
Sbjct: 1 MRLNQATDYAFRAVLYLAKLEPGTIAEAQMIASREDIPMRFLLKIMRSLVQAGIVQSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L RPA +IT+LDVV+A E V C + C + L +A
Sbjct: 61 VSGGFALARPAREITLLDVVEAVEGPVSVNRCLLDPEYCNKHGAPCCPVHRALGAVQDAL 120
Query: 119 FDVLTQYSIECLV 131
L +Y+ L
Sbjct: 121 RRELKRYNFAELA 133
>gi|328955220|ref|YP_004372553.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
glomerans PW2]
gi|328455544|gb|AEB06738.1| transcriptional regulator, BadM/Rrf2 family [Coriobacterium
glomerans PW2]
Length = 164
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + +R L+ A H + QIA+ ISE +L IL LV+ G++ RG
Sbjct: 1 MLVSTKGRHALRALVDLAEHQAAGYIPLKQIADRQSISEKYLESILSSLVQHGLLLGRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL R A + T++ V+ TE S C C C ++ +
Sbjct: 61 RGGGYRLARNARRCTVMSVLTLTEGSISAVPCLEGRSTGCHRASRCRTLAMWEGLDSLVR 120
Query: 120 DVLTQYSIECLVRNRS 135
L +I L+R+
Sbjct: 121 TYLEGVTIADLMRSPK 136
>gi|256392947|ref|YP_003114511.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Catenulispora acidiphila DSM 44928]
gi|256359173|gb|ACU72670.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
acidiphila DSM 44928]
Length = 151
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY +RV++ A H + S + + + F+ IL L +A +V + RG
Sbjct: 1 MHISAKADYAVRVMLELAAHGPGVVKASVVIDHQDLPRKFIEAILVELRRADLVRSHRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA I+I VV+A + H+ + L A A
Sbjct: 61 DGGYTLARPAAAISIGSVVRAVDGPLAEVRGLRPHETEYAGAAE-HLADCWVAARAALRK 119
Query: 121 VLTQYSIECLVRNR 134
VL + S+ ++ R
Sbjct: 120 VLDETSLAQVLDGR 133
>gi|298290810|ref|YP_003692749.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Starkeya novella DSM 506]
gi|296927321|gb|ADH88130.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
506]
Length = 149
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT + YG++ ++Y A +IA A I + FL IL L AG++ + +G
Sbjct: 2 LTNKGKYGLKAMLYLARIEPGSSAMGQEIATANNIPKKFLDAILLELRNAGMLRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I I +++ + C + DC + +C + + K +A
Sbjct: 62 GGYALAKTPREIRIGHIIRTLDGPLAPISCASKSAYVPCQDCEDLATCSVRITMSKVRDA 121
Query: 118 FFDVLTQYSIECLV 131
++L S++ ++
Sbjct: 122 MSEILDGMSLQDMI 135
>gi|251771117|gb|EES51701.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
ferrodiazotrophum]
Length = 141
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 8/131 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++R DYGIR ++ A+ + ++IAE I + FL +I+ LVK G VE+ RG +
Sbjct: 4 KLSQRVDYGIRAMVEIAVAGAHGMTGAKIAERSKIPKPFLKQIMATLVKNGFVESSRGPQ 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
G RL R I + +V+A E + + + + L ++ K A +
Sbjct: 64 GKYRLLRDPADIRLSGIVRALEGTVSLYDPSSPPGP--------ALQTLFDKLSQAVNEE 115
Query: 122 LTQYSIECLVR 132
L + ++ +
Sbjct: 116 LEKVTLAECIE 126
>gi|172057146|ref|YP_001813606.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171989667|gb|ACB60589.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 146
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY IR L++ + D RI ++A+ IS+ L K++ L + G++ +VRGR
Sbjct: 1 MRMTRYTDYAIRSLLFAGANADRLVRIQEVADCYDISKNHLMKVVYRLGQNGLIHSVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL P D+I I DVV+ E + + L + A+ AF
Sbjct: 61 GGGFRLASPPDEIYIGDVVQLFEPTTHFLDPLEGTSELPSLDPA---RDAFDDAIAAFHQ 117
Query: 121 VLTQYSIECLVRN-RSSIKKIF 141
VL Y+I L+ S+ ++I
Sbjct: 118 VLNSYTINDLLHPTNSTHRQIL 139
>gi|313634571|gb|EFS01056.1| putative transcriptional regulator [Listeria seeligeri FSL N1-067]
Length = 138
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + + ++A +S +L K+L LVKA VE++ G
Sbjct: 1 MKYSKATNYALHTMVYLANLSAEKSVGVKELASKQNVSPTYLSKVLTMLVKADFVESITG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L +PA I+ LDV++A E C + + C + V+ A+
Sbjct: 61 VNGGYKLAKPATNISFLDVIQAIEGKTAFFHCDPKNHAE--TKSHCLIGEVMGNAVQQME 118
Query: 120 DVLTQYSIECLV 131
D L++ +I +V
Sbjct: 119 DYLSKQTIGSIV 130
>gi|228959004|ref|ZP_04120705.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229046468|ref|ZP_04192123.1| Transcriptional regulator [Bacillus cereus AH676]
gi|229145347|ref|ZP_04273736.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
gi|229190868|ref|ZP_04317859.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
gi|296503312|ref|YP_003665012.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|228592536|gb|EEK50364.1| Transcriptional regulator [Bacillus cereus ATCC 10876]
gi|228638186|gb|EEK94627.1| Transcriptional regulator [Bacillus cereus BDRD-ST24]
gi|228724830|gb|EEL76132.1| Transcriptional regulator [Bacillus cereus AH676]
gi|228800665|gb|EEM47581.1| Transcriptional regulator [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|296324364|gb|ADH07292.1| RRF2 family protein [Bacillus thuringiensis BMB171]
Length = 133
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTILFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + EC K C + V+ A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC------LINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|21232196|ref|NP_638113.1| hypothetical protein XCC2765 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66767675|ref|YP_242437.1| hypothetical protein XC_1348 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21113952|gb|AAM42037.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66573007|gb|AAY48417.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 152
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARSDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC H C + CG+ S R + D
Sbjct: 62 HGGYRLARAASAITLVEIVEAMEGPLAITECSQDHSQ-CGIAHQCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ ++
Sbjct: 121 ALRRVTLAQMLH 132
>gi|163752875|ref|ZP_02159999.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia
algicida OT-1]
gi|161326607|gb|EDP97932.1| Transcriptional Regulator, BadM/Rrf2 family protein [Kordia
algicida OT-1]
Length = 137
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YG++ L Y A D P IS+IA IS+ FL IL L G++ + +G+
Sbjct: 2 LSKKTKYGLKALTYIARKGDEAPVLISEIATEEKISKKFLEAILLQLKNNGLLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + D+I I +++ E + C + DCP CGL ++ + +
Sbjct: 62 GGYYLIKTPDEIKIASLIRILEGPIAMLPCVSLNFYEKCDDCPDETKCGLHQLMLEVRDN 121
Query: 118 FFDVLTQYSIECL 130
VL ++E L
Sbjct: 122 MLAVLDNKTLEDL 134
>gi|307152699|ref|YP_003888083.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
7822]
gi|306982927|gb|ADN14808.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7822]
Length = 147
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ P + IA + +L K+L + +AG+V++VRG
Sbjct: 1 MLLTTRGHYSVKALLDLSLQPGYGPTSVKAIATRQDLPAPYLEKLLIEMRRAGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L QI++ +++A E+ + S+ ++
Sbjct: 61 CLGGYQLAYQPSQISLGQILEAVGETIQP---LPGYNPVAQQAEDWVTFSLWKRLHFKLK 117
Query: 120 DVLTQYSIECL 130
D L ++ L
Sbjct: 118 DALHSITLADL 128
>gi|41408581|ref|NP_961417.1| hypothetical protein MAP2483c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|41396939|gb|AAS04800.1| hypothetical protein MAP_2483c [Mycobacterium avium subsp.
paratuberculosis K-10]
Length = 161
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RP I+I DV++ + + + LT V R +
Sbjct: 61 REGGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL + ++ +
Sbjct: 120 SVLEETTLADVA 131
>gi|159044182|ref|YP_001532976.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157911942|gb|ABV93375.1| HTH-type transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length = 162
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + + A D +S+IAE IS +L ++ L +A +VE+VRG
Sbjct: 1 MKLSTKGRYAMVAMADLAEAPADKLVTLSEIAERQSISLTYLEQLFVKLRRAKLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL R D I + DV++A +E+ + +
Sbjct: 61 PGGGYRLARAPDAIRVSDVLQAVDETVSAMHTGAGASGAKSGSRAQSMTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V N+
Sbjct: 121 YVFLHQTRLSDVVTNQ 136
>gi|302873942|ref|YP_003842575.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
gi|307689807|ref|ZP_07632253.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
cellulovorans 743B]
gi|302576799|gb|ADL50811.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
Length = 167
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y I L+Y + I +A ISE +L K+ L K+GIV+++ G
Sbjct: 1 MKFSVGVEYAIHCLLYMVNSEEGTSVGIRDLATFQGISETYLSKVYAKLSKSGIVKSIPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTS 109
+GG L R A++IT DVV+A E S +C + D C +
Sbjct: 61 VKGGYALARSAEEITFWDVVEAVEGSEPFFQCAEIRQKNILLDKDNLPDTHTKCPCLIKV 120
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A + L+ ++
Sbjct: 121 VMLEAEDEMRKYLSNKTLA 139
>gi|332975848|gb|EGK12726.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437]
Length = 210
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/148 (27%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K TDY + L++ A I +++ + +SE +L KI+ L + GIV V G
Sbjct: 52 QFSKSTDYALHALIHLAHSEHRRNIGIKELSASLGVSESYLSKIMSKLRRDGIVRAVPGV 111
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF---------------ASHKIDCPLVGSC 105
GG L RPA QIT L+V+ E + EC A DC C
Sbjct: 112 NGGYELARPAGQITFLEVIHVIEGRQSLFECSTLNSKQHRLLAEERAADRDRDCQGNSEC 171
Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ V+ A + L +++I+ ++
Sbjct: 172 LVKKVMDGAEQHLYQYLREHTIQSVLDE 199
>gi|194335942|ref|YP_002017736.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
phaeoclathratiforme BU-1]
gi|194308419|gb|ACF43119.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
phaeoclathratiforme BU-1]
Length = 137
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A + ++A+ S+ FL K +Q L +AGI +V+G
Sbjct: 2 LQVSRKFEYGLHAVTYLATKGVGRVVTVKEMADEIGFSQEFLSKAMQSLKRAGIATSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + D+IT+ D+ A E + C C + SC L
Sbjct: 62 VKGGYTLGKTMDEITVADIAIAIEGKPHLVRC-GVTPDSCEIFSSCHHRGYLNNLQYKIQ 120
Query: 120 DVLTQYSIECLVRN 133
++LT ++ L+
Sbjct: 121 ELLTATTLHSLLDE 134
>gi|190573183|ref|YP_001971028.1| putative transcriptional regulator [Stenotrophomonas maltophilia
K279a]
gi|190011105|emb|CAQ44714.1| putative transcriptional regulator [Stenotrophomonas maltophilia
K279a]
Length = 151
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RPA +I++ +VV+A E + EC H C + CG S R + +
Sbjct: 62 RGGYRLTRPAIEISLFEVVEAMEGPLALTECSHDHHQ-CGMAPKCGARSSWRLINDVVSE 120
Query: 121 VLTQYSIECLV 131
L ++ ++
Sbjct: 121 ALRDVTLAQIL 131
>gi|150395418|ref|YP_001325885.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150026933|gb|ABR59050.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
WSM419]
Length = 153
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I++IA+ I + FL IL L AG++ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLAPGETAFITEIAQRNNIPKKFLDTILLELRNAGVLRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I I V++ + C + DC +C + + +A
Sbjct: 62 GGYSLSRPASEIRIGHVIRTLDGPLAPIRCASRTAYEICEDCSDPETCRVRISMTSVRDA 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++
Sbjct: 122 MSSILDSMTLSEFAA 136
>gi|86159005|ref|YP_465790.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85775516|gb|ABC82353.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 159
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ DYG+R ++Y A I D +IA + E FL KIL+ LV G+V + RG
Sbjct: 5 LRISRKIDYGLRAMIYLASIPQDSVVPFREIARQMDVPEDFLAKILKTLVDTGLVRSTRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I+ LDV+++ E + C C +C + SV R
Sbjct: 65 PHGGYALARMPVDISFLDVIESVEGPVALNVCLDGEDA-CGHSTACTMVSVWRLGQERML 123
Query: 120 DVLTQYSIECLV 131
DV Q + L
Sbjct: 124 DVYRQAKLSELA 135
>gi|331003016|ref|ZP_08326528.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413060|gb|EGG92435.1| hypothetical protein HMPREF0491_01390 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 139
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y + V++ + +D + IA+ +SE +L I++ LVK ++ +RG
Sbjct: 1 MKISTKGRYSLLVMIDLTENQSDEFIPLHDIAKRQELSEKYLESIIKLLVKNKLLVGLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + IT+ +V++ EE+ + + K
Sbjct: 61 KGGGYKLTKSPSDITVGEVLRIAEENIMM---DDEDTEGMHRTSEYRTIDMWGKLSKMII 117
Query: 120 DVLTQYSIECLV 131
+ SI L+
Sbjct: 118 EYFDSISIADLI 129
>gi|75763854|ref|ZP_00743502.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|218897792|ref|YP_002446203.1| rrf2 family protein [Bacillus cereus G9842]
gi|228901306|ref|ZP_04065501.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
gi|228965709|ref|ZP_04126789.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
str. T04001]
gi|74488661|gb|EAO52229.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|218543991|gb|ACK96385.1| rrf2 family protein [Bacillus cereus G9842]
gi|228793968|gb|EEM41491.1| Transcriptional regulator [Bacillus thuringiensis serovar sotto
str. T04001]
gi|228858335|gb|EEN02800.1| Transcriptional regulator [Bacillus thuringiensis IBL 4222]
Length = 133
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVYQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + +C K C + + A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFDCCLHDKPGC------LINEAMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|126651583|ref|ZP_01723786.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905]
gi|126591532|gb|EAZ85638.1| hypothetical protein BB14905_13260 [Bacillus sp. B14905]
Length = 166
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + + I ++E +SE +L K+L L KAGIV +V G
Sbjct: 1 MKYSVMVEYALHSLVYLIDVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDC----PLVGSCGLTS 109
+GG +L + + I+ DVVKA E + C FA+ +C +C +
Sbjct: 61 VKGGYKLSKKPEDISFWDVVKAVEGESPIFHCKNIKANFANQTENCDSCASGTSNCTINI 120
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A + L +I
Sbjct: 121 VMLEAEEQMRNYLRGKTIA 139
>gi|633731|gb|AAA61511.1| ORF3; 14-nt overlap with flhA [Campylobacter jejuni subsp. jejuni
81-176]
Length = 136
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G
Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ G L + Q TI ++V A ++ V EC + +C L +L N
Sbjct: 60 KVGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPN-NKEENCTLMPMLVNLQNKVD 118
Query: 120 DVLTQYSIECLVRNR 134
+ L ++E +++N
Sbjct: 119 EFLDSITLEDIMKNN 133
>gi|242242899|ref|ZP_04797344.1| transcriptional regulator [Staphylococcus epidermidis W23144]
gi|242233674|gb|EES35986.1| transcriptional regulator [Staphylococcus epidermidis W23144]
gi|319400953|gb|EFV89172.1| rrf2 family protein [Staphylococcus epidermidis FRI909]
Length = 140
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L P+++IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL +++ L + + + +
Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133
>gi|330990683|ref|ZP_08314639.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329762123|gb|EGG78611.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 135
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT RTD RVL++ A H +S I+E +S L K+++ L GI+ R
Sbjct: 1 MRLTLRTDLAFRVLIHLARHARAQDRVTVSHISERHNLSHNHLVKVVKELCHHGILVGTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNA 117
GR GG+RL R I I +V+ E V C + C L SC L ++R+A +A
Sbjct: 61 GRNGGIRLARHPKDINIGHIVRLMETEGEVMTGCAPLYGRPCVLADSCRLRHLIRQATDA 120
Query: 118 FFDVLTQYSIECLV 131
F +L S++ L+
Sbjct: 121 FMVILDGMSVQDLL 134
>gi|27468226|ref|NP_764863.1| hypothetical protein SE1308 [Staphylococcus epidermidis ATCC 12228]
gi|57867116|ref|YP_188765.1| Rrf2 family protein [Staphylococcus epidermidis RP62A]
gi|251811031|ref|ZP_04825504.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|282875949|ref|ZP_06284816.1| Rrf2 family protein [Staphylococcus epidermidis SK135]
gi|293366417|ref|ZP_06613095.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
M23864:W2(grey)]
gi|27315772|gb|AAO04907.1|AE016748_141 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|57637774|gb|AAW54562.1| Rrf2 family protein [Staphylococcus epidermidis RP62A]
gi|251805449|gb|EES58106.1| transcriptional regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|281294974|gb|EFA87501.1| Rrf2 family protein [Staphylococcus epidermidis SK135]
gi|291319451|gb|EFE59819.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329724645|gb|EGG61151.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
VCU144]
gi|329735208|gb|EGG71500.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
VCU045]
Length = 140
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L P+++IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPSEEITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL +++ L + + + +
Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133
>gi|149277390|ref|ZP_01883531.1| transcriptional regulator, rrf2 family protein [Pedobacter sp.
BAL39]
gi|149231623|gb|EDM37001.1| transcriptional regulator, rrf2 family protein [Pedobacter sp.
BAL39]
Length = 145
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 64/139 (46%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y I+ L+ + + P +I ++AE I FL +IL + AG + + +G
Sbjct: 2 LSKKTKYAIKALVALGKNVGNPPMQIVKLAEQEMIPRKFLEQILLDMRNAGYLYSKKGAG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + A I + D+++ T+ + C + +C +CG+ NA
Sbjct: 62 GGYSLNKDAADIFLADILRITDGPIAMVPCASLKFYRKCDECHDEVTCGIRKTFIDVRNA 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL Q SI ++ +
Sbjct: 122 TLKVLAQTSIADVIGRETD 140
>gi|300744304|ref|ZP_07073323.1| Rrf2 family protein [Rothia dentocariosa M567]
gi|311112919|ref|YP_003984141.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
gi|300380029|gb|EFJ76593.1| Rrf2 family protein [Rothia dentocariosa M567]
gi|310944413|gb|ADP40707.1| transcriptional regulator [Rothia dentocariosa ATCC 17931]
Length = 170
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +D +R++M + + +I+E + K + LV G++E+ RG
Sbjct: 1 MRLTAFSDVSLRIMMLLSSLQEGEKLSTQRISEGVGTPYNHVAKSVAFLVNQGLLESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGV L + T+ V+++TE + EC +CPL C L +VL +A AF+
Sbjct: 61 RSGGVLLSETGRKATVGQVLRSTEGDIPMIEC-EDENGNCPLDSFCRLRTVLARAREAFY 119
Query: 120 DVLTQYSIECL 130
+ I L
Sbjct: 120 ASVDDVVISEL 130
>gi|15613219|ref|NP_241522.1| hypothetical protein BH0656 [Bacillus halodurans C-125]
gi|4512355|dbj|BAA75320.1| similar to B.subtilis ywgB gene(27%-identity) [Bacillus halodurans]
gi|10173270|dbj|BAB04375.1| BH0656 [Bacillus halodurans C-125]
Length = 132
Score = 99.6 bits (247), Expect = 1e-19, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + Q+AE +S +L KIL L KAG++E+V G
Sbjct: 1 MKYSKATNYALHTVLFLAAATPSKFVGVQQLAERQEVSPTYLSKILTKLAKAGMIESVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R ++I+ LDV+ A E + + +C +H +C + V+ A
Sbjct: 61 ANGGYRLKRDWEEISFLDVIHAIEGTASLFDCDLNHGSEC------LIQKVMVSAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
D L + I L +
Sbjct: 115 DYLREQKIADLTKK 128
>gi|53804893|ref|YP_113471.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
gi|53758654|gb|AAU92945.1| Rrf2 family protein [Methylococcus capsulatus str. Bath]
Length = 153
Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K TDY I +L A + +++A+ I+ KIL+ L +AGIV + RG
Sbjct: 2 LRISKLTDYAIILLDQMARAGEQTFAAAELADQTSIAMPTTSKILKALARAGIVTSTRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG L + + ++ ++ A E + EC A + C SC + S A
Sbjct: 62 RGGYALAQKPEHTSVARIIDAIEGPIALTECSAEQAL-CQQSSSCDVRSHWNVINRAVQT 120
Query: 121 VLTQYSIECLVR 132
L S+ ++R
Sbjct: 121 TLESVSLADMIR 132
>gi|291449865|ref|ZP_06589255.1| transcriptional regulator [Streptomyces albus J1074]
gi|291352814|gb|EFE79716.1| transcriptional regulator [Streptomyces albus J1074]
Length = 147
Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG
Sbjct: 4 MHISAKADYATRALLELAREPARPLTCESIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPAD+IT+LDV +A + + + P G+ GL V R+ +A
Sbjct: 64 EGGYWLGRPADRITLLDVSRAIDGELLTLRGESVSGLAYPGAGA-GLPEVWRRVESAAAG 122
Query: 121 VLTQYSIECLVRNR 134
+L ++ L+ +
Sbjct: 123 ILQGVTLTSLLADE 136
>gi|167586740|ref|ZP_02379128.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
ubonensis Bu]
Length = 127
Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 17 CAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI 75
A+ + P ++ I++ IS +L ++ L + IVE+VRG GG L R A +T+
Sbjct: 1 MALRQEQGPVTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTV 60
Query: 76 LDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
D++ A +E +C D G C + + L S++ LV
Sbjct: 61 ADIIIAVDEPLDATQCGGKGTCDGSKQPDGHCMTHELWATLNQKMVEYLDSVSLQDLVDQ 120
Query: 134 RSSIK 138
+ + +
Sbjct: 121 QRTRE 125
>gi|103486976|ref|YP_616537.1| BadM/Rrf2 family transcriptional regulator [Sphingopyxis alaskensis
RB2256]
gi|98977053|gb|ABF53204.1| transcriptional regulator, BadM/Rrf2 family [Sphingopyxis
alaskensis RB2256]
Length = 147
Score = 99.2 bits (246), Expect = 1e-19, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T Y IR + A H +++ IAEA I FL IL + + G++ + RGR
Sbjct: 2 LSQKTRYTIRAFQHLADHWGRGQVQLADIAEAQNIPPKFLTVILSEMAREGLLISQRGRD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
GG +L P I+ D+V+ T S + C H +C C L S++ K +
Sbjct: 62 GGYQLALPPVDISYGDLVRLTRGSLALVPCAARNAHEHCKNCLPEAECRLRSLMLKVRDE 121
Query: 118 FFDVLTQYSIEC 129
+L + ++
Sbjct: 122 TASILDRITLAD 133
>gi|320334527|ref|YP_004171238.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
maricopensis DSM 21211]
gi|319755816|gb|ADV67573.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
maricopensis DSM 21211]
Length = 155
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ Y + L Y + D +I+E ++ +L +IL L G+V++ +G
Sbjct: 1 MRLSTTDVYAFQALAYLGMQGPDRWIASEEISEQTGVARPYLVRILAALAAKGVVKSKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTS-VLRKALNA 117
GG L R +++ +VV+A + C + + CP C + + + +A
Sbjct: 61 IGGGYALARKPHLVSLCEVVRAIDGPVAPLSCISLNWREPCPEQDRCHARNTIYTRMRDA 120
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL +S+ LV++R++
Sbjct: 121 MLTVLQDFSVADLVQDRTA 139
>gi|294677664|ref|YP_003578279.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter capsulatus
SB 1003]
gi|6136499|sp|O68025|Y166_RHOCA RecName: Full=Putative HTH-type transcriptional regulator rrf2-like
gi|3128259|gb|AAC16111.1| hypothetical protein [Rhodobacter capsulatus SB 1003]
gi|294476484|gb|ADE85872.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter capsulatus
SB 1003]
Length = 150
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 3 LTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
+T++ Y ++ L+ A + I +IA + FL IL L KAG+V ++R
Sbjct: 2 ITQKMKYALKALLELADEARRDSPQALTIEEIATRSGTPKRFLEHILLDLRKAGVVASIR 61
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKA 114
GR GG L + ++I ++V+ + C + DC +C + V +
Sbjct: 62 GRSGGYSLLKAPRDVSISELVRRIDGPIAPLPCLSRSAYQPCDDCHDEAACRIRKVFAEV 121
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIF 141
++ ++ ++E ++ + K+
Sbjct: 122 FWSYLVLIDSLTLEDMLAAGNPAAKLL 148
>gi|329737377|gb|EGG73631.1| HTH-type transcriptional regulator CymR [Staphylococcus epidermidis
VCU028]
Length = 140
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L P++QIT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPSEQITAGDIIRLLEGPITFVESIDSEPP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL +++ L + + + +
Sbjct: 113 DVLDHTTLKYLADYKDTNEDL 133
>gi|84622946|ref|YP_450318.1| hypothetical protein XOO_1289 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188577995|ref|YP_001914924.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A]
gi|84366886|dbj|BAE68044.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188522447|gb|ACD60392.1| Rrf2 family protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 152
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC +H C + +CG+ S R + D
Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSHNHSQ-CGIAHTCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|325830725|ref|ZP_08164109.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
gi|325487132|gb|EGC89575.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
Length = 186
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+R DY R+L D +S IAE I F I LVK G+++TVRG
Sbjct: 1 MDVTRRCDYACRILRAAYKSGDSYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+ L +T+L+V++A + ++ C C C + + A
Sbjct: 61 RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119
Query: 121 VLTQYSIECLVRNRSS 136
+++ L+ +S
Sbjct: 120 YFGAITLKDLIEQGAS 135
>gi|299538065|ref|ZP_07051350.1| putative HTH-type transcriptional regulator [Lysinibacillus
fusiformis ZC1]
gi|298726267|gb|EFI66857.1| putative HTH-type transcriptional regulator [Lysinibacillus
fusiformis ZC1]
Length = 139
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ + + +AE +S +L KIL LVKAG++E+ G
Sbjct: 2 MKYSKATNYALHTMVFLTRNPKGKSMSVESLAEIQKLSPTYLSKILTKLVKAGLIESNPG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG R+ + +I+ LDV+ A E + C + H G C + V+ A N
Sbjct: 62 VNGGYRISKRPQEISFLDVIYAIEGQTSLFSCSSEHNDSFHHQG-CLIEQVMVDAENNMK 120
Query: 120 DVLTQYSIECLVRN 133
+ L + I +
Sbjct: 121 EELNKKFIIDIAHK 134
>gi|269216599|ref|ZP_06160453.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
exigua ATCC 700122]
gi|269130128|gb|EEZ61210.1| iron-sulfur cluster assembly transcription factor IscR [Slackia
exigua ATCC 700122]
Length = 160
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M +T + Y +R++ A H P + +A+ IS +L ++ +PLVK+G++++V
Sbjct: 1 MLVTTKGRYAMRLMADVAHHFEKEGTPLSLRAVAQREGISMKYLEQLARPLVKSGLLKSV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG+ GG L P+ I D+++A E + DC + C
Sbjct: 61 RGKGGGYVLAEPSAAIRAGDILRAAEGNVLPVSSCDGVTFDCARIADCASVKFWIGLDRV 120
Query: 118 FFDVLTQYSIECLVRNRS 135
D + ++ ++
Sbjct: 121 IEDYVDGVMLKDIIDEGD 138
>gi|296116552|ref|ZP_06835162.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295976764|gb|EFG83532.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 152
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY + L+ + ++ + I E + K+L+ L GIV + RG
Sbjct: 2 LKLSKLTDYAVVALVRLG-QKEEVTTSPVLSRSTGIPEPTIAKVLKVLAAQGIVISQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RP QI++ V++A + + C +C CGL A D
Sbjct: 61 RGGYRLARPLAQISVAAVIQAIDGPISLTTCVDGG--ECDARSKCGLVGQWDAVNGAILD 118
Query: 121 VLTQYSIECL 130
L+ S+ +
Sbjct: 119 ALSSISLSDM 128
>gi|329906564|ref|ZP_08274419.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae
bacterium IMCC9480]
gi|327547254|gb|EGF32103.1| Nitrite-sensitive transcriptional repressor NsrR [Oxalobacteraceae
bacterium IMCC9480]
Length = 148
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ +D G+RVL+Y A + +++IA I L K+ L + G V+ R
Sbjct: 1 MRLTRYSDIGLRVLIYLARSGTRESQITVAEIAAQFDIPINHLIKVAGHLARTGWVDATR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+RL A + + ++ E + +C + C L C L L+ + AF
Sbjct: 61 GRNGGLRLAIDATTLHVGTILLELEGKDELIDCDG---LACHLRKDCILRDALKVGMQAF 117
Query: 119 FDVLTQYSIECLVRNRS 135
+D + Y++ L ++
Sbjct: 118 YDAMNGYTLADLCDGKT 134
>gi|291301253|ref|YP_003512531.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
nassauensis DSM 44728]
gi|290570473|gb|ADD43438.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
nassauensis DSM 44728]
Length = 149
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ R DY +R + + ++A A I F IL L + G++E+ RG
Sbjct: 1 MRLSARVDYALRAAVELTSVGEEWLSAEKVAGAQKIPGKFCESILLQLRRGGLIESRRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA +I++ DV++ + +D + L V +
Sbjct: 61 DGGHRLARPAKEISLADVIRVVDGPLVGVRGQRPEHVDYDGTAA-ALRDVWIALRASERK 119
Query: 121 VLTQYSIECLVRNR--SSIKKI 140
+L ++ + + ++++K+
Sbjct: 120 ILESVTLADVAGGKLPAAVRKL 141
>gi|318607414|emb|CBY28912.1| nitrite-sensitive transcriptional repressor NsrR [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 125
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 67/124 (54%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ ISQ+ E +S + KI+ L + G+V VRG+ GG+RL +PADQI I D
Sbjct: 3 SLPEGQMTSISQVTEVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPADQIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L VL +A+ +F + L Y++ +V++ + +
Sbjct: 63 VVRQL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVQDNTPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|288961953|ref|YP_003452263.1| transcriptional regulator [Azospirillum sp. B510]
gi|288914233|dbj|BAI75719.1| transcriptional regulator [Azospirillum sp. B510]
Length = 157
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 58/131 (44%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K TDY I VL A H + ++ +A+ + + K+++ + AG+ + RG
Sbjct: 3 RLSKLTDYAIVVLSEMARHVGTVHTVAHLADRTGVPAPTVAKLMKAMTPAGLTTSQRGAA 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RPA I+I +++ A + + C C + C + K A
Sbjct: 63 GGYALSRPAAAISIAEIITALDGPIALTACVDGADSQCGVEQLCPMRGGWEKVNRAIRGA 122
Query: 122 LTQYSIECLVR 132
L + ++ ++
Sbjct: 123 LEEVTLADMMA 133
>gi|312144048|ref|YP_003995494.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
'sapolanicus']
gi|311904699|gb|ADQ15140.1| transcriptional regulator, BadM/Rrf2 family [Halanaerobium sp.
'sapolanicus']
Length = 149
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+R LMY A + +IAE ISE +L ++ L KA +V+ +RG
Sbjct: 1 MEISSQARYGLRALMYIAASEGSQAIPLREIAEKQNISERYLEQLFAKLKKADLVKGIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + ++IT D++K E ++E + + N F
Sbjct: 61 AHGGYLLNQSPEEITAADILKVLEGPV-ISEQGPEKISSEAEIYKKAAYELWNGLENLIF 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L ++ L + + IK
Sbjct: 120 KHLAAITLADLSKRAAEIKA 139
>gi|310643721|ref|YP_003948479.1| transcriptional regulator [Paenibacillus polymyxa SC2]
gi|309248671|gb|ADO58238.1| Putative transcriptional regulator [Paenibacillus polymyxa SC2]
Length = 132
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/138 (32%), Positives = 69/138 (50%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M TK T+Y + ++ + P + Q+AEA +S +L KIL LVKAG++E+V G
Sbjct: 1 MKFTKATNYALHTMLMLVTDSSVKPIGVQQLAEAQQVSPTYLSKILTRLVKAGMIESVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R D IT LD++ A E + + EC D C + +V+R+A
Sbjct: 61 ANGGYRLSRNKDDITFLDIIHAIEGTNSLFEC------DFVHGSECLIQAVMREAEEKME 114
Query: 120 DVLTQYSIECLVRNRSSI 137
L + L + ++ I
Sbjct: 115 SHLKNTKLVDLAQKQAQI 132
>gi|146299258|ref|YP_001193849.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
johnsoniae UW101]
gi|146153676|gb|ABQ04530.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
johnsoniae UW101]
Length = 136
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L Y A N+ P +I++IA++ IS FL IL L +G + +G+
Sbjct: 2 LSKKTKYGIKALTYLARRENNEPVQIAEIAKSEHISIKFLESILLLLRNSGFLGAKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + I++ V + E + C + DC +C ++ + +
Sbjct: 62 GGYYLIKDPKDISMAKVYRILEGPIALLPCASHNFYEKCDDCDDESTCAARRLMTEVRDN 121
Query: 118 FFDVLTQYSIECLV 131
+L S+ +
Sbjct: 122 TLKILESNSLADIA 135
>gi|242373926|ref|ZP_04819500.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
gi|242348480|gb|EES40082.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
Length = 140
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL +++ L + + + +
Sbjct: 113 DVLDNTTLKYLADYKETDEDL 133
>gi|23013034|ref|ZP_00052988.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 130
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 1/108 (0%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
+ IAE IS +L ++ L K G+V++VRG GG L R Q I D++ A +E
Sbjct: 2 ADIAERQEISLSYLEQLFGKLRKGGLVKSVRGPGGGYLLSRIPQQTRISDIILAVDEPIQ 61
Query: 88 VAECFASHKIDCPLV-GSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
C C G C + + N + L+ S+ + R
Sbjct: 62 TTRCSPGSPAGCHNNKGRCLTHDLWEELGNQIYLYLSSVSLADVCERR 109
>gi|260221649|emb|CBA30424.1| HTH-type transcriptional regulator iscR [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 176
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 8/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R + I ++ A+ + P + IA IS +L ++ L + G+VE+ RG
Sbjct: 1 MRLSTRGRFAITAMIDLALRESGQPVPLQDIALRHRISLSYLEQVFAKLRQNGLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L D IT+ D++ A EE + + +
Sbjct: 61 PGGGYSLGFRGDSITVADIIGAIEEK-------EESSRETSQSAQDMTRDLWAALQSTVV 113
Query: 120 DVLTQYSIECLVRNRSS 136
+ ++ L + +
Sbjct: 114 AHMRTITLRSLAEEQRA 130
>gi|256421070|ref|YP_003121723.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
DSM 2588]
gi|256035978|gb|ACU59522.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
DSM 2588]
Length = 142
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y L++ A + D P IS+IA+ IS FL IL L AGI+ + +G+
Sbjct: 2 LSKKTQYAFHALIHLAENADKGPILISEIAQEKSISIKFLENILLELKNAGILGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I + +++ + + + C + +C CGL V+ K +A
Sbjct: 62 GGYYLLKTPKEIPLAKIIRLLDGAIALLPCVSLNYYEKCENCRDEAVCGLNDVMGKVRDA 121
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+L +++ ++ SI
Sbjct: 122 TLKILETKTLKDILTRNVSI 141
>gi|283957139|ref|ZP_06374603.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter
jejuni subsp. jejuni 1336]
gi|283791315|gb|EFC30120.1| LOW QUALITY PROTEIN: RrF2 family protein, putative [Campylobacter
jejuni subsp. jejuni 1336]
Length = 136
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L+Y + + P + +A I + FL KILQ L K G++++ +G
Sbjct: 1 MLFTKASEYALLSLIYIS-QKETPQDVDSLALELDIPKSFLAKILQTLAKDGLLKSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + +Q TI ++V A ++ V EC + +C L +L N
Sbjct: 60 KGGFALIKEPNQYTIKEIVNSAEKKDISVFECSGGTCPN-NKEKNCTLMPMLVNLQNKVD 118
Query: 120 DVLTQYSIECLVRNR 134
+ L ++E +++N
Sbjct: 119 EFLDSITLEDIMKNN 133
>gi|72160826|ref|YP_288483.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX]
gi|71914558|gb|AAZ54460.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX]
Length = 155
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TD +R++M A+ + +A + K + L + G+VE RGR
Sbjct: 1 MRLTTFTDLSLRIVMRLAVAGEETLTTRSVAGMLAVPYTHAAKAVARLSEMGLVEARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL T+ +V+ E S V C CPL +C L LR+A AFF
Sbjct: 61 GGGLRLTPAGRAATVGSIVRELEGSKDVVAC--EDDPPCPLRAACRLRGELRRAQEAFFA 118
Query: 121 VLTQYSIECLVRNRS 135
L + ++E LV + +
Sbjct: 119 ALDEVTVESLVASPT 133
>gi|218887632|ref|YP_002436953.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfovibrio vulgaris str. 'Miyazaki F']
gi|218758586|gb|ACL09485.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio vulgaris
str. 'Miyazaki F']
Length = 152
Score = 99.2 bits (246), Expect = 2e-19, Method: Composition-based stats.
Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT RT Y RVL+ A+H + P + ++ IS FL +IL+ L +AG+ + RG
Sbjct: 1 MKLTARTRYAARVLVALAVHGTEGPLTTTALSRHTDISVQFLEQILKDLRRAGLTASARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL P +I++ VV+ E +AE + G +A +A
Sbjct: 61 AMGGHRLALPPTKISLGTVVRLMEGGIRIAEHCDLPATPGDRLTCLG----WTRAADAVE 116
Query: 120 DVLTQYSIECLVRNRSSI 137
L +++ L + +
Sbjct: 117 SALDSITLDDLAKGLPDL 134
>gi|319948207|ref|ZP_08022366.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4]
gi|319438142|gb|EFV93103.1| BadM/Rrf2 family transcriptional regulator [Dietzia cinnamea P4]
Length = 160
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51
M +T ++DY +R L+ A D P ++ I FL IL L +A
Sbjct: 1 MRVTAKSDYALRALVELAAARSDDPARAPRDNPVSAEELGRLQDIPHGFLQAILSDLRRA 60
Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
G+V + RG+ GG L R AD+IT+ DV++A + + + L V
Sbjct: 61 GLVASRRGKTGGWFLGRDADEITVADVMRAVDGPLVSVYDVRPEAVVYNERAA-VLQHVW 119
Query: 112 RKALNAFFDVLTQYSIECLVRNR 134
+ A V+ +I L R
Sbjct: 120 IASRAALRRVMDAVTIADLAAGR 142
>gi|58581029|ref|YP_200045.1| hypothetical protein XOO1406 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425623|gb|AAW74660.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae
KACC10331]
Length = 152
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC +H C + +CG+ S R + D
Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSHNHSQ-CGIAHTCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|150018353|ref|YP_001310607.1| BadM/Rrf2 family transcriptional regulator [Clostridium
beijerinckii NCIMB 8052]
gi|149904818|gb|ABR35651.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
beijerinckii NCIMB 8052]
Length = 167
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y I L+Y + I +A ISE +L K+ L KAGI++++ G
Sbjct: 1 MKFSVGVEYAIHCLLYMVKLEEGKSVGIRDLATFQGISETYLSKVYAKLSKAGIIKSIPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTS 109
+GG L R A++IT D+V+A E S +C + D C +
Sbjct: 61 VKGGYALARSAEEITFWDIVEAVEGSESFFQCAEIRQNNILLDKDNLPDTHAKCPCLIKV 120
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A + L + S+
Sbjct: 121 VMSEAEDEMRKYLRKKSLA 139
>gi|311745462|ref|ZP_07719247.1| Rrf2 family protein [Algoriphagus sp. PR1]
gi|126578014|gb|EAZ82234.1| Rrf2 family protein [Algoriphagus sp. PR1]
Length = 138
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T Y + L Y H D I +IAE IS FL IL L KAG++ + +G+
Sbjct: 2 LSKKTKYALHALTYLGKHKDEKTVLIHEIAEEHGISHKFLENILLELKKAGLLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + I + V++ + + C + +C CG+ VL K +
Sbjct: 62 GGYYLIKEPKDIPLSKVIRLLDGPIALLPCVSLNYYEPCDECKNEAQCGINKVLIKVRDE 121
Query: 118 FFDVLTQYSIECLVR 132
+L ++E +++
Sbjct: 122 TLKILENKTLEDILK 136
>gi|223044133|ref|ZP_03614172.1| Rrf2 family protein [Staphylococcus capitis SK14]
gi|314933791|ref|ZP_07841156.1| Rrf2 family protein [Staphylococcus caprae C87]
gi|222442527|gb|EEE48633.1| Rrf2 family protein [Staphylococcus capitis SK14]
gi|313653941|gb|EFS17698.1| Rrf2 family protein [Staphylococcus caprae C87]
Length = 140
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENKLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PAD+IT D+++ E E S + + ++
Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDSVR 112
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
DVL +++ L + + + +
Sbjct: 113 DVLDNTTLKYLADYKETNEDL 133
>gi|15643333|ref|NP_228377.1| hypothetical protein TM0567 [Thermotoga maritima MSB8]
gi|170288170|ref|YP_001738408.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2]
gi|281411786|ref|YP_003345865.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila
RKU-10]
gi|4981083|gb|AAD35652.1|AE001731_9 conserved hypothetical protein [Thermotoga maritima MSB8]
gi|170175673|gb|ACB08725.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2]
gi|281372889|gb|ADA66451.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
naphthophila RKU-10]
Length = 137
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVRGR 60
T R++Y +R+++ A +++I E + F KIL L KAG+V+T RG+
Sbjct: 2 FTMRSEYALRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGK 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +I + ++V + V CP C + ++ ++ N
Sbjct: 62 SGGYMLSRPPKEIKVSEIVFLLDRKSKVF----FDMPGCPDELDCVIRALWKRVENEIEK 117
Query: 121 VLTQYSIECLVRNRSSIKK 139
+L+ ++E LVR + K
Sbjct: 118 ILSGVTLEDLVREQEEKMK 136
>gi|254821269|ref|ZP_05226270.1| hypothetical protein MintA_15127 [Mycobacterium intracellulare ATCC
13950]
Length = 161
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A + + + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMIQLATVSDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L R I+I DV++ + + + LT V R +
Sbjct: 61 REGGYELARSGSDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL Q ++ +
Sbjct: 120 SVLEQTTLADVA 131
>gi|302869746|ref|YP_003838383.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
ATCC 27029]
gi|315503772|ref|YP_004082659.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
gi|302572605|gb|ADL48807.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
ATCC 27029]
gi|315410391|gb|ADU08508.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
Length = 147
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/144 (25%), Positives = 65/144 (45%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA----------IHNDYPNRISQIAEACCISELFLFKILQPLVK 50
M+++ R DY +R ++ A + + +AE+ I FL IL L +
Sbjct: 1 MYISARADYALRAMLAVADAAVTTGDPAAGGGELVKAASLAESQGIPLSFLQGILLDLRR 60
Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
AG++ + RG GG L RP D+I++ DV++A + + + V + GL V
Sbjct: 61 AGLLHSHRGTEGGYALTRPPDEISVGDVLRAVGGAITSVRGIPADRAGYHGVAT-GLRDV 119
Query: 111 LRKALNAFFDVLTQYSIECLVRNR 134
A V+ + ++ L+ +R
Sbjct: 120 WLAVDGAIALVVDRTTLADLLSDR 143
>gi|319795510|ref|YP_004157150.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
EPS]
gi|315597973|gb|ADU39039.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
EPS]
Length = 181
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ A+H P ++ I+ +S +L + L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDIALHGRSGPVTLASISLRQRVSLSYLELLFAKLRRNDLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A I++ D+V + E+ D G C + +
Sbjct: 61 PGGGYSLSRKAALISVADIVLSIEDHGNETT-RRRAGADVDDSGRCEVEELWASVNLRAV 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L S++ LV + +
Sbjct: 120 EFLKSISLQSLVDEQKA 136
>gi|78189265|ref|YP_379603.1| hypothetical protein Cag_1300 [Chlorobium chlorochromatii CaD3]
gi|78171464|gb|ABB28560.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
chlorochromatii CaD3]
Length = 186
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 69/134 (51%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ + Y A + + +++E S+ FL K +Q L KAGI ++V+G
Sbjct: 2 LQVSRKFEYGLHAITYLATKGQNRVVTVKELSEELGFSQEFLSKAMQSLKKAGITKSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG RL +P +IT+ D+ ATE + +C S C + +C + + +
Sbjct: 62 LRGGFRLIKPITEITVADIAVATEGEPHLVQCNIS-AERCHVYATCQHKAFMNTLQHKIH 120
Query: 120 DVLTQYSIECLVRN 133
++L +I L+
Sbjct: 121 ELLATTTIVALLEQ 134
>gi|13473798|ref|NP_105366.1| hypothetical protein mll4516 [Mesorhizobium loti MAFF303099]
gi|14024549|dbj|BAB51152.1| mll4516 [Mesorhizobium loti MAFF303099]
Length = 156
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L++ A + ++ IA I + FL IL L AG V++ +G+
Sbjct: 2 LTKKGKYGLKALVHLAHLPAGQLAFVNDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL R A++I + VV+ + C + DC +C + ++ + A
Sbjct: 62 GGYRLARSAEEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120
Query: 118 FFDVLTQYSIECL 130
+VL Q S+ +
Sbjct: 121 IAEVLDQRSLAEM 133
>gi|73662442|ref|YP_301223.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494957|dbj|BAE18278.1| putative transcriptional regulator [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 139
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 63/136 (46%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ L AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAEENNLSDLYLEQLVGTLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PAD+IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPADEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRS 135
DVL S++ L +
Sbjct: 113 DVLDNTSLKYLAEYKE 128
>gi|78048634|ref|YP_364809.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78037064|emb|CAJ24809.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 152
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC H C + CG+ S R + D
Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHSQ-CGIAQRCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|21243661|ref|NP_643243.1| hypothetical protein XAC2934 [Xanthomonas axonopodis pv. citri str.
306]
gi|294626272|ref|ZP_06704875.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294664777|ref|ZP_06730103.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|21109239|gb|AAM37779.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
gi|292599418|gb|EFF43552.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292605464|gb|EFF48789.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 152
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 69/132 (52%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A IT++++V+A E + EC H C + CG+ S R + D
Sbjct: 62 HGGYRLARAASDITLVEIVEAMEGPLAITECSQDHSQ-CGIAQRCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L + ++ +++
Sbjct: 121 ALRRVTLAQMLQ 132
>gi|148555827|ref|YP_001263409.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148501017|gb|ABQ69271.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
RW1]
Length = 134
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + +L A H + +++ + K++ L +AG++ + RG
Sbjct: 1 MRLSSLADYAVVMLSAAARHGAGERLTATLLSDETGVPLPTAQKLMGRLAQAGLLASARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R I++ D+V+A E + C H+ DC L +C + +
Sbjct: 61 TGGGFRLARDPGAISLADIVEAVEGPIAMTACVDDHRHDCGLESACRVKPHWGVVNDTIR 120
Query: 120 DVLTQYSIECLVR 132
L S+ L R
Sbjct: 121 GALGGVSLATLSR 133
>gi|153209325|ref|ZP_01947344.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat
Q177']
gi|212218766|ref|YP_002305553.1| cysteine desulfurase activator complex subunit SufB [Coxiella
burnetii CbuK_Q154]
gi|120575396|gb|EAX32020.1| FeS assembly SUF system regulator [Coxiella burnetii 'MSU Goat
Q177']
gi|212013028|gb|ACJ20408.1| ABC transporter-associated protein [Coxiella burnetii CbuK_Q154]
Length = 631
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +++ DY V+ A +QIA +S + K+L+ L + +V + RG
Sbjct: 2 LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L R I+I D++ A + + EC C CG+ + FD
Sbjct: 62 NGGYQLARAPQSISIADIITAVDGKPAMTECSRDANR-CEHNAVCGVRENWQLINTLIFD 120
Query: 121 VLTQYSIECLVRNRSSIKKI 140
VL ++ + + +K+I
Sbjct: 121 VLDSLNLADM--QKPLLKRI 138
>gi|282896876|ref|ZP_06304882.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
D9]
gi|281198285|gb|EFA73175.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
D9]
Length = 145
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/143 (30%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y I L+ A H N P +I QIA I + +L ++L L + GI+++ R
Sbjct: 1 MELSCKSEYAILALLEMATHYQNGEPMQIRQIANQQNIPDRYLEQLLATLRRGGIIKSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
G +GG L R +IT+LD+++ E +AE + K S + + ++A A
Sbjct: 61 GSKGGYLLAREPRKITVLDILECLEGLDIKIAEDNTNPKT----ADSGIIDEIWQEARQA 116
Query: 118 FFDVLTQYSIECLVRNRSSIKKI 140
VL +YS+E L R+ +++
Sbjct: 117 ANLVLEKYSLEDLCEKRTLRRQL 139
>gi|240169536|ref|ZP_04748195.1| hypothetical protein MkanA1_09496 [Mycobacterium kansasii ATCC
12478]
Length = 161
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATAPTGNLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RP +I+I DV++ + + + LT V R +
Sbjct: 61 REGGYELARPGSEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLVR 132
VL + ++ +
Sbjct: 120 SVLEETTLADVAA 132
>gi|30262741|ref|NP_845118.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|47528060|ref|YP_019409.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49185589|ref|YP_028841.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|118478131|ref|YP_895282.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
str. Al Hakam]
gi|165868776|ref|ZP_02213436.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167632402|ref|ZP_02390729.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|167637771|ref|ZP_02396050.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|170685225|ref|ZP_02876449.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|170704801|ref|ZP_02895267.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|177649735|ref|ZP_02932737.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190565557|ref|ZP_03018477.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|196043481|ref|ZP_03110719.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|225864745|ref|YP_002750123.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|227814419|ref|YP_002814428.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229604122|ref|YP_002867050.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|254685333|ref|ZP_05149193.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
gi|254722741|ref|ZP_05184529.1| rrf2 family protein [Bacillus anthracis str. A1055]
gi|254737789|ref|ZP_05195492.1| rrf2 family protein [Bacillus anthracis str. Western North America
USA6153]
gi|254743037|ref|ZP_05200722.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
gi|254752103|ref|ZP_05204140.1| rrf2 family protein [Bacillus anthracis str. Vollum]
gi|254760624|ref|ZP_05212648.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
gi|30257373|gb|AAP26604.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|47503208|gb|AAT31884.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49179516|gb|AAT54892.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|118417356|gb|ABK85775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
str. Al Hakam]
gi|164715502|gb|EDR21019.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167514320|gb|EDR89687.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|167532700|gb|EDR95336.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|170130602|gb|EDS99463.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|170670585|gb|EDT21324.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|172084809|gb|EDT69867.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190563584|gb|EDV17549.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|196025790|gb|EDX64459.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|225787545|gb|ACO27762.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|227004844|gb|ACP14587.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229268530|gb|ACQ50167.1| rrf2 family protein [Bacillus anthracis str. A0248]
Length = 133
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I+ LD++ A E + EC K C + + A
Sbjct: 61 PKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPGC------LINEAMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|302868852|ref|YP_003837489.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
ATCC 27029]
gi|315504679|ref|YP_004083566.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
gi|302571711|gb|ADL47913.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
ATCC 27029]
gi|315411298|gb|ADU09415.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
Length = 156
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 8/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
M L+ R DY +R A P QIA A I FL IL L + GI
Sbjct: 1 MRLSARVDYALRAAAELASVAVGGTTGRSRPVTAEQIARAQDIPPKFLESILLQLRRGGI 60
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
V RG GG L RPA +I++ +V++ + ++ L V
Sbjct: 61 VHAQRGPEGGYWLARPAGEISLAEVIRVIDGPLAHVRGQRPEQLGYQGAAR-ALQDVWIA 119
Query: 114 ALNAFFDVLTQYSIECLVR 132
+ ++L +I +
Sbjct: 120 LRASEREILELVTIADVAA 138
>gi|270158822|ref|ZP_06187479.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968]
gi|289166385|ref|YP_003456523.1| hypothetical protein LLO_3073 [Legionella longbeachae NSW150]
gi|269990847|gb|EEZ97101.1| FeS assembly SUF system regulator [Legionella longbeachae D-4968]
gi|288859558|emb|CBJ13523.1| putative conserved hypothetical protein [Legionella longbeachae
NSW150]
Length = 153
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG V++Y A H IA ++ + KIL+ L AG++ +VRG
Sbjct: 2 LRISKLADYGTVVMVYLARHAQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L RPA +I++ ++ A EE EC A H C L C + R A
Sbjct: 62 TGGYQLRRPATEISVSQIIFALEEHRGFTECSA-HPNGCSLQDVCTIQGNWRLISQAIET 120
Query: 121 VLTQYSIECLVR 132
L S+ L +
Sbjct: 121 ALDSVSLATLAK 132
>gi|113867763|ref|YP_726252.1| putative transcriptional regulator [Ralstonia eutropha H16]
gi|113526539|emb|CAJ92884.1| putative transcriptional regulator [Ralstonia eutropha H16]
Length = 185
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 60/143 (41%), Gaps = 11/143 (7%)
Query: 2 HLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
++ +Y + L+Y + +AE + FL K+ L KA +V G
Sbjct: 3 QISTGVEYSLHCLLYLTHSQSAVEEASVRDLAELQGVPHDFLAKLFTKLAKAKLVVATEG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
+GG RL RPA+ IT+ DVV A + + +C F G C + +V
Sbjct: 63 IKGGFRLARPANHITVHDVVVAIDGEKPLFDCLEIRGRCAVFNDDAPGWATRGVCSIQAV 122
Query: 111 LRKALNAFFDVLTQYSIECLVRN 133
++ A A L ++++ L +
Sbjct: 123 MQAAEKAMRAELKRHTLADLSQR 145
>gi|283780532|ref|YP_003371287.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
6068]
gi|283438985|gb|ADB17427.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
6068]
Length = 178
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 2/140 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ +Y +R ++Y A + P Q+A + + +L K+LQ LV+AGI+ + RG G
Sbjct: 2 FSQTVEYALRAVVYLAADSSQPATTEQLAAVTKVPKAYLSKVLQGLVRAGILHSQRGIGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+ L + +TIL+VV+A E + C + C L + AL L
Sbjct: 62 GMTLVKSPADLTILEVVQAVEPVARIRSC--PLGLAWHGEHLCPLHRRMDDALALVEQAL 119
Query: 123 TQYSIECLVRNRSSIKKIFN 142
++ ++ S K +++
Sbjct: 120 GSSTLAEVLAEPSRSKPLWD 139
>gi|210610735|ref|ZP_03288595.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787]
gi|210152299|gb|EEA83306.1| hypothetical protein CLONEX_00785 [Clostridium nexile DSM 1787]
Length = 483
Score = 98.8 bits (245), Expect = 2e-19, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 60/134 (44%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR++ Y A + S+++ +S ++ KI + L A IV G
Sbjct: 1 MQLKNSTDYAIRIVCYLAAQ-ERMVSTSELSRKLNVSANYVPKIAKKLKNAKIVTACEGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
GG L + + I++++++ EE+ + C + C +C + +L N +
Sbjct: 60 NGGYMLAKQPENISLMEIISCVEETMAINRCLEEDRF-CSRNLEDTCKIHKILLSLQNTY 118
Query: 119 FDVLTQYSIECLVR 132
+ L + ++R
Sbjct: 119 NNKLESVKVSDVIR 132
>gi|194364780|ref|YP_002027390.1| transcriptional regulator TrmB [Stenotrophomonas maltophilia
R551-3]
gi|194347584|gb|ACF50707.1| transcriptional regulator, TrmB [Stenotrophomonas maltophilia
R551-3]
Length = 151
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A +++AE + + K+L+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARPGEVLSATELAEFTGLEPPTVSKVLKPLAQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL R A +I++ +VV+A E + EC H C + CG S R + +
Sbjct: 62 RGGYRLTRAAIEISLFEVVEAMEGPLALTECSHDHHQ-CGMAPKCGARSSWRLINDVVSE 120
Query: 121 VLTQYSIECLV 131
L ++ ++
Sbjct: 121 ALRDVTLAQIL 131
>gi|15924616|ref|NP_372150.1| hypothetical protein SAV1626 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15927206|ref|NP_374739.1| hypothetical protein SA1453 [Staphylococcus aureus subsp. aureus
N315]
gi|21283305|ref|NP_646393.1| hypothetical protein MW1576 [Staphylococcus aureus subsp. aureus
MW2]
gi|49483871|ref|YP_041095.1| hypothetical protein SAR1706 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49486459|ref|YP_043680.1| hypothetical protein SAS1562 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57650508|ref|YP_186521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL]
gi|82751225|ref|YP_416966.1| hypothetical protein SAB1496c [Staphylococcus aureus RF122]
gi|87161573|ref|YP_494278.1| hypothetical protein SAUSA300_1583 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|148268107|ref|YP_001247050.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus
subsp. aureus JH9]
gi|150394175|ref|YP_001316850.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus JH1]
gi|151221740|ref|YP_001332562.1| hypothetical protein NWMN_1528 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156979944|ref|YP_001442203.1| hypothetical protein SAHV_1613 [Staphylococcus aureus subsp. aureus
Mu3]
gi|221141104|ref|ZP_03565597.1| hypothetical protein SauraJ_05628 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253314983|ref|ZP_04838196.1| hypothetical protein SauraC_02182 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253732283|ref|ZP_04866448.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253733122|ref|ZP_04867287.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
TCH130]
gi|255006412|ref|ZP_05145013.2| hypothetical protein SauraM_08085 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|257425750|ref|ZP_05602174.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257428410|ref|ZP_05604808.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257431048|ref|ZP_05607427.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus 68-397]
gi|257433734|ref|ZP_05610092.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257436649|ref|ZP_05612693.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257793700|ref|ZP_05642679.1| Rrf2 family protein [Staphylococcus aureus A9781]
gi|258411001|ref|ZP_05681281.1| Rrf2 family protein [Staphylococcus aureus A9763]
gi|258420198|ref|ZP_05683153.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719]
gi|258424052|ref|ZP_05686934.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|258438199|ref|ZP_05689483.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299]
gi|258443662|ref|ZP_05692001.1| transcriptional regulator [Staphylococcus aureus A8115]
gi|258446869|ref|ZP_05695023.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300]
gi|258448783|ref|ZP_05696895.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|258450547|ref|ZP_05698609.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|258453602|ref|ZP_05701580.1| transcriptional regulator [Staphylococcus aureus A5937]
gi|262048619|ref|ZP_06021502.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30]
gi|262051277|ref|ZP_06023501.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3]
gi|269203252|ref|YP_003282521.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98]
gi|282893129|ref|ZP_06301363.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A8117]
gi|282904206|ref|ZP_06312094.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160]
gi|282906032|ref|ZP_06313887.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282908946|ref|ZP_06316764.1| iron-sulfur cluster assembly transcription factor IscR
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282911263|ref|ZP_06319065.1| iron-sulfur cluster assembly transcription factor IscR
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282914431|ref|ZP_06322217.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899]
gi|282916894|ref|ZP_06324652.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus D139]
gi|282919400|ref|ZP_06327135.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus C427]
gi|282920174|ref|ZP_06327899.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A9765]
gi|282924725|ref|ZP_06332393.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus C101]
gi|282928260|ref|ZP_06335865.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A10102]
gi|283770700|ref|ZP_06343592.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus H19]
gi|283958386|ref|ZP_06375837.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284024683|ref|ZP_06379081.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 132]
gi|293503505|ref|ZP_06667352.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus 58-424]
gi|293510523|ref|ZP_06669229.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus M809]
gi|293531063|ref|ZP_06671745.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015]
gi|294848656|ref|ZP_06789402.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A9754]
gi|295406748|ref|ZP_06816553.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A8819]
gi|295428202|ref|ZP_06820834.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296275912|ref|ZP_06858419.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MR1]
gi|297207653|ref|ZP_06924088.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297590830|ref|ZP_06949468.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus MN8]
gi|300911735|ref|ZP_07129178.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus TCH70]
gi|304380777|ref|ZP_07363444.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|13701424|dbj|BAB42718.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
N315]
gi|14247397|dbj|BAB57788.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21204745|dbj|BAB95441.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MW2]
gi|49242000|emb|CAG40697.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49244902|emb|CAG43363.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57284694|gb|AAW36788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus COL]
gi|82656756|emb|CAI81185.1| conserved hypothetical protein [Staphylococcus aureus RF122]
gi|87127547|gb|ABD22061.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|147741176|gb|ABQ49474.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
subsp. aureus JH9]
gi|149946627|gb|ABR52563.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
aureus subsp. aureus JH1]
gi|150374540|dbj|BAF67800.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156722079|dbj|BAF78496.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
Mu3]
gi|253724072|gb|EES92801.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253728878|gb|EES97607.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
TCH130]
gi|257271444|gb|EEV03590.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus 55/2053]
gi|257275251|gb|EEV06738.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus 65-1322]
gi|257278251|gb|EEV08893.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus 68-397]
gi|257281827|gb|EEV11964.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257284000|gb|EEV14123.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|257787672|gb|EEV26012.1| Rrf2 family protein [Staphylococcus aureus A9781]
gi|257840151|gb|EEV64615.1| Rrf2 family protein [Staphylococcus aureus A9763]
gi|257843909|gb|EEV68303.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9719]
gi|257845673|gb|EEV69705.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257848243|gb|EEV72234.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A9299]
gi|257851068|gb|EEV75011.1| transcriptional regulator [Staphylococcus aureus A8115]
gi|257854444|gb|EEV77393.1| Rrf2 family transcriptional regulator [Staphylococcus aureus A6300]
gi|257858061|gb|EEV80950.1| conserved hypothetical protein [Staphylococcus aureus A6224]
gi|257861705|gb|EEV84504.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|257864333|gb|EEV87083.1| transcriptional regulator [Staphylococcus aureus A5937]
gi|259160914|gb|EEW45934.1| hypothetical protein SA930_1708 [Staphylococcus aureus 930918-3]
gi|259163266|gb|EEW47825.1| hypothetical protein SAD30_1015 [Staphylococcus aureus D30]
gi|262075542|gb|ACY11515.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ED98]
gi|269941112|emb|CBI49498.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282313560|gb|EFB43955.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus C101]
gi|282317210|gb|EFB47584.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus C427]
gi|282319381|gb|EFB49733.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus D139]
gi|282321612|gb|EFB51937.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M899]
gi|282324958|gb|EFB55268.1| iron-sulfur cluster assembly transcription factor IscR
[Staphylococcus aureus subsp. aureus WBG10049]
gi|282327210|gb|EFB57505.1| iron-sulfur cluster assembly transcription factor IscR
[Staphylococcus aureus subsp. aureus WW2703/97]
gi|282331324|gb|EFB60838.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus Btn1260]
gi|282590067|gb|EFB95149.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A10102]
gi|282594522|gb|EFB99507.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A9765]
gi|282595824|gb|EFC00788.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus C160]
gi|282764447|gb|EFC04573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A8117]
gi|283460847|gb|EFC07937.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus H19]
gi|283470903|emb|CAQ50114.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus ST398]
gi|283790535|gb|EFC29352.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285817308|gb|ADC37795.1| Iron-sulfur cluster regulator IscR [Staphylococcus aureus 04-02981]
gi|290920331|gb|EFD97397.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus M1015]
gi|291095171|gb|EFE25436.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus 58-424]
gi|291466887|gb|EFF09407.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus M809]
gi|294824682|gb|EFG41105.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A9754]
gi|294968495|gb|EFG44519.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A8819]
gi|295128560|gb|EFG58194.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
subsp. aureus EMRSA16]
gi|296887670|gb|EFH26568.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus ATCC 51811]
gi|297575716|gb|EFH94432.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus MN8]
gi|298694906|gb|ADI98128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300885981|gb|EFK81183.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus TCH70]
gi|302333300|gb|ADL23493.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
aureus subsp. aureus JKD6159]
gi|302751455|gb|ADL65632.1| putative transcriptional regulator, Rrf2 family [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304340653|gb|EFM06586.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus ATCC BAA-39]
gi|312437906|gb|ADQ76977.1| Rrf2 family transcriptional regulator [Staphylococcus aureus subsp.
aureus TCH60]
gi|312830013|emb|CBX34855.1| rrf2 family protein (transcriptional regulator) family protein
[Staphylococcus aureus subsp. aureus ECT-R 2]
gi|315129908|gb|EFT85898.1| hypothetical protein CGSSa03_02453 [Staphylococcus aureus subsp.
aureus CGS03]
gi|315195526|gb|EFU25913.1| hypothetical protein CGSSa00_07665 [Staphylococcus aureus subsp.
aureus CGS00]
gi|315198676|gb|EFU29004.1| hypothetical protein CGSSa01_09149 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320140487|gb|EFW32341.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA131]
gi|320144026|gb|EFW35795.1| Rrf2 family protein [Staphylococcus aureus subsp. aureus MRSA177]
gi|323442831|gb|EGB00456.1| Rrf2 family protein [Staphylococcus aureus O46]
gi|329314301|gb|AEB88714.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
subsp. aureus T0131]
gi|329727351|gb|EGG63807.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
subsp. aureus 21172]
gi|329728427|gb|EGG64864.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
subsp. aureus 21189]
gi|329733167|gb|EGG69504.1| HTH-type transcriptional regulator CymR [Staphylococcus aureus
subsp. aureus 21193]
Length = 140
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++I+ D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQYSIECLVR 132
DVL +++ L
Sbjct: 113 DVLDNTTLKYLAE 125
>gi|253999837|ref|YP_003051900.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp.
SIP3-4]
gi|253986516|gb|ACT51373.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
SIP3-4]
Length = 154
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD G+R LMY + + I+++A+ + L K++ L K G ++ RG
Sbjct: 5 MQLTKFTDLGLRALMYVSQSTHTRMVSITELAQQLNVPRNHLIKVVTFLNKTGWIQATRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL +++ VV+ E + +C + CPL GSCGL VL ++L+ F+
Sbjct: 65 PGGGLRLGMDPASLSLGLVVRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVFY 121
Query: 120 DVLTQYSIECL 130
L Y++ +
Sbjct: 122 RHLDTYTLADV 132
>gi|260221138|emb|CBA29404.1| HTH-type transcriptional regulator iscR [Curvibacter putative
symbiont of Hydra magnipapillata]
Length = 145
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + + + ++ + + P ++ I++ IS +L ++ L + +VE+ RG
Sbjct: 1 MRLTTKGRFAVTAMIDLGLRQSSGPVTLAAISQRQQISLSYLEQLFGKLRRHDLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKA 114
GG L R A IT+ +++ + +E +C K +C G+ C +
Sbjct: 61 PGGGYTLARKASDITVAEIITSVDEPIDATQCSG--KENCLGEGARCMTHDLWASL 114
>gi|210632890|ref|ZP_03297589.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279]
gi|210159358|gb|EEA90329.1| hypothetical protein COLSTE_01496 [Collinsella stercoris DSM 13279]
Length = 150
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 10/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51
M ++ + Y +++++Y A + ++AE IS +L ++++PL+ A
Sbjct: 1 MLISSKGRYALKLMIYIAAIGGDPAAGAKAAPAVSLREVAEREQISLKYLEQLVRPLMNA 60
Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
G++ +VRG+ GG L PA I D+++A E C + C C
Sbjct: 61 GLLRSVRGKGGGYVLAVPAQDIRAGDILRAAEGERSTVAC-EGLEGTCGRSDLCSTVKFW 119
Query: 112 RKALNAFFDVLTQYSIECLVR 132
+ ++ L
Sbjct: 120 TGLEETIEAYVDGVTLAELAH 140
>gi|117929268|ref|YP_873819.1| BadM/Rrf2 family transcriptional regulator [Acidothermus
cellulolyticus 11B]
gi|117649731|gb|ABK53833.1| transcriptional regulator, BadM/Rrf2 family [Acidothermus
cellulolyticus 11B]
Length = 156
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
MH++ +TDY +R ++ A D + +IA+ + FL IL L +A +VE+
Sbjct: 1 MHISAKTDYAMRAMLVLAHAARERADAWVKAEEIADEQRLPRKFLEAILADLRRARLVES 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+RG GG RL +PA I + DV++A + + + GL V
Sbjct: 61 LRGAEGGYRLAKPASAIYVADVMRAVDGPLAEVRGLRPENVRYEGAAA-GLQDVWVAVRA 119
Query: 117 AFFDVLTQYSIECLVRN 133
VL + S+E +
Sbjct: 120 GLRAVLERVSVEDVANR 136
>gi|313201811|ref|YP_004040469.1| BadM/Rrf2 family transcriptional regulator [Methylovorus sp. MP688]
gi|312441127|gb|ADQ85233.1| transcriptional regulator, BadM/Rrf2 family [Methylovorus sp.
MP688]
Length = 154
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 69/131 (52%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD G+R LMY + + I+++A+ + L K++ L K G ++ RG
Sbjct: 5 MQLTKFTDLGLRALMYVSQSTHTRMVSITELAQQLNVPRNHLIKVVTFLNKTGWIQATRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL +++ V++ E + +C + CPL GSCGL VL ++L+ F+
Sbjct: 65 PGGGLRLGMDPASLSLGLVIRTLEGKQSLVDCA---QPACPLAGSCGLKGVLDESLDVFY 121
Query: 120 DVLTQYSIECL 130
L Y++ +
Sbjct: 122 RHLDTYTLADV 132
>gi|319780584|ref|YP_004140060.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317166472|gb|ADV10010.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 156
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L++ A + ++ +A I + FL IL L AG V++ +G+
Sbjct: 2 LTKKGKYGLKALVHLARLPAGQLAFVNDVATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPAD+I + VV+ + C + DC +C + ++ + A
Sbjct: 62 GGYRLARPADEIKVGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120
Query: 118 FFDVLTQYSIECL 130
+VL Q S+ +
Sbjct: 121 IAEVLDQRSLAEM 133
>gi|331270571|ref|YP_004397063.1| rrf2 family protein [Clostridium botulinum BKT015925]
gi|329127121|gb|AEB77066.1| rrf2 family protein (putative transcriptional regulator)
[Clostridium botulinum BKT015925]
Length = 139
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +R+++Y IAE I FL KIL+ L ++GIVE+ RG
Sbjct: 1 MKITQEVDYALRIVLYLCKLGFGEKIEAKFIAEHENIPIRFLLKILRKLKQSGIVESFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + I+ D++ + + ++ C + C + + L
Sbjct: 61 INGGYALNKYPADISFKDIIISIDGPIYMNRCLYDPKSCNLNRSNRCVVHNALASIQTTL 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
L + + L+ +
Sbjct: 121 ITKLESITFKDLLDEYYKL 139
>gi|228475199|ref|ZP_04059925.1| Rrf2 family protein [Staphylococcus hominis SK119]
gi|314936260|ref|ZP_07843607.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80]
gi|228270810|gb|EEK12212.1| Rrf2 family protein [Staphylococcus hominis SK119]
gi|313654879|gb|EFS18624.1| Rrf2 family protein [Staphylococcus hominis subsp. hominis C80]
Length = 140
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 66/141 (46%), Gaps = 12/141 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ ++RG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENHLSDLYLEQLVGPLRNAGLIRSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L P+++I+ D+++ E + E S + + +A
Sbjct: 61 AKGGYQLRVPSEEISAGDIIRLLEGPITIVESIDSEPP--------AQKELWLRMRDAVR 112
Query: 120 DVLTQYS---IECLVRNRSSI 137
+VL + + V + + +
Sbjct: 113 EVLDNTTLKYLADFVESDNDL 133
>gi|88801410|ref|ZP_01116938.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter
irgensii 23-P]
gi|88782068|gb|EAR13245.1| transcriptional regulator, BadM/Rrf2 family protein [Polaribacter
irgensii 23-P]
Length = 137
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L + + P I+ I+++ IS FL IL L K GI+ + +G+
Sbjct: 2 LSKKTKYGIKALTFLGKQENRLPVSIATISKSENISLKFLESILLTLRKNGILGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +I + +++ E + C + DCP +C + ++ +
Sbjct: 62 GGYYLLKEPSEIPMASIMRILEGPISMVPCVSLNFYEKCDDCPDENACSVHRLMTLVRDN 121
Query: 118 FFDVLTQYSIECLV 131
+ ++ L
Sbjct: 122 TLQIFKNTTLADLC 135
>gi|257063216|ref|YP_003142888.1| transcriptional regulator, BadM/Rrf2 family [Slackia
heliotrinireducens DSM 20476]
gi|256790869|gb|ACV21539.1| transcriptional regulator, BadM/Rrf2 family [Slackia
heliotrinireducens DSM 20476]
Length = 136
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R+ Y + V++ A + + +IA+ ISE +L IL+ LVK G + VRG
Sbjct: 1 MLFSTRSQYALSVMVDLAERQAEGYTPLKEIADRQGISEKYLESILKVLVKNGFLIGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L R D T+ DV++ TE+S + + ++ R +A
Sbjct: 61 KGGGYKLTRNPDLYTVGDVLRLTEDSLTQTVEVSQSTNE-------KTAAMWRGLGDAIN 113
Query: 120 DVLTQYSIECLV 131
L ++ L
Sbjct: 114 GYLDSVTVADLA 125
>gi|304440166|ref|ZP_07400057.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304371429|gb|EFM25044.1| Rrf2 family transcriptional regulator [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 141
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY R+ Y A ++I+E I E F +IL+ L AGI + RG
Sbjct: 1 MRITQEVDYAFRICSYLASKKGEVVAATEISETQAIPERFTLRILRKLNLAGITDAKRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL------VGSCGLTSVLRKA 114
GG L R + + ++++A + + C S C C L
Sbjct: 61 YGGYYLVRDKYDLNLYEIIEAIDGPIQINRCLRSEDAYCSKNNTQKEREMCKFHQKLSYI 120
Query: 115 LNAFFDVLTQYSIECLVR 132
N+ ++ Q ++ +
Sbjct: 121 QNSIINMFKQTTLAEFAK 138
>gi|22297713|ref|NP_680960.1| hypothetical protein tll0169 [Thermosynechococcus elongatus BP-1]
gi|22293890|dbj|BAC07722.1| tll0169 [Thermosynechococcus elongatus BP-1]
Length = 148
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y I+ L+ ++ + P + IAE I +L K+L L +AG+V ++RG
Sbjct: 1 MTLTTRGHYSIKALLDLSLLPNYGPASVRAIAERQKIPAPYLEKLLIELRRAGLVRSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L RP I++ D++ A ES F S+ ++
Sbjct: 61 VYGGYQLARPPATISLRDILTAVGESPTPL--FLHPPQPTDGTADWVTLSLWQRLHQKLQ 118
Query: 120 DVLTQYSIECL 130
+ L S+E L
Sbjct: 119 EALASISLEDL 129
>gi|189347463|ref|YP_001943992.1| BadM/Rrf2 family transcriptional regulator [Chlorobium limicola DSM
245]
gi|189341610|gb|ACD91013.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium limicola
DSM 245]
Length = 168
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY IR L+ N IA I FL ++LQ +++ G+V + G
Sbjct: 1 MKVLTKNTDYAIRALLSLGSANGGYLSARSIAGEQDIPYQFLRRLLQEMIRHGLVVSKEG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R I + ++++ + V+EC +I C C L + +
Sbjct: 61 AGGGFMLARNPHDIRVRELIEIFQGRVQVSECLFRKQI-CANRARCVLRHEIMRIEQVVE 119
Query: 120 DVLTQYSIECLVRN 133
+I L+ +
Sbjct: 120 REFDNITIGKLLGD 133
>gi|148269496|ref|YP_001243956.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila
RKU-1]
gi|147735040|gb|ABQ46380.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila
RKU-1]
Length = 137
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 6/139 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEA--CCISELFLFKILQPLVKAGIVETVRGR 60
T R++Y +R+++ A +++I E + F KIL L KAG+V+T RG+
Sbjct: 2 FTMRSEYALRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGK 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP +I + ++V + V CP C + ++ ++ N
Sbjct: 62 SGGYMLARPPKEIKVSEIVFLLDRKSKVF----FDMPGCPDELDCVIRALWKRVENEIEK 117
Query: 121 VLTQYSIECLVRNRSSIKK 139
+L+ ++E L++ + K
Sbjct: 118 ILSGVTLEDLIKEQEEKLK 136
>gi|317488261|ref|ZP_07946828.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|316912643|gb|EFV34185.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
Length = 186
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+R DY R+L + +S IAE I F I LVK G+++TVRG
Sbjct: 1 MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+ L +T+L+V++A + ++ C C C + + A
Sbjct: 61 RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119
Query: 121 VLTQYSIECLVRNRSS 136
+++ L+ +S
Sbjct: 120 YFGAITLKDLIEQGAS 135
>gi|308176299|ref|YP_003915705.1| transcriptional regulator [Arthrobacter arilaitensis Re117]
gi|307743762|emb|CBT74734.1| putative transcriptional regulator [Arthrobacter arilaitensis
Re117]
Length = 152
Score = 98.4 bits (244), Expect = 3e-19, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TD +R +M A +I+E+ + + K + L GI++ RGR
Sbjct: 1 MKLSAFTDVCLRTIMVLATPGTGQLTSREISESVGVPYNHVAKAVLELRTLGILQVTRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A + ++ +++ ++ + +C + +CPL G+C L +V R+A AF+
Sbjct: 61 NGGAMLTGAALESSLGGLLRKLDKRTDIVDCSDHDAQSNCPLAGNCRLRAVFRQAREAFY 120
Query: 120 DVLTQYSIECLV 131
L I+ +
Sbjct: 121 ASLDALKIQDIC 132
>gi|307294771|ref|ZP_07574613.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
chlorophenolicum L-1]
gi|306879245|gb|EFN10463.1| transcriptional regulator, BadM/Rrf2 family [Sphingobium
chlorophenolicum L-1]
Length = 165
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 12/145 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY------------PNRISQIAEACCISELFLFKILQPL 48
M L+ DY + ++ A H + ++ I K++ L
Sbjct: 1 MRLSSFADYAVVLMSAAARHCGAGAGLDPATNKYVKMNATTLSAETGIPLPTAQKLVSRL 60
Query: 49 VKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108
AG++E+ RG GGVRL RP IT+ DVV+A E + C DC L C +
Sbjct: 61 SAAGLLESSRGTGGGVRLSRPPAAITLADVVEAVEGPIAMTACSEMGAHDCSLEQECRIR 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+ A NA L +I L R
Sbjct: 121 PHMNVANNAIRSALAGVTIASLARE 145
>gi|163940519|ref|YP_001645403.1| BadM/Rrf2 family transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229012026|ref|ZP_04169205.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
gi|163862716|gb|ABY43775.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
weihenstephanensis KBAB4]
gi|228749114|gb|EEL98960.1| Transcriptional regulator [Bacillus mycoides DSM 2048]
Length = 133
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAEATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I+ LD++ A E + EC C + V+ A
Sbjct: 61 PKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCL------HQEPGCLINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|229060442|ref|ZP_04197805.1| Transcriptional regulator [Bacillus cereus AH603]
gi|228718825|gb|EEL70446.1| Transcriptional regulator [Bacillus cereus AH603]
Length = 133
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I+ LD++ A E + EC C + ++ A
Sbjct: 61 PKGGYSLSSNWEDISFLDIIHAIEGKTSLFECCL------HQEPGCLINELMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAKK 128
>gi|160894918|ref|ZP_02075692.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50]
gi|156863349|gb|EDO56780.1| hypothetical protein CLOL250_02468 [Clostridium sp. L2-50]
Length = 128
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 1/119 (0%)
Query: 14 LMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++Y A+ H+ + +I++ +S+ +L I + L KA ++E G GG RL R ++
Sbjct: 1 MVYLAVNHDGSFIPLKEISQHEELSQKYLESITRMLSKAHLIEAASGHGGGYRLTREPEE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
++ +++K TE + C + C C + + + + ++ +
Sbjct: 61 YSVGEILKLTEGTLAPVSCLKDDSVPCDRSELCYTLPIWQGLADLINNYFDNMTLADVA 119
>gi|220916006|ref|YP_002491310.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219953860|gb|ACL64244.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 157
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K TDY I +L A + +AE + + K+ + L KAG+V + RGR
Sbjct: 3 RLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRH 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
GG L RPAD I+I ++V+A E + C C L +C + A
Sbjct: 63 GGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122
Query: 120 DVLTQYSIECLVRNRSS 136
L + +V S+
Sbjct: 123 GALRGLPLSSIVLQHSN 139
>gi|332188678|ref|ZP_08390393.1| rrf2 family protein [Sphingomonas sp. S17]
gi|332011295|gb|EGI53385.1| rrf2 family protein [Sphingomonas sp. S17]
Length = 143
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
LT+R+ Y +R +++ A P +++IA + FL IL L A ++++ RG+
Sbjct: 2 LTQRSRYALRAMLFLAEMPPAGPPTSMTRIATEANVPRKFLELILADLKGAQLLDSQRGK 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALN 116
GG RL R A I++ D+++ E + C + DC C + + + +
Sbjct: 62 MGGYRLARAAHLISLGDIIRTIEGPLALVPCVSRTAYRPCNDCKSEADCAIRHAMMRVRD 121
Query: 117 AFFDVLTQYSIEC 129
+L S+
Sbjct: 122 ETARILDGTSLAD 134
>gi|329889571|ref|ZP_08267914.1| rrf2 family protein transcriptional regulator family protein
[Brevundimonas diminuta ATCC 11568]
gi|328844872|gb|EGF94436.1| rrf2 family protein transcriptional regulator family protein
[Brevundimonas diminuta ATCC 11568]
Length = 142
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 51/126 (40%), Gaps = 3/126 (2%)
Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+ A + +++IA IS +L ++ L K G+V+++RG GG RL + ++
Sbjct: 1 MADLAKNGSGRAVSLAEIATRQEISLSYLEQLFARLRKGGLVKSIRGPGGGYRLAKGPEE 60
Query: 73 ITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+ D+V A +E C + + C + L S+ +
Sbjct: 61 TVVADIVLAVDEPIRATRCAAHGTPRGCMTGGARCITHDLWEDLGAEIHRYLAGVSLADV 120
Query: 131 VRNRSS 136
+ R++
Sbjct: 121 IEKRTN 126
>gi|302539851|ref|ZP_07292193.1| Rrf2 family protein [Streptomyces hygroscopicus ATCC 53653]
gi|302457469|gb|EFL20562.1| Rrf2 family protein [Streptomyces himastatinicus ATCC 53653]
Length = 152
Score = 98.1 bits (243), Expect = 3e-19, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DY +R + A+ +D + IA + + FL IL L + G+V + RG
Sbjct: 1 MRISAKADYAVRAALELAVAADDTSLKAEVIAASQGVPHKFLEGILGDLRRGGLVVSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL RPAD+ITI DV++ + ++ + L +
Sbjct: 61 GKGGYRLARPADEITIADVIRVVDGPLVSVRGVRPPELSY-RGPAESLLPLWIAVRANVR 119
Query: 120 DVLTQYSIECLVR 132
+L + ++ +
Sbjct: 120 KILGEVTLAEVAA 132
>gi|294629007|ref|ZP_06707567.1| transcriptional regulator [Streptomyces sp. e14]
gi|292832340|gb|EFF90689.1| transcriptional regulator [Streptomyces sp. e14]
Length = 157
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TD +RVLM A+ + ++A + KI+ L G++ RG
Sbjct: 9 MRLLRSTDMALRVLMRLAVAGETDTPTTREVAADMGVPYTHAAKIVAELQHRGLLTARRG 68
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L +I +V+ E VA+C CPL C L LR+A AF+
Sbjct: 69 RGGGLSLTEAGRGASIGAIVRTMEGEGDVADCTGGDTP-CPLNSDCRLRGALRRAQEAFY 127
Query: 120 DVLTQYSIECLVR 132
L ++ +V
Sbjct: 128 AALDPLTVADMVA 140
>gi|114764573|ref|ZP_01443777.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Pelagibaca bermudensis HTCC2601]
gi|114542949|gb|EAU45969.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius sp. HTCC2601]
Length = 153
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + I++ +S +L ++ L +AG+VE+VRG
Sbjct: 1 MKLSTKGRYAMVALTDIAMQPDGVLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I ++D++ A +E+ A + L + + +
Sbjct: 61 PGGGYRLARPASEIRVVDILGAVDETVDAMHKGAGASGATSGSRAQSLNNRLWQSLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVGN 135
>gi|296536722|ref|ZP_06898782.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC
49957]
gi|296262953|gb|EFH09518.1| FeS assembly SUF system regulator [Roseomonas cervicalis ATCC
49957]
Length = 183
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 58/136 (42%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY + VL +A A I+E + K+L+ L A +VE +RG
Sbjct: 26 LRLSKLTDYAVVVLARL-EAEGGVQTAPGLAAATGIAEPTVSKVLKHLGHASLVEGLRGA 84
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL RP I + DV+ A + + C C G C + A
Sbjct: 85 RGGYRLARPLSSIPLSDVICAIDGPIALTACVDGATGGCEAEGLCPVRGRWDPVNEAIRA 144
Query: 121 VLTQYSIECLVRNRSS 136
L+ S+ + RS+
Sbjct: 145 ALSAISVADIAAPRSA 160
>gi|317123685|ref|YP_004097797.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Intrasporangium calvum DSM 43043]
gi|315587773|gb|ADU47070.1| transcriptional regulator, BadM/Rrf2 family [Intrasporangium calvum
DSM 43043]
Length = 154
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 60/148 (40%), Gaps = 6/148 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M ++ R DY +R ++ A P I +A + FL I L +A +V +
Sbjct: 1 MDISARVDYAVRAMLILAEAAASGSGPVSIEALATEQELPRKFLEAIFADLRRAELVLSR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG GG L RP +I++ DV +A + H+ V L S+ +
Sbjct: 61 RGALGGYALARPQREISVGDVFRAVDGPLAEVRGLRPHETSYAGVAQ-HLPSLWVAVRAS 119
Query: 118 FFDVLTQYSIECLVRN--RSSIKKIFNA 143
+VL S+E L ++++ A
Sbjct: 120 LREVLDGTSLEALRTGALPEPLQQLLTA 147
>gi|84503551|ref|ZP_01001602.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Oceanicola batsensis HTCC2597]
gi|84388041|gb|EAQ01089.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Oceanicola batsensis HTCC2597]
Length = 165
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 58/135 (42%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + +S +A+ IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPEGGLVTLSDVAKRQNISLPYLEQLFVKLRRAEVVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAF 118
GG RL RPA +I +++V+ A +E+ A + +
Sbjct: 61 PGGGYRLARPAAEIRVIEVLAAVDETIDALHKGAGATGGLSGTRAQSVTNRLWEGLSAQV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVGN 135
>gi|120404425|ref|YP_954254.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
vanbaalenii PYR-1]
gi|119957243|gb|ABM14248.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium
vanbaalenii PYR-1]
Length = 148
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/134 (31%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+ TD G+R +M + +D QIA + SE + K + LV+ G+VE R
Sbjct: 1 MQLTRFTDLGLRAMMILSAGEFDDQRVTTRQIAASAGASENHIAKAVSRLVELGLVEARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L ++ +V+ E V C CPL+ C L + A AF
Sbjct: 61 GRVGGLSLTEAGRTASVGRLVRELEGDREVITC--DGDSPCPLLAGCRLRRAMAAAKEAF 118
Query: 119 FDVLTQYSIECLVR 132
+ L +Y++ L R
Sbjct: 119 YAELDRYTVTDLAR 132
>gi|92113358|ref|YP_573286.1| BadM/Rrf2 family transcriptional regulator [Chromohalobacter
salexigens DSM 3043]
gi|91796448|gb|ABE58587.1| transcriptional regulator, BadM/Rrf2 family [Chromohalobacter
salexigens DSM 3043]
Length = 155
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY V+ A H + + +++A+A + + K L+ LVKAG++E+ RG
Sbjct: 2 LKLSKLTDYAAVVMAQIARHPEQAHAATELADAVQLPHPTVSKTLKMLVKAGLLESRRGS 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA IT D++ A E + EC + DC L+ +CG+ ++ A
Sbjct: 62 LGGYRLARPAAAITASDIIGAIEGPVAMTEC-SHADGDCDLLATCGVADNWQRVSLAIRT 120
Query: 121 VLTQYSIECLVRN 133
+L ++ L +
Sbjct: 121 LLDSVTLAHLAQE 133
>gi|57239141|ref|YP_180277.1| hypothetical protein Erum4120 [Ehrlichia ruminantium str.
Welgevonden]
gi|57161220|emb|CAH58136.1| conserved hypothetical protein [Ehrlichia ruminantium str.
Welgevonden]
Length = 156
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M T R Y I ++ A + P R+S IA +SE +L +++ L K G++
Sbjct: 1 MLTTARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+G GG L IT+ ++++ E+ + C + C +
Sbjct: 61 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N D L S+E +V N
Sbjct: 121 GNYIKDYLNNISLEDIVNNN 140
>gi|300024335|ref|YP_003756946.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Hyphomicrobium denitrificans ATCC 51888]
gi|299526156|gb|ADJ24625.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 184
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+Y + L++ + +A+ IS FL KI L KAGIVE G RGG RL
Sbjct: 8 VEYALHCLLWLTEPVEQRPSSRDLADLQGISPAFLAKIFAKLEKAGIVEASGGIRGGYRL 67
Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
RP +I++L+VV A E S + +C F + G C + +V+ +A
Sbjct: 68 ARPTSKISVLNVVDAVEGSKPLFDCQEVRGRCALFENKPPKWATKGVCEIHAVMLRAEKV 127
Query: 118 FFDVLTQYSIECLVRNRS 135
D L++ ++ L +
Sbjct: 128 LRDELSKTTLASLSDGKR 145
>gi|88811720|ref|ZP_01126974.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231]
gi|88791111|gb|EAR22224.1| hypothetical protein NB231_04925 [Nitrococcus mobilis Nb-231]
Length = 153
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 59/129 (45%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + TDYGI +L A +++A+ + + + KIL+ L + GI+ + RG +
Sbjct: 3 RINRETDYGISILTLMARRRRERFNAAELAQWRRLPQPIVSKILKHLARNGILISYRGVQ 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L R ++I++ D++ A E + EC C +C +++ R
Sbjct: 63 GGYALARSPEEISLADIIVALEGPISLTECVIGGADACQYGANCAVSARWRHINQKIRMA 122
Query: 122 LTQYSIECL 130
L S+ +
Sbjct: 123 LEAISLAEM 131
>gi|329850522|ref|ZP_08265367.1| rrf2 family protein transcriptional regulator family protein
[Asticcacaulis biprosthecum C19]
gi|328840837|gb|EGF90408.1| rrf2 family protein transcriptional regulator family protein
[Asticcacaulis biprosthecum C19]
Length = 163
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 19/146 (13%)
Query: 12 RVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ A++ P +S+I+E IS +L ++ L KAG+V++ RG GG L R
Sbjct: 1 MAMTDLALNGQAGRPISLSEISERQQISLSYLEQLFARLRKAGLVKSARGPGGGYSLSRG 60
Query: 70 ADQITILDVVKATEESFFVAEC-----------------FASHKIDCPLVGSCGLTSVLR 112
A+++ + ++V A +E C A P C ++
Sbjct: 61 AERLFVSEIVLAVDEPIKATRCELTSNKLGANKRLGKDEAAREIGCMPGGQRCLTHNLWE 120
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIK 138
A D L+Q S+E +VR R+ K
Sbjct: 121 DLGVAIHDYLSQVSLEDVVRKRTRKK 146
>gi|197121302|ref|YP_002133253.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Anaeromyxobacter sp. K]
gi|196171151|gb|ACG72124.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
K]
Length = 157
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K TDY I +L A + +AE + + K+ + L KAG+V + RGR
Sbjct: 3 RLSKLTDYAIVILANLARAGEGTLTAQDLAERSKVPLPTVSKLCKELSKAGLVLSHRGRH 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
GG L RPAD I+I ++V+A E + C C L +C + A
Sbjct: 63 GGYGLARPADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122
Query: 120 DVLTQYSIECLVRNRSS 136
L + +V S+
Sbjct: 123 GALRGLPLSSIVLQHSN 139
>gi|238757525|ref|ZP_04618710.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC
35236]
gi|238704287|gb|EEP96819.1| HTH-type transcriptional repressor nsrR [Yersinia aldovae ATCC
35236]
Length = 125
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ ISQ+ + +S + KI+ L + G+V VRG+ GG+RL +PA QI I D
Sbjct: 3 SLPEGQMTSISQVTDVYGVSRNHMVKIINQLSRVGLVTAVRGKNGGIRLGKPAAQIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L VL +A+ +F + L Y++ +V++ S +
Sbjct: 63 VVREL-EPLSLVNCSSDF---CHITPACRLKQVLNQAVQSFLNELDNYTLADMVKDNSPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|302866552|ref|YP_003835189.1| Rrf2 family transcriptional regulator [Micromonospora aurantiaca
ATCC 27029]
gi|302569411|gb|ADL45613.1| transcriptional regulator, Rrf2 family [Micromonospora aurantiaca
ATCC 27029]
Length = 145
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +R+ M + + ++A + + K++Q L + G++ T+RGR
Sbjct: 1 MRLNRSTDMALRIAM-LTAASPVRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV A IT+ VV+A E V +C CPLV C L LR+A AF
Sbjct: 60 SGGVAFAEHAGDITVGGVVRAFEGDGEVVDCAQPV---CPLVAECRLRGELRRAQAAFLA 116
Query: 121 VLTQYSIECLVR 132
VL + LV
Sbjct: 117 VLDGVRLGDLVD 128
>gi|298241400|ref|ZP_06965207.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297554454|gb|EFH88318.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 137
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ T+Y + ++Y A+ + Q+AE +S +L KIL LVKAG++E+ G
Sbjct: 1 MKYSQATNYALHTMLYLVALPLGKTVGVQQLAELQGLSPTYLSKILTKLVKAGMIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R ++ L+V+ A E + + C C + V+ A
Sbjct: 61 INGGYKLTRNKADLSFLEVIHAIEGTASLFHCDDGKD-----HQGCLIQGVMTHAEQQME 115
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L + + LV + +
Sbjct: 116 AYLKERKLVELVGQVGDVNAL 136
>gi|257791023|ref|YP_003181629.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|257474920|gb|ACV55240.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
Length = 186
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+R DY R+L + +S IAE I F I LVK G+++TVRG
Sbjct: 1 MDVTRRCDYACRILRAAYKSGEAYVSVSDIAEQEDIPYAFARSIQHDLVKGGLIKTVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+ L +T+L+V++A + ++ C C C + + A
Sbjct: 61 RGGLALNCDPAAVTLLEVLEAVQGPVSISLCVMDPAY-CDKQKDCAYNKLWQGADRLLNA 119
Query: 121 VLTQYSIECLVRNRSS 136
+++ L+ +S
Sbjct: 120 YFGAITLKDLIEQGAS 135
>gi|297537962|ref|YP_003673731.1| BadM/Rrf2 family transcriptional regulator [Methylotenera sp. 301]
gi|297257309|gb|ADI29154.1| transcriptional regulator, BadM/Rrf2 family [Methylotenera sp. 301]
Length = 153
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/137 (33%), Positives = 73/137 (53%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD +RVLMY P I++IAE + L K++ L K G V RG
Sbjct: 1 MQLTKFTDLSLRVLMYLTQEERLMPVTINEIAEQFTVPRNHLIKVVTRLNKLGWVSATRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+RL A+Q+ + +V++ E + + +C K C L G+C L +L L AF+
Sbjct: 61 RNGGLRLGVQANQLKLGNVLQELENASALIDCA---KPPCALKGNCHLKEILDIGLKAFY 117
Query: 120 DVLTQYSIECLVRNRSS 136
+ + +S+ +V +++
Sbjct: 118 EHMNTFSLADVVNHKTQ 134
>gi|271964996|ref|YP_003339192.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium
roseum DSM 43021]
gi|270508171|gb|ACZ86449.1| BadM/Rrf2 family transcriptional regulator [Streptosporangium
roseum DSM 43021]
Length = 142
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TD +RV M A+ Q+AE I K++ L G+VE RG
Sbjct: 1 MRLTKFTDLALRVTMRLAVAEQGTSLTTRQVAEVMAIPYTHTAKVIARLQHLGVVEARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L ++ +V+ E V C + CPL +C L LR A AF+
Sbjct: 61 RGGGLELTVAGRTASLGWLVRELEGEEEVVAC--EGETPCPLRAACRLRGALRGAQQAFY 118
Query: 120 DVLTQYSIECLVRNRS 135
L ++ LV + +
Sbjct: 119 ASLDPLTVNDLVASPT 134
>gi|298492262|ref|YP_003722439.1| BadM/Rrf2 family transcriptional regulator ['Nostoc azollae' 0708]
gi|298234180|gb|ADI65316.1| transcriptional regulator, BadM/Rrf2 family ['Nostoc azollae' 0708]
Length = 145
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 72/142 (50%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ ++ Y I L+ A H + P +I QIA I + +L ++L L + GIV++ R
Sbjct: 1 MELSCKSQYAILALLEMATHYESGEPMQIRQIAAQQDIPDRYLEQLLATLRRGGIVKSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R +I++ ++++ E + + V S + + ++A A
Sbjct: 61 GSKGGYLLAREPWKISVFEILECLEG---LDIKPGEDDTNSKSVDSSIVDEIWQEARQAA 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
VL ++S++ L + R S +++
Sbjct: 118 NAVLQKHSLQALCQERDSRRQL 139
>gi|116622995|ref|YP_825151.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116226157|gb|ABJ84866.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
usitatus Ellin6076]
Length = 158
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ +Y IR ++ A + IAE I FL KILQ L + G++ + +G
Sbjct: 1 MIYSRSAEYAIRAFVHLAQVQEGKYAMVKNIAEQEDIPAHFLAKILQQLARKGLLRSSKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L A +I +LD+V+A + +C + +C C + +
Sbjct: 61 PTGGFALRVDASEIRLLDIVEALDGLAPYQQCASGL-SECSDDMPCSMHDSWIALRSRIM 119
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
D L + +I L + KK
Sbjct: 120 DYLGKNTIADLAKALEQKKKSL 141
>gi|172057245|ref|YP_001813705.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171989766|gb|ACB60688.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 131
Score = 98.1 bits (243), Expect = 4e-19, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY IRVL+Y ++ + +I ++A+ IS+ L KI+ L K G++ + +GR
Sbjct: 1 MKMTRSTDYAIRVLLYATLNPNRLVQIQEVADHYAISKNHLMKIVHALSKFGLITSYQGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L + ++IT+ VV EE ++ E ++ +A F +
Sbjct: 61 NGGFKLAKAPNEITLGQVVALFEEVSYLKEVLPTN----EKETLKNTRQAFDEAFLLFAN 116
Query: 121 VLTQYSIECLVR 132
L Y++E L +
Sbjct: 117 ALQAYTLEDLTK 128
>gi|254509696|ref|ZP_05121763.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
bacterium KLH11]
gi|221533407|gb|EEE36395.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
bacterium KLH11]
Length = 152
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + D + +I+E IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQSSDALVTLGEISERQDISLPYLEQLFVKLRRADLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL R +I +++++ A +E+ + +
Sbjct: 61 PGGGYRLARAPSEIRVVEILAAVDETVDAMHKGAGATGASSGSRAQSLTNRLWESLSANV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + ++RN
Sbjct: 121 YVFLHQTRLSDVIRN 135
>gi|166711249|ref|ZP_02242456.1| hypothetical protein Xoryp_07195 [Xanthomonas oryzae pv. oryzicola
BLS256]
Length = 152
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK TDY VL A D S++AE + + KIL+PL +AG+VE +RG
Sbjct: 2 LRVTKLTDYATVVLTVLAARCDQVLSASELAEQAGLEAPTVSKILKPLSQAGLVEGLRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R A I+++++V+A E + EC +H C + +CG+ S R + D
Sbjct: 62 HGGYRLARAASDISLVEIVEAMEGPLAITECSQNHSQ-CGIAHTCGVRSNWRLINDVVGD 120
Query: 121 VLTQYSIECLVR 132
L ++ +++
Sbjct: 121 ALRHVTLAQMLQ 132
>gi|229488650|ref|ZP_04382516.1| transcriptional regulator [Rhodococcus erythropolis SK121]
gi|229324154|gb|EEN89909.1| transcriptional regulator [Rhodococcus erythropolis SK121]
Length = 154
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ + + + ++ P +++AE +S+ +L K L+ L AG+V GR
Sbjct: 1 MKLSGGVEWSLHCCVVLS-QSEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R ++IT+LDVV+A + + C A+ C +CG+ V+
Sbjct: 60 DGGYVLTRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQC--RSACGIAKVMA 117
Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIF 141
A A+ L+ +I L + +++KI
Sbjct: 118 DAEKAWRASLSGVTIADLAATLDLPALRKIL 148
>gi|254488419|ref|ZP_05101624.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp.
GAI101]
gi|214045288|gb|EEB85926.1| transcriptional regulator, BadM/Rrf2 family [Roseobacter sp.
GAI101]
Length = 153
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + IAE IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALTDIALQPPGGLVSLGDIAERQSISLPYLEQLFVKLRRAELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA I ++D++ A +E A + LT+ +
Sbjct: 61 PGGGYRLGRPASDIRVVDILSAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVANE 136
>gi|292490815|ref|YP_003526254.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4]
gi|291579410|gb|ADE13867.1| FeS assembly SUF system regulator [Nitrosococcus halophilus Nc4]
Length = 163
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K TDYGI ++ A + + ++ + + KIL+ L +A ++ + RG
Sbjct: 2 LRMSKMTDYGIVLMTRLAADPKGQHAAADLSAQVEMPLPTVSKILKQLARAQLLVSSRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L RP + I++ +++ E + EC + +C C + A +
Sbjct: 62 QGGYSLARPPETISVAEIITTLEGPIGLTECIS-TPGECGQESHCSTRVHWERINQAVYG 120
Query: 121 VLTQYSIECLVR 132
L + + +V+
Sbjct: 121 ALNEIKLSDMVQ 132
>gi|254774316|ref|ZP_05215832.1| hypothetical protein MaviaA2_06565 [Mycobacterium avium subsp.
avium ATCC 25291]
Length = 161
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RP I+I DV++ + + + LT V R +
Sbjct: 61 REGGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL + ++ +
Sbjct: 120 LVLEETTLADVA 131
>gi|154503668|ref|ZP_02040728.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149]
gi|153795768|gb|EDN78188.1| hypothetical protein RUMGNA_01492 [Ruminococcus gnavus ATCC 29149]
Length = 486
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IR++ Y A + ++++ I ++ KI + L + IV+ G
Sbjct: 1 MQLTNTTDYAIRIVCYLASE-NKVITTAELSRELNIPASYIPKITKQLKEKEIVKAAEGS 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
GG L + ++I+++DV+ TE + ++ C C C + VL N +
Sbjct: 60 NGGYMLEKRPEEISLMDVINCTESTMAISRCLEKDGY-CSRNYSDCCKVHKVLLDLQNTY 118
Query: 119 FDVLTQYSIECLVR 132
+ L I +++
Sbjct: 119 NNRLENVKISDIIQ 132
>gi|315502962|ref|YP_004081849.1| transcriptional regulator, badm/rrf2 family [Micromonospora sp. L5]
gi|315409581|gb|ADU07698.1| transcriptional regulator, BadM/Rrf2 family [Micromonospora sp. L5]
Length = 145
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TD +R+ M + + ++A + + K++Q L + G++ T+RGR
Sbjct: 1 MRLNRSTDMALRIAM-LTAASPVRATVDELATRLELPRSHVAKVVQRLQRIGVLVTIRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV A IT+ VV+A E V +C CPLV C L LR+A AF
Sbjct: 60 SGGVAFAEHAGDITVGRVVRAFEGDGEVVDCAQPV---CPLVAECRLRGELRRAQAAFLA 116
Query: 121 VLTQYSIECLVR 132
VL + LV
Sbjct: 117 VLDGVRLGDLVD 128
>gi|54293583|ref|YP_125998.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens]
gi|53753415|emb|CAH14868.1| hypothetical protein lpl0635 [Legionella pneumophila str. Lens]
gi|307609396|emb|CBW98885.1| hypothetical protein LPW_06721 [Legionella pneumophila 130b]
Length = 153
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG V++Y A H IA ++ + KIL+ L AG++ +VRG
Sbjct: 2 LRVSKLADYGTVVMVYLAKHPQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA +I++ ++ A EE EC DC L G C + R +A
Sbjct: 62 SGGYRLQRPAAEISVSQIIFALEEHRGFTECSMQP-NDCFLQGVCTIQGNWRLISHAIET 120
Query: 121 VLTQYSIECLVR 132
L S+E L +
Sbjct: 121 ALDSVSLEALAK 132
>gi|15896762|ref|NP_350111.1| hypothetical protein CA_C3525 [Clostridium acetobutylicum ATCC 824]
gi|15026619|gb|AAK81451.1|AE007849_5 Uncharacterized conserved protein, YjeB/RRF2 family [Clostridium
acetobutylicum ATCC 824]
gi|325510933|gb|ADZ22569.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
Length = 168
Score = 97.7 bits (242), Expect = 4e-19, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y I +A ISE +L K+ L K+GI++++ G
Sbjct: 1 MKFSVGVEYALHCLLYMVNAEEGKSVGIRDLATFQGISETYLSKVYAKLSKSGIIKSIPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----------SHKIDCPLVGSCGLTS 109
+GG L R A++IT DVV+A E S +C ++ D C +
Sbjct: 61 VKGGYALARSAEEITFWDVVEALEGSESFFQCAEIRQNNILLDKNNLPDTHTKCPCLIKV 120
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A + L ++
Sbjct: 121 VMVEAEDEMRKYLRNKTLA 139
>gi|260467181|ref|ZP_05813358.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
gi|259029034|gb|EEW30333.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
Length = 149
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L++ A + IA I + FL IL L AG V++ +G+
Sbjct: 2 LTKKGKYGLKALVHLARMPAGQLAFVGDIATGNNIPKKFLDAILGELRNAGFVQSRKGKD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPAD+I I VV+ + C + DC +C + ++ + A
Sbjct: 62 GGYRLARPADEIEIGHVVRVLDGPLAPIPCASRTQYQRCEDCN-EATCQVRHLMLEVRQA 120
Query: 118 FFDVLTQYSIECL 130
+VL Q S+ +
Sbjct: 121 IAEVLDQRSLAEM 133
>gi|323694029|ref|ZP_08108212.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum
WAL-14673]
gi|323501915|gb|EGB17794.1| hypothetical protein HMPREF9475_03075 [Clostridium symbiosum
WAL-14673]
Length = 165
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R ++Y A + + ++I EA ++++F+ K+L+ L AG+V + G
Sbjct: 10 MQLTMTTDYALRCMLYLAG-KEGLSSSTEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 68
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL + A +I +LD++ E++ + C + C +C + +
Sbjct: 69 TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 127
Query: 121 VLTQYSIECLVRNRSSIKK 139
+ +++ ++ + K+
Sbjct: 128 FFGRDTLQDVIDYGKNKKR 146
>gi|159038921|ref|YP_001538174.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917756|gb|ABV99183.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola
CNS-205]
Length = 156
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
M L+ R DY +R + A QIA A I FL IL L + G+
Sbjct: 1 MRLSARVDYALRAVAELASVTSGVSTGRGRTVTADQIARAQEIPPKFLESILLQLRRGGV 60
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
V RG GG L RPA++I++ +V++ + ++ L V
Sbjct: 61 VRAQRGPEGGYWLARPAEEISLAEVIRVIDGPLAHVRGQRPEQLGYHGAAR-ALQDVWIA 119
Query: 114 ALNAFFDVLTQYSIECLV 131
+ +L ++ +
Sbjct: 120 LRASERQILELVTVADVA 137
>gi|317057079|ref|YP_004105546.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
gi|315449348|gb|ADU22912.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
Length = 149
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R +YGI L AI+ S I+E IS+ +L +I+ L + G V+ +
Sbjct: 1 MKISTRVEYGIIALADIAINGANGKTVSSSDISERQDISQKYLEQIIISLRQGGFVKGQK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCGLTSVLRKALN 116
G RGG L RPA++I + +++ A + S E + +C L K +
Sbjct: 61 GSRGGYMLSRPAEKIYLSEILNALDNSILADAYEESEENTAGMRNSVNCCL---WDKINS 117
Query: 117 AFFDVLTQYSIECLVRNRSS 136
Q ++ L+
Sbjct: 118 YMRSFTEQMTLADLIAGHKE 137
>gi|256783279|ref|ZP_05521710.1| hypothetical protein SlivT_02175 [Streptomyces lividans TK24]
Length = 146
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+TK TD +R +M A D P ++AE + K + L G+VE RGR
Sbjct: 1 MTKFTDLALRSVMRLAVVRDGDEPLATREVAEVVGVPYTHAAKAITRLQHLGVVEARRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + ++ +V+ E V +C CPL G+C L LR A AF+
Sbjct: 61 GGGLTLTDLGRRASVGWLVRELEGEAEVVDC--EGDNPCPLRGACRLRRALRDAQEAFYA 118
Query: 121 VLTQYSIECLVR 132
L ++ LV
Sbjct: 119 ALDPLTVTDLVA 130
>gi|224476724|ref|YP_002634330.1| hypothetical protein Sca_1238 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421331|emb|CAL28145.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 139
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKTIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PAD+I D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPISFVESIDSEPP--------AQKELWLRMRDAVR 112
Query: 120 DVLTQYSIECLVRNRSS 136
+VL +++ L S
Sbjct: 113 EVLDGTTLKYLAEFNDS 129
>gi|166032645|ref|ZP_02235474.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC
27755]
gi|166027002|gb|EDR45759.1| hypothetical protein DORFOR_02360 [Dorea formicigenerans ATCC
27755]
Length = 148
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 37/136 (27%), Positives = 67/136 (49%), Gaps = 1/136 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ YG+R L+ +++ + + IAE IS +L ++ L KAGIV++++G
Sbjct: 1 MKLSMKSRYGLRALIDLSVNFKNEQVALGGIAERNNISPQYLEQVFASLRKAGIVKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L +PA+QITI +V++A E + + D V+ K
Sbjct: 61 SQGGYFLNKPAEQITISEVIEALEGDYRIEAEDVPEDCDYKAAPEAIQKLVIDKVNYELE 120
Query: 120 DVLTQYSIECLVRNRS 135
+LT ++ L +
Sbjct: 121 KILTGITLYDLEKEYQ 136
>gi|83593906|ref|YP_427658.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
ATCC 11170]
gi|83576820|gb|ABC23371.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
ATCC 11170]
Length = 154
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 1/130 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ K TDY + +L+ A D QIA + + K+++ LV+ +V + RG
Sbjct: 3 RINKLTDYAVVLLVDMA-RTDKVRAAQQIACDTGVPLPTVAKVMKALVRGNLVISQRGAT 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RPA +IT+ D+++A E + C + C L C + + +
Sbjct: 62 GGYGLARPACEITVADMIQALEGPVALTACVETTDDACGLETLCPMHGHWNRVNKRVEEA 121
Query: 122 LTQYSIECLV 131
L S+ +
Sbjct: 122 LRTVSLAEMA 131
>gi|239834406|ref|ZP_04682734.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
intermedium LMG 3301]
gi|239822469|gb|EEQ94038.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
intermedium LMG 3301]
Length = 232
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 84 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 143
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNAF 118
GG L RPA++I I ++++A + + C + D C + ++ A
Sbjct: 144 GGFCLARPANEIAIGNIIRALDGALAPIACASKTDYRPCDDCDEDECEVRQMMLDVREAI 203
Query: 119 FDVLTQYSIEC 129
VL ++
Sbjct: 204 ASVLDHRTLAD 214
>gi|261406703|ref|YP_003242944.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
Y412MC10]
gi|261283166|gb|ACX65137.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
Y412MC10]
Length = 161
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 40/152 (26%), Positives = 65/152 (42%), Gaps = 16/152 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K DY + L++ A D+ I +++ +SE +L KI+ L + GIV V G
Sbjct: 1 MQFSKSVDYALHALIHLAQSERDHNIGIKELSATLGVSESYLSKIMSKLRQDGIVRAVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---------------ASHKIDCPLVGS 104
GG L +PA QIT L+V++ E + EC + D P
Sbjct: 61 VNGGYELAKPARQITFLEVIQVIEGRQQLFECSNLKSQQHRLLTEEKPSDRNEDKPGACV 120
Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
C + V+ A L + +I+ ++ S
Sbjct: 121 CLVKQVMDGAERQLNQYLEEQTIQSVLDAASK 152
>gi|120405372|ref|YP_955201.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
vanbaalenii PYR-1]
gi|119958190|gb|ABM15195.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium
vanbaalenii PYR-1]
Length = 158
Score = 97.7 bits (242), Expect = 5e-19, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMIELATADDGALVKTDDLAKAQGIPPQFLVDILSDLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RPA I+I DV++ + + + LT V R +
Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL Q S+ +
Sbjct: 120 SVLEQTSVADVA 131
>gi|94313237|ref|YP_586446.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
metallidurans CH34]
gi|93357089|gb|ABF11177.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
metallidurans CH34]
Length = 191
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 61/142 (42%), Gaps = 11/142 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ +YG+ L+Y + + +AE I +L K+ L KA +V G
Sbjct: 4 ISTGVEYGLHCLLYLSRSQASVETASVRDLAELQGIPADYLAKLFTKLAKANLVVATEGI 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVL 111
RGG L RPAD+IT+ DVV A + + +C F G C + +V+
Sbjct: 64 RGGFSLARPADKITVHDVVVAIDGDKPLFDCLEIRDRCAVFDEAPPAWATRGVCSIHAVM 123
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
+ A A L Q+++ +
Sbjct: 124 QSAEKAMRHELRQHTLLDIANR 145
>gi|86609933|ref|YP_478695.1| transcriptional regulator [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558475|gb|ABD03432.1| transcriptional regulator, putative [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 151
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y I+ L+ A + + + IA+ I +L K+L L +AG+V + RG
Sbjct: 1 MRLTTRATYSIKALLDLAMLGSGQMASVRAIAQRQGIPAPYLEKLLIELRQAGLVCSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG RL R +I I ++ A ES + E + + ++ ++
Sbjct: 61 AQGGYRLARAPRRIPISAILAAVGESLDPLVESSDATAVYSAERLDWVTEALWKRIARQV 120
Query: 119 FDVLTQYSIECL 130
VL + ++E L
Sbjct: 121 QQVLEETTLEDL 132
>gi|58579092|ref|YP_197304.1| hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str.
Welgevonden]
gi|58417718|emb|CAI26922.1| Hypothetical protein ERWE_CDS_04280 [Ehrlichia ruminantium str.
Welgevonden]
Length = 160
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA------IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M T R Y I ++ A + P R+S IA +SE +L +++ L K G++
Sbjct: 5 MLTTARLRYAIMFMVKLAHGLCTQQNKLQPVRMSYIASNQSLSEGYLEQVIVQLKKKGLI 64
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+G GG L IT+ ++++ E+ + C + C +
Sbjct: 65 NATKGPGGGYSLSIAPHLITLSLILESIGENIKITRCENNSPGCLSNNNRCVTHKLWDDI 124
Query: 115 LNAFFDVLTQYSIECLVRNR 134
N D L S+E +V N
Sbjct: 125 GNYIKDYLNNISLEDIVNNN 144
>gi|319649301|ref|ZP_08003459.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
gi|317398935|gb|EFV79615.1| transcriptional regulator [Bacillus sp. 2_A_57_CT2]
Length = 138
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y + + Q+A+ +S +L KIL LVKAG++E+ G
Sbjct: 1 MKYSKATNYALHTMVYLTLTPKGKSVGVEQLAKIQNLSPTYLSKILTKLVKAGLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + + + + LDV+ A E + C H C + V+ +A
Sbjct: 61 VKGGYSIVSHSRKTSFLDVIHAIEGHTTLFHCSLEHDD--LQNEDCLIEKVMFEAEKKMK 118
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D L I + + S KK
Sbjct: 119 DELNTKYISDIAKEIDSTKK 138
>gi|298290870|ref|YP_003692809.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Starkeya novella DSM 506]
gi|296927381|gb|ADH88190.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
506]
Length = 149
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT R YG++ +++ A +IA+A I + FL IL L AG++ + +G
Sbjct: 2 LTNRGKYGLKAMLHLAAQPPGTSLGGQEIADANNIPKKFLDAILLDLRHAGMLRSRKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG L R D I + +++ + C + DC VGSC + + K +A
Sbjct: 62 GGYTLARSIDDIRVGHIIRVLDGPLAPIGCASKSAYVPCQDCRDVGSCAVRITMTKVRDA 121
Query: 118 FFDVLTQYSIECLV 131
+VL + S+ ++
Sbjct: 122 ISEVLDRMSLTDMM 135
>gi|218283509|ref|ZP_03489499.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989]
gi|218215777|gb|EEC89315.1| hypothetical protein EUBIFOR_02089 [Eubacterium biforme DSM 3989]
Length = 480
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR++ Y A HN S++++ I+ ++ KI + L A I+ G
Sbjct: 1 MQLKSSTDYAIRIVCYLATHNG-MISTSELSKQLYIATTYIPKIAKKLKDANIIVACEGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
+GG L + A+ I++ +++ EE+ + C C C + VL N +
Sbjct: 60 KGGYTLAKRAEDISLKEIISCMEETMAINRCLERDGF-CSRNAVNHCRVHKVLLDVQNTY 118
Query: 119 FDVLTQYSIECLVR 132
+ L + L+R
Sbjct: 119 NNKLENIKVSDLIR 132
>gi|163746291|ref|ZP_02153649.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Oceanibulbus indolifex HEL-45]
gi|161380176|gb|EDQ04587.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Oceanibulbus indolifex HEL-45]
Length = 153
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + + IAE +S +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPEGSLVSLGDIAERQSVSLPYLEQLFVKLRRAELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA I ++DV+ A +E+ A + LT+ + +
Sbjct: 61 PGGGYRLARPATDIRVVDVLAAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWQGLSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVDNE 136
>gi|312897950|ref|ZP_07757363.1| Rrf2 family protein [Megasphaera micronuciformis F0359]
gi|310620984|gb|EFQ04531.1| Rrf2 family protein [Megasphaera micronuciformis F0359]
Length = 173
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R+++Y A + + +AE I E FL KI++ L A I+++ RG
Sbjct: 32 MRLNQATDYAFRMVLYLATCPEGTKITGAALAEKQNIPERFLLKIMRSLTAADIMKSYRG 91
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNA 117
GG L R IT+ DV+ A E + C A C G C L + + N
Sbjct: 92 VEGGFALQRDPKDITLYDVIDAVEGQTQLQRCLADTDA-CTRGCGGMCSLYNAFEEIQND 150
Query: 118 FFDVLTQYSIECLVRNRSSI 137
L + L ++
Sbjct: 151 LAAKLKSVNFADLAAKEMAM 170
>gi|226308877|ref|YP_002768837.1| Rrf2 family DNA-binding protein [Rhodococcus erythropolis PR4]
gi|226187994|dbj|BAH36098.1| putative Rrf2 family DNA-binding protein [Rhodococcus erythropolis
PR4]
Length = 154
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 39/151 (25%), Positives = 71/151 (47%), Gaps = 13/151 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ + + + + P +++AE +S+ +L K L+ L AG+V GR
Sbjct: 1 MKLSGGVEWSLHCCVVLS-QAEGPVPTARLAELHGVSKTYLAKHLRALAHAGLVNPTEGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R ++IT+LDVV+A + + C A+ C +CG+ V+
Sbjct: 60 DGGYVLTRAPEKITVLDVVQAVDGTEPAFRCTEIRQQGILAAPPEQC--RSACGIAKVMA 117
Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIF 141
A A+ L+ +I L + +++KI
Sbjct: 118 DAEKAWRASLSGVTIADLAATLDLPALRKIL 148
>gi|307824109|ref|ZP_07654336.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
tundripaludum SV96]
gi|307734893|gb|EFO05743.1| transcriptional regulator, BadM/Rrf2 family [Methylobacter
tundripaludum SV96]
Length = 149
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY +L + A +I+ I+ + KIL+ LV A ++ + RG
Sbjct: 2 LRLSKLTDYATVILSFMAREKAQVRAAMEISTVTGIALPTVSKILKLLVNADVLISTRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L R ++I++ V+ A E + EC SH+ C C + +
Sbjct: 62 KGGYVLARMPEEISVAAVISALEGPIALTECSISHQ-GCEQASGCDILGNWSLINQTIHN 120
Query: 121 VLTQYSIECLVR 132
L ++ L+R
Sbjct: 121 ALESVTLADLIR 132
>gi|317051126|ref|YP_004112242.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
S5]
gi|316946210|gb|ADU65686.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
S5]
Length = 136
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 10/136 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ + YG+ ++Y A H D +I IA+ I + +L ++L L K G VE+ RG G
Sbjct: 4 VSSKGAYGLAAMLYLAQHADKLIQIRDIAKNGGIPQNYLEQLLVQLKKNGFVESTRGAGG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL ITI +++A E C + +D + L +V
Sbjct: 64 GYRLAMEPKDITIYQILEALEGEL----CANRYDVD-----NKALEFFWDDIRRKIQEVF 114
Query: 123 TQYSIECLVRNRSSIK 138
Q ++ LV ++
Sbjct: 115 GQ-TLADLVDLSEKME 129
>gi|118472493|ref|YP_885725.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
protein [Mycobacterium smegmatis str. MC2 155]
gi|118173780|gb|ABK74676.1| transcriptional regulator, BadM/Rrf2 family protein [Mycobacterium
smegmatis str. MC2 155]
Length = 153
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
MHLT+ TD G+R LM + D IA++ SE + K + LV+ G+V R
Sbjct: 1 MHLTRFTDLGLRTLMLLSAGESQDQRVTTRTIAKSANASEHHVAKAVSKLVEMGMVHARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L +I +V+ E V EC CPL+ +C L L +A AF
Sbjct: 61 GRVGGLELTEAGRTASIGRLVRELEGDREVIEC--GGAAPCPLIAACRLRRALAEAKEAF 118
Query: 119 FDVLTQYSIECL 130
+ L +Y++ L
Sbjct: 119 YRELDRYTVTDL 130
>gi|291037439|ref|ZP_06568403.1| transcriptional regulator BadM/Rrf2 [Gluconacetobacter xylinus NBRC
3288]
Length = 136
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 43/131 (32%), Positives = 64/131 (48%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ RTDY RVL++ A + D + I E IS L K++Q L AGIV+ RG
Sbjct: 1 MRLSLRTDYAFRVLIHLACNPDSRVTVRNITELHGISHNHLVKVVQHLCHAGIVQGTRGG 60
Query: 61 RGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+RL A I + +++ E E C +S C L +C ++ +A++AF
Sbjct: 61 TGGIRLAVSARNINVGHIMRLMETEKESPGACHSSGNNQCILGNACQFRHLIVQAVDAFM 120
Query: 120 DVLTQYSIECL 130
S+ L
Sbjct: 121 AFSDGMSLLDL 131
>gi|114768830|ref|ZP_01446456.1| Rrf2 family transcriptional regulator [alpha proteobacterium
HTCC2255]
gi|114549747|gb|EAU52628.1| Rrf2 family transcriptional regulator [alpha proteobacterium
HTCC2255]
Length = 153
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ AI + + +I++ IS +L ++ L + I+ +VRG
Sbjct: 1 MKLSTKGRYAMIALVDLAIEGEKGLVSLGEISDRQNISLNYLEQLFLKLRRKEIITSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG +L + A+ I + D++ A +E A + L++ +
Sbjct: 61 PGGGYKLAKSAEAIRVSDILTAVDEDMNALSKGAGVSGASSGTRAQSLSNRLWESLSAQV 120
Query: 119 FDVLTQYSIECLVRNR 134
F L + L+ N+
Sbjct: 121 FVYLHATRLSDLIENQ 136
>gi|149185219|ref|ZP_01863536.1| predicted transcriptional regulator [Erythrobacter sp. SD-21]
gi|148831330|gb|EDL49764.1| predicted transcriptional regulator [Erythrobacter sp. SD-21]
Length = 136
Score = 97.3 bits (241), Expect = 6e-19, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + + A H S++A + + K++ L AG++ +VRG
Sbjct: 1 MRLSNLADYAVVTMSQAARHCGGGRVSASELAAETGLPAPTVQKLVSKLTAAGLLRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG++L RPA IT+ D+V+A E + C DC + C +
Sbjct: 61 AGGGLQLARPAAAITLADIVEAVEGPIALTACIEGS--DCSVDHDCRVRPHWPLVNETLR 118
Query: 120 DVLTQYSIECLVRNRS 135
L S+ L + +
Sbjct: 119 SALAGISLVQLAQEKE 134
>gi|319948404|ref|ZP_08022545.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4]
gi|319437958|gb|EFV92937.1| Rrf2 family DNA-binding protein [Dietzia cinnamea P4]
Length = 152
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L++ +D +R LM A+ + + IAE+ S + KI+ LV+ G+ E+ R
Sbjct: 1 MQLSRSSDLALRALMRLAVADEREERMTAAVIAESVEASVSHVAKIVSRLVELGLAESRR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ + ++ +++ E V +C CPL G+CGL L A AF
Sbjct: 61 GRGGGLVITELGRHESVGRLLRRLEGPGEVVQC--EGPTPCPLAGNCGLRRALVDAREAF 118
Query: 119 FDVLTQYSIECLVR 132
F L +++ +VR
Sbjct: 119 FATLDPLTVDGIVR 132
>gi|198284912|ref|YP_002221233.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198249433|gb|ACH85026.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 162
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K ++Y ++ L+Y A P I++ + +L KILQ L K G++++ +G
Sbjct: 1 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L A Q+ ILD+++ E F C K C +C + + +
Sbjct: 61 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 119
Query: 120 DVLTQYSIECLVR 132
D+L + +I +
Sbjct: 120 DLLGRQTIASMAE 132
>gi|118619195|ref|YP_907527.1| putative transcriptional regulatory protein [Mycobacterium ulcerans
Agy99]
gi|118571305|gb|ABL06056.1| conserved hypothetical transcriptional regulatory protein
[Mycobacterium ulcerans Agy99]
Length = 161
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A + + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATTDSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RP I+I DV++ + + + LT V R +
Sbjct: 61 RDGGYELARPGTDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL + ++ +
Sbjct: 120 SVLEETTLADVA 131
>gi|256391950|ref|YP_003113514.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Catenulispora acidiphila DSM 44928]
gi|256358176|gb|ACU71673.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
acidiphila DSM 44928]
Length = 145
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ RTDY +RVL+ A + P IAE+ I FL +++ L AG+V + RG
Sbjct: 1 MRVSARTDYAVRVLIELAAADSRPVTCEAIAESQQIPYRFLKAVVRDLRVAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + R A +I + DVV+A + + P + GL D
Sbjct: 61 EGGYWIGREAAEIALADVVRAVDGELLTVNDVPPADVAYP-APAAGLGLFWLALGARVED 119
Query: 121 VLTQYSIECLVRN 133
+ SI L+
Sbjct: 120 LFGAVSIADLLNQ 132
>gi|158336452|ref|YP_001517626.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158306693|gb|ABW28310.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina
MBIC11017]
Length = 147
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ ++ + P ++ I++ + +L K+L L +AG+V +VRG
Sbjct: 1 MKLTTRGHYSVKALLDLSLQPNFGPASVNVISQRQSLPAPYLEKLLIELRQAGLVRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L RP QI++ +++A E+ ++ ++
Sbjct: 61 SKGGYQLARPPVQISLGHILEAVGETVEPF---TEKSAATQQAEDWVTLTLWKRLHQKLK 117
Query: 120 DVLTQYSIECL 130
+ L S+E L
Sbjct: 118 ESLYSISLEDL 128
>gi|330992748|ref|ZP_08316692.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329760226|gb|EGG76726.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 151
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 1/145 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ RTDY RVL++ A + D I I+ IS L K++ L G+V RGR
Sbjct: 5 MRLSLRTDYAFRVLIHLAANPDTRVTIRAISTLHRISHNHLMKVVHHLCLCGLVTGTRGR 64
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119
GG+ L P I + V++ E A L + L + +A++AF
Sbjct: 65 TGGIHLAMPPGHIMVGHVIRVMETQGEFMAGHAPSGDSRFLAADARPLRHLTARAMDAFM 124
Query: 120 DVLTQYSIECLVRNRSSIKKIFNAG 144
VL SI+ LV + ++ + AG
Sbjct: 125 AVLEDMSIQDLVGSPELVRSVCAAG 149
>gi|188582606|ref|YP_001926051.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
BJ001]
gi|179346104|gb|ACB81516.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
populi BJ001]
Length = 188
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 6/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+HL+ TDYG+R+LM + IA+ IS L KI Q LV+AG+VE +G
Sbjct: 19 LHLSLHTDYGLRLLMRLTLVEPGAWIATPTIAQRFGISVHHLQKIAQALVRAGVVEARQG 78
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGVRL + I + +V E V +C C L+ C L L A AFF
Sbjct: 79 RAGGVRLAQNPRDIRLGRLVAELEGVGTVVDCRRD---PCRLLSRCRLKWALDAAEQAFF 135
Query: 120 DVLTQYSIECLVRN--RSSIKKIFN 142
L + ++ + +++ +F+
Sbjct: 136 LELDRLTLADVAAGSTAAALGALFD 160
>gi|329934459|ref|ZP_08284538.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2
family [Streptomyces griseoaurantiacus M045]
gi|329306055|gb|EGG49910.1| transcriptional regulator of sulfate adenylyltransferase, Rrf2
family [Streptomyces griseoaurantiacus M045]
Length = 152
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A P IA + I FL ++ L +AG+V + RG
Sbjct: 1 MHISAKADYATRALLELAREPSRPLTCEAIASSQHIPFRFLKSVVGELRRAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA+ IT+LDV A + +D P S GL +V R+
Sbjct: 61 EGGYWLGRPAEAITLLDVAHAVDGELITLRGEPLTGLDYPGPAS-GLPAVWRRIEEEAAA 119
Query: 121 VLTQYSIECLV 131
+L ++ L+
Sbjct: 120 LLRSTTLTSLL 130
>gi|227874364|ref|ZP_03992548.1| possible transcription regulator [Oribacterium sinus F0268]
gi|227839772|gb|EEJ50218.1| possible transcription regulator [Oribacterium sinus F0268]
Length = 140
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +++++ A HN + +IA ISE +L I++ LVK ++ +RG
Sbjct: 1 MLISTKGQYALQLMVDLAEHNGQGYIPLKEIAARQDISEKYLESIVKVLVKKELLLALRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L RP + ++L+++ A E S + +G+C V ++
Sbjct: 61 KGGGYKLKRPVAEYSLLEILTALEGSLSPVSDLEKRRGS---LGACKTYPVWKELDRMIQ 117
Query: 120 DVLTQYSIECLV 131
+ + ++ L
Sbjct: 118 EYFQEKTLLELA 129
>gi|291551330|emb|CBL27592.1| rrf2 family protein (putative transcriptional regulator)
[Ruminococcus torques L2-14]
Length = 572
Score = 97.3 bits (241), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T TDY IR++ Y A + S++++ + ++ KI + L +AGI++ G
Sbjct: 1 MQITSTTDYAIRIVCYLAAQS-QMISTSELSQELSVPSSYIPKITKKLKQAGIIKACEGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAFF 119
+GG ++ + + I++ DV+ TE + ++ C C + +L N +
Sbjct: 60 KGGYQIAKQPENISLRDVISCTESTMAISRCLEKEGGCSKNYIACCKVHQILMDLQNIYN 119
Query: 120 DVLTQYSIECLVR 132
+ L I ++R
Sbjct: 120 NRLESVKISDIIR 132
>gi|183984102|ref|YP_001852393.1| putative transcriptional regulatory protein [Mycobacterium marinum
M]
gi|183177428|gb|ACC42538.1| conserved hypothetical transcriptional regulatory protein
[Mycobacterium marinum M]
Length = 161
Score = 96.9 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A + + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATADSGTVIKTEDLAQAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RP I+I DV++ + + + LT V R +
Sbjct: 61 RDGGYELARPGTDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL + ++ +
Sbjct: 120 SVLEETTLADVA 131
>gi|56696894|ref|YP_167256.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Ruegeria pomeroyi DSS-3]
gi|56678631|gb|AAV95297.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Ruegeria pomeroyi DSS-3]
Length = 152
Score = 96.9 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + I+E IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALTDIALQPADKLVTLGDISERQDISLPYLEQLFVKLRRADLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA I +++++ A +E+ A + LT+ +
Sbjct: 61 PGGGYRLARPASDIRVVEILAAVDETVNAMHKGAGASGASSGSRAQSLTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V+N
Sbjct: 121 YVFLHQTRLSDVVKN 135
>gi|161505130|ref|YP_001572242.1| transcriptional repressor NsrR [Salmonella enterica subsp. arizonae
serovar 62:z4,z23:-- str. RSK2980]
gi|160866477|gb|ABX23100.1| hypothetical protein SARI_03264 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 125
Score = 96.9 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 38/124 (30%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I D
Sbjct: 3 SLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L L KA+ +F L Y++ LV +
Sbjct: 63 VVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVRSFLKELDNYTLADLVEENQPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|58038586|ref|YP_190550.1| putative transcriptional regulator [Gluconobacter oxydans 621H]
gi|58001000|gb|AAW59894.1| Putative transcriptional regulator [Gluconobacter oxydans 621H]
Length = 160
Score = 96.9 bits (240), Expect = 7e-19, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K DY +L++ H + + +A + E + K+L+ L +G+V + RG
Sbjct: 2 LRLSKLADYATVLLVHLGRH-EGLATAAALAVETGVPEPTVAKLLKGLASSGLVLSHRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL + +T+ V+ A + + C +C CGL+ +A
Sbjct: 61 RGGYRLSSELETVTVATVIAAVDGPIAITACCDG--RECEHSSLCGLSGQWDVVNDAILK 118
Query: 121 VLTQYSIECLVRNRSSI 137
L ++ + R+ +
Sbjct: 119 TLNSITLADMGRHAERL 135
>gi|145595671|ref|YP_001159968.1| Rrf2 family transcriptional regulator [Salinispora tropica CNB-440]
gi|145305008|gb|ABP55590.1| transcriptional regulator, BadM/Rrf2 family [Salinispora tropica
CNB-440]
Length = 200
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 52/139 (37%), Gaps = 8/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-------NRISQIAEACCISELFLFKILQPLVKAGI 53
M L+ R DY +R + A QIA A I FL IL L + G+
Sbjct: 45 MRLSARVDYALRAVAELASATGGVSTGRGRFVTADQIARAQEIPPKFLESILLQLRRGGV 104
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
V+ RG GG L RPA +I++ +V++ + ++ L V
Sbjct: 105 VQAQRGPEGGYWLARPAGEISLAEVIRVIDGPLAHVRGQRPEQLGYHGAAR-ALQDVWIA 163
Query: 114 ALNAFFDVLTQYSIECLVR 132
+ +L ++ +
Sbjct: 164 LRASERQILELVTVADVAD 182
>gi|297624973|ref|YP_003706407.1| BadM/Rrf2 family transcriptional regulator [Truepera radiovictrix
DSM 17093]
gi|297166153|gb|ADI15864.1| transcriptional regulator, BadM/Rrf2 family [Truepera radiovictrix
DSM 17093]
Length = 165
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ Y + L + I+EA ++ +L +IL L GI+ + +G
Sbjct: 11 MRLSTTDIYAFQALGFLGTQPPGRWVGSDTISEATGVARPYLVRILAQLTAKGIIVSKKG 70
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTS-VLRKALNA 117
GG L R A I + DV++A + C + + C C S V + +A
Sbjct: 71 AGGGYALVREAHLINLRDVMRAIDGPVAPLSCVSLNWHVPCVEEARCHARSAVWERVRDA 130
Query: 118 FFDVLTQYSIECLVRN 133
L++ S+ L +
Sbjct: 131 LLTALSEVSVADLAAD 146
>gi|157147850|ref|YP_001455169.1| transcriptional repressor NsrR [Citrobacter koseri ATCC BAA-895]
gi|157085055|gb|ABV14733.1| hypothetical protein CKO_03654 [Citrobacter koseri ATCC BAA-895]
Length = 125
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ IS++ E +S + KI+ L +AG V +RG+ GG+RL +PA+ I I D
Sbjct: 3 SLPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPANVIVIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L L KA+ +F L Y++ LV +
Sbjct: 63 VVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|52840837|ref|YP_094636.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|148360750|ref|YP_001251957.1| rrf2 family transporter protein [Legionella pneumophila str. Corby]
gi|52627948|gb|AAU26689.1| rrf2 family protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|148282523|gb|ABQ56611.1| rrf2 family protein [Legionella pneumophila str. Corby]
Length = 153
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG V++Y A H+ IA ++ + KIL+ L AG++ +VRG
Sbjct: 2 LRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA +I++ ++ A EE EC DC L G C + R +A
Sbjct: 62 SGGYRLQRPAAEISVSQIIFALEEHRGFTECSMQP-NDCFLQGVCTIQGNWRLISHAIET 120
Query: 121 VLTQYSIECLVR 132
L S+E L +
Sbjct: 121 ALDSVSLEALAK 132
>gi|308071586|ref|YP_003873191.1| transcriptional regulator [Paenibacillus polymyxa E681]
gi|305860865|gb|ADM72653.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
Length = 132
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 7/133 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ TDY + ++Y + +D P + +A +S +L K++ LVKAG++++V G
Sbjct: 1 MKYSQATDYALHAMLYLVMSDSDKPIGVQMLAAKLNVSRTYLSKMMAQLVKAGLIQSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL + + I+ LDV++A E + + EC H C + V+ A
Sbjct: 61 VNGGYRLRQRGEDISFLDVIQAIEGTASLFECSLDHGT------KCLIQQVVFDAERQME 114
Query: 120 DVLTQYSIECLVR 132
D L I L++
Sbjct: 115 DYLRHKKIADLIK 127
>gi|85375385|ref|YP_459447.1| transcriptional regulator [Erythrobacter litoralis HTCC2594]
gi|84788468|gb|ABC64650.1| predicted transcriptional regulator [Erythrobacter litoralis
HTCC2594]
Length = 136
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + + + A H +++A + + K++ L AG++ +VRG
Sbjct: 1 MRLSNLADYAVVTMSHAARHCGGGRVSAAELAAETGLPVPTVQKVVSKLTAAGLLRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG++L RPA I + D+V+A E + C DC + +C + NA
Sbjct: 61 AGGGLQLARPAAAINVADIVEAVEGPIALTACIDG--TDCAVDHNCTVKPHWPLINNAMR 118
Query: 120 DVLTQYSIECLVRNRS 135
L + L +
Sbjct: 119 GALAGIPLTQLAAEKE 134
>gi|315638496|ref|ZP_07893673.1| rrf2 family protein [Campylobacter upsaliensis JV21]
gi|315481487|gb|EFU72114.1| rrf2 family protein [Campylobacter upsaliensis JV21]
Length = 133
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK ++Y + L+Y + + P + +A I + FL KILQ L + G++ + +G
Sbjct: 1 MLLTKASEYALLSLIYISSKS-TPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R T+ +++ A ++ V EC +C L SVL
Sbjct: 60 KGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGVCPS--QKENCHLLSVLVNLQQKID 117
Query: 120 DVLTQYSIECLVRNR 134
+ L ++E +++N
Sbjct: 118 NFLDSITLEDIIKNN 132
>gi|300821270|ref|ZP_07101418.1| Rrf2 family protein [Escherichia coli MS 119-7]
gi|300899716|ref|ZP_07117942.1| Rrf2 family protein [Escherichia coli MS 198-1]
gi|300922416|ref|ZP_07138536.1| Rrf2 family protein [Escherichia coli MS 182-1]
gi|300940665|ref|ZP_07155226.1| Rrf2 family protein [Escherichia coli MS 21-1]
gi|300949137|ref|ZP_07163179.1| Rrf2 family protein [Escherichia coli MS 116-1]
gi|300957838|ref|ZP_07170016.1| Rrf2 family protein [Escherichia coli MS 175-1]
gi|300987257|ref|ZP_07178086.1| Rrf2 family protein [Escherichia coli MS 45-1]
gi|300988644|ref|ZP_07178784.1| Rrf2 family protein [Escherichia coli MS 200-1]
gi|301023423|ref|ZP_07187206.1| Rrf2 family protein [Escherichia coli MS 69-1]
gi|301646624|ref|ZP_07246490.1| Rrf2 family protein [Escherichia coli MS 146-1]
gi|309796989|ref|ZP_07691389.1| Rrf2 family protein [Escherichia coli MS 145-7]
gi|300305877|gb|EFJ60397.1| Rrf2 family protein [Escherichia coli MS 200-1]
gi|300315469|gb|EFJ65253.1| Rrf2 family protein [Escherichia coli MS 175-1]
gi|300356727|gb|EFJ72597.1| Rrf2 family protein [Escherichia coli MS 198-1]
gi|300397010|gb|EFJ80548.1| Rrf2 family protein [Escherichia coli MS 69-1]
gi|300407734|gb|EFJ91272.1| Rrf2 family protein [Escherichia coli MS 45-1]
gi|300421235|gb|EFK04546.1| Rrf2 family protein [Escherichia coli MS 182-1]
gi|300451385|gb|EFK15005.1| Rrf2 family protein [Escherichia coli MS 116-1]
gi|300454553|gb|EFK18046.1| Rrf2 family protein [Escherichia coli MS 21-1]
gi|300526159|gb|EFK47228.1| Rrf2 family protein [Escherichia coli MS 119-7]
gi|301075171|gb|EFK89977.1| Rrf2 family protein [Escherichia coli MS 146-1]
gi|308119402|gb|EFO56664.1| Rrf2 family protein [Escherichia coli MS 145-7]
gi|315288459|gb|EFU47857.1| Rrf2 family protein [Escherichia coli MS 110-3]
gi|315293540|gb|EFU52892.1| Rrf2 family protein [Escherichia coli MS 153-1]
gi|315299059|gb|EFU58313.1| Rrf2 family protein [Escherichia coli MS 16-3]
gi|323171610|gb|EFZ57256.1| rrf2 family protein family protein [Escherichia coli LT-68]
gi|324005241|gb|EGB74460.1| Rrf2 family protein [Escherichia coli MS 57-2]
gi|324013821|gb|EGB83040.1| Rrf2 family protein [Escherichia coli MS 60-1]
Length = 125
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ IS++ + +S + KI+ L +AG V VRG+ GG+RL +PA I I D
Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L L KA+ +F L Y++ LV +
Sbjct: 63 VVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|282864294|ref|ZP_06273350.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE]
gi|282560781|gb|EFB66327.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces sp. ACTE]
Length = 143
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A P IA + I FL ++ L KAG+V + RG
Sbjct: 1 MHISAKADYATRALLELACEPGRPLTCEAIASSQGIPFRFLKSVVGELRKAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA+ IT+LDVV+A + +D P + L V R+
Sbjct: 61 EGGYWLGRPAEDITLLDVVRAVDGEVLTLRGEPLADLDYP-GPAHPLPGVWREVEARAAA 119
Query: 121 VLTQYSIECLVR 132
+L S+ L+
Sbjct: 120 LLGGQSLTALLA 131
>gi|260425936|ref|ZP_05779915.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
gi|260420428|gb|EEX13679.1| transcriptional regulator, BadM/Rrf2 family [Citreicella sp. SE45]
Length = 153
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 62/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + I++ +S +L ++ L +AG+V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIAMQPDGDLVTLGDISKRQDVSLPYLEQLFVKLRRAGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I ++D++ A +E+ A + LT+ + +
Sbjct: 61 PGGGYRLARPASEIRVVDILAAVDETVDAMHKGAGASGAASGSRAQSLTNRLWQSLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVIDN 135
>gi|86157269|ref|YP_464054.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter
dehalogenans 2CP-C]
gi|85773780|gb|ABC80617.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter
dehalogenans 2CP-C]
Length = 157
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K TDY I +L A + +A+ + + K+ + L KAG+V + RGR
Sbjct: 3 RLSKLTDYAIVILANLARAGEGTLTAQDLADRSKVPLPTVSKLCKELSKAGLVLSHRGRH 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAFF 119
GG L R AD I+I ++V+A E + C C L +C + A
Sbjct: 63 GGYGLARSADAISIAEIVEALEGPIALTSCVEPGAQPDACGLEATCPAKASWDPVSRAIQ 122
Query: 120 DVLTQYSIECLVRNRSS 136
L + +V S+
Sbjct: 123 GALRGLPLSSIVLQHSN 139
>gi|54296620|ref|YP_122989.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris]
gi|53750405|emb|CAH11799.1| hypothetical protein lpp0651 [Legionella pneumophila str. Paris]
Length = 153
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG V++Y A H+ IA ++ + KIL+ L AG++ +VRG
Sbjct: 2 LRVSKLADYGTVVMVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA +I++ V+ A EE EC DC L G C + R +A
Sbjct: 62 SGGYRLQRPAAEISVSQVIFALEEHRGFTECSMQP-NDCFLQGVCTIQGNWRLISHAIET 120
Query: 121 VLTQYSIECLVR 132
L S+E L +
Sbjct: 121 ALDSVSLEALAK 132
>gi|291286176|ref|YP_003502992.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
gi|290883336|gb|ADD67036.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
Length = 154
Score = 96.9 bits (240), Expect = 8e-19, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 6/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +T Y ++ L Y A HN IS IAE I + FL IL L G + + G+
Sbjct: 2 FSMKTVYALKALQYLAESHNQGNVMISVIAENEGIPKKFLETILLTLKNEGFLTSRIGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF-----ASHKIDCPLVGSCGLTSVLRKALN 116
GG +L ++I + D++ A E + + C C CG +L K
Sbjct: 62 GGYKLALAPNEINLKDIISALEGNIALIPCAVHETGEKKCDQCRDYELCGTRLILTKISE 121
Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
DVL+ ++ ++ ++
Sbjct: 122 RLADVLSSNTLADMIGETEKARQ 144
>gi|325962157|ref|YP_004240063.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Arthrobacter phenanthrenivorans Sphe3]
gi|323468244|gb|ADX71929.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
phenanthrenivorans Sphe3]
Length = 149
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + D +R LM A + IA++ + K + L G+++ VRG
Sbjct: 1 MKINAFADVSLRALMVLAAAPEGALLTTQNIADSVGTPYNHVSKAMAKLRSLGLIDVVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L T+ V++ + A+C A +CPL+ C L S L +A AF+
Sbjct: 61 RTGGSSLSHAGRYATVGQVLRQLDTRTDAADCVAPGG-NCPLINECKLRSALARAREAFY 119
Query: 120 DVLTQYSIECL 130
L I L
Sbjct: 120 RELDSVVIADL 130
>gi|325971575|ref|YP_004247766.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Spirochaeta sp. Buddy]
gi|324026813|gb|ADY13572.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy]
Length = 135
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ + Y ++ ++Y A + I I+EA IS +L +++ PL +AG+V+ RG
Sbjct: 1 MKLSTKGRYSLQTMVYLATCREN-CSIRSISEATGISSGYLEQLMIPLRRAGLVQAERGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL + IT +V+ A+E F C +CP +C + + D
Sbjct: 60 QGGYRLAK--SGITCAEVLSASEGDFEPVPCR-----NCPRTDACKTHQIWTMLQSTVVD 112
Query: 121 VLTQYSIECLVRN 133
+Q +I+ L +
Sbjct: 113 FTSQVTIDELASH 125
>gi|257065317|ref|YP_003144989.1| rrf2 family protein, putative transcriptional regulator [Slackia
heliotrinireducens DSM 20476]
gi|256792970|gb|ACV23640.1| rrf2 family protein, putative transcriptional regulator [Slackia
heliotrinireducens DSM 20476]
Length = 136
Score = 96.9 bits (240), Expect = 9e-19, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R L+ A H D + +AE +S+ +L +I+ L +GI++ RG
Sbjct: 1 MLVSTKGRYALRFLLDLAQHKDAGVISLQAVAERQNVSKKYLERIVSLLSPSGILKITRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R + IT+ +++ TE F +CP A
Sbjct: 61 YQGGYQLARDPELITVAEILMLTEGGFSPVPI--DEARECPASAF-----AWESLEGAIT 113
Query: 120 DVLTQYSIECLVRNRSSI 137
L +++ ++ + +
Sbjct: 114 RCLENITLQDILDHSDPV 131
>gi|300021837|ref|YP_003754448.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Hyphomicrobium denitrificans ATCC 51888]
gi|299523658|gb|ADJ22127.1| transcriptional regulator, BadM/Rrf2 family [Hyphomicrobium
denitrificans ATCC 51888]
Length = 165
Score = 96.5 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 45/137 (32%), Positives = 74/137 (54%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T + IR+L+ C + ND +++ +++ +++ +FKI+ L AG + VRG
Sbjct: 1 MRLTKQTGHAIRILIDCTLANDELVKVADVSDRLGVTKQNVFKIVHILSHAGFLSAVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +PA I I DVV+A E + E K + ++ AL+AF
Sbjct: 61 NGGVRLAKPATSIKIGDVVRAIEVTRVQVEGGRGRKT--VDNDPASINAMFDDALSAFIS 118
Query: 121 VLTQYSIECLVRNRSSI 137
VL Q+++ L +S +
Sbjct: 119 VLDQHTLAELASQKSPL 135
>gi|297245670|ref|ZP_06929535.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A8796]
gi|297177321|gb|EFH36573.1| HTH-type transcriptional regulator cymR [Staphylococcus aureus
A8796]
Length = 140
Score = 96.5 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++I+ D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESELP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQYSIECLVR 132
DVL +++ L
Sbjct: 113 DVLDNTTLKYLAE 125
>gi|325676175|ref|ZP_08155855.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
33707]
gi|325552959|gb|EGD22641.1| BadM/Rrf2 family transcriptional regulator [Rhodococcus equi ATCC
33707]
Length = 148
Score = 96.5 bits (239), Expect = 9e-19, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT+ TD G+R++M A P +AE +S K++ L + G+V T
Sbjct: 1 MQLTQFTDLGLRIVMRLATDPAGSGGP-STRAVAEQLAVSYTHATKVVARLSELGVVTTR 59
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RGR GG+ + ++ + + E V C CPL C L S LR A +A
Sbjct: 60 RGRGGGLAITDLGRTASVGWLTRQLEGDGEVVTC--EGDKPCPLRRGCRLRSSLRVAQDA 117
Query: 118 FFDVLTQYSIECLVR 132
F+ L ++ L
Sbjct: 118 FYTALDAMTVRDLAA 132
>gi|326404674|ref|YP_004284756.1| FeS assembly transcriptional regulator [Acidiphilium multivorum
AIU301]
gi|325051536|dbj|BAJ81874.1| FeS assembly transcriptional regulator [Acidiphilium multivorum
AIU301]
Length = 152
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 1/128 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ TDY + VL+ A IA I E + K+L+ L ++G+V + RG G
Sbjct: 1 MSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGAHG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL RP I I DV+ A + + C C C + +A D L
Sbjct: 60 GYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGSCDSASLCPMAGRWGVVNDAISDAL 119
Query: 123 TQYSIECL 130
S++ +
Sbjct: 120 NAISLDDM 127
>gi|326387606|ref|ZP_08209212.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
gi|326207652|gb|EGD58463.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
nitrogenifigens DSM 19370]
Length = 150
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T Y IR L + A R+ IAEA I FL IL + + GIV + RGR
Sbjct: 2 LSQKTRYTIRALQHLADAFGQGSVRLDAIAEAQNIPRKFLTVILSEMAREGIVISQRGRD 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L P I D+++ S + C + +C C L ++ + +
Sbjct: 62 GGYELALPPVDIRYGDIIRLCRGSLALVPCASRNAHETCANCLPEEECRLRGLMLQLRDE 121
Query: 118 FFDVLTQYSIEC 129
+L + ++
Sbjct: 122 TAAILDRITLAD 133
>gi|313898036|ref|ZP_07831575.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
HGF2]
gi|312957064|gb|EFR38693.1| putative HTH-type transcriptional regulator CymR [Clostridium sp.
HGF2]
Length = 130
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ Y R L+ AI+ D+P I++I ISE +L I L KAG + + RG
Sbjct: 1 MKLSTKSRYAARCLIDLAIYGKDHPLSITEIGAREEISERYLELIFATLKKAGFIASARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L RP + ITI D++ E + + + + V +
Sbjct: 61 SQGGYQLIRPIESITIYDIIALMETNTSIVNTQDERDP----MKRILMREVWSLIDDNLK 116
Query: 120 DVLTQYSIECL 130
L+ +I L
Sbjct: 117 AYLSDLTIAEL 127
>gi|256827284|ref|YP_003151243.1| rrf2 family protein, putative transcriptional regulator
[Cryptobacterium curtum DSM 15641]
gi|256583427|gb|ACU94561.1| rrf2 family protein, putative transcriptional regulator
[Cryptobacterium curtum DSM 15641]
Length = 170
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+R DY R+L H D +++I+E I F I LV+AG V TVRG
Sbjct: 1 MELTRRCDYACRILRSAYRHRDRFVSVAEISEEEEIPYAFARTIQHDLVQAGYVRTVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG++L Q+T+LDV+ A + V+ C A + C C + + A
Sbjct: 61 HGGLQLAIDLSQVTVLDVLHALQGEVTVSACAADPQ-SCSKSEGCRFNQLWQVADKMLNT 119
Query: 121 VLTQYSIECL 130
+ ++ +
Sbjct: 120 LFDSVTLSDM 129
>gi|320105376|ref|YP_004180966.1| BadM/Rrf2 family transcriptional regulator [Terriglobus saanensis
SP1PR4]
gi|319923897|gb|ADV80972.1| transcriptional regulator, BadM/Rrf2 family [Terriglobus saanensis
SP1PR4]
Length = 164
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 65/143 (45%), Gaps = 12/143 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-----------NDYPNRISQIAEACCISELFLFKILQPLV 49
+ LTK+ DYG+ L Y A + IAEA I L KILQ L
Sbjct: 2 LRLTKKADYGLMALKYLAEQAVAAAEHPESVPAHAQSAKDIAEAYHIPPQLLAKILQTLA 61
Query: 50 KAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
+AGI+ + G GG L R A +IT +V++A + F+ C C L G C +
Sbjct: 62 RAGILVSHAGTNGGYSLARSATEITAFEVIRAIDGPLFITSCIT-IHGTCDLAGHCTIKE 120
Query: 110 VLRKALNAFFDVLTQYSIECLVR 132
LRK ++ D+L+ I LV
Sbjct: 121 PLRKVNDSIKDLLSGIRISDLVD 143
>gi|126643101|ref|YP_001086085.1| hypothetical protein A1S_3086 [Acinetobacter baumannii ATCC 17978]
Length = 144
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
MY A +D P I++IA+ +S+ L K++ + K + T+RG+ GG+RL A +
Sbjct: 1 MYVARPSDAPYTIAEIAQDLYVSQNHLVKVVHFMGKQEWIITIRGKGGGIRLNPKALDLK 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ +V+ + + EC + C L CGL +L +AL +F+ L QY++ +++
Sbjct: 61 LGTIVRILQGDHQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQYTLGEVLQQP 117
Query: 135 SS 136
S
Sbjct: 118 KS 119
>gi|163736408|ref|ZP_02143827.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
gallaeciensis BS107]
gi|163741057|ref|ZP_02148449.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Phaeobacter gallaeciensis 2.10]
gi|161385410|gb|EDQ09787.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Phaeobacter gallaeciensis 2.10]
gi|161390278|gb|EDQ14628.1| transcriptional regulator, BadM/Rrf2 family protein [Phaeobacter
gallaeciensis BS107]
Length = 152
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + + I++ IS +L ++ L ++G+V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPEGSLVVLGDISKRQDISLPYLEQLFVKLRRSGLVVSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL P I ++DV+ A +E+ + +
Sbjct: 61 PGGGYRLAHPPSDIRVVDVLSAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVIEN 135
>gi|197106347|ref|YP_002131724.1| conserved predicted transcriptional regulator [Phenylobacterium
zucineum HLK1]
gi|196479767|gb|ACG79295.1| conserved predicted transcriptional regulator [Phenylobacterium
zucineum HLK1]
Length = 145
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/131 (33%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++R+ Y +R L++ A + P I++IAEA FL IL L + ++ + RGR
Sbjct: 2 LSQRSRYALRALVHLAGRTDGRPAAIAEIAEAAATPRKFLEAILLELKRRQLLVSTRGRF 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPA +I+ DV++A + +A C + CP V C + L KA +A
Sbjct: 62 GGYRLARPASEISFADVIRALDGPLALAPCASKTAYRPCETCPTVEDCPVHPALAKARDA 121
Query: 118 FFDVLTQYSIE 128
VL +++E
Sbjct: 122 VAAVLETWTLE 132
>gi|322437255|ref|YP_004219467.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
MP5ACTX9]
gi|321164982|gb|ADW70687.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
MP5ACTX9]
Length = 163
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 44/145 (30%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---------NDYPNRISQIAEACCISELFLFKILQPLVKA 51
+ LTK+ DYG+ L Y A ++Y IAEA I L KILQ L K
Sbjct: 2 LRLTKKADYGLMALKYLAEQAAATSGNAAHNYAQSAKDIAEAYHIPPQLLAKILQTLAKG 61
Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
G++ + G GG L R A +I+ +V++A + F+ C C L C + L
Sbjct: 62 GLLVSHAGTNGGYALARSAAEISAFEVIRAIDGPLFITSCIT-IHGTCDLDSHCTIKEPL 120
Query: 112 RKALNAFFDVLTQYSIECLVRNRSS 136
RK ++ D+L+ I L+ +
Sbjct: 121 RKVNDSIKDLLSAIRIADLIDPADA 145
>gi|153006770|ref|YP_001381095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152030343|gb|ABS28111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
Fw109-5]
Length = 200
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 1 MHLTKRT---DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M + +Y + L+ A+ ++ P + +A + E FL K+ L KAG+VE
Sbjct: 1 MKSSLYGAGAEYALHSLLILAVRSE-PVSVRDLARFQDLPERFLAKLFTRLQKAGLVEAT 59
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG L RPA +I + DV++A + + + EC F + + G C +
Sbjct: 60 EGVRGGFALARPAARIAVRDVLEAVDPNRTLFECAEIRRHCALFGAEPPAWSISGMCRIH 119
Query: 109 SVLRKALNAFFDVLTQYSIECL 130
+++A A L ++ L
Sbjct: 120 LFMKEAEGALQGFLASKTLADL 141
>gi|323485134|ref|ZP_08090486.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum
WAL-14163]
gi|323401564|gb|EGA93910.1| hypothetical protein HMPREF9474_02237 [Clostridium symbiosum
WAL-14163]
Length = 146
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R ++Y A + + ++I EA ++++F+ K+L+ L AG+V + G
Sbjct: 1 MQLTMTTDYALRCMLYLAG-KEGLSSSTEIGEAVGLNKIFVQKVLRILRDAGLVTSTHGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL + A +I +LD++ E++ + C + C +C + +
Sbjct: 60 TGGYRLAKRAKEIVLLDIILLFEKTMKINRCLEPDGL-CKRNEACPMHVYYEELQMTLES 118
Query: 121 VLTQYSIECLVRNRSSIKK 139
+ +++ ++ + K+
Sbjct: 119 FFGRDTLQDVIDYGKNKKR 137
>gi|228908509|ref|ZP_04072350.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
gi|228851156|gb|EEM95969.1| Transcriptional regulator [Bacillus thuringiensis IBL 200]
Length = 133
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + +AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTMLFLAKATPNKLVSVHHLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + I+ LD++ A E + +C K C + + A
Sbjct: 61 PKGGYSLSNKWEDISFLDIIHAIEGKTSLFDCCLHDKPGC------LINEAMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVDLAQK 128
>gi|149193764|ref|ZP_01870862.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter
mediatlanticus TB-2]
gi|149135717|gb|EDM24195.1| transcriptional regulator, BadM/Rrf2 family protein [Caminibacter
mediatlanticus TB-2]
Length = 134
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK T Y ++ L+ + + D P ++ I+E I + FL K+LQ L + G V + +G
Sbjct: 1 MLFTKSTAYALQALIELSKY-DKPIDVTTISEKTAIPKPFLAKLLQNLSRNGFVYSFKGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
GG L + +I +LD+ K E+ + + K DC C L K +
Sbjct: 60 NGGFVLAKNPKEIKLLDIFKNIEDKDTLVFYCSKSKDDCTRNRGSICELQPFFEKMEDEI 119
Query: 119 FDVLTQYSIECLVRN 133
+L +Y++ +RN
Sbjct: 120 AIILDKYTLADFIRN 134
>gi|296447784|ref|ZP_06889698.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
gi|296254703|gb|EFH01816.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
Length = 144
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+ + YG++ L++ A IA+ I FL IL L AGI+ + +G+ G
Sbjct: 2 LSNKAKYGLKALIHLAGAEGQ-CLAGDIAKENNIPRKFLDAILVELRNAGIINSKKGKHG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G L RPA+++T+ +++ + C + DCP +C + ++ +
Sbjct: 61 GYLLARPAEKVTVGQIIRILDGPLAPIACASKTAYQRCADCPDEDACAIHDIMLDVRESI 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
+L + SI L S ++
Sbjct: 121 ALILDRTSIASLRERGSREARVLR 144
>gi|116624954|ref|YP_827110.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116228116|gb|ABJ86825.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
usitatus Ellin6076]
Length = 141
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 62/145 (42%), Gaps = 10/145 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH + + +Y ++ + A + P RI+ IA+ I + FL IL L +AG VE+ RG
Sbjct: 1 MHTSVKGEYALQAIFDLASQRSGEPIRIADIAQRQKIPQKFLELILASLKQAGFVESRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPAD +T+ +V++ E + + + + A
Sbjct: 61 AEGGYLLSRPADSLTVGEVLRYVEGP-------QGKSRKGRKGPATPFSDMWEQVDAAVS 113
Query: 120 DVLTQYSIECLVR--NRSSIKKIFN 142
V+ + + L R K + N
Sbjct: 114 SVIDKTTFADLQRAWQEQQNKYVLN 138
>gi|325102879|ref|YP_004272533.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
gi|324971727|gb|ADY50711.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
Length = 145
Score = 96.5 bits (239), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y +R + + A D I +IA+ E FL KILQ L + GIV + +G
Sbjct: 4 FSKTCEYAMRAVFFIAYKTSEDKKVGIKEIAQGINSPEHFLAKILQDLSRKGIVLSAKGP 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + + ++V+A + C C C + +K N
Sbjct: 64 NGGFYMDSITLKQPLSNIVEAIDGDKIFVGCGLGLNY-CSESNPCPIHHEFKKIRNDIIK 122
Query: 121 VLTQYSI----ECLVRNRSSIKK 139
+L +I E L+ S++KK
Sbjct: 123 MLKNTTIEDFNEDLILGNSTLKK 145
>gi|238060186|ref|ZP_04604895.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
39149]
gi|237881997|gb|EEP70825.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
39149]
Length = 170
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 53/138 (38%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-------NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
M L+ R DY +R A P QIA+A I FL IL L + GI
Sbjct: 15 MRLSARVDYALRATAELAAVADDAGAARSRPVTAEQIAKAQGIPPKFLESILLQLRRGGI 74
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
V RG GG L RPA +I++ +V++ + ++ L V
Sbjct: 75 VHAQRGPEGGYWLARPAAEISLAEVIRVIDGPLAHVRGQRPEQLGYQGAAQ-ALQDVWIA 133
Query: 114 ALNAFFDVLTQYSIECLV 131
+ ++L ++ +
Sbjct: 134 LRASEREILDLVTVADVA 151
>gi|57242644|ref|ZP_00370581.1| rrf2 family protein (putative transcriptional regulator)
superfamily [Campylobacter upsaliensis RM3195]
gi|57016573|gb|EAL53357.1| rrf2 family protein (putative transcriptional regulator)
superfamily [Campylobacter upsaliensis RM3195]
Length = 133
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK ++Y + L+Y + + P + +A I + FL KILQ L + G++ + +G
Sbjct: 1 MLLTKASEYALLSLIYISSKS-TPCDVDTMATELEIPKSFLAKILQNLARDGLLHSYKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L R T+ +++ A ++ V EC +C L SVL
Sbjct: 60 RGGFSLVREPKAYTLKEILASAEKKEVSVFECSGGVCPS--QKENCHLLSVLVNLQQKID 117
Query: 120 DVLTQYSIECLVRNR 134
+ L ++E ++ N
Sbjct: 118 NFLDSITLEDIINNN 132
>gi|258516089|ref|YP_003192311.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
acetoxidans DSM 771]
gi|257779794|gb|ACV63688.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
acetoxidans DSM 771]
Length = 143
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 63/144 (43%), Gaps = 5/144 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + TDY R + Y ++ IAE I FL KI L+KAGIVE+ RG
Sbjct: 1 MKINQATDYAFRAVFYLSLLPRGQVVEAKLIAEDENIPTRFLLKIFPQLIKAGIVESQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAF 118
RGG L + +IT+ DV++A E V C + + C + L
Sbjct: 61 NRGGYSLAKKPAEITLKDVLEAVEGPVMVNRCLLSPEGCNKNHTAICPIHQALLNIQQTM 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
L +Y E L +++ K+ +
Sbjct: 121 NTELEKYDFETL---KNNYKQHLS 141
>gi|258542739|ref|YP_003188172.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256633817|dbj|BAH99792.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-01]
gi|256636876|dbj|BAI02845.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-03]
gi|256639929|dbj|BAI05891.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-07]
gi|256642985|dbj|BAI08940.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-22]
gi|256646040|dbj|BAI11988.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-26]
gi|256649093|dbj|BAI15034.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-32]
gi|256652080|dbj|BAI18014.1| transcriptional regulator [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256655137|dbj|BAI21064.1| transcriptional regulator [Acetobacter pasteurianus IFO 3283-12]
Length = 154
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L++ DY I +L+ + +A + E + K+L+ L G V + RG
Sbjct: 2 LKLSRLADYAIVILVKLGEQ-EGVVTSPTLAAITGVPEPTVAKVLKVLSAHGFVLSQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL RP I++ V+ A + + C +C SCGL A
Sbjct: 61 KGGYRLARPLADISVASVITAVDGKIALTACVDGG--ECDTGVSCGLCGSWDTINQAIRT 118
Query: 121 VLTQYSIECL 130
L S+E +
Sbjct: 119 TLEGISLESM 128
>gi|163790053|ref|ZP_02184488.1| transcriptional regulator [Carnobacterium sp. AT7]
gi|159874753|gb|EDP68822.1| transcriptional regulator [Carnobacterium sp. AT7]
Length = 137
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A+ ++ R+ +A+ IS +L KIL L KAG++ + G
Sbjct: 1 MKYSKATNYALHSMVHLAMESNNEAVRVEDLAKHQRISPTYLSKILTKLAKAGLITSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL ++ T LD+++A E + C SH C + + A +
Sbjct: 61 VKGGYRLLLSPEKCTFLDIIQAIEGQESLLNCTMSHDGKWNR--DCLIERAVADAEDKMK 118
Query: 120 DVLTQYSIECLVRN 133
D L +I ++
Sbjct: 119 DELAHKTIAGILNQ 132
>gi|253681092|ref|ZP_04861895.1| Rrf2 family protein [Clostridium botulinum D str. 1873]
gi|253562941|gb|EES92387.1| Rrf2 family protein [Clostridium botulinum D str. 1873]
Length = 139
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +R+++Y I+E I FL KIL+ L +AGIVE+ RG
Sbjct: 1 MKITQEVDYALRIVLYLCKLGFGEKIEAKFISEHENIPIRFLLKILRKLKQAGIVESFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + I+ D++ A + ++ C + C + + L
Sbjct: 61 INGGYALNKYPSDISFKDIILAIDGPIYMNRCLYDPKSCNLNRANKCVVHNALASVQTTL 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
L + + L+ +
Sbjct: 121 IRKLESITFKNLLDEEYKL 139
>gi|296132372|ref|YP_003639619.1| transcriptional regulator, BadM/Rrf2 family [Thermincola sp. JR]
gi|296030950|gb|ADG81718.1| transcriptional regulator, BadM/Rrf2 family [Thermincola potens JR]
Length = 134
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH+ + TDY R +++ A IA I FL KI+ L+KAGIV++ RG
Sbjct: 1 MHINQATDYAFRAVLFLAQQPKGKVVEAQVIARKEVIPMRFLLKIMPSLIKAGIVKSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
GG L + I+ LDVV A E + C + C + L
Sbjct: 61 VGGGYYLAKDPRDISFLDVVTAIEGPVAINRCLIDPEYCSKKGPPGCKVHRALDGIQKKL 120
Query: 119 FDVLTQYSIECLVR 132
++ L ++ L+
Sbjct: 121 YNELKNHNFGNLIN 134
>gi|218665081|ref|YP_002427593.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|218517294|gb|ACK77880.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 175
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K ++Y ++ L+Y A P I++ + +L KILQ L K G++++ +G
Sbjct: 14 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLHVPAQYLAKILQDLAKRGVLDSFKG 73
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L A Q+ ILD+++ E F C K C +C + + +
Sbjct: 74 RGGGFVLRPGAGQMNILDIIEIVEGQPFGQGCVLGLKA-CADETACPVHTQWKPLKAEVI 132
Query: 120 DVLTQYSIECLVR 132
D+L + +I +
Sbjct: 133 DLLGRQTIASMAE 145
>gi|160872032|ref|ZP_02062164.1| FeS assembly SUF system regulator [Rickettsiella grylli]
gi|159120831|gb|EDP46169.1| FeS assembly SUF system regulator [Rickettsiella grylli]
Length = 157
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY + ++ Y + H +IAE I+ K+L+ L G++ RG
Sbjct: 2 LRLSKLTDYAVVIMAYLSQHPGLAINAKKIAERTGIALPTTSKLLKHLTHRGLLHANRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG L PA I++ +++ E + EC + C C + R+
Sbjct: 62 RGGYLLAYPAADISLGTLIQTLEGPIALTEC-SHRTRTCRFAQQCTIRDNWRRISAFIQM 120
Query: 121 VLTQYSIECLVR 132
S+ L++
Sbjct: 121 TFMHISLADLIQ 132
>gi|57167906|ref|ZP_00367046.1| rrf2 family protein (putative transcriptional regulator)
superfamily [Campylobacter coli RM2228]
gi|305432068|ref|ZP_07401235.1| rrf2 family protein [Campylobacter coli JV20]
gi|57021028|gb|EAL57692.1| rrf2 family protein (putative transcriptional regulator)
superfamily [Campylobacter coli RM2228]
gi|304445152|gb|EFM37798.1| rrf2 family protein [Campylobacter coli JV20]
Length = 136
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L+Y A H + P + +A I + FL KILQ L K ++++ +G
Sbjct: 1 MLFTKASEYALLSLIYIA-HKENPQDVDSLALELNIPKSFLAKILQTLAKDNLLKSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + Q +I ++V A ++ V EC + +C L +L N
Sbjct: 60 KGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGVCPN-NKEENCTLMPMLVNLQNKVD 118
Query: 120 DVLTQYSIECLVRNR 134
+ L ++ ++ +
Sbjct: 119 EFLDSLTLADIMNHN 133
>gi|319762538|ref|YP_004126475.1| transcriptional regulator, rrf2 family [Alicycliphilus
denitrificans BC]
gi|330824556|ref|YP_004387859.1| BadM/Rrf2 family transcriptional regulator [Alicycliphilus
denitrificans K601]
gi|317117099|gb|ADU99587.1| transcriptional regulator, Rrf2 family [Alicycliphilus
denitrificans BC]
gi|329309928|gb|AEB84343.1| transcriptional regulator, BadM/Rrf2 family [Alicycliphilus
denitrificans K601]
Length = 180
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R + + A+H+ +P + I+ IS +L I L +AG+V +VRG
Sbjct: 1 MRLTTRGKLAVTAITDVALHSHGHPVALPGISVRQGISLSYLEDIFSALRRAGLVHSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP +++ ++V A+E+ A A + P + +
Sbjct: 61 PGGGYMLTRPPQSLSVAEIVMASEKYMAHANDKAGNAAPSPSSDD-MTADLWASFHSRIL 119
Query: 120 DVLTQYSIECLVRNRS 135
+ L ++ L+
Sbjct: 120 EYLQSITVADLLAQHR 135
>gi|289550608|ref|YP_003471512.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis
HKU09-01]
gi|315658103|ref|ZP_07910975.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis
M23590]
gi|289180140|gb|ADC87385.1| Iron-sulfur cluster regulator IscR [Staphylococcus lugdunensis
HKU09-01]
gi|315496432|gb|EFU84755.1| Rrf2 family transcriptional regulator [Staphylococcus lugdunensis
M23590]
Length = 140
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IA +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCVSLKSIAAENSLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++IT D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPAEEITAGDIIRLLEGPITFVESIESEPP--------AQKQLWLRMRDAVR 112
Query: 120 DVLTQYSIECLVR 132
DVL +++ L
Sbjct: 113 DVLDNTTLKYLAD 125
>gi|329114662|ref|ZP_08243421.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum
DM001]
gi|326696142|gb|EGE47824.1| BadM/Rrf2 Family Transcriptional Regulator [Acetobacter pomorum
DM001]
Length = 160
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 53/130 (40%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L++ DY I +L+ + +A + E + K+L+ L G V + RG
Sbjct: 8 LKLSRLADYAIVILVKLGEQ-EGVVTSPTLAAITGVPEPTVAKVLKVLSAHGFVLSQRGA 66
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG RL R I++ V+ A + + C +C SCGL A
Sbjct: 67 KGGYRLARHLADISVASVITAVDGKIALTACVDGG--ECDTGVSCGLCGSWDTINQAIRT 124
Query: 121 VLTQYSIECL 130
L S+E +
Sbjct: 125 TLEGISLESM 134
>gi|300816522|ref|ZP_07096743.1| Rrf2 family protein [Escherichia coli MS 107-1]
gi|300906007|ref|ZP_07123731.1| Rrf2 family protein [Escherichia coli MS 84-1]
gi|300929285|ref|ZP_07144761.1| Rrf2 family protein [Escherichia coli MS 187-1]
gi|301302595|ref|ZP_07208725.1| Rrf2 family protein [Escherichia coli MS 124-1]
gi|301325941|ref|ZP_07219362.1| Rrf2 family protein [Escherichia coli MS 78-1]
gi|300402174|gb|EFJ85712.1| Rrf2 family protein [Escherichia coli MS 84-1]
gi|300462778|gb|EFK26271.1| Rrf2 family protein [Escherichia coli MS 187-1]
gi|300530752|gb|EFK51814.1| Rrf2 family protein [Escherichia coli MS 107-1]
gi|300842120|gb|EFK69880.1| Rrf2 family protein [Escherichia coli MS 124-1]
gi|300847294|gb|EFK75054.1| Rrf2 family protein [Escherichia coli MS 78-1]
gi|315255522|gb|EFU35490.1| Rrf2 family protein [Escherichia coli MS 85-1]
gi|324019356|gb|EGB88575.1| Rrf2 family protein [Escherichia coli MS 117-3]
Length = 125
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ IS++ + +S + KI+ L +AG V VRG+ GG+RL + A I I D
Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L L KA+ +F L Y++ LV +
Sbjct: 63 VVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|217979263|ref|YP_002363410.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
silvestris BL2]
gi|217504639|gb|ACK52048.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
silvestris BL2]
Length = 144
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+ + YG++ L++ A+ + P + IA I FL IL L KAGI+ + +G+ G
Sbjct: 2 LSNKGKYGLKALIHLAVF-EGPCLAADIAAHNQIPRKFLDAILLELRKAGILNSKKGKGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAF 118
G L RPAD+IT +++ + C + +DCP +C + ++ ++
Sbjct: 61 GYHLARPADKITAGQIIRILDGPLAPIACASRTAYRKCLDCPDEEACAVRDLMLDVRDSM 120
Query: 119 FDVLTQYSIECLVR--NRSSI 137
+L + SI L + NR ++
Sbjct: 121 ALILDRTSIAALSKRGNRDNL 141
>gi|154483669|ref|ZP_02026117.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC
27560]
gi|149735579|gb|EDM51465.1| hypothetical protein EUBVEN_01373 [Eubacterium ventriosum ATCC
27560]
Length = 147
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 67/131 (51%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+L+K++ YG+ L+ +IH+ + IAE IS +L I L +AGI+++++G
Sbjct: 1 MNLSKKSRYGLTALIDLSIHSTKGHVSLISIAERNGISPQYLEHIFASLRRAGIIKSIKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L +IT+ +++A + ++ + E + + P + ++ K +
Sbjct: 61 AQGGYLLGDSPSRITVASIIEALDGAYRI-EREEVSESENPRIALTIQNLIIDKINDRLD 119
Query: 120 DVLTQYSIECL 130
+VL ++ L
Sbjct: 120 EVLENTTLADL 130
>gi|226324094|ref|ZP_03799612.1| hypothetical protein COPCOM_01872 [Coprococcus comes ATCC 27758]
gi|225207643|gb|EEG89997.1| hypothetical protein COPCOM_01872 [Coprococcus comes ATCC 27758]
Length = 135
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 1/133 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + Y +RV++ A H D +++IA ISE +L +L+ LVK +++ RG+
Sbjct: 2 ISTKGRYALRVMIDLAQHKDEEYVPLNEIAIRQEISEKYLEIVLKILVKKKLLKGRRGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L R + + TI ++++ E + C C C + +K D
Sbjct: 62 GGYQLTRESSEYTIGEILELAEGNLATVACLVPGAEVCSREEQCITLPLWKKFDGMVHDF 121
Query: 122 LTQYSIECLVRNR 134
+ ++E ++
Sbjct: 122 FYEITLEDVLNGN 134
>gi|330990437|ref|ZP_08314396.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329762474|gb|EGG78959.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 207
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 43/94 (45%), Positives = 58/94 (61%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY +R L+Y +H D I ++AEA ISE L K++ L + G V+T+RGR
Sbjct: 1 MRLTLYTDYALRTLLYLGVHADRRVSIREVAEAYGISENHLVKVIHHLGRGGFVDTLRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS 94
GG+ L RPADQI + DVV+ TEE + C +
Sbjct: 61 GGGLMLARPADQINVGDVVRHTEEDMALVGCMSP 94
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
AT E + +C L +C L VL +AL AF VL ++ L+ +K+
Sbjct: 141 ATSAGSAAGEGRSGSAGECLLANACHLRGVLGEALGAFMTVLDARTLADLLTPYE--RKV 198
Query: 141 F 141
Sbjct: 199 L 199
>gi|146295458|ref|YP_001179229.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409034|gb|ABP66038.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 137
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +DY +R++++ + I+E I + FL KI + L+KAGI+E+ RG+
Sbjct: 1 MRLTQASDYALRIVLHLSKKKGVVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119
GG L + + IT+ DV+ A E + + C G C + +
Sbjct: 61 NGGYVLAKNPEDITMKDVILAVEGTLALNRCQIDPSACSKRATGYCAVHKAFSSVMEIVA 120
Query: 120 DVLTQYSIECLVR 132
+Y+ L +
Sbjct: 121 KEFEKYNFAELAK 133
>gi|86138298|ref|ZP_01056872.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseobacter sp. MED193]
gi|85824823|gb|EAQ45024.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseobacter sp. MED193]
Length = 153
Score = 96.1 bits (238), Expect = 1e-18, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + + I++ IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPEGALVVLGDISKRQNISLPYLEQLFVKLRRAELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL R +I ++D++ A +E+ + +
Sbjct: 61 PGGGYRLARRPSEIRVVDILSAVDETVDAMHKGAGASGATSGSRAQSLTNRLWESLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +++N
Sbjct: 121 YVFLHQTRLSDVIQN 135
>gi|300934634|ref|ZP_07149890.1| Rrf2 family transcriptional regulator [Corynebacterium resistens
DSM 45100]
Length = 162
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT D G+R +M + I+ +A+A S+ L +++ LV+ +V +VRG
Sbjct: 1 MRLTTFADLGLRSMMILGDLPEGERLTIADLAKATNASDNHLARVIAKLVEMKLVVSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAF 118
R GG L A ++ +++ E S V +C CPL C L L A AF
Sbjct: 61 RNGGAYLSDTARGASVGKILRQIEGSSEVVDCAG--TRPCPLAARDCALRHRLADAQEAF 118
Query: 119 FDVLTQYSIECLVR 132
F L +I L+
Sbjct: 119 FATLDDDTIGDLIA 132
>gi|15608427|ref|NP_215803.1| hypothetical protein Rv1287 [Mycobacterium tuberculosis H37Rv]
gi|15840735|ref|NP_335772.1| hypothetical protein MT1325 [Mycobacterium tuberculosis CDC1551]
gi|31792479|ref|NP_854972.1| hypothetical protein Mb1318 [Mycobacterium bovis AF2122/97]
gi|121637215|ref|YP_977438.1| hypothetical protein BCG_1346 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|148661074|ref|YP_001282597.1| hypothetical protein MRA_1295 [Mycobacterium tuberculosis H37Ra]
gi|148822504|ref|YP_001287258.1| hypothetical protein TBFG_11313 [Mycobacterium tuberculosis F11]
gi|167969611|ref|ZP_02551888.1| hypothetical protein MtubH3_16956 [Mycobacterium tuberculosis
H37Ra]
gi|215403126|ref|ZP_03415307.1| hypothetical protein Mtub0_05401 [Mycobacterium tuberculosis
02_1987]
gi|215410923|ref|ZP_03419731.1| hypothetical protein Mtub9_06240 [Mycobacterium tuberculosis
94_M4241A]
gi|215426606|ref|ZP_03424525.1| hypothetical protein MtubT9_09527 [Mycobacterium tuberculosis T92]
gi|215430171|ref|ZP_03428090.1| hypothetical protein MtubE_05718 [Mycobacterium tuberculosis
EAS054]
gi|215445463|ref|ZP_03432215.1| hypothetical protein MtubT_05813 [Mycobacterium tuberculosis T85]
gi|218752991|ref|ZP_03531787.1| hypothetical protein MtubG1_05905 [Mycobacterium tuberculosis GM
1503]
gi|219557185|ref|ZP_03536261.1| hypothetical protein MtubT1_07730 [Mycobacterium tuberculosis T17]
gi|224989690|ref|YP_002644377.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253799668|ref|YP_003032669.1| hypothetical protein TBMG_02694 [Mycobacterium tuberculosis KZN
1435]
gi|254231544|ref|ZP_04924871.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|254364183|ref|ZP_04980229.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|254550293|ref|ZP_05140740.1| hypothetical protein Mtube_07514 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|260186223|ref|ZP_05763697.1| hypothetical protein MtubCP_09373 [Mycobacterium tuberculosis
CPHL_A]
gi|260200337|ref|ZP_05767828.1| hypothetical protein MtubT4_09463 [Mycobacterium tuberculosis T46]
gi|260204542|ref|ZP_05772033.1| hypothetical protein MtubK8_09578 [Mycobacterium tuberculosis K85]
gi|289442725|ref|ZP_06432469.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289446881|ref|ZP_06436625.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A]
gi|289554924|ref|ZP_06444134.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289569296|ref|ZP_06449523.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289573949|ref|ZP_06454176.1| Rrf2 family protein [Mycobacterium tuberculosis K85]
gi|289745032|ref|ZP_06504410.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289749839|ref|ZP_06509217.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289753363|ref|ZP_06512741.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289757386|ref|ZP_06516764.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289761441|ref|ZP_06520819.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|294994844|ref|ZP_06800535.1| hypothetical protein Mtub2_10117 [Mycobacterium tuberculosis 210]
gi|297633836|ref|ZP_06951616.1| hypothetical protein MtubK4_06924 [Mycobacterium tuberculosis KZN
4207]
gi|297730823|ref|ZP_06959941.1| hypothetical protein MtubKR_07014 [Mycobacterium tuberculosis KZN
R506]
gi|298524790|ref|ZP_07012199.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306775455|ref|ZP_07413792.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis
SUMu001]
gi|306781632|ref|ZP_07419969.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis
SUMu002]
gi|306784008|ref|ZP_07422330.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis
SUMu003]
gi|306807174|ref|ZP_07443842.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis
SUMu007]
gi|306967373|ref|ZP_07480034.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis
SUMu009]
gi|307079278|ref|ZP_07488448.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis
SUMu011]
gi|307083848|ref|ZP_07492961.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis
SUMu012]
gi|313658155|ref|ZP_07815035.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium
tuberculosis KZN V2475]
gi|54040094|sp|P67160|Y1318_MYCBO RecName: Full=Putative HTH-type transcriptional regulator Mb1318
gi|54042641|sp|P67159|Y1287_MYCTU RecName: Full=Putative HTH-type transcriptional regulator
Rv1287/MT1325
gi|1322411|emb|CAA97753.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|13880926|gb|AAK45586.1| Rrf2 family protein [Mycobacterium tuberculosis CDC1551]
gi|31618068|emb|CAD94179.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
gi|121492862|emb|CAL71333.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|124600603|gb|EAY59613.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|134149697|gb|EBA41742.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
gi|148505226|gb|ABQ73035.1| conserved hypothetical protein [Mycobacterium tuberculosis H37Ra]
gi|148721031|gb|ABR05656.1| conserved hypothetical protein [Mycobacterium tuberculosis F11]
gi|224772803|dbj|BAH25609.1| hypothetical protein JTY_1321 [Mycobacterium bovis BCG str. Tokyo
172]
gi|253321171|gb|ACT25774.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
1435]
gi|289415644|gb|EFD12884.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289419839|gb|EFD17040.1| Rrf2 family protein [Mycobacterium tuberculosis CPHL_A]
gi|289439556|gb|EFD22049.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605]
gi|289538380|gb|EFD42958.1| Rrf2 family protein [Mycobacterium tuberculosis K85]
gi|289543050|gb|EFD46698.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289685560|gb|EFD53048.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987]
gi|289690426|gb|EFD57855.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289693950|gb|EFD61379.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289708947|gb|EFD72963.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503]
gi|289712950|gb|EFD76962.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|298494584|gb|EFI29878.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216075|gb|EFO75474.1| hypothetical protein TMAG_01919 [Mycobacterium tuberculosis
SUMu001]
gi|308325593|gb|EFP14444.1| hypothetical protein TMBG_01320 [Mycobacterium tuberculosis
SUMu002]
gi|308331243|gb|EFP20094.1| hypothetical protein TMCG_00917 [Mycobacterium tuberculosis
SUMu003]
gi|308346415|gb|EFP35266.1| hypothetical protein TMGG_01849 [Mycobacterium tuberculosis
SUMu007]
gi|308354987|gb|EFP43838.1| hypothetical protein TMIG_02961 [Mycobacterium tuberculosis
SUMu009]
gi|308362898|gb|EFP51749.1| hypothetical protein TMKG_01784 [Mycobacterium tuberculosis
SUMu011]
gi|308366483|gb|EFP55334.1| hypothetical protein TMLG_02624 [Mycobacterium tuberculosis
SUMu012]
gi|323720243|gb|EGB29342.1| hypothetical protein TMMG_01982 [Mycobacterium tuberculosis
CDC1551A]
gi|326902908|gb|EGE49841.1| hypothetical protein TBPG_00763 [Mycobacterium tuberculosis W-148]
gi|328459414|gb|AEB04837.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
4207]
Length = 161
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A + + +A A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RP +I+I DV++ + + + LT V R +
Sbjct: 61 REGGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL + ++ +
Sbjct: 120 SVLEETTLADVA 131
>gi|182678359|ref|YP_001832505.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182634242|gb|ACB95016.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 149
Score = 96.1 bits (238), Expect = 2e-18, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A ++ IA A I + FL IL L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGRPLGEATLVTDIAVANEIPKKFLDTILGELRNAGFVNSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L RPA +I + +V+ + +C + DC C + ++ +A NA
Sbjct: 62 GGYTLARPAHEIMVGHIVRVLDGPLAPIQCASKTSYRRCDDCADEKKCTVRLLMLEARNA 121
Query: 118 FFDVLTQYSIECL 130
VL S+ +
Sbjct: 122 IAMVLDNRSLAEM 134
>gi|296282946|ref|ZP_06860944.1| transcriptional regulator [Citromicrobium bathyomarinum JL354]
Length = 140
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY I ++ A + +A+ I KI+ L AG++ + RG
Sbjct: 1 MRLSNLADYAIVIMAATARKCGGGRVSSADLAQETGIPVPTAQKIVSKLSAAGLLRSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG++L RPA I++ D+V+A E + C + DC + C + A
Sbjct: 61 AGGGLQLGRPAAAISMADIVEAIEGPIALVSCIDTG--DCAVEHECSVKPHWPVVNAAVR 118
Query: 120 DVLTQYSIECLV 131
L + S+ +
Sbjct: 119 GALAEVSLAKIA 130
>gi|218514457|ref|ZP_03511297.1| iron-responsive transcriptional regulator [Rhizobium etli 8C-3]
Length = 146
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/118 (56%), Positives = 84/118 (71%), Gaps = 3/118 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA + +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANEGQLSRIPEIAKAYGVSELFLFKILQPLNKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNA 117
GGVRL +PA IT+ DVV+ TE+SF +AECF + +CPLV S L A A
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMAECFEDDGMVECPLVDS--LRPEFGAAQGA 116
>gi|312138539|ref|YP_004005875.1| transcriptional regulator [Rhodococcus equi 103S]
gi|311887878|emb|CBH47190.1| putative transcriptional regulator [Rhodococcus equi 103S]
Length = 148
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LT+ TD G+R++M A P +AE +S K++ L + G+V T
Sbjct: 1 MQLTQFTDLGLRIVMRLATDPAGSGGP-STRAVAEQLAVSYTHATKVVARLSELGVVTTR 59
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RGR GG+ + ++ + + E V C CPL C L S LR A +A
Sbjct: 60 RGRGGGLAITDLGRTASVGWLTRQLEGDGEVVTC--EGDKPCPLRRGCRLRSSLRVAQDA 117
Query: 118 FFDVLTQYSIECLVR 132
F+ L ++ +
Sbjct: 118 FYTALDAMTVRDIAA 132
>gi|257056284|ref|YP_003134116.1| rrf2 family protein, putative transcriptional regulator
[Saccharomonospora viridis DSM 43017]
gi|256586156|gb|ACU97289.1| rrf2 family protein, putative transcriptional regulator
[Saccharomonospora viridis DSM 43017]
Length = 149
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN--RISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L K TD +R++M A+ + + ++A+A + K++ L + G+VE R
Sbjct: 1 MRLMKGTDLALRIVMRLAVVGERESAPTTREVADAVSVPYSHAAKVVTRLQRLGVVEARR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG+ L ++ +V+ E V C CPL +C L + LR A +AF
Sbjct: 61 GRSGGLALTAAGRAASLGRLVRELEGVGDVVGC--EDDPPCPLRTACRLRAALRSAQDAF 118
Query: 119 FDVLTQYSIECLVRNR 134
+ L +IE LV
Sbjct: 119 YAALDPLTIEDLVAEP 134
>gi|149908898|ref|ZP_01897558.1| Rrf2 family protein [Moritella sp. PE36]
gi|149808172|gb|EDM68113.1| Rrf2 family protein [Moritella sp. PE36]
Length = 148
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/140 (27%), Positives = 71/140 (50%), Gaps = 4/140 (2%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+T TD+GIR LMY + + + +++AE S + K++ L +E+ RG+
Sbjct: 6 KITTYTDFGIRTLMYLSTLPKGQRSSSAEVAEVYQASRNHIAKVIAHLSSLNYIESSRGK 65
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ L + A +I I +V+A E + F ++ D LV + L ++L+ + AF
Sbjct: 66 NGGIWLAKSASEINIGQLVRALENNLK---GFDNNTQDSELVPTYQLKNLLQTGIEAFLK 122
Query: 121 VLTQYSIECLVRNRSSIKKI 140
L QYS+ L+ + + +
Sbjct: 123 TLDQYSLADLLDEQREFESL 142
>gi|237728822|ref|ZP_04559303.1| transcriptional regulator [Citrobacter sp. 30_2]
gi|226909444|gb|EEH95362.1| transcriptional regulator [Citrobacter sp. 30_2]
Length = 167
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI LM + +IAE + +L KI L KAG+V ++ G+
Sbjct: 5 SSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L +PA+ IT+LDVV A + + EC F H + G CG+ SV+
Sbjct: 65 GGFQLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFEEHPPEWACEGICGVRSVMD 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L Q++I L R
Sbjct: 125 MAQQRMEEALGQHTILDLARK 145
>gi|170721542|ref|YP_001749230.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
W619]
gi|169759545|gb|ACA72861.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
W619]
Length = 179
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 12/145 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L+Y + + +A+ + + +L K+ L +A +V
Sbjct: 1 MSLYSAGVEYGIHCLLYLVDERGDTRESSVRDLAQLQGVPQEYLAKVFTKLARAKLVAAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RP+D+IT+LD+V A + + +C F G+C +
Sbjct: 61 EGVRGGFRLARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFEGSPPGWATEGTCAIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+V+ A + L Q +I L R
Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145
>gi|222111232|ref|YP_002553496.1| BadM/Rrf2 family transcriptional regulator [Acidovorax ebreus TPSY]
gi|221730676|gb|ACM33496.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax ebreus
TPSY]
Length = 187
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R + + A+ + P + I+ IS +L I L +AG+V ++RG
Sbjct: 1 MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP ++++ D+V A+E+ A+ + +
Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEKYMGGAD-DKGTDTGIASAPGEMTAELWANFHSRVM 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L ++ L+ R +
Sbjct: 120 EYLQSITVADLLTQREA 136
>gi|323702206|ref|ZP_08113873.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
nigrificans DSM 574]
gi|323532893|gb|EGB22765.1| transcriptional regulator, BadM/Rrf2 family [Desulfotomaculum
nigrificans DSM 574]
Length = 135
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R ++Y + + IAE I FL KIL+ L ++GIVE++RG
Sbjct: 1 MRLNQATDYAFRAVLYLSRLPAGEVVEAKTIAEDEQIPIRFLLKILRLLSQSGIVESLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG +L + +ITI DVV+A E V C + + G C L L
Sbjct: 61 VSGGYKLAKKPKEITIKDVVEAVEGPIEVNRCLIHPAECNKNGTGFCPLHKALFSIRQVL 120
Query: 119 FDVLTQYSIECLVR 132
L Y E L +
Sbjct: 121 NRELASYDFETLSK 134
>gi|149914909|ref|ZP_01903438.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseobacter sp. AzwK-3b]
gi|149811097|gb|EDM70934.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseobacter sp. AzwK-3b]
Length = 153
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ A+ + +S+I+ +S +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALVDIALQDGESLVTLSEISRRQDVSLPYLEQLFVKLRRANLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL R A +I ++DV+ A +E+ + + + +
Sbjct: 61 PGGGYRLARSASEIRVVDVLAAVDETVNALQKGAGASGAASGSKAQSMTNRLWESLSAQV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVSN 135
>gi|319782762|ref|YP_004142238.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168650|gb|ADV12188.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 149
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L++ + + ++ IA A I + FL IL L AG V++ +G+
Sbjct: 2 LTKKGKYGLKALVHLSGLPAGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPA +I I VV+ + C + DC +C + ++ + A
Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120
Query: 118 FFDVLTQYSIECL 130
+VL S+ +
Sbjct: 121 IAEVLDNRSLAAM 133
>gi|225572497|ref|ZP_03781361.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM
10507]
gi|225040037|gb|EEG50283.1| hypothetical protein RUMHYD_00794 [Blautia hydrogenotrophica DSM
10507]
Length = 144
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 5/145 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY +RV+ A+ + ++ I E I+ F +KIL+ L KA IV RG
Sbjct: 1 MLITRECDYAVRVIR--ALSGEERLSVNDICEREEITAPFAYKILKKLQKAKIVRGYRGV 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117
GG L + +IT+LDV A + ++ EC K C G C + L +
Sbjct: 59 HGGYSLKKSVSEITLLDVYLAIDPGMYIIECMNPKKKCCRDEKLDGGCEVHQELLRIQER 118
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
D+L++ S++ ++ +K+
Sbjct: 119 LQDMLSERSLQEILGESEKKEKVVG 143
>gi|108800879|ref|YP_641076.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870019|ref|YP_939971.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. KMS]
gi|126436505|ref|YP_001072196.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium sp. JLS]
gi|108771298|gb|ABG10020.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. MCS]
gi|119696108|gb|ABL93181.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. KMS]
gi|126236305|gb|ABN99705.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp. JLS]
Length = 162
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A +D + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATADDGVLVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RPA I+I DV++ + + + LT V R +
Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL Q S+ +
Sbjct: 120 SVLEQTSLADVA 131
>gi|146299648|ref|YP_001194239.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
johnsoniae UW101]
gi|146154066|gb|ABQ04920.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
johnsoniae UW101]
Length = 137
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + Y ++ L+Y A ++ +IA+ I + FL +IL L + V + +G+
Sbjct: 2 LSHKAKYALKALLYLAEQDENHISRTVEIADGANIPKKFLEQILLDLKRGRFVSSKQGKF 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + IT+ ++ + + + + C + DC C L L +
Sbjct: 62 GGYYLIKSKNDITLAEIHRLFDGAIALLPCASLNFYEPCSDCKTESECSLRHGLMLIRDK 121
Query: 118 FFDVLTQYSIECLVRN 133
+ +I LV+
Sbjct: 122 TLKAMEGITIASLVKK 137
>gi|117926820|ref|YP_867437.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
gi|117610576|gb|ABK46031.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
MC-1]
Length = 141
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 69/138 (50%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L++ TDYG V+M+ A + + S+IA+ + E + K+L+ +V+A ++ +VRG
Sbjct: 2 LRLSRMTDYGTLVMMHMAKAPERVHSASEIAQHTKLPEPSVRKVLKIMVRAELLCSVRGL 61
Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKID-CPLVGSCGLTSVLRKALNAF 118
+GG RL + +I++ ++ A E + + +C + D C +C + A
Sbjct: 62 KGGYRLAKLPLEISLEALITALEGTAVAITDCCDDEQTDHCEQFDACHMRPHWVVINEAI 121
Query: 119 FDVLTQYSIECLVRNRSS 136
L +++ L+ +
Sbjct: 122 RHALQGVTVQDLLSSADP 139
>gi|194016021|ref|ZP_03054636.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
gi|194012376|gb|EDW21943.1| transcriptional regulator [Bacillus pumilus ATCC 7061]
Length = 145
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G
Sbjct: 1 MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSSTYLSKILTKLVKAGLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + + + I+ LDV++A E + C H P G C + V++
Sbjct: 61 AKGGYAIMKQKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHDG-CLIEQVMQDVETKMQ 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L+Q + + +K
Sbjct: 120 ETLSQKRLVDIASQIEQTEK 139
>gi|49081590|gb|AAT50195.1| PA2692 [synthetic construct]
Length = 175
Score = 95.8 bits (237), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ A + + +AE + L K+ L KAG+V
Sbjct: 1 MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RPA++I++LDVV+A + + EC F + +C +
Sbjct: 61 EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+V+ A + L Q +I LVR
Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145
>gi|312126489|ref|YP_003991363.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
hydrothermalis 108]
gi|311776508|gb|ADQ05994.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
hydrothermalis 108]
Length = 137
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ +DY +R++++ + I+E I + FL KI + L+KAGI+E+ RG+
Sbjct: 1 MRLTQASDYALRIVLHLSKKKGMVVEADTISEEEKIPKRFLLKICRDLIKAGIIESARGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRKALNAFF 119
GG L + + IT+ DV+ A E + + C G C + +
Sbjct: 61 NGGYILAKNPEDITMKDVILAVEGTLALNRCQIDPSACSKRATGYCAVHKAFSSVMKTVA 120
Query: 120 DVLTQYSIECLVR 132
+Y+ L +
Sbjct: 121 KEFEKYNFAELAK 133
>gi|146279770|ref|YP_001169928.1| hypothetical protein Rsph17025_3759 [Rhodobacter sphaeroides ATCC
17025]
gi|145558011|gb|ABP72623.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17025]
Length = 158
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 64/148 (43%), Gaps = 7/148 (4%)
Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+T++ Y ++ LM A RI IA + FL IL + AG + ++RG
Sbjct: 2 ITQKMKYALKALMVLAEERAGERRALRIEDIAARSGTPKRFLEHILLDIRNAGFIASLRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKAL 115
R GG L + QI + D+++ + C + DC +C + V +
Sbjct: 62 RSGGYLLIKEPSQIPLSDLLRMIDGPIAPLPCLSRRSYQRCEDCTDEAACRIRKVFAEIF 121
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
++ ++ ++ LVR ++ ++I A
Sbjct: 122 WSYLLLIESLTLADLVRTPAAAEQIMAA 149
>gi|88813311|ref|ZP_01128550.1| Rrf2 family protein [Nitrococcus mobilis Nb-231]
gi|88789483|gb|EAR20611.1| Rrf2 family protein [Nitrococcus mobilis Nb-231]
Length = 163
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 12/135 (8%)
Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ ++ Y + LM+ AIHN P +++I+ IS ++ +I+ L +AG+V+ G
Sbjct: 3 RLSTKSRYAVSALMHLAIHNQAGPVPLAEISVCQGISMSYVEQIVGRLRRAGLVQGTPGP 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL R + I++ +V+ S V +
Sbjct: 63 GGGYRLGRSPEHISVGEVIALM-----------EDGRGGRQYTSTLDRIVWSRLTQRIDA 111
Query: 121 VLTQYSIECLVRNRS 135
L ++ V+
Sbjct: 112 FLRGVTLADFVQRPQ 126
>gi|229110219|ref|ZP_04239793.1| Transcriptional regulator [Bacillus cereus Rock1-15]
gi|228673205|gb|EEL28475.1| Transcriptional regulator [Bacillus cereus Rock1-15]
Length = 133
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ A + + Q+AE +S +L KIL L K G++ + G
Sbjct: 1 MKYSKATNYALHTILFLAKATPNKLVSVHQLAEMQNVSPTYLSKILTKLTKEGMIHSSSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + I+ LD++ A E + EC K C + V+ A
Sbjct: 61 PKGGYSLSKNWEDISFLDIIHAIEGKTSLFECCLHDKPGC------LINEVMLAAEEKME 114
Query: 120 DVLTQYSIECLVRN 133
+ L I L +
Sbjct: 115 EELRNQKIVALAKK 128
>gi|158335568|ref|YP_001516740.1| BadM/Rrf2 family transcriptional regulator [Acaryochloris marina
MBIC11017]
gi|158305809|gb|ABW27426.1| transcriptional Regulator, BadM/Rrf2 family [Acaryochloris marina
MBIC11017]
Length = 145
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 65/142 (45%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + +Y + L+ H P RI QIA I + +L ++L L ++G+V + R
Sbjct: 1 MELSCKCEYAVLALLSLVDHYPQGEPLRIRQIAAQQHIPDRYLEQLLAILRRSGLVCSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG L R +IT+L+++ E + + + + ++A A
Sbjct: 61 GARGGYLLAREPWKITLLEIINCIEGRDPQSNALPQTGLT---TEKAVVQELWQEADQAA 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+L +++ L R + K+I
Sbjct: 118 SKILKNCTLQDLCDRRDAKKQI 139
>gi|297162887|gb|ADI12599.1| transcriptional regulator [Streptomyces bingchenggensis BCW-1]
Length = 161
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R + A D + IA A I FL IL L + G+V + RG
Sbjct: 1 MQISARADYAVRAALELAAAGPDTSLKAEAIAAAQGIPHKFLEGILGDLRRGGLVTSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPAD+I I DV++ + ++ + L +
Sbjct: 61 GNGGYRLARPADEIAIADVIRVADGPLVSVRGVRPPQLSYT-GPAESLLPLWVAVRANVR 119
Query: 120 DVLTQYSIECLV 131
+L + ++ +
Sbjct: 120 KILGEVTLADVA 131
>gi|145222864|ref|YP_001133542.1| BadM/Rrf2 family transcriptional regulator [Mycobacterium gilvum
PYR-GCK]
gi|315443329|ref|YP_004076208.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Mycobacterium sp. Spyr1]
gi|145215350|gb|ABP44754.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium gilvum
PYR-GCK]
gi|315261632|gb|ADT98373.1| transcriptional regulator, BadM/Rrf2 family [Mycobacterium sp.
Spyr1]
Length = 158
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A D + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATVGDGALVKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RPA I+I DV++ + + + LT V R +
Sbjct: 61 RDGGYELARPAADISIADVLRCIDGPLASVRDIGLGDLPYS-GPTASLTDVWRALRASMR 119
Query: 120 DVLTQYSIECLV 131
VL Q S+ +
Sbjct: 120 SVLEQTSLADVA 131
>gi|319652366|ref|ZP_08006482.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp.
2_A_57_CT2]
gi|317395828|gb|EFV76550.1| BadM/Rrf2 family Transcriptional regulator [Bacillus sp.
2_A_57_CT2]
Length = 164
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 9/137 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y H D I +++ +SE +L KI L K GIV +V G
Sbjct: 1 MQYSIGVEYALHCLVYLIDHTEDSSIGIKELSTFQGVSETYLSKIFSKLSKNGIVSSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
+GG +L + ++I+ DV++A E + +C SC + V+
Sbjct: 61 VKGGYKLAKSPEEISFWDVIEAVEGPKPIFQCKNIKDNGYLYRDNTCSSAPSSCTINLVM 120
Query: 112 RKALNAFFDVLTQYSIE 128
A D L ++
Sbjct: 121 LSAEEKMRDFLRSKTLS 137
>gi|121594035|ref|YP_985931.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
gi|120606115|gb|ABM41855.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
Length = 187
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 58/137 (42%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R + + A+ + P + I+ IS +L I L +AG+V ++RG
Sbjct: 1 MRLTTRGKLAVTAVTDLALRSHGRPIALPSISARQGISLSYLEDIFSALRRAGLVHSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RP ++++ D+V A+E+ A+ + G + +
Sbjct: 61 PGGGYTLTRPPQELSVADIVIASEKYMGGADDKGTDTGTASAPGE-MTAELWASFHSRVM 119
Query: 120 DVLTQYSIECLVRNRSS 136
+ L ++ L+ R +
Sbjct: 120 EYLQSITVADLLTQREA 136
>gi|15597888|ref|NP_251382.1| transcriptional regulator [Pseudomonas aeruginosa PAO1]
gi|107102215|ref|ZP_01366133.1| hypothetical protein PaerPA_01003266 [Pseudomonas aeruginosa PACS2]
gi|116050677|ref|YP_790503.1| putative transcriptional regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|218891147|ref|YP_002440013.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
gi|254235672|ref|ZP_04928995.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719]
gi|254241118|ref|ZP_04934440.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192]
gi|296388842|ref|ZP_06878317.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1]
gi|313107747|ref|ZP_07793927.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
gi|9948765|gb|AAG06080.1|AE004697_5 probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
gi|115585898|gb|ABJ11913.1| putative transcriptional regulator [Pseudomonas aeruginosa
UCBPP-PA14]
gi|126167603|gb|EAZ53114.1| hypothetical protein PACG_01607 [Pseudomonas aeruginosa C3719]
gi|126194496|gb|EAZ58559.1| hypothetical protein PA2G_01806 [Pseudomonas aeruginosa 2192]
gi|218771372|emb|CAW27139.1| probable transcriptional regulator [Pseudomonas aeruginosa LESB58]
gi|310880429|gb|EFQ39023.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
Length = 174
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ A + + +AE + L K+ L KAG+V
Sbjct: 1 MALYSAGVEYGIHCLLFLADEKGDSRESSVRTLAELQGVPPELLAKVFTRLAKAGLVAAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RPA++I++LDVV+A + + EC F + +C +
Sbjct: 61 EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREVRERCAIFEGNPPSWATRNTCSIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+V+ A + L Q +I LVR
Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145
>gi|310780203|ref|YP_003968535.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
DSM 2926]
gi|309749526|gb|ADO84187.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
DSM 2926]
Length = 140
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T + YG+ L+Y A + + + ++AE IS+ +L +I L K+GI+ +V+G
Sbjct: 1 MIGTNKGHYGLIALIYMAGNIEKKVSVKEVAEKENISKRYLEQIFSALKKSGILISVKGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L R +I + DV++A E+ V +
Sbjct: 61 QGGYLLSRSPKEIKVGDVLRALEDIESAV----PKNYRIEDTSYTIQKEVWDTIEKSINQ 116
Query: 121 VLTQYSIECL 130
++ SIE L
Sbjct: 117 IIDNTSIEDL 126
>gi|172057254|ref|YP_001813714.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171989775|gb|ACB60697.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 130
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY IRVL++ +H +I ++A+ IS+ L KI+ L + G++ + +GR
Sbjct: 1 MKMTRSTDYAIRVLLFTTLHPTRLVQIQEVADYYDISKNHLMKIVHALSRFGLITSYQGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L + +IT+ ++V+ E E F D L + A F +
Sbjct: 61 NGGFKLAKDPSEITLGEIVQ-LFEKVSYLESFPEIHEDENLEN---MKEAFDYAFLQFSE 116
Query: 121 VLTQYSIECLVR 132
L YS++ L+
Sbjct: 117 ALKAYSLQDLIH 128
>gi|283835886|ref|ZP_06355627.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae
ATCC 29220]
gi|291068057|gb|EFE06166.1| transcriptional regulator, BadM/Rrf2 family [Citrobacter youngae
ATCC 29220]
Length = 167
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI LM + +IAE + +L KI L KAG+V ++ G+
Sbjct: 5 SSGVEYGIHSLMCMVDSKGDARDMSVREIAELQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L +PA+ IT+LDVV A + + EC F + G CG+ SV+
Sbjct: 65 GGFQLVKPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPEWACEGICGVRSVMD 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L Q++I L R
Sbjct: 125 MAQQRMEEALGQHTILDLARK 145
>gi|222823943|ref|YP_002575517.1| BadM/Rrf2 family transcriptional regulator [Campylobacter lari
RM2100]
gi|222539165|gb|ACM64266.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter lari
RM2100]
Length = 134
Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L++ A + P + ++ I + FL KILQ L K ++++ +G
Sbjct: 1 MLFTKASEYALLSLIHIA-KSKEPQDVDTMSNVLDIPKSFLAKILQALAKDALLKSYKGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + T+ +++ + E+ S V EC +C + +L K N
Sbjct: 60 KGGFVLIKQPSEYTLKEIINSVEKKSINVFECSNGICPS-QKEDNCKIMPILVKLQNKID 118
Query: 120 DVLTQYSIECLVRNR 134
D L ++E +++N
Sbjct: 119 DFLVSITLEDIIQNN 133
>gi|70726295|ref|YP_253209.1| hypothetical protein SH1294 [Staphylococcus haemolyticus JCSC1435]
gi|68447019|dbj|BAE04603.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 140
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKREGQGCVSLKSIAEENSLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PAD+I D+++ E + E S + + +A
Sbjct: 61 AKGGYQLRVPADEIKAGDIIRLLEGPITIVESIESEPP--------AQKQLWLRMRDAVR 112
Query: 120 DVLTQYSIECLVR 132
+VL +++ L
Sbjct: 113 EVLDNTTLKYLAD 125
>gi|330836543|ref|YP_004411184.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
DSM 17374]
gi|329748446|gb|AEC01802.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
DSM 17374]
Length = 144
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ RT YG+R+L+ A + P ++ A I +L ++ L +G + +V+G
Sbjct: 1 MKISTRTHYGVRLLVDLASQDMADPVPLATTAGRQDIPLRYLEQVADILRWSGFLLSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPA I + DV++A E + + SH+ + + C +V K +A
Sbjct: 61 ASGGYRLARPAQDILLGDVLRALEGDLNIVDPLQSHEAE-NRLQQCLRLTVYNKLEHAIA 119
Query: 120 DVLTQYSIECLV 131
+V+ S+ L+
Sbjct: 120 NVVDTISLASLI 131
>gi|255020290|ref|ZP_05292358.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756]
gi|254970210|gb|EET27704.1| hypothetical protein ACA_2108 [Acidithiobacillus caldus ATCC 51756]
Length = 162
Score = 95.4 bits (236), Expect = 3e-18, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K ++Y ++ L+Y A P I++ + +L KILQ L K G++++ +G
Sbjct: 1 MLLSKTSEYALQALIYLAAQPSGEPVLSRDISDYLRVPAQYLAKILQVLAKRGVLDSYKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L A+Q+ IL+VV+ E + F C K C +C + +
Sbjct: 61 RGGGFVLRPGAEQMNILEVVEMVEGAPFGQGCVLGLKA-CADETACPVHYAWKPLKAQVV 119
Query: 120 DVLTQYSIECLVR 132
++L + +I +
Sbjct: 120 ELLGKQTIGSMAE 132
>gi|326626056|gb|EGE32401.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Dublin str. 3246]
Length = 117
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 4/118 (3%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+ I I DVV+
Sbjct: 1 MTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVREL- 59
Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
E + C + C + +C L L KA+ +F L Y++ LV + K+
Sbjct: 60 EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 114
>gi|152985752|ref|YP_001349321.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
gi|150960910|gb|ABR82935.1| transcriptional regulator [Pseudomonas aeruginosa PA7]
Length = 174
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 12/145 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ A + + +AE + L K+ L KAG+V
Sbjct: 1 MALYSAGVEYGIHCLLFLADEKGDSRESSVRALAELQGVPPELLAKVFTRLAKAGLVAAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RPA++I++LDVV+A + + EC F + +C +
Sbjct: 61 EGVRGGFRLARPANEISVLDVVRAIDGDKSIFECREIRERCALFEGNPPSWATRNTCSIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+V+ A + L Q +I LVR
Sbjct: 121 AVMLTAQKRMEEALAQQTILDLVRR 145
>gi|260433735|ref|ZP_05787706.1| iron-sulfur cluster assembly transcription factor IscR
[Silicibacter lacuscaerulensis ITI-1157]
gi|260417563|gb|EEX10822.1| iron-sulfur cluster assembly transcription factor IscR
[Silicibacter lacuscaerulensis ITI-1157]
Length = 152
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + +I+E IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPADALVTLGEISERQDISLPYLEQLFVKLRRADLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I +++V+ A +E+ A + LT+ +
Sbjct: 61 PGGGYRLARPASEIRVVEVLAAVDETVDAMHKGAGASGASSGSRAQSLTNRLWESLSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVIENE 136
>gi|241767055|ref|ZP_04764836.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
gi|241362402|gb|EER58363.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
Length = 142
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 50/135 (37%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T R + + A + P +S I+ S L ++ L KAG+V++ RG
Sbjct: 1 MRITTRGQLAVSAMTDLAMRQHKGPVALSTISARQGTSLSHLEQLFSALKKAGLVDSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +Q+++ D+V A E P S+
Sbjct: 61 PGGGYALARKPEQVSVADIVVAVENQ----RVAEEAATRGPAQMVSMTGSLWTAFNAQVL 116
Query: 120 DVLTQYSIECLVRNR 134
L ++ LV +
Sbjct: 117 AYLQSVTLRDLVAEQ 131
>gi|311894108|dbj|BAJ26516.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae
KM-6054]
Length = 145
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH++ + DY R L+ A P IA + I FL ++ L +AG+V + RG
Sbjct: 1 MHISAKADYAARALVELACDTGRPLTCEAIASSQEIPFRFLKSVVGDLRRAGLVRSQRGC 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA +IT+LDVV+A + + P + L + R+ +
Sbjct: 61 EGGYWLGRPAAEITLLDVVRAVDGELITLRGEPLTGLAYP-GPADALPGIWREVEERAGE 119
Query: 121 VLTQYSIECLV 131
VL ++ LV
Sbjct: 120 VLAGTTVAALV 130
>gi|116748731|ref|YP_845418.1| BadM/Rrf2 family transcriptional regulator [Syntrophobacter
fumaroxidans MPOB]
gi|116697795|gb|ABK16983.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobacter
fumaroxidans MPOB]
Length = 133
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R++Y + L+Y A H + IA A I FL +IL L A + + +G
Sbjct: 1 MRLTCRSEYALLALVYLARHQGETFIPVPAIAAAQGIPPKFLEQILLSLRLAKYLHSSKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSCGLTSVLRKALNAF 118
+ GG RL +PAD IT+ ++++ + + E + + P+ L ++ ++ +
Sbjct: 61 KNGGFRLAKPADTITLAEIIRLFDGALAPTESASKYFYEPTPIEKEGKLLALFKEVRDYL 120
Query: 119 FDVLTQYSIECLV 131
D + + +I +
Sbjct: 121 SDKMERTTIADVA 133
>gi|320175095|gb|EFW50208.1| Iron-sulfur cluster regulator IscR [Shigella dysenteriae CDC
74-1112]
Length = 152
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 13 VLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
++ A++++ P ++ I+E IS +L ++ L K G+V +VRG GG L + A
Sbjct: 3 AMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDAS 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
I + +V+ A +ES C C ++ R + L ++ LV
Sbjct: 63 SIAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLTGFLNNITLGELV 120
Query: 132 RNRSSI 137
N+ +
Sbjct: 121 NNQEVL 126
>gi|169829936|ref|YP_001700094.1| putative HTH-type transcriptional regulator [Lysinibacillus
sphaericus C3-41]
gi|168994424|gb|ACA41964.1| Putative HTH-type transcriptional regulator [Lysinibacillus
sphaericus C3-41]
Length = 138
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G
Sbjct: 2 MKYSKATNYALHTMVFLTNMPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIESNPG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG R+ + +I+ LDV+ A E + C + H+ G C + V+ A N
Sbjct: 62 VNGGYRISKRPQEISFLDVIYAIEGQTTLFSCSSDHEDSFHNEG-CLIEQVMVDAENNMK 120
Query: 120 DVLTQYSIECLVRN 133
+ L++ I +
Sbjct: 121 EELSKKFIIDIAHE 134
>gi|168699748|ref|ZP_02732025.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata
obscuriglobus UQM 2246]
Length = 169
Score = 95.0 bits (235), Expect = 3e-18, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 58/131 (44%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+++ DY + +L Y + IAE +S F+ IL+ L ++G V + RG +G
Sbjct: 4 LSRKADYALLILSYLYQNKSGG-TARAIAEQFGLSRSFVANILKELCQSGFVASHRGVKG 62
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCGLTSVLRKALNAFF 119
G L R A +++ ++++ E+ F + C A C +C + +
Sbjct: 63 GYALSRDAAGVSLAELLETVEDGFRLTVCNTVHADGAEPCSHSSTCTVKGPMAGVYQRLM 122
Query: 120 DVLTQYSIECL 130
VL ++ L
Sbjct: 123 GVLRDVTLAEL 133
>gi|330994034|ref|ZP_08317964.1| Protein aau3 [Gluconacetobacter sp. SXCC-1]
gi|329758980|gb|EGG75494.1| Protein aau3 [Gluconacetobacter sp. SXCC-1]
Length = 153
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L+K TDY + L+ + ++ + I E + K+L+ L GIV + RG
Sbjct: 2 LKLSKLTDYAVVALVRLG-QKEEVTTSPVLSRSTGIPEPTVAKVLKILATQGIVTSQRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL P ++I+I V++A + + C DC +CGL A +
Sbjct: 61 RGGYRLAHPLEEISIAAVIEAIDGPISLTTCVDGG--DCDARSTCGLGGEWDLVNTAIRN 118
Query: 121 VLTQYSIECL 130
L+ + +
Sbjct: 119 ALSVIMLSDM 128
>gi|330446685|ref|ZP_08310337.1| iscR transcriptional regulator IscR transcriptional dual regulator
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
gi|328490876|dbj|GAA04834.1| iscR transcriptional regulator IscR transcriptional dual regulator
[Photobacterium leiognathi subsp. mandapamensis
svers.1.1.]
Length = 145
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
+ I+E IS +L ++ L KAG+V +VRG GG RL A I + V+ A +ES
Sbjct: 2 ADISERQGISLSYLEQLFSRLRKAGLVTSVRGPGGGYRLGEEASDIAVGMVIAAVDESVD 61
Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
+C DC C ++ + L ++ L+++
Sbjct: 62 ATKCHGKG--DCQGGARCLTHTLWHDLSDRISGFLNNITLGELMKDND 107
>gi|302388919|ref|YP_003824740.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
oceani DSM 16646]
gi|302199547|gb|ADL07117.1| transcriptional regulator, BadM/Rrf2 family [Thermosediminibacter
oceani DSM 16646]
Length = 135
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R +++ + + IAE I F+ KIL+ L +AGIV++ RG
Sbjct: 1 MKLNQATDYAFRAVLHLSKLPPGEVVEARVIAEQEHIPMRFMLKILRLLTQAGIVKSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + IT+ DVV+A E ++ C A + + C + L
Sbjct: 61 VGGGYALAKMPRDITMRDVVEAVEGPVYINRCLIAPEECNKRSTAKCSIHKALFSIQQTI 120
Query: 119 FDVLTQYSIECLVRN 133
D L +Y+ E L +N
Sbjct: 121 NDKLEEYNFEILSKN 135
>gi|152990870|ref|YP_001356592.1| BadM/Rrf2 family transcriptional regulator [Nitratiruptor sp.
SB155-2]
gi|151422731|dbj|BAF70235.1| transcriptional regulator, BadM/Rrf2 family [Nitratiruptor sp.
SB155-2]
Length = 133
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T+ T+Y + L+ A + P ++ IS FL KILQ L K I+++ +G
Sbjct: 1 MLFTRATEYALLALVVIA-KEERPLGTDYLSRRLNISRSFLAKILQALAKQDILKSYKGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
GG +L RPA+Q++I ++ A E + +C + + CP C L L K
Sbjct: 60 SGGFQLARPANQLSIKEISTAAEGKGVNIFDCSSD-QACCPSNKGDFCTLWPFLNKLQTR 118
Query: 118 FFDVLTQYSIECLVR 132
D L + +++ L+
Sbjct: 119 VDDFLEELTLQDLME 133
>gi|269137717|ref|YP_003294417.1| putative transcriptional regulator [Edwardsiella tarda EIB202]
gi|267983377|gb|ACY83206.1| putative transcriptional regulator [Edwardsiella tarda EIB202]
gi|304557773|gb|ADM40437.1| Nitrite-sensitive transcriptional repressor NsrR [Edwardsiella
tarda FL6-60]
Length = 124
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A+ I+Q+ E +S + KI+ L +AG V VRG+ GG+RL RPA +I I D
Sbjct: 3 ALPEGQMTSITQVTEVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L VL +A +AF L Q ++ L+ + +
Sbjct: 63 VVREL-EPLTLVNC---SQAFCHITPACRLKQVLHRATDAFLAELDQCTLADLIEHNPPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|315647231|ref|ZP_07900344.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
gi|315277433|gb|EFU40762.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
Length = 161
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 63/152 (41%), Gaps = 16/152 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K TDY + L++ + + I +++ +SE +L KI+ L + GIV V G
Sbjct: 1 MQFSKSTDYALHALIHLGLSERNNNIGIKELSATLGVSETYLSKIMSKLRQDGIVRAVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------------FASHKIDCPLVGS 104
GG L + +QIT LDV++ E + EC P
Sbjct: 61 VNGGYELAKSPEQITFLDVIQVIEGRQHLFECSNTSSRQHEVLAEVEDDQGDSIRPRKNG 120
Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
C + V+ A L +Y+I+ ++ S
Sbjct: 121 CLVEKVMLGAEQHMHQYLREYTIQYVLDEASK 152
>gi|104781179|ref|YP_607677.1| transcriptional regulator [Pseudomonas entomophila L48]
gi|95110166|emb|CAK14873.1| putative transcriptional regulator [Pseudomonas entomophila L48]
Length = 178
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ + +AE + + +L K+ L +AG+V
Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGDSREASVRDLAELQGVPQEYLAKVFTKLARAGLVVAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RP+D+IT+LD+V A + + + +C F G+C +
Sbjct: 61 EGVRGGFRLARPSDEITVLDIVTAIDGAKKIFDCREIRERCAVFEGSAPGWATEGTCAIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+V+ A + L Q +I L R
Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145
>gi|254439600|ref|ZP_05053094.1| Transcriptional regulator superfamily [Octadecabacter antarcticus
307]
gi|198255046|gb|EDY79360.1| Transcriptional regulator superfamily [Octadecabacter antarcticus
307]
Length = 153
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + L A+ ++P I +A+ IS +L ++ L AG+V +VRG
Sbjct: 1 MKLTTKGRYAMVALTDLALEATEHPVSIRALAKRQDISVTYLEQLFVKLRGAGLVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L RP I I+DV+KA +ES +
Sbjct: 61 PGGGYSLARPPSDIRIVDVLKAVDESVSAMHTGAGVSGGASGSKAQSMTNRLWEGLSANV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 YVFLHQARLSDVVEN 135
>gi|78187526|ref|YP_375569.1| hypothetical protein Plut_1672 [Chlorobium luteolum DSM 273]
gi|78167428|gb|ABB24526.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium luteolum
DSM 273]
Length = 177
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 2/134 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K TDY +R L+ A IA I FL ++LQ L++ +V + G
Sbjct: 21 MKVLNKNTDYAVRALLSLAGSQGVYLSAKTIATEQDIPYQFLRRLLQELIRHRLVVSREG 80
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L R D I + ++++ + V+EC K+ C C L + +
Sbjct: 81 ASGGFKLDRDPDGIALRELIEIFQGPVQVSECLFRKKL-CGNRARCVLRHQILRIEQVVR 139
Query: 120 DVLTQYSIECLVRN 133
+I L+ +
Sbjct: 140 AEFENITIGSLLGD 153
>gi|260463874|ref|ZP_05812071.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
gi|259030471|gb|EEW31750.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
Length = 149
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L++ + + ++ IA A I + FL IL L AG V++ +G+
Sbjct: 2 LTKKGKYGLKALVHLSGLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPA +I I VV+ + C + DC +C + ++ + A
Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120
Query: 118 FFDVLTQYSIECL 130
+VL S+ +
Sbjct: 121 IAEVLDNRSLAAM 133
>gi|300920798|ref|ZP_07137199.1| Rrf2 family protein [Escherichia coli MS 115-1]
gi|300412221|gb|EFJ95531.1| Rrf2 family protein [Escherichia coli MS 115-1]
Length = 125
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ IS++ + +S + KI+ L +AG V VRG+ GG+RL + A I I D
Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKSASAIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L L KA+ +F L Y++ LV +
Sbjct: 63 VVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLMELDNYTLADLVEENQPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|222055613|ref|YP_002537975.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221564902|gb|ACM20874.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 134
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R++Y + L+Y A ++ + IA A I FL +IL L +A + ++RG
Sbjct: 1 MKLTSRSEYALLALIYLARTGSENLVPVQTIATAQGIPPKFLEQILLILKRAKFLRSLRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
+ GG L RPA QI + +V++ + + E + + + P+ L SV + +
Sbjct: 61 QAGGYALARPASQIHLAEVIRLFDGALAPTESVSVYFYESTPIEKEQKLISVFKDIRDYV 120
Query: 119 FDVLTQYSIECLVR 132
L ++ +
Sbjct: 121 AGKLENTTLADVSE 134
>gi|325107421|ref|YP_004268489.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Planctomyces brasiliensis DSM 5305]
gi|324967689|gb|ADY58467.1| transcriptional regulator, BadM/Rrf2 family [Planctomyces
brasiliensis DSM 5305]
Length = 140
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 3/138 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+K +Y +R ++ A D P IA +L +++Q L AG+V++ G G
Sbjct: 2 LSKTAEYALRAVVLLASQPDKPFSADVIAGKTKAPRRYLTRVMQDLAAAGLVQSRPGPGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G + + D ++ILDV+ A + + C K C L + L KA A
Sbjct: 62 GYEMAKGIDAVSILDVINAVDPVERIRSCPLGLK---SHTELCPLHAELDKAYAATEKAF 118
Query: 123 TQYSIECLVRNRSSIKKI 140
+++ L+ + + I +
Sbjct: 119 RNVTLKQLIESANPIVPL 136
>gi|87198220|ref|YP_495477.1| BadM/Rrf2 family transcriptional regulator [Novosphingobium
aromaticivorans DSM 12444]
gi|87133901|gb|ABD24643.1| transcriptional regulator, BadM/Rrf2 family [Novosphingobium
aromaticivorans DSM 12444]
Length = 146
Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + + A H Q+A+ + + K++ L AG++++VRG
Sbjct: 1 MRLSSMADYAVVTMCAAARHCGQQRVSAQQLADETGLPAPTVQKLVSKLSSAGLLKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG++L RPA IT+ D+V+A E +A C + DC L +C + A
Sbjct: 61 ARGGLKLARPAAAITLADIVEAVEGPIALAPCSEHGRHDCTLESACTVRPHWPAVDAALR 120
Query: 120 DVLTQYSIECLVR 132
L + L R
Sbjct: 121 GALAGIPLTQLSR 133
>gi|254877128|ref|ZP_05249838.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254843149|gb|EET21563.1| predicted protein [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 174
Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR
Sbjct: 35 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 94
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F
Sbjct: 95 FGGVSISQATYNINLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 153
Query: 121 VLTQYSIECLVR 132
L+ Y +
Sbjct: 154 RLSDYRFIDICN 165
>gi|13471643|ref|NP_103209.1| hypothetical protein mlr1674 [Mesorhizobium loti MAFF303099]
gi|14022386|dbj|BAB48995.1| mlr1674 [Mesorhizobium loti MAFF303099]
Length = 149
Score = 94.6 bits (234), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L++ + ++ IA A I + FL IL L AG V++ +G+
Sbjct: 2 LTKKGKYGLKALVHLSSLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKE 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG RL RPA +I I VV+ + C + DC +C + ++ + A
Sbjct: 62 GGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDC-DEATCQVRHMMLEVRQA 120
Query: 118 FFDVLTQYSIECL 130
+VL S+ +
Sbjct: 121 IAEVLDNRSLAAM 133
>gi|77464012|ref|YP_353516.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
2.4.1]
gi|126462857|ref|YP_001043971.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17029]
gi|332558886|ref|ZP_08413208.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
WS8N]
gi|77388430|gb|ABA79615.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides 2.4.1]
gi|126104521|gb|ABN77199.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17029]
gi|332276598|gb|EGJ21913.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
WS8N]
Length = 155
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+ + Y + L+ A+ + ++++++ IS +L ++ L +AG+VE V
Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALN 116
RG GG +L RPA+ I + ++++A EE+ + +
Sbjct: 61 RGPGGGYKLARPAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120
Query: 117 AFFDVLTQYSIECLVRNR 134
+ L Q + +++N
Sbjct: 121 HVYVFLHQTRLSDIIKNE 138
>gi|295095801|emb|CBK84891.1| rrf2 family protein (putative transcriptional regulator)
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 169
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI LM A N+ + ++A + +L KI L +AG+V + G+
Sbjct: 5 SSGVEYGIHSLMCMVDAKGNEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVISTEGKG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL RPA+ I++LDV A + + EC F G CG+ SV+
Sbjct: 65 GGFRLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMD 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L +++I L R
Sbjct: 125 SAQQRMEEELGRHTILDLARK 145
>gi|296170194|ref|ZP_06851788.1| Rrf2 family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895146|gb|EFG74863.1| Rrf2 family transcriptional regulator [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 159
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 2/132 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + +Y +R ++ A + + + +A+A I FL IL L +V + RGR
Sbjct: 1 MSAKAEYAVRAMVQLATVPHGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RP D+I+I DV++ + + + LT V R + V
Sbjct: 61 GGYELARPGDEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMRSV 119
Query: 122 LTQYSIECLVRN 133
L + ++ + N
Sbjct: 120 LEETTLADVAAN 131
>gi|284046839|ref|YP_003397179.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Conexibacter woesei DSM 14684]
gi|283951060|gb|ADB53804.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
DSM 14684]
Length = 157
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + +YG+R+++ + P + IA A + +L +++ L KA +V + RG
Sbjct: 1 MIFSSKAEYGVRLMVELGRQGAEQPISLKAIAAAEQLPLAYLEQVVARLKKAELVRSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPL------VGSCGLTSV 110
GG L RPA++IT+ +VV A E + ECF + + C C +
Sbjct: 61 AHGGYWLARPAEEITMDEVVLALEGAIAPMECFVNEHTERVLCSHVDHGDADQHCATKLL 120
Query: 111 LRKALNAFFDVLTQYSIECLVR 132
+ L ++ LV
Sbjct: 121 WMRVQGGVIRSLQTTTLAELVE 142
>gi|261855901|ref|YP_003263184.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Halothiobacillus neapolitanus c2]
gi|261836370|gb|ACX96137.1| transcriptional regulator, BadM/Rrf2 family [Halothiobacillus
neapolitanus c2]
Length = 150
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 60/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT + + + L++ A ++ +++I+ +S +L ++ + +A +V R
Sbjct: 1 MRLTTKCRHAVTALIHLANRSNEQTTVSLAEISTIQGVSISYLEQLFSKMRQADLVIGTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG RL RP +QIT+ + A ++ E CP + +
Sbjct: 61 GPGGGYRLNRPPEQITVAHIADAIDDRCR-EERLEGFNKSCPDKRNFA-QDKWNEFSREL 118
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L ++ V N++ I+
Sbjct: 119 YLFLDTITLSRFVENQTPIQ 138
>gi|157691453|ref|YP_001485915.1| transcriptional regulator [Bacillus pumilus SAFR-032]
gi|157680211|gb|ABV61355.1| transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 145
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 64/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ + + +A+ +S +L KIL LVKAG++E+ G
Sbjct: 1 MKYSKATNYALHTMVFLTLAPKGKAIGVEPLAKMQDLSATYLSKILTKLVKAGLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + + + I+ LDV++A E + C H P G C + ++
Sbjct: 61 AKGGYTILKKKEDISFLDVIQAVEGQTNLFRCSLEHDSFMPHNG-CLIEQAMQDVETKMQ 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L+Q + + +K
Sbjct: 120 ETLSQKRLVDIASQIEQTEK 139
>gi|226195510|ref|ZP_03791098.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei Pakistan 9]
gi|225932470|gb|EEH28469.1| iron-sulfur cluster assembly transcription factor IscR
[Burkholderia pseudomallei Pakistan 9]
Length = 154
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 2/116 (1%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
++ I++ IS +L ++ L + IVE+VRG GG L R A +T+ D++ A +E
Sbjct: 1 MTLAGISQRQRISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAQDVTVADIIIAVDE 60
Query: 85 SFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
+C + G C + + L S++ LV + + +
Sbjct: 61 PLDATQCGGKGACEGSKQPDGHCMTHELWSTLNQKMVEYLDSVSLQDLVDQQRARE 116
>gi|161505868|ref|YP_001572980.1| hypothetical protein SARI_04045 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867215|gb|ABX23838.1| hypothetical protein SARI_04045 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 167
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 42/141 (29%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI LM + +IA+ + +L KI L KAG+V ++ G+
Sbjct: 5 SSGVEYGIHSLMCMVDSKGDAREMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L +PA+ IT+LDVV A + + EC F G CG+ SV+
Sbjct: 65 GGFQLAKPAEHITVLDVVNAIDGDKRIFECREIRQRLTVFDEQPPAWACEGICGVRSVMD 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L Q++I L R
Sbjct: 125 MAQQRMEEALEQHTILDLARK 145
>gi|111017203|ref|YP_700175.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110816733|gb|ABG92017.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length = 153
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ + + + + P +++AE +S+ +L K LQ L +AG+V GR
Sbjct: 1 MKLSGGVEWALHCCVVLS-QAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R + IT+LDVV+A + + C A+ C +CG+ V+
Sbjct: 60 DGGYVLTRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQC--RSACGIAKVMA 117
Query: 113 KALNAFFDVLTQYSIECL 130
A A+ L+ +I L
Sbjct: 118 GAEQAWRASLSSVTIADL 135
>gi|241668595|ref|ZP_04756173.1| putative transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 140
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR
Sbjct: 1 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F
Sbjct: 61 FGGVSISQATYNINLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119
Query: 121 VLTQYSIECLVR 132
L+ Y +
Sbjct: 120 RLSDYRFIDICN 131
>gi|227357123|ref|ZP_03841492.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
gi|227162655|gb|EEI47622.1| transcriptional regulator [Proteus mirabilis ATCC 29906]
Length = 126
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ I+++ + +S + KI+ L G VE +RG+ GG+RL +PA I + +
Sbjct: 3 SLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHMGFVEAIRGKNGGIRLGKPAADIIVGE 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+A E + C A C + +C L VL +A+ F L ++++ LV N S +
Sbjct: 63 VVRAL-EPLSLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|296115761|ref|ZP_06834387.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295977738|gb|EFG84490.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 151
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 47/135 (34%), Positives = 73/135 (54%), Gaps = 4/135 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R L Y +H D I ++A A ISE L K++ L + G ++T+RGR GG+ L R A
Sbjct: 1 MRTLFYVGLHTDRRVSIREVANAYGISENHLVKVIHKLGRGGFIQTMRGRGGGLTLARAA 60
Query: 71 DQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
D+I I DVV+ TEE + C + C L C L +L +A++AF VL ++
Sbjct: 61 DEIRIGDVVRYTEEDMNLVACEPTTVDGRSCVLARHCRLRGLLGQAIDAFMMVLDGATLG 120
Query: 129 CLVRNRS--SIKKIF 141
L+ + +++IF
Sbjct: 121 SLLTDEDCVVLRQIF 135
>gi|146278399|ref|YP_001168558.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
ATCC 17025]
gi|145556640|gb|ABP71253.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides ATCC 17025]
Length = 155
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+ + Y + L+ A+ + ++++++ IS +L ++ L +AG+VE V
Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALN 116
RG GG +L R A +I + ++++A EE+ + +
Sbjct: 61 RGPGGGYKLARDAQEIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120
Query: 117 AFFDVLTQYSIECLVRNR 134
+ L Q + +++N
Sbjct: 121 HVYVFLHQTRLSDIIKNE 138
>gi|315498886|ref|YP_004087690.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
excentricus CB 48]
gi|315416898|gb|ADU13539.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
excentricus CB 48]
Length = 138
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++R Y IR + A + ++AE FL IL L + G + + RGR
Sbjct: 2 LSQRAKYAIRAMQEMARIPQGQTVQAGELAERIKAPLHFLEGILLELRREGFLMSKRGRS 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L RP+D I++ D+++ + + C + DCP C L VL A +A
Sbjct: 62 GGYMLARPSDMISMADLIRLIDGPLALTPCASRTAYARCEDCPTPDDCQLRLVLLAARDA 121
Query: 118 FFDVLTQYSIEC 129
VL ++
Sbjct: 122 MARVLESSTLAE 133
>gi|169630216|ref|YP_001703865.1| hypothetical protein MAB_3134c [Mycobacterium abscessus ATCC 19977]
gi|169242183|emb|CAM63211.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length = 137
Score = 94.2 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ TD G+R++M A+ + +A C+S K++ L + G +E+ RG
Sbjct: 1 MQLTRFTDLGLRIVMRLAVEGPNAQLHTDDLAAQLCVSYTHATKVVARLSEMGAIESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GGVR+ + + + + E S V +C CPL +C L LR A +AFF
Sbjct: 61 RHGGVRITQDGLGRRVGSLARKLERSGEVIDC--EGDPPCPLRRNCRLREALRSAQDAFF 118
Query: 120 DVLTQYSIECLVR 132
L Q+++ + R
Sbjct: 119 THLDQWTVAEIAR 131
>gi|18310768|ref|NP_562702.1| hypothetical protein CPE1786 [Clostridium perfringens str. 13]
gi|18145449|dbj|BAB81492.1| conserved hypothetical protein [Clostridium perfringens str. 13]
Length = 128
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
I I++ ISE +L ++ L KA +++++RG +GG L R + IT+ D+++ E
Sbjct: 1 MSIKSISQRQNISEYYLEQLFSSLRKAKLIKSIRGAQGGYILNRQPEDITVSDIIEVLEG 60
Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
+++C + C V C + +K + +V +++ +V + ++K+
Sbjct: 61 PIEISDCLDG--VTCNNVDCCATRLLWKKIKTSIDEVTNSVTLKDIVEDYKAMKE 113
>gi|169333748|ref|ZP_02860941.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM
17244]
gi|169259597|gb|EDS73563.1| hypothetical protein ANASTE_00132 [Anaerofustis stercorihominis DSM
17244]
Length = 132
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR L+Y A D I A I E +L+K++ + G VE VRG
Sbjct: 1 MQLNITTDYAIRSLIYIA-EKDREVSRRDICSATKIPENYLYKLMAKFRECGYVEAVRGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L I++ D+V E S + C + G+C + + +
Sbjct: 60 DGGYKLIVDPKDISVFDIVTLVEGSININRCALDGRECSKDGHGNCKVHAFYVGLQGSIE 119
Query: 120 DVLTQYSIECLVR 132
+L + +++ L+R
Sbjct: 120 KILRKTTLKSLMR 132
>gi|262197356|ref|YP_003268565.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Haliangium ochraceum DSM 14365]
gi|262080703|gb|ACY16672.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
DSM 14365]
Length = 183
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 42/169 (24%), Positives = 62/169 (36%), Gaps = 32/169 (18%)
Query: 1 MHLTKRTDYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M L+ +T YG+R + A H + IA I +L +I Q L +AG+VE+
Sbjct: 1 MRLSTKTRYGVRAIFDIAYHGQDQPGVAAQAKDIARREDIPLRYLEQIFQDLKRAGLVES 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFF---VAECFASHKIDCPLVGSC-------- 105
RG RGG L R A++IT+ DVV+A + V E A + P
Sbjct: 61 KRGPRGGYSLKRSAEEITLGDVVRALQGPIEEMFVVEDTAQNSSARPRRARQSASAGAAE 120
Query: 106 -----------------GLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
++ R+ SI LV +
Sbjct: 121 GSAPATELGSRAITSRTVTVALWRELATHVSQWFDSVSISDLVLRGEEL 169
>gi|332765883|gb|EGJ96094.1| iscR transcriptional regulator IscR transcriptional dual regulator
[Shigella flexneri 2930-71]
Length = 149
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A++++ P ++ I+E IS +L ++ L K G+V +VRG GG L + A
Sbjct: 1 MLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + +V+ A +ES C C ++ R + L ++ LV
Sbjct: 61 IAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLTGFLNNITLGELVN 118
Query: 133 NRSSI 137
N+ +
Sbjct: 119 NQEVL 123
>gi|56963070|ref|YP_174797.1| transcriptional regulator [Bacillus clausii KSM-K16]
gi|56909309|dbj|BAD63836.1| transcriptional regulator [Bacillus clausii KSM-K16]
Length = 139
Score = 94.2 bits (233), Expect = 6e-18, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + + + ++ + + Q+A+ +S +L KIL LVKAG++E+ G
Sbjct: 1 MKYSKATNYALHTMAFLTLNEKNEAIGVEQLAKMQNLSPTYLSKILTKLVKAGLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL + + + LDV++A E + C H P C + V+ A
Sbjct: 61 VKGGYRLLKRQKETSFLDVIQAIEGQTSLFHCSLDHNEL-PHNHGCLIEQVMMNAEAKMK 119
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L I + R +
Sbjct: 120 ADLDATYIADIARQMKEKRA 139
>gi|312792436|ref|YP_004025359.1| BadM/Rrf2 family transcriptional regulator [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312877006|ref|ZP_07736980.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
lactoaceticus 6A]
gi|311796237|gb|EFR12592.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
lactoaceticus 6A]
gi|312179576|gb|ADQ39746.1| transcriptional regulator, BadM/Rrf2 family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 137
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ DY +R++++ + IA+ I + FL KI + LVKAGI+E+VRG+
Sbjct: 1 MKLTQAADYALRMVLHLSKKRGMVVEADTIAQEEKIPKRFLLKISRDLVKAGIIESVRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
GG L + ++IT+ DV+ A E + + C + C G C + +
Sbjct: 61 NGGYTLAKKPEEITMKDVIIAVEGTLALTRCLYDP-LACNKKATGYCAVHKAFCSVMEKV 119
Query: 119 FDVLTQYSIECLV 131
D L +Y+ + LV
Sbjct: 120 SDELEKYTFDKLV 132
>gi|126728568|ref|ZP_01744383.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Sagittula stellata E-37]
gi|126710498|gb|EBA09549.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Sagittula stellata E-37]
Length = 154
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ ++ D + +++ +S +L ++ L +AG+VE+VRG
Sbjct: 1 MKLSTKGRYAMVALVDISLQGCDDLVTLGDVSKRQDLSLPYLEQLFVKLRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL + I ++D++ A +E+ A + L++ + +
Sbjct: 61 PGGGYRLAKSPSDIRVVDILAAVDETVDAMHKGAGASGGLSGSKAQSLSNMLWQSLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V
Sbjct: 121 YVFLHQTRLSDVVER 135
>gi|99081081|ref|YP_613235.1| BadM/Rrf2 family transcriptional regulator [Ruegeria sp. TM1040]
gi|99037361|gb|ABF63973.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. TM1040]
Length = 152
Score = 93.8 bits (232), Expect = 6e-18, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + ++ I++ IS +L ++ L + G+V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPSEGLVVLADISKRQQISLPYLEQLFVKLRRGGLVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I +++++ A +E+ A + LT+ +
Sbjct: 61 PGGGYRLARPASEIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVIEN 135
>gi|224372917|ref|YP_002607289.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola
AmH]
gi|223589916|gb|ACM93652.1| transcriptional regulator, BadM/Rrf2 family [Nautilia profundicola
AmH]
Length = 138
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK T Y + L+ + D P ++ +AE + + FL K+LQ L + G V++ +G
Sbjct: 1 MLFTKSTAYTLHALVELSKF-DKPVDVTHLAEITELPKPFLAKLLQTLSRKGFVKSFKGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG L + I I+D+ + E+ + +S DC + C + F
Sbjct: 60 HGGFILSKEPKDIKIIDIFRVMEDKNSLVFYCSSDPDDCMRGRANICSIRPFFAFLEEEF 119
Query: 119 FDVLTQYSIECLVRNRS 135
++ Y++E ++R +S
Sbjct: 120 LKIVQNYTLEDVIRMKS 136
>gi|85707148|ref|ZP_01038235.1| rrf2 family protein [Roseovarius sp. 217]
gi|85668307|gb|EAQ23181.1| rrf2 family protein [Roseovarius sp. 217]
Length = 100
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 47/100 (47%), Positives = 63/100 (63%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TKRT+ IR+LM+CA +ND ++IAE C SE L +I+ L + G + T RGR
Sbjct: 1 MRITKRTNIAIRLLMFCASNNDRLVTKAEIAERCNTSESHLAQIINRLSQLGFLYTQRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
GGVRL RP +IT+ DV + E++ VAECFA CP
Sbjct: 61 TGGVRLGRPMTEITVGDVFRQLEQNTPVAECFADVDNTCP 100
>gi|239982229|ref|ZP_04704753.1| putative transcriptional regulator [Streptomyces albus J1074]
gi|291454076|ref|ZP_06593466.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291357025|gb|EFE83927.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 153
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M LT+ TD +RVLM A+ + D ++A + K + L G+VE
Sbjct: 1 MRLTRFTDLALRVLMRLAVEDPKATDDLPTTREVAAGMRVPYTHTAKAVARLQHLGLVEA 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
RGR GG+ L ++ +V+ E + V EC CPL +C L LR+A
Sbjct: 61 RRGRGGGLTLTAAGRSASVGALVRELEGTGDVVEC--EGAEPCPLRSACRLRGALRQAQE 118
Query: 117 AFFDVLTQYSIECLVRNRS 135
AFF L ++ L + +
Sbjct: 119 AFFAALDPLTVGGLAASPT 137
>gi|299822759|ref|ZP_07054645.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
gi|299816288|gb|EFI83526.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
Length = 150
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + ++Y A + + ++AE +S +L K+L LVKAG++E+V G
Sbjct: 8 MKYSKATNYALHTMVYLAHTTLENTLGVKELAERFQVSSTYLSKVLTTLVKAGLIESVSG 67
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L R ++ IT LDVV+A E + + C + C + + +++A
Sbjct: 68 VKGGYKLARSSETITFLDVVQAVEGANPLFVCGMNATPA-HNEKICLIENAMKEAEQKME 126
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L +I + R S+K+
Sbjct: 127 ADLATKTIAGVARQMKSLKE 146
>gi|222100083|ref|YP_002534651.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
DSM 4359]
gi|221572474|gb|ACM23286.1| Transcriptional regulator, BadM/Rrf2 family [Thermotoga neapolitana
DSM 4359]
Length = 143
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K Y +R+LM ++ + P S++AE I+ F K+L L ++G+V +++G+ GG
Sbjct: 10 KHVRYALRLLMRLSLE-NRPMSSSELAEKEHITRSFTLKVLHYLKRSGLVSSIKGKNGGF 68
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
L R AD+I+ LD+++A E+ + +C C C + ++ +
Sbjct: 69 VLARSADEISFLDIIRAFEKDLVIVDCS----NRCENYKHCRAKYFWSWLSDHLKEMFSS 124
Query: 125 YSIECLV 131
+++ +
Sbjct: 125 ITLKDIA 131
>gi|153011488|ref|YP_001372702.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
ATCC 49188]
gi|151563376|gb|ABS16873.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
ATCC 49188]
Length = 143
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNAF 118
GG L RPA +I I ++++A + + C + D C + ++ A
Sbjct: 62 GGFCLARPAHEIAIGNIIRALDGALAPIACASKTDYRPCDDCDEDECEVRHMMLDVREAI 121
Query: 119 FDVLTQYSIEC 129
VL ++
Sbjct: 122 ASVLDHRTLAD 132
>gi|116626733|ref|YP_828889.1| BadM/Rrf2 family transcriptional regulator [Candidatus Solibacter
usitatus Ellin6076]
gi|116229895|gb|ABJ88604.1| transcriptional regulator, BadM/Rrf2 family [Candidatus Solibacter
usitatus Ellin6076]
Length = 158
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 64/142 (45%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ +YG+R L+ + I ++++A +S + K+L+ L K G V+ RG
Sbjct: 1 MKLSANEEYGLRCLVRIGYAGEGGSLTIPEMSQAEGVSPAYAAKVLRVLRKGGFVKAARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESF---FVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+ GG L RPA+ I I DV+ E A C C + S+ R
Sbjct: 61 KDGGYTLARPAEAIVIGDVMDVLGGRIFESSFCESHAGQAAICTRSIDCSVRSLWRAVQV 120
Query: 117 AFFDVLTQYSIECLVRNRSSIK 138
A VL++ ++ L++N +
Sbjct: 121 AVDQVLSKATLRDLLQNEEEMN 142
>gi|226326637|ref|ZP_03802155.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198]
gi|225204858|gb|EEG87212.1| hypothetical protein PROPEN_00487 [Proteus penneri ATCC 35198]
Length = 126
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/124 (29%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ I+++ + +S + KI+ L G VE +RG+ GG+RL +PA I + +
Sbjct: 3 SLPEGKMTSITEVTQVYGVSRNHMVKIINQLSHLGFVEAIRGKNGGIRLGKPATDIIVGE 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+A E + C A C + +C L VL +A+ F L ++++ LV N SS+
Sbjct: 63 VVRAL-EPLSLVNCSAEF---CHITPACRLKLVLNQAIEQFLKELDRHTLAELVENNSSL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|189499741|ref|YP_001959211.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides BS1]
gi|189495182|gb|ACE03730.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides BS1]
Length = 132
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ ++Y A + + ++A S+ FL K LQ L KAGIV +V+G
Sbjct: 2 LQVSRKFEYGLHAVVYLARRESGEVVTVKEMAADIGFSQEFLAKALQQLKKAGIVLSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG RL ++ITI D+ +A E + C + C +V SC S + K
Sbjct: 62 VKGGYRLAGLPEEITISDIARAIEGPPRLMRCSSERGK-CEIVSSCSNRSTMFKLEKNID 120
Query: 120 DVLTQYSIECLV 131
++ + L+
Sbjct: 121 ALMADTKVSALL 132
>gi|194333510|ref|YP_002015370.1| BadM/Rrf2 family transcriptional regulator [Prosthecochloris
aestuarii DSM 271]
gi|194311328|gb|ACF45723.1| transcriptional regulator, BadM/Rrf2 family [Prosthecochloris
aestuarii DSM 271]
Length = 137
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++++ +YG+ ++Y A +D + ++A S+ F+ K LQ L +AG+ +V+G
Sbjct: 2 LKVSRKFEYGLHAIIYLAGKSDDEIVTVKEMAAEIGFSQEFMAKALQKLKRAGLALSVQG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L +PA +IT+ DV +ATE + C + C +V SC +
Sbjct: 62 VKGGYKLGKPAAEITVADVGRATEGEPHLMRCSSEEG-SCEIVRSCPHRGYMFSLEKRIQ 120
Query: 120 DVLTQYSIECLVRNRS 135
++ + ++ L++
Sbjct: 121 GLMAETTVMALLQRHE 136
>gi|291533964|emb|CBL07077.1| rrf2 family protein (putative transcriptional regulator) [Megamonas
hypermegale ART12/1]
Length = 135
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR+++ A + I+ I + ++ KI + LV A ++E G
Sbjct: 1 MQLNITTDYAIRIILALANRDGEVVSSKDISMTMKIPQKYVLKITRSLVAAELIERRSGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
GG L + ++I++L++VK E + +V C C +C + + N
Sbjct: 61 YGGFLLAKKPEEISLLEIVKVMEPTMYVNRCLEEDNY-CSRDAVDNCSIRKIYTNFQNII 119
Query: 119 FDVLTQYSIECLVRNR 134
+ ++ +I+ L+ N+
Sbjct: 120 EEKFSEITIKTLIDNK 135
>gi|328552169|gb|AEB22661.1| transcriptional regulator [Bacillus amyloliquefaciens TA208]
Length = 167
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + + I +AE +SE FL K+ L KAGIV +V G
Sbjct: 1 MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSETFLSKVFGKLSKAGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109
+GG RL + + I+ DV++A E + +C SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLYRDKCNSCESSNSSCTINL 120
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A L ++
Sbjct: 121 VMLEAEEQMRKYLRNKTLA 139
>gi|282855397|ref|ZP_06264720.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
piscolens W5455]
gi|282586777|gb|EFB92022.1| transcriptional regulator, BadM/Rrf2 family [Pyramidobacter
piscolens W5455]
Length = 151
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R YG+R ++ + + P +S +A+A +S+ +L +++ L +AGI+ + R
Sbjct: 1 MKVSTRAHYGLRAVIAISEMARSGLPVSVSDVAKAENLSDTYLEQLVSKLRRAGILRSYR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALN 116
G RGG L R D IT+ +V+KA E EC + C + + +
Sbjct: 61 GARGGYELVRDPDTITVAEVLKAAGEQIIFPECTTPEGCELAHQRGHVCASSHFWQNLNS 120
Query: 117 AFFDVLTQYSIECLVRNRSS 136
+ + ++ L+RN
Sbjct: 121 MVNKIAEETTVGSLIRNYEE 140
>gi|162148975|ref|YP_001603436.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
gi|161787552|emb|CAP57148.1| putative transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
Length = 180
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
T+Y + L++ + + P +A+ I F+ K+L L KAG++E G RGG RL
Sbjct: 8 TEYVLHSLLWLVGNPE-PVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66
Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
RPA+ I++L VV A E + C F G CG+ +V+ +A A
Sbjct: 67 ARPAEDISVLAVVDAVEGRKSLFNCQEIRRRCALFDERPPRWATQGVCGIHAVMLRAEQA 126
Query: 118 FFDVLTQYSIECL---VRNRSSIKKIFNA 143
L + S+ L VR+++ + + +A
Sbjct: 127 MRQELARTSLADLARSVRDKAPLPFLGDA 155
>gi|308172347|ref|YP_003919052.1| transcriptional regulator [Bacillus amyloliquefaciens DSM 7]
gi|307605211|emb|CBI41582.1| putative transcriptional regulator [Bacillus amyloliquefaciens DSM
7]
Length = 167
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y + + I +AE +SE FL K+ L KAGIV +V G
Sbjct: 1 MQYSAGVEYALHCLVYLIDVPSKKSVGIRDLAEFQGLSESFLSKVFGKLSKAGIVNSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109
+GG RL + + I+ DV++A E + +C SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVSNGLLYRDKCNSCESSNSSCTINL 120
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A L ++
Sbjct: 121 VMLEAEEQMRKYLRNKTLA 139
>gi|312973225|ref|ZP_07787397.1| rrf2 family protein [Escherichia coli 1827-70]
gi|310331820|gb|EFP99055.1| rrf2 family protein [Escherichia coli 1827-70]
Length = 149
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A++++ P ++ I+E IS +L ++ L K G+V +VRG GG L + A
Sbjct: 1 MLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I + +V+ A +ES C C ++ R + L ++ LV
Sbjct: 61 IAVGEVISAVDESVDATRCQGKGGC--QGGDKCLTHALWRDLSDRLTGFLNNITLGELVN 118
Query: 133 NRSSI 137
N+ +
Sbjct: 119 NQEVL 123
>gi|251794316|ref|YP_003009047.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247541942|gb|ACS98960.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 166
Score = 93.8 bits (232), Expect = 7e-18, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + +Y + L+Y I N+ I ++A I E +L KI L KAGIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYL-IPNESTIGIKELAFFQGIPETYLSKIFTKLTKAGIVSSVPGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDC-PLVGSCGLTS 109
+GG +L R D I+ DVV+A E + +C DC GSC +
Sbjct: 60 KGGFKLARVPDDISFWDVVEAVEGKKPIFQCQNIKDKGYLYRNRDCSDCAASTGSCSINL 119
Query: 110 VLRKALNAFFDVLTQYSIE 128
V+ +A + L +
Sbjct: 120 VMLEAEETMQNYLRNKKLS 138
>gi|168700728|ref|ZP_02733005.1| hypothetical protein GobsU_14484 [Gemmata obscuriglobus UQM 2246]
Length = 154
Score = 93.8 bits (232), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 2/134 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ +Y +R +++ A +QIAEA + + +L KILQ L K GIV+T RG G
Sbjct: 2 FSRTVEYALRAVVHLAHEAPKARTTAQIAEATQVPKDYLSKILQGLAKKGIVDTQRGVGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
GV L + +TILDVV A E + C + P + C L + A+ +
Sbjct: 62 GVSLTKSPHDLTILDVVNAVEPIERITTCPLNLPNHGPNL--CPLHKRMDAAMALVEEAF 119
Query: 123 TQYSIECLVRNRSS 136
++ ++ + +S
Sbjct: 120 RGSTLAEVLADPTS 133
>gi|84499296|ref|ZP_00997584.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597]
gi|84392440|gb|EAQ04651.1| hypothetical protein OB2597_05195 [Oceanicola batsensis HTCC2597]
Length = 139
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 39/109 (35%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDYG+R LM A + ++IA+ IS L K++Q L + G V T RG
Sbjct: 1 MRLTSFTDYGLRALMRMASVPERAFSTAEIADEFGISRNHLNKVVQRLARHGFVATRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
GG L PA +I + D+V+ E+ + ECF+ C + C L
Sbjct: 61 GGGAILALPASEIGLGDLVRLLEQDQALVECFSPDGACC-VTPVCRLKG 108
>gi|89902226|ref|YP_524697.1| BadM/Rrf2 family transcriptional regulator [Rhodoferax
ferrireducens T118]
gi|89346963|gb|ABD71166.1| transcriptional regulator, BadM/Rrf2 family [Rhodoferax
ferrireducens T118]
Length = 182
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + + ++ A+ P +S IA IS +L ++ L + G+V + RG
Sbjct: 1 MRLSTKGRFAVTAMIDVALREKLGPVPLSDIAVRQQISLSYLEQMFSKLRQHGLVASTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSCGLTSVLRKALNA 117
GG L + AD+IT+ D++ A E+ + K G +
Sbjct: 61 PGGGYALGQQADRITVADIIGAVEDETDRSTKDAVRHAKTAASSAGKDMAQDLWDSLNTK 120
Query: 118 FFDVLTQYSIECLV 131
D + ++ L
Sbjct: 121 MMDYMQSVTLRSLA 134
>gi|218516163|ref|ZP_03513003.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
Length = 123
Score = 93.4 bits (231), Expect = 8e-18, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A D P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTVLADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVASRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIIDGPIAPLPCLSITAYRKCDDCDGEQTCEIRHVFAKVADA 121
Query: 118 FF 119
Sbjct: 122 TR 123
>gi|227818808|ref|YP_002822779.1| transcriptional regulator [Sinorhizobium fredii NGR234]
gi|36959063|gb|AAQ87488.1| RRF2 family protein [Sinorhizobium fredii NGR234]
gi|227337807|gb|ACP22026.1| predicted transcriptional regulator [Sinorhizobium fredii NGR234]
Length = 179
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 2 HLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
H++ +Y + L+Y A P +AE + F+ K+ L K+GIV G
Sbjct: 3 HVSAGVEYALHCLLYLIDAEELGQPASARDLAELQKVPAEFVAKLFTKLQKSGIVVAREG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSV 110
GG L RPA IT LDV++A + + EC F + G C + +V
Sbjct: 63 IGGGFALARPATDITALDVIEAVDGRKALFECKEIRAQCALFGDRTPVWAMDGVCSIHAV 122
Query: 111 LRKALNAFFDVLTQYSIECLVRNRSS 136
+ +A +VL +++ + ++
Sbjct: 123 MIEAEKRTREVLAGHTLASIAGRAAA 148
>gi|310815010|ref|YP_003962974.1| Putative HTH-type transcriptional regulator rrf2-like protein
[Ketogulonicigenium vulgare Y25]
gi|308753745|gb|ADO41674.1| Putative HTH-type transcriptional regulator rrf2-like protein
[Ketogulonicigenium vulgare Y25]
Length = 153
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+T++ Y ++ LM A RI +IA + FL IL L AG++ ++RG
Sbjct: 2 ITQKMKYALKALMVLADAKAEGIAAMRIEEIARRSDTPKRFLEHILLELRNAGVIASIRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKAL 115
R GG L + + + + +++ + C + DC +C L +
Sbjct: 62 RAGGYTLIKEPEAVQLSQMLRLIDGPIAPLPCLSRSAYQRCEDCSDEATCRLRRAFSEVF 121
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
++ ++ ++ L+ + + ++ +
Sbjct: 122 WSYLVIIDSLTLADLIAQPAVVAQVIAS 149
>gi|291278641|ref|YP_003495476.1| BadM/Rrf2 family transcriptional regulator [Deferribacter
desulfuricans SSM1]
gi|290753343|dbj|BAI79720.1| transcriptional regulator, BadM/Rrf2 family [Deferribacter
desulfuricans SSM1]
Length = 139
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T ++ Y I + A++ D + IA+ I + FL L L GIV + +G
Sbjct: 1 MNVTSKSIYAIIAVYELALNKDKFIKSDVIAKKYNIPKRFLEITLSELKTNGIVISKKGG 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + ++I+I D++ TE V C + +C +V
Sbjct: 61 GGGFALKKLPEEISIFDIITITENDLKVFNCSKFLEKS-----TCNTFTVFENLNTEIIS 115
Query: 121 VLTQYSIECLVRNRS 135
+L +I+ ++ +
Sbjct: 116 LLKNKTIQDIINENT 130
>gi|269956765|ref|YP_003326554.1| BadM/Rrf2 family transcriptional regulator [Xylanimonas
cellulosilytica DSM 15894]
gi|269305446|gb|ACZ30996.1| transcriptional regulator, BadM/Rrf2 family [Xylanimonas
cellulosilytica DSM 15894]
Length = 168
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 60/145 (41%), Gaps = 5/145 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +T + DY +R+ + A + ++A A I ++ IL L + G+VET R
Sbjct: 1 MRITAKIDYAVRLCVELAARYDGGGYAKSDELATAQQIPANYVLGILNSLKQTGLVETRR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG RL QI + DV++A + + P + + V A
Sbjct: 61 GADGGARLASDPAQIAVADVIRAIDGPLASVGGRNVEDVSYPGSSA-PVRDVWVALRCAM 119
Query: 119 FDVLTQYSIECLVRN--RSSIKKIF 141
VL ++ ++ + ++++
Sbjct: 120 RSVLEVVTLADVLAGAMPAPVQELL 144
>gi|149202631|ref|ZP_01879603.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius sp. TM1035]
gi|149143913|gb|EDM31947.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius sp. TM1035]
Length = 153
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ A+ + I+ IS +L ++ L +A +V++VRG
Sbjct: 1 MKLSTKGRYAMVALVDIALQPAGSVVTLGDISRRQDISLPYLEQLFVKLRRADLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL RPA +I + D++ A +E+ + +
Sbjct: 61 PGGGYRLMRPASEIRVTDILAAVDETIDALHKGAGASGAASGSRAQSMTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + + N
Sbjct: 121 YVFLHQTRLSDVAGN 135
>gi|50428399|dbj|BAD30045.1| hypothetical protein [Rhodococcus opacus]
Length = 159
Score = 93.4 bits (231), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ + + + + P +++AE +S+ +L K LQ L +AG+V GR
Sbjct: 7 MKLSGGVEWALHCCVVLS-QAESPVPTARLAELHGVSKTYLAKHLQSLARAGLVHPTEGR 65
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R + IT+LDVV+A + + C A+ C +CG+ V+
Sbjct: 66 DGGYVLTRAPEAITVLDVVQAVDGTEPAFRCTEIRRQGVLAAPPEQC--RSACGIAKVMA 123
Query: 113 KALNAFFDVLTQYSIECL 130
A A+ L+ +I L
Sbjct: 124 GAEQAWRASLSGVTIADL 141
>gi|154503497|ref|ZP_02040557.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149]
gi|153795597|gb|EDN78017.1| hypothetical protein RUMGNA_01321 [Ruminococcus gnavus ATCC 29149]
Length = 132
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR+++Y A +++E IS+ F++KI++ L AGI+ G
Sbjct: 1 MQLNIATDYAIRIVIYMAKQR-RIVSSRELSENLKISQPFIYKIMRKLNHAGILAINTGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFF 119
GG L + +QI + +++ E + C + C +C L K F
Sbjct: 60 HGGYILQKETEQINLFEIMDTMERTMKWNRCLEDDRYCSCFATEACRLRETYLKMQEHFE 119
Query: 120 DVLTQYSIECLVR 132
+ L + +I+ +++
Sbjct: 120 NELKETTIQKIIK 132
>gi|291085972|ref|ZP_06571283.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220]
gi|291069042|gb|EFE07151.1| transcriptional repressor NsrR [Citrobacter youngae ATCC 29220]
Length = 117
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
IS++ E +S + KI+ L +AG V +RG+ GG+RL +PA I I DVV+
Sbjct: 1 MTSISEVTEVYGVSRNHMVKIINQLSRAGFVTAIRGKNGGIRLGKPAKAIGIGDVVREL- 59
Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
E + C + C + +C L L KA+ +F L Y++ LV + K+
Sbjct: 60 EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLL 114
>gi|221639874|ref|YP_002526136.1| BadM/Rrf2 family transcriptional regulator [Rhodobacter sphaeroides
KD131]
gi|221160655|gb|ACM01635.1| Transcriptional regulator, BadM/Rrf2 family [Rhodobacter
sphaeroides KD131]
Length = 155
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+ + Y + L+ A+ + ++++++ IS +L ++ L +AG+VE V
Sbjct: 1 MKLSTKGRYAMVALVDLALAQKSGNELVSLAEVSKRQDISLPYLEQLFVKLRRAGLVEAV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALN 116
RG GG +L R A+ I + ++++A EE+ + +
Sbjct: 61 RGPGGGYKLARAAESIRVSEIMEAVEETVNAMHTGAGASGGVSGSRAQSLTNRLWEGLSA 120
Query: 117 AFFDVLTQYSIECLVRNR 134
+ L Q + +++N
Sbjct: 121 HVYVFLHQTRLSDIIKNE 138
>gi|84516301|ref|ZP_01003661.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Loktanella vestfoldensis SKA53]
gi|84509997|gb|EAQ06454.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Loktanella vestfoldensis SKA53]
Length = 153
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 63/135 (46%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D +++I++ IS +L ++ L ++G+V++VRG
Sbjct: 1 MKLSTKGRYAMVALADLALQPADALVNLTEISKRQDISLPYLEQLFVKLRRSGLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I + +++ A +E+ A + LT+ +
Sbjct: 61 PGGGYRLSRPASEIRVAEILGAVDETVSAMHKGAGASGGASGSRAQSLTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 YVFLHQARLSDVVSN 135
>gi|284040273|ref|YP_003390203.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
74]
gi|283819566|gb|ADB41404.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
74]
Length = 161
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 55/130 (42%), Gaps = 5/130 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K+ Y I+ L + P IS I+ I + FL IL L GI+++ +G+
Sbjct: 2 ISKKAKYAIKALKVLTEEYGKGPVLISYISAKENIPKKFLEAILLELRNHGILQSQKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNA 117
GG L ++ + V++ + C + + DC +C L ++ + +A
Sbjct: 62 GGYLLRVDPGRVNLAQVLRVIDGPIAPTPCVSFNFYVKCDDCNDEVTCALRPIMERVRDA 121
Query: 118 FFDVLTQYSI 127
V ++
Sbjct: 122 NLGVYENTTL 131
>gi|307151468|ref|YP_003886852.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
7822]
gi|306981696|gb|ADN13577.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7822]
Length = 143
Score = 93.4 bits (231), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L + +Y + L+ A D P +++I I E +L +I L + G++++ R
Sbjct: 1 MSLPSKVEYALLALLEMASQPDLKKPLTVNEITAKQPIPERYLEQIFASLRRGGLLKSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R IT+L++V E + + +D V + ++A A
Sbjct: 61 GSKGGYVLAREPQDITLLEIVSIIEGNRQI-----KENMDVSTVEMKLIQESWQQANQAA 115
Query: 119 FDVLTQYSIECLVRNRSS 136
+L QY++ L + R S
Sbjct: 116 QSILGQYTLLDLCKQRES 133
>gi|269215941|ref|ZP_06159795.1| Rrf2 family protein [Slackia exigua ATCC 700122]
gi|269130200|gb|EEZ61278.1| Rrf2 family protein [Slackia exigua ATCC 700122]
Length = 138
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L +RTDY R++ ++ ++++AE I F I LV AG++ RG
Sbjct: 1 MDLNRRTDYACRMIRAAYKNDGKVISVTKVAEQEGIPYAFARSIQNDLVHAGLLRAERGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+ L T+L V++ + + C + C C +V + A +
Sbjct: 61 RGGLALACDPSTTTLLHVLECVQGPISMTACTNDERF-CDRRDGCEFHAVWKHAESMLKA 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
+++ L R+ + ++
Sbjct: 120 YYASITLDDLFRHGRNPRR 138
>gi|300114068|ref|YP_003760643.1| BadM/Rrf2 family transcriptional regulator [Nitrosococcus watsonii
C-113]
gi|299540005|gb|ADJ28322.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus watsonii
C-113]
Length = 140
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R Y I +M A+ + IA+ IS +L +I L G+VE +RG
Sbjct: 1 MRFSNRPRYAISAMMNLALVKQQETVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
GG L R A++ITI +++ A + + +
Sbjct: 61 PGGGYHLTRTAEKITIAEIIAAVDKQPGKLNPLAIATNSVSEAER--------LWHDFST 112
Query: 117 AFFDVLTQYSIECLVRN 133
+D L Q ++ L +
Sbjct: 113 RLYDFLNQITLADLAQR 129
>gi|83955454|ref|ZP_00964085.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Sulfitobacter sp. NAS-14.1]
gi|83840098|gb|EAP79273.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Sulfitobacter sp. NAS-14.1]
Length = 156
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPADRLVNLGDIAARQSISLPYLEQLFVKLRRAELVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA I ++D++ A +E A + LT+ +
Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVANE 136
>gi|167033277|ref|YP_001668508.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
GB-1]
gi|166859765|gb|ABY98172.1| transcriptional regulator, BadM/Rrf2 family [Pseudomonas putida
GB-1]
Length = 179
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/145 (26%), Positives = 64/145 (44%), Gaps = 12/145 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ + + +AE + + +L K+ L +A +V
Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGDSRESSVRDLAELQGVPQEYLAKVFTKLARAKLVVAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG L RP+D+IT+LD+V A + + +C F G+C +
Sbjct: 61 EGVRGGFHLARPSDEITVLDIVNAIDGPKKIFDCREIRERCTLFDGAAPGWATEGTCAIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLVRN 133
+V+ A + L Q +I L R
Sbjct: 121 AVMLGAQKRMEEALAQQTILDLARR 145
>gi|157149110|ref|YP_001456429.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895]
gi|157086315|gb|ABV15993.1| hypothetical protein CKO_04949 [Citrobacter koseri ATCC BAA-895]
Length = 167
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI LM + +IA+ + +L KI L KAG+V ++ G+
Sbjct: 5 SSGVEYGIHSLMCMVDSKGDARDMSVREIADLQSVPYDYLAKIFTRLSKAGLVRSIEGKG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L RPA+ IT+LDVV A + + EC F G CG+ SV+
Sbjct: 65 GGFQLARPAEHITVLDVVNAIDGDKRIFECREIRQRLAVFDEQPPAWACEGICGVRSVMD 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L Q++I L R
Sbjct: 125 MAQQRMEEALGQHTILDLARK 145
>gi|329769741|ref|ZP_08261142.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325]
gi|328838103|gb|EGF87721.1| hypothetical protein HMPREF0433_00906 [Gemella sanguinis M325]
Length = 138
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L++ + D +A + + + KI+ L K G++E+ +G+ G+
Sbjct: 3 TKFSVALHILIFIS-ETDKIVSSELLANSVNTNSSHIRKIIALLKKGGLIESQQGK-TGM 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
L + IT+ DV + + + +CP+ + L V +A +AF++ L
Sbjct: 61 ALAKSTKDITLADVYQIVYPNKHLVNIHEGANKECPVGNNIENLLQPVFNEAQDAFYNKL 120
Query: 123 TQYSIECLVRN 133
++E L++
Sbjct: 121 ASKTLEQLIKE 131
>gi|167628038|ref|YP_001678538.1| transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167598039|gb|ABZ88037.1| putative transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 140
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+LT TDY +R+L+ + + + E I KI+ L +E+ +GR
Sbjct: 1 MNLTSFTDYSLRILIILGSNPKQKYKTKDLVEILDIKLNHATKIINKLSNLNYIESYKGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGV + + I + +VK E + ECF K CPL+ +C L +L +A N F
Sbjct: 61 FGGVSISQATYNIKLSTIVKEL-EPMNIVECFDKDKATCPLIPNCKLKFILNQASNDFIA 119
Query: 121 VLTQYSIECLVR 132
L Y +
Sbjct: 120 RLNDYRFIDICN 131
>gi|325971574|ref|YP_004247765.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Spirochaeta sp. Buddy]
gi|324026812|gb|ADY13571.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta sp. Buddy]
Length = 138
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 6/134 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R YG+R+L+ A H+ + P ++ +A+ +SE +L ++ L + G + +V+G
Sbjct: 1 MKISTRGRYGLRLLVDIAEHSNEGPIALTVVAKRQDLSEKYLQQVALLLTRGGFLTSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAF 118
GG L R + I DV+ E + CF + V +K
Sbjct: 61 SGGGYLLERSPASMMIYDVLDLLEGNI----CFEEPVQGEENAIERVIRLHVYQKLDQEV 116
Query: 119 FDVLTQYSIECLVR 132
V ++ + +
Sbjct: 117 KKVFEGLTLADVTK 130
>gi|85709850|ref|ZP_01040915.1| predicted transcriptional regulator [Erythrobacter sp. NAP1]
gi|85688560|gb|EAQ28564.1| predicted transcriptional regulator [Erythrobacter sp. NAP1]
Length = 144
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ DY + + A H D +++A + + +++ L AG++ +VRG
Sbjct: 1 MRLSNLADYAVITMCQAATHCGDGRVSAAELASETGLPVPTVQRLVSKLTSAGLLRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG++L RPA IT+ D+V+A E + C +C C +
Sbjct: 61 AGGGLQLGRPAAAITVADIVEAVEGPIALTACVD--HKECEHEARCSMKPHWPIINAKLR 118
Query: 120 DVLTQYSIECL 130
L + ++E L
Sbjct: 119 GALAEVTLEHL 129
>gi|116669235|ref|YP_830168.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
gi|116609344|gb|ABK02068.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
Length = 149
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 2/126 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + D +R +M A D IA+A + K + L + G+++ RG
Sbjct: 1 MKINAFADVSLRAMMVLAAAPDGNLLTTQSIADAVGTPYNHVSKAMARLRELGVIDVERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL + T+ +++ A+C + DCPL+ C L L +A AF+
Sbjct: 61 RNGGSRLNEAGRRATVGQLLRQLNTRTDPADCHS-LNGDCPLINECRLRGALARAREAFY 119
Query: 120 DVLTQY 125
L
Sbjct: 120 RELDDI 125
>gi|332665390|ref|YP_004448178.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter
hydrossis DSM 1100]
gi|332334204|gb|AEE51305.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter
hydrossis DSM 1100]
Length = 137
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++ Y I+ L+Y A + IA I + FL IL + +A +V + +G
Sbjct: 2 LSQKAKYAIKALIYLAKQEKGSLTKTADIASKSSIPKKFLELILIDMKRASLVSSKQGIG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + AD+I + D+ + + + + C + DCP +C + L + +
Sbjct: 62 GGYYLLKDADEINLADIYRLFDGAIAMLPCASLRFYEPCHDCPDEATCLIRKSLIQVRDQ 121
Query: 118 FFDVLTQYSIECLVRN 133
L + +I+ L +
Sbjct: 122 TLHALEKTTIKMLTKE 137
>gi|332528839|ref|ZP_08404813.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis
ATCC 19624]
gi|332041698|gb|EGI78050.1| BadM/Rrf2 family transcriptional regulator [Hylemonella gracilis
ATCC 19624]
Length = 190
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ + + ++ A+ P ++ I + IS +L ++ L +A +VE+ RG
Sbjct: 1 MRLSAKSRFAVAAMIDLALREAAGPVPLNSIGQRLQISLSYLEQLFSKLRRANLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R A ++++ D+++A E + + D G + +
Sbjct: 61 PGGGYTLGRSAQRVSVADIIRAVEGAQEL---MGEEVADAGEAGLQLTRDLWSGLSSRMM 117
Query: 120 DVLTQYSIECLVRNRSS 136
D + + L + S
Sbjct: 118 DHMEGIKLHQLCEEQRS 134
>gi|149202529|ref|ZP_01879501.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius
sp. TM1035]
gi|149143811|gb|EDM31845.1| Transcriptional Regulator, BadM/Rrf2 family protein [Roseovarius
sp. TM1035]
Length = 149
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 30/143 (20%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+T +T Y ++ LM A RI IA + FL IL L +AG++ + RG
Sbjct: 2 ITHKTKYALKALMVLADEKAGEGVALRIEDIAARSGAPKRFLEHILLDLKRAGLIGSRRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKAL 115
R GG + + ++++ +V++ + C + DC +C + +V
Sbjct: 62 RNGGYEMIKEPRRVSLAEVLRLIDGPMAPLPCLSRKAYQRCEDCTDEQTCRVRAVFGGFY 121
Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
+ ++ ++ L R+ ++
Sbjct: 122 ATYILMIESLTVADLQRDARPLE 144
>gi|332284501|ref|YP_004416412.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
gi|330428454|gb|AEC19788.1| BadM/Rrf2 family transcriptional regulator [Pusillimonas sp. T7-7]
Length = 164
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG VL + A + S +A + + + KIL+ L + +V + RG
Sbjct: 2 LRISKIIDYGTLVLTHMAGSPERMFSASDLASTLGLGQPTVSKILKLLGQHELVTSSRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L RPA QI++ D++ A EE F + EC A C + C + S ++
Sbjct: 62 RGGYILSRPASQISVADIIDALEEQPFGLTECTALPGA-CSVEAGCHIRSNWQRINAIVR 120
Query: 120 DVLTQYSIECLVR 132
L + S+ ++R
Sbjct: 121 HTLEEISVADMIR 133
>gi|223935695|ref|ZP_03627611.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
gi|223895703|gb|EEF62148.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
Length = 139
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ ++DY R ++ A H R+ +AE I +L +IL L IV+++R
Sbjct: 1 MKLSAKSDYAARAVIGLARHYQTGESLRVEDLAEGQGIPPNYLVQILIELKSQQIVKSLR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G+ GG L RP +I++ DV++ V + A CP L + +K A
Sbjct: 61 GKEGGYLLARPPAEISMADVLRCVHG--QVFDSPALSDPLCPPE----LRAAWQKLQKAV 114
Query: 119 FDVLTQYSIECLVRN 133
+ + L+
Sbjct: 115 DAAAESINFQQLLDQ 129
>gi|74316354|ref|YP_314094.1| BadM/Rrf2 family transcriptional regulator [Thiobacillus
denitrificans ATCC 25259]
gi|74055849|gb|AAZ96289.1| Protein of unknown function UPF0074 [Thiobacillus denitrificans
ATCC 25259]
Length = 154
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ + Y ++ L+Y A D P IA + +L KILQ L K ++ + RG
Sbjct: 1 MILSRTSQYAVQALIYMATQPDATPVLNKDIAAKLGVPAPYLAKILQSLAKGNLLFSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L ++IT++ + TE F C K C +C L
Sbjct: 61 RLGGFCLREGGEKITLMQIFLLTEGPAFTQSCLLGLKK-CSDETACPLHFRWVPVKKKII 119
Query: 120 DVLTQYSIECLVR 132
D+L + +++ L +
Sbjct: 120 DLLHETTLDKLAK 132
>gi|121606333|ref|YP_983662.1| BadM/Rrf2 family transcriptional regulator [Polaromonas
naphthalenivorans CJ2]
gi|120595302|gb|ABM38741.1| transcriptional regulator, BadM/Rrf2 family [Polaromonas
naphthalenivorans CJ2]
Length = 179
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 25/137 (18%), Positives = 55/137 (40%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ ++ + + ++ A+ + P ++ I IS +L ++ L ++G+VE+ RG
Sbjct: 1 MRLSTKSRFAVTAMIDIALQGNAGPISLADIGMRHKISVSYLEQLFSRLRQSGLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R ++ I++ D++ A E G +
Sbjct: 61 PGGGYSLSRSSESISVADIIGAIEVHPHAPGKGEKAFPGQAGSGEWMTQELWAALNAKMV 120
Query: 120 DVLTQYSIECLVRNRSS 136
+ + S+ L + +
Sbjct: 121 EHMQSISLRHLASEQRA 137
>gi|83942219|ref|ZP_00954680.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Sulfitobacter sp. EE-36]
gi|83846312|gb|EAP84188.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Sulfitobacter sp. EE-36]
Length = 156
Score = 93.1 bits (230), Expect = 1e-17, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPADRLVNLGDIATRQSISLPYLEQLFVKLRRADLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA I ++D++ A +E A + LT+ +
Sbjct: 61 PGGGYRLGRPASDIRVVDILAAVDEKVDAMHVGAGASGGSSGSRAQSLTNRLWEGLSAQV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V N
Sbjct: 121 YVFLHQTRLSDVVANE 136
>gi|257452761|ref|ZP_05618060.1| hypothetical protein F3_06819 [Fusobacterium sp. 3_1_5R]
gi|257466870|ref|ZP_05631181.1| hypothetical protein FgonA2_05470 [Fusobacterium gonidiaformans
ATCC 25563]
gi|315918018|ref|ZP_07914258.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
gi|317059302|ref|ZP_07923787.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313684978|gb|EFS21813.1| conserved hypothetical protein [Fusobacterium sp. 3_1_5R]
gi|313691893|gb|EFS28728.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
25563]
Length = 137
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L+Y + + D ++I+E I LF +IL+ + KAG++ +G
Sbjct: 1 MRLKNEVEYVFRILLYLSKYGKDRVISSTEISEKEQIPHLFSLRILKKMEKAGLLSIQKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + IT+ ++ E V +C + K G C + + F
Sbjct: 61 AKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVSDPKSCSLRGGRCSVHRAMALIEKEFI 120
Query: 120 DVLTQYSIECLVRNR 134
+ L +Y+ + L
Sbjct: 121 EHLAKYNFQDLSDEN 135
>gi|169828688|ref|YP_001698846.1| hypothetical protein Bsph_3207 [Lysinibacillus sphaericus C3-41]
gi|168993176|gb|ACA40716.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 161
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 6 RTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+Y + L+Y + + I ++E +SE +L K+L L KAGIV +V G +GG
Sbjct: 1 MVEYALHSLVYLIDVPPEESIGIKDLSEFQGLSETYLSKVLGKLSKAGIVSSVSGVKGGY 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFA---------SHKIDCPL-VGSCGLTSVLRKA 114
RL + + I+ DVVKA E + +C + CP C + V+ +A
Sbjct: 61 RLSKRPEDISFWDVVKAVEGESPIFQCKNIKANFANKTGNCDSCPSATSDCTINIVMLEA 120
Query: 115 LNAFFDVLTQYSIE 128
+ L +I
Sbjct: 121 EEQMRNYLRGKTIA 134
>gi|110679918|ref|YP_682925.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
114]
gi|109456034|gb|ABG32239.1| transcriptional regulator, putative [Roseobacter denitrificans OCh
114]
Length = 157
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 56/136 (41%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ D + IA IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALADIAMQPQDKLVSLGDIATRQAISLAYLEQLFVKLRRAELVASVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL R I +++++ A +E+ A + LT+ +
Sbjct: 61 PGGGYRLTRSPSDIRVVEILSAVDETVDAMHKGAGASGGASGSQAQSLTNRLWESLSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVIANE 136
>gi|256424752|ref|YP_003125405.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
DSM 2588]
gi|256039660|gb|ACU63204.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
DSM 2588]
Length = 144
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y IR +++ A + I IA+ E F+ KILQ L + G+V++++G
Sbjct: 2 FSKTCEYAIRAMIFIAQKSKDGSKIGIRDIAKGIDSPEYFIAKILQELGRKGVVQSMKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L A + ++ +VKA + + C K C C L K +
Sbjct: 62 TGGFYLDNSARKTSLATIVKAVDGDNIFSGCGLGLKQ-CSDKHPCPLHHEFTKIRKDITN 120
Query: 121 VLTQYSIECLVRN 133
+L + + L
Sbjct: 121 MLNKTRVGDLQEE 133
>gi|251798602|ref|YP_003013333.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247546228|gb|ACT03247.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 144
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L I D N IA + + + + ++L L KAG+V+ G
Sbjct: 1 MKISSRFSIAVHILSLLEISKDAHNTSEWIAGSVNTNPVIIRRLLGQLKKAGLVQVRAG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LD+ +A + E + DCP+ S L VL+K+ +
Sbjct: 60 TGGSYLTKEMSEITLLDIFRAVDVVEEGQLFHIHEGPNPDCPVGASIQVVLELVLKKSQD 119
Query: 117 AFFDVLTQYSIECLVRN 133
A VL Q ++E LV +
Sbjct: 120 AMESVLAQITLEELVAD 136
>gi|295401043|ref|ZP_06811017.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|312112181|ref|YP_003990497.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y4.1MC1]
gi|294976836|gb|EFG52440.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|311217282|gb|ADP75886.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y4.1MC1]
Length = 146
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L A+ + IA + + + + +++ L KAG V+ G
Sbjct: 1 MKISSRFTVAVHILALLALEKNAHCTSEWIAGSVNTNPVVVRRVIGQLKKAGFVQVRPG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LD+ +A E E + + CP+ + L +L +A
Sbjct: 60 TGGAFLTKDTQEITLLDIYRAVEVVEEGELFQIHEHPNPQCPVGANIQAVLEVILHRAQA 119
Query: 117 AFFDVLTQYSIECLV 131
A +VL + + +V
Sbjct: 120 AMENVLQEIRLHDIV 134
>gi|89054857|ref|YP_510308.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
gi|88864406|gb|ABD55283.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
Length = 152
Score = 92.7 bits (229), Expect = 1e-17, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + + A+ D +S +++ +S +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVAMADLALQTGDVLTPLSDLSKRQNVSLPYLEQLFVKLRRAELVVSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I ++++ +A +E+ A + LT+ +
Sbjct: 61 PGGGYRLARPATEIRVVEIFEAVDETVSALHMGAGATGGGSGSRAQSLTNRLWEGFSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V+N
Sbjct: 121 YVFLHQTRLSDVVKNE 136
>gi|256847668|ref|ZP_05553113.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
gi|256715357|gb|EEU30333.1| transcriptional regulator [Lactobacillus coleohominis 101-4-CHN]
Length = 146
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R I +L Y I+ D IA + S + + +I+ L KAG+++T G
Sbjct: 1 MKVSTRFSDAIHILAYLNIYQDTKLSSENIAASVMTSPVVVRRIMGALQKAGLIQTTHGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + I++LD+ A E + + + +C + G+ L ++ NA
Sbjct: 61 PNPH-LAKQPSAISLLDIYYAVEGNRQLFSVDPTTNPECIVGGNIQKVLDQTYQEVQNAA 119
Query: 119 FDVLTQYSIECLVRN 133
F L++ ++E ++ +
Sbjct: 120 FGRLSRITLEDIIND 134
>gi|154148684|ref|YP_001406497.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis
ATCC BAA-381]
gi|153804693|gb|ABS51700.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis
ATCC BAA-381]
Length = 137
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 72/139 (51%), Gaps = 5/139 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + +++ A + + P + I+ I + FL KILQ L + GI+++ +G
Sbjct: 1 MLFTKASEYALLSMIFIARNKE-PVGVDAISNELKIPKSFLAKILQDLARDGILQSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
+GG L + +I++ ++V+ A ++ + EC ++++ CP C + + N
Sbjct: 60 KGGFLLAKKPLEISLNEIVQSAEKKQNSIFEC-SNNRASCPSNKGEICEIWHIFSGIQNK 118
Query: 118 FFDVLTQYSIECLVRNRSS 136
+L +++E ++ +
Sbjct: 119 VDAILDNFTLENFIKESNK 137
>gi|326203774|ref|ZP_08193637.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
papyrosolvens DSM 2782]
gi|325986214|gb|EGD47047.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
papyrosolvens DSM 2782]
Length = 148
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 62/138 (44%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YGI ++ A N + I+E IS+++L ++ L ++ +V +++
Sbjct: 1 MRISSKGRYGIASMICVAQLGRNGDFVTVISISEKLGISKIYLEQVFSLLKRSKLVSSIK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNA 117
G +GG +L + ++IT D+++A + E +TS V K +
Sbjct: 61 GSQGGYQLTKSPEKITAYDILQAV--EISLFEVTERSVSRQAEGIEKSITSLVWSKMDKS 118
Query: 118 FFDVLTQYSIECLVRNRS 135
+VL ++ LV
Sbjct: 119 ISEVLKNVTLTDLVDEAE 136
>gi|239990651|ref|ZP_04711315.1| putative transcriptional regulator [Streptomyces roseosporus NRRL
11379]
Length = 140
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Query: 10 GIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
+RVLM A+ ++A + K++ L G+++ RGR GG+ L
Sbjct: 2 ALRVLMRLAVAEGTEAPTTREVAATMRVPYTHAAKVVARLQHLGLLDARRGRGGGLTLTS 61
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+I +V+ E V EC CPL +C L LR A +AF+ L ++
Sbjct: 62 AGRSASIGSLVRELEGPEEVVEC--EGDTPCPLRSACRLRGALRGAQDAFYAALDPITVA 119
Query: 129 CLVRNRS 135
LV + +
Sbjct: 120 DLVASPT 126
>gi|304321528|ref|YP_003855171.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503]
gi|303300430|gb|ADM10029.1| Rrf2 family protein [Parvularcula bermudensis HTCC2503]
Length = 134
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 3/134 (2%)
Query: 14 LMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
+ A P + IA +S FL +IL+ L +AG+VE+ RG GG RL R A
Sbjct: 1 MADIATQEAATFPVTVQAIAARQRLSAPFLEQILRKLRRAGLVESRRGVNGGYRLARRAA 60
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECL 130
+I + +VV+A EE C + C + C + L S+ +
Sbjct: 61 EIPVSEVVRAVEEEIRSTACQPGAVLGCTGTSARCLTHHLWSGLDRHIESYLADISLADI 120
Query: 131 VRNRSSIKKIFNAG 144
++ + G
Sbjct: 121 ADKTYEAERAVDHG 134
>gi|226324474|ref|ZP_03799992.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758]
gi|225206922|gb|EEG89276.1| hypothetical protein COPCOM_02255 [Coprococcus comes ATCC 27758]
Length = 148
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 71/140 (50%), Gaps = 1/140 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+ +K++ YG+R L+ ++++ + ++ IAE IS +L ++ L KAGI+++V+G
Sbjct: 1 MNFSKKSRYGLRALIDLSVYSKESHVALAAIAERNSISPQYLEQVFAALRKAGIIKSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L +PA +I++ ++++A E + + E + + V+ +
Sbjct: 61 PQGGYLLAKPATKISVAEILRALEGDYLIEEEDVEGAENGRAAAQAVQSEVIERLNRGLQ 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
D+L + L + +
Sbjct: 121 DILENLFLSDLEQKYQEYSE 140
>gi|118469239|ref|YP_889225.1| rrf2 family protein (transcriptional regulator) [Mycobacterium
smegmatis str. MC2 155]
gi|118170526|gb|ABK71422.1| rrf2 family protein (putative transcriptional regulator)
[Mycobacterium smegmatis str. MC2 155]
Length = 156
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + +Y +R ++ A + + + +A+A I FL IL L +V + RG
Sbjct: 1 MRMSAKAEYAVRAMVQLATVSDGELLKTDDLAKAQGIPAQFLVDILSDLRTDRLVRSHRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG L RPAD I+I DV++ + + + LT V R +
Sbjct: 61 RDGGYALARPADAISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMR 119
Query: 120 DVLTQYSIECLVR 132
VL + S+ +
Sbjct: 120 SVLEETSLSDVAA 132
>gi|15807194|ref|NP_295923.1| hypothetical protein DR_2201 [Deinococcus radiodurans R1]
gi|6460004|gb|AAF11750.1|AE002053_5 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 155
Score = 92.7 bits (229), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ Y + L + + + +I+++ I +L +IL L GIV++ +G
Sbjct: 1 MRLSATDVYAFQALGFLGTQDAERWVPSEEISDSTGIHRPYLVRILAALSAKGIVKSKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTS-VLRKALNA 117
GG L R I++ +VV+A + C + + C G C + V + +A
Sbjct: 61 IGGGYALARKPRLISLCEVVRAVDGPVAPLSCISLNWHEPCAEEGRCHARATVYTRMRDA 120
Query: 118 FFDVLTQYSIECLV 131
VL ++S+E LV
Sbjct: 121 MLGVLQEFSVEDLV 134
>gi|254411526|ref|ZP_05025303.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes
PCC 7420]
gi|196182027|gb|EDX77014.1| Transcriptional regulator superfamily [Microcoleus chthonoplastes
PCC 7420]
Length = 145
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 67/142 (47%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +T+Y + L+ H P +I QIA I + +L ++L L + +V + R
Sbjct: 1 MELSCKTEYTLLALLELTGHYNQGEPLQIRQIAAQQNIPDRYLEQLLATLRRGNLVRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R +IT+LD++ + S + + + S + ++ +
Sbjct: 61 GAKGGYILAREPWRITLLDIMNCLDGSTATT---SGSQTNAITEASAIVQETWQEVRDRT 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
D+L Y+++ L ++ +++
Sbjct: 118 NDILRDYTLQDLWEKLNNRQQL 139
>gi|163858175|ref|YP_001632473.1| RF2 family protein [Bordetella petrii DSM 12804]
gi|163261903|emb|CAP44205.1| probable RF2 family protein [Bordetella petrii]
Length = 162
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +AG+VET G
Sbjct: 1 MILKSQVEWALHSCAILAGLPPGRYLSTKALAELHGVPKEYLSKALQALSQAGLVETTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL RP +IT LD+V+A E C C C + V+ +
Sbjct: 61 PSGGYRLARPGSEITFLDIVEAVEGRASTFACNNIRVNNPCRPSGHCDSKPCAIARVMWR 120
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A+ + L + ++ ++
Sbjct: 121 ADEAWRNALREVTLADVID 139
>gi|218682838|ref|ZP_03530439.1| Rrf2 family transcriptional regulator [Rhizobium etli CIAT 894]
Length = 148
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T++ Y +R L A + P IS IA I + FL +IL L GIV + RG++
Sbjct: 2 ITQKAKYALRALTALADADADEPVMISDIAAQQKIPKKFLEQILLDLKHHGIVVSRRGKQ 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA IT ++++ + C + DC +C + V K +A
Sbjct: 62 GGYLLLKPAHTITFGEILRIVDGPIAPLPCLSITAYRRCDDCDGEQNCQIRHVFAKVADA 121
Query: 118 FFDVLTQYSIEC 129
VL +I
Sbjct: 122 TRKVLFSTTIAD 133
>gi|225849877|ref|YP_002730111.1| Rrf2 family protein [Persephonella marina EX-H1]
gi|225646286|gb|ACO04472.1| Rrf2 family protein [Persephonella marina EX-H1]
Length = 142
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ IR ++Y A + D I +IAE +S FL K LQ LVK G++E+ RG
Sbjct: 2 LSVACKDSIRAMIYIAKYGDRNSFLSIHKIAEDLDLSFYFLSKNLQKLVKVGLLESYRGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL +P DQI +LD++ A + + F +C C C + + N ++
Sbjct: 62 NGGVRLAKPPDQIKLLDIIDAIDGTEFFNKCILGFD-TCSDENPCVIHHKWAEKRNEIYE 120
Query: 121 VLTQYSIECLVRN 133
+ ++ V +
Sbjct: 121 MFFGTTLSEAVED 133
>gi|241668545|ref|ZP_04756123.1| transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254877080|ref|ZP_05249790.1| transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25015]
gi|254843101|gb|EET21515.1| transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25015]
Length = 136
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A +N P ++IAE ++ + K+L L + IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L IT+LDVVKA E+ + EC HK C L GSC +++ R + D
Sbjct: 62 EGGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHKK-CSL-GSCMVSNYWRVLNSQLLD 119
Query: 121 VLTQYSIECLVRNR 134
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133
>gi|326799915|ref|YP_004317734.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Sphingobacterium sp. 21]
gi|326550679|gb|ADZ79064.1| transcriptional regulator, BadM/Rrf2 family [Sphingobacterium sp.
21]
Length = 145
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y +R + Y A H I +IA+A E FL KILQ L K G++++V+G
Sbjct: 4 FSKTAEYAMRAVFYIAQRSHEGQRTGIKEIADAVNSPEAFLAKILQKLSKVGLIQSVKGP 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + D+V A E C C C L +K N
Sbjct: 64 NGGFYIDTSGFSRPLADIVIAVEGDTIFKGCGMGLSY-CSEEYPCPLHGEFKKVRNQITL 122
Query: 121 VLTQYSI----ECLVRNRSSIKK 139
+L +I L++ + ++ K
Sbjct: 123 MLRNTTIGQFNAELIKGQLTLNK 145
>gi|163784477|ref|ZP_02179349.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1]
gi|159880255|gb|EDP73887.1| hypothetical protein HG1285_10100 [Hydrogenivirga sp. 128-5-R1-1]
Length = 143
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
LT IR ++Y A +D I +IAE +S FL KIL LVK +E+ RG
Sbjct: 2 LTTACKDAIRAMIYIAKKQKKSDSFISIKEIAENLNLSFYFLSKILHKLVKDRFLESYRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV+L RP + I++ D++ + + + +C K +C C + +
Sbjct: 62 PNGGVKLARPMENISLYDIILSIDGNNVFTQCILGFK-ECSDTKPCAVHEKWVPERERIY 120
Query: 120 DVLTQYSIE 128
+ ++
Sbjct: 121 QLFKNTTLA 129
>gi|157736632|ref|YP_001489315.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
RM4018]
gi|315635796|ref|ZP_07891058.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
JV22]
gi|157698486|gb|ABV66646.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
RM4018]
gi|315479775|gb|EFU70446.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
JV22]
Length = 132
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT++++Y + L+ A + + P + +++ IS+ FL KI+Q L K +V + RG
Sbjct: 1 MLLTRKSEYALLSLISIAKNKE-PKNVDVLSKELDISKSFLAKIMQNLAKHELVISHRGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
GG L +P D+ITIL++V+A EE + A CP SC + +L
Sbjct: 60 NGGFVLKKPLDEITILEIVEAAEERVPMVFECAPSLQSCPNNKAKSCIIWPLLNNLQFKV 119
Query: 119 FDVLTQYSIECLV 131
D L++ +++ +
Sbjct: 120 NDFLSKLTLKDIA 132
>gi|118464782|ref|YP_880680.1| StaS protein [Mycobacterium avium 104]
gi|118166069|gb|ABK66966.1| StaS protein [Mycobacterium avium 104]
Length = 159
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + +Y +R ++ A D + +A+A I FL IL L +V + RGR
Sbjct: 1 MSAKAEYAVRAMIQLATVPDGTLVKTDDLAQAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RP I+I DV++ + + + LT V R + V
Sbjct: 61 GGYELARPGKDISIADVLRCIDGPLASVRDIGLGDLPYS-GPTAALTDVWRALRASMRLV 119
Query: 122 LTQYSIECLV 131
L + ++ +
Sbjct: 120 LEETTLADVA 129
>gi|167627991|ref|YP_001678491.1| transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597992|gb|ABZ87990.1| transcriptional regulator [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 136
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A +N P ++IAE ++ + K+L L + IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAENNLNPYSAAKIAETTGLNIPTVRKLLNQLSISNIVVSKRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L IT+LDVVKA E+ + EC HK C L GSC ++S + + D
Sbjct: 62 EGGYTLVDDPQNITVLDVVKAVEKDVNLTECCDLHKK-CSL-GSCMVSSYWKVLNSQLLD 119
Query: 121 VLTQYSIECLVRNR 134
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNK 133
>gi|257464248|ref|ZP_05628627.1| hypothetical protein FuD12_10461 [Fusobacterium sp. D12]
gi|317061765|ref|ZP_07926250.1| conserved hypothetical protein [Fusobacterium sp. D12]
gi|313687441|gb|EFS24276.1| conserved hypothetical protein [Fusobacterium sp. D12]
Length = 136
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L+Y + + + ++I+E I LF +IL+ + KAG+V +G
Sbjct: 1 MRLKNEVEYVFRILLYLSRYGKERIISSTEISEKEQIPHLFSLRILKKMEKAGLVSIQKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + IT+ ++ E V +C K G C + + F
Sbjct: 61 AKGGYSLKKDPKDITLKTAIECIEGDIIVKDCVRDPKSCSLRSGRCSVHRAMAVIEKEFI 120
Query: 120 DVLTQYSIECLVRNR 134
+ L +Y+ + L
Sbjct: 121 EHLAKYNFQDLSDEN 135
>gi|229062524|ref|ZP_04199837.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
gi|228716807|gb|EEL68498.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
Length = 168
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y I +AE +SE FL K+ L KAGIV +V G
Sbjct: 1 MQYSVGVEYALHCLVYLVTAPSKESVGIKDLAEFQGLSETFLSKVFGKLSKAGIVSSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-----------FASHKIDCPLVGSCGLT 108
+GG RL + + I+ DV++A E + +C + SC +
Sbjct: 61 VKGGYRLAKSPEDISFWDVIEAVEGPKPIFQCKNIVQNGLLYRDKTCNSCESSNSSCTIN 120
Query: 109 SVLRKALNAFFDVLTQYSIE 128
++ +A + L + ++
Sbjct: 121 LIMLEAEEHMREFLRKKTLA 140
>gi|209545272|ref|YP_002277501.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|209532949|gb|ACI52886.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 180
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 71/149 (47%), Gaps = 13/149 (8%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
T+Y + L++ + + P +A+ I F+ K+L L KAG++E G RGG RL
Sbjct: 8 TEYVLHSLLWLVGNPE-PVSSLDLADLQNIPAAFVAKLLPRLEKAGLLEASEGLRGGYRL 66
Query: 67 CRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNA 117
RPA+ I++L VV A E + C F G CG+ +V+ +A A
Sbjct: 67 ARPAEDISVLAVVDAVEGRKSLFNCQEIRGRCALFDERPPRWATQGVCGIHAVMLRAEQA 126
Query: 118 FFDVLTQYSIECL---VRNRSSIKKIFNA 143
+ + S+ L VR+++ + + +A
Sbjct: 127 MRQEMARTSLADLARSVRDKAPLPFLGDA 155
>gi|126650609|ref|ZP_01722832.1| transcriptional regulator [Bacillus sp. B14905]
gi|126592765|gb|EAZ86764.1| transcriptional regulator [Bacillus sp. B14905]
Length = 140
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +K T+Y + +++ + +A+ +S +L KIL LVKAG++E+ G
Sbjct: 2 MKYSKATNYALHTMVFLTNTPKGKSMNVETLADMQKLSPTYLSKILTKLVKAGLIESNPG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG R+ + +++ LDV+ A E + C + H+ G C + V+ A N
Sbjct: 62 VNGGYRISKRPQEVSFLDVIYAIEGQTSLFSCSSDHEDSFHNEG-CLIEQVMVDAENNMK 120
Query: 120 DVLTQY 125
+ L++
Sbjct: 121 EELSKK 126
>gi|290968345|ref|ZP_06559886.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
gi|290781620|gb|EFD94207.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
Length = 153
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 60/139 (43%), Gaps = 4/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R+++Y A + + +A+ I E FL KI++ L AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMVLYLASFPEGTKVTGAALADKQNIPERFLLKIMRSLTAAGIMKSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
GG L R A +IT+ D+++A E + C C S C + +
Sbjct: 61 VEGGFSLNRSAKEITLFDIIEAVEGQTELQRCLHDMG-SCTRSCSGMCSIYTAFADIQRD 119
Query: 118 FFDVLTQYSIECLVRNRSS 136
L + L +
Sbjct: 120 LAMKLKSINFYDLAAQEAK 138
>gi|94985506|ref|YP_604870.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
geothermalis DSM 11300]
gi|94555787|gb|ABF45701.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
geothermalis DSM 11300]
Length = 155
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ Y + L + +I+EA + +L +IL L GIV++ +G
Sbjct: 1 MRLSATDVYAFQALGFLGSQELTRWVSSEEISEATGVHRPYLVRILAALTAKGIVKSKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTS-VLRKALNA 117
GG L R I++ +VV+A + C + + C C + V ++ +A
Sbjct: 61 IGGGYALSRKPRLISLCEVVRAIDGPVAPLSCISLNWHEPCVEEARCHARATVYQRMRDA 120
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL ++S+E LV +
Sbjct: 121 MLAVLQEFSVEDLVIDARQ 139
>gi|313498421|gb|ADR59787.1| BadM/Rrf2 family transcriptional regulator [Pseudomonas putida
BIRD-1]
Length = 179
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ + + +AE + + +L K+ L +AG+V
Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RPA QI++LD+V A + + +C F G+C +
Sbjct: 61 EGVRGGFRLARPAAQISVLDIVNAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLV 131
+V+ A + L Q ++ L
Sbjct: 121 AVMLGAQKRMEESLAQQTVLDLA 143
>gi|73662780|ref|YP_301561.1| transcriptional regulator [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72495295|dbj|BAE18616.1| putative transcriptional regulator [Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305]
Length = 127
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 8/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +K T+Y + L++ +N + +A+A IS +L KIL LVK G++
Sbjct: 1 MKYSKATNYALHALLFMIKNNGDVQRIPVQDLAKALGISTTYLSKILTRLVKVGVISASS 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG +L +TI +V+ + + E SC + ++ +A A
Sbjct: 61 GAKGGYQLSLNWQDVTIYEVITTIDGKQSLFE------DSFNHGDSCPINKLMIEAEQAL 114
Query: 119 FDVLTQYSIECLV 131
L Q ++ L+
Sbjct: 115 IGSLKQKKLKDLI 127
>gi|332183985|gb|AEE26239.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida 3523]
Length = 136
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A ++ P ++I+E+ ++ + K+L L A IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKISESTGLNIPTVRKLLNQLSLANIVTSKRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +IT+LD+VK E+ + EC + C L G+C ++ + +
Sbjct: 62 EGGYTLVSDPREITVLDIVKCVEKDVNLTECC-DLQKKCSL-GNCMVSGYWKVLNSQLLG 119
Query: 121 VLTQYSIECLVRNRSS 136
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNKDK 135
>gi|29654658|ref|NP_820350.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 493]
gi|154705843|ref|YP_001424796.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111]
gi|161829979|ref|YP_001597203.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331]
gi|29541926|gb|AAO90864.1| rrf2 family protein [Coxiella burnetii RSA 493]
gi|154355129|gb|ABS76591.1| Rrf2 family protein [Coxiella burnetii Dugway 5J108-111]
gi|161761846|gb|ABX77488.1| FeS assembly SUF system regulator [Coxiella burnetii RSA 331]
Length = 153
Score = 92.3 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +++ DY V+ A +QIA +S + K+L+ L + +V + RG
Sbjct: 2 LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L R I+I D++ A + + EC C CG+ + FD
Sbjct: 62 NGGYQLARAPQSISIADIITAVDGKPAMTECSRDANR-CEHNAVCGVRENWQLINTLIFD 120
Query: 121 VLTQYSIECLVRNRSSIKKI 140
VL ++ + + +K+I
Sbjct: 121 VLDSLNLADM--QKPLLKRI 138
>gi|238918376|ref|YP_002931890.1| transcriptional repressor NsrR [Edwardsiella ictaluri 93-146]
gi|238867944|gb|ACR67655.1| HTH-type transcriptional regulator NsrR [Edwardsiella ictaluri
93-146]
Length = 124
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A+ I+Q+ +S + KI+ L +AG V VRG+ GG+RL RPA +I I D
Sbjct: 3 ALPEGQMTSITQVTAVYGVSRNHMVKIINQLSRAGFVTAVRGKHGGIRLGRPASEIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
VV+ E + C + C + +C L VLR+A +AF L Q ++ L+ + +
Sbjct: 63 VVREL-EPLTLVNC---SQAFCHITPACRLKQVLRRATDAFLTELDQCTLADLIEHNPPL 118
Query: 138 KKIF 141
K+
Sbjct: 119 YKLL 122
>gi|154497763|ref|ZP_02036141.1| hypothetical protein BACCAP_01741 [Bacteroides capillosus ATCC
29799]
gi|150273261|gb|EDN00406.1| hypothetical protein BACCAP_01741 [Bacteroides capillosus ATCC
29799]
Length = 152
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L + ++ ++IAE+ + ++ +++ L AG++ + +G+
Sbjct: 1 MKYSTKLSDALHILAFLSMGAGQRITSAKIAESVKTNPAYIRQLMAKLKSAGMITSSQGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
L R D+IT+LDV +A E + + +C + L+ ++ A
Sbjct: 61 ANA-ELTRRPDEITVLDVYRAIEGNKPLLHWDIDTNPECGVGIYVQLSIADFYQEIQKAA 119
Query: 119 FDVLTQYSIECLVRNR-SSIKKI 140
+ +++ ++ + ++
Sbjct: 120 EQKMQTITLQDIIDRYGKKLDEL 142
>gi|126736370|ref|ZP_01752112.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. CCS2]
gi|126714191|gb|EBA11060.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. CCS2]
Length = 154
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 58/136 (42%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + +++I++ IS +L ++ L +AG+V++VRG
Sbjct: 1 MKLSTKGRYAMVALADLALQDGNALVNLTEISKRQDISLPYLEQLFVKLRRAGLVDSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL RPA I + +++ A +E+ + +
Sbjct: 61 PGGGYRLARPAADIRVSEILGAVDETVSAMHKGAGASGAASGSRAQSMTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + +V N
Sbjct: 121 YVFLHQARLSDVVSNE 136
>gi|121594469|ref|YP_986365.1| BadM/Rrf2 family transcriptional regulator [Acidovorax sp. JS42]
gi|120606549|gb|ABM42289.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax sp. JS42]
Length = 179
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 12/143 (8%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + +YGI L++ + + +AE + + +L K+ L +AG+V
Sbjct: 1 MSLYSAGVEYGIHCLLFLVDERGETRDSSVRDLAELQGVPQEYLAKVFTKLARAGLVAAT 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLT 108
G RGG RL RPA QI++LD+V A + + +C F G+C +
Sbjct: 61 EGVRGGFRLARPAAQISVLDIVHAIDGPKKIFDCREVRERCTLFDGSPPRWATEGTCAIH 120
Query: 109 SVLRKALNAFFDVLTQYSIECLV 131
+V+ A + L Q ++ L
Sbjct: 121 AVMLGAQKRMEESLAQQTVLDLA 143
>gi|326330461|ref|ZP_08196769.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
gi|325951736|gb|EGD43768.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
Length = 151
Score = 91.9 bits (227), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 13/151 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ + + + H P ++AE +S+ +L K LQ L +AGIV GR
Sbjct: 1 MKLSTGVEWSLHCCVVLS-HAPGPVASGRLAELLGVSKTYLAKHLQALARAGIVRPSEGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R D++T+LDVV+A E C A+ C CG+ V+
Sbjct: 60 DGGYELTRAPDEVTVLDVVQAVEGRRPAFRCTEIRQQGLLAAPPERC--RSMCGIAKVMA 117
Query: 113 KALNAFFDVLTQYSIECLVRNRS--SIKKIF 141
A A+ L +I L ++ +
Sbjct: 118 DAEEAWRASLAGVTIGDLSDRFDTGPMRDVL 148
>gi|150017088|ref|YP_001309342.1| BadM/Rrf2 family transcriptional regulator [Clostridium
beijerinckii NCIMB 8052]
gi|149903553|gb|ABR34386.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
beijerinckii NCIMB 8052]
Length = 137
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M TK T+Y + ++Y + +S +AE +S +L KIL LVKA ++E+ G
Sbjct: 1 MKYTKATNYALHTIVYMMENAKSEKLSVSALAEHFNLSTTYLSKILTQLVKADLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + I+ +DV+KATE + + C + C + V+ +A N
Sbjct: 61 ANGGYVLRKDMRSISFMDVIKATEGTGSLFVCNLNEN------SKCLIEKVMSEAENVLE 114
Query: 120 DVLTQYSIECLVRNRSSIK 138
+ L + L +N+S+ K
Sbjct: 115 NYLEDKKLYDLTQNKSNCK 133
>gi|292492144|ref|YP_003527583.1| Rrf2 family transcriptional regulator [Nitrosococcus halophilus
Nc4]
gi|291580739|gb|ADE15196.1| transcriptional regulator, Rrf2 family [Nitrosococcus halophilus
Nc4]
Length = 136
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R Y I +M A+ + IA+ IS +L +I L G+VE VRG
Sbjct: 1 MRLSNRPRYAISAMMNLALAKQPSSVTLGDIAQLDNISVSYLEQIFASLRHHGLVEGVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
GG L R A++ITI +++ A + + +
Sbjct: 61 PGGGYHLARAAEEITIAEIIAAVDKQPGKLNPLAIANNSVSEAER--------LWNDFSA 112
Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
+D L Q ++ L R +++
Sbjct: 113 RLYDFLNQITLADLTRRWPHLRQ 135
>gi|255262733|ref|ZP_05342075.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
R2A62]
gi|255105068|gb|EET47742.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
R2A62]
Length = 152
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + Y + L+ A+ + + +I++ IS +L ++ L + G+VE+VR
Sbjct: 1 MKLSTKGRYAMVALVDLALLQSDARLVTLGEISKRQDISLPYLEQLFVKLRREGLVESVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNA 117
G GG RL R + I ++D++ A +E+ A + L++ +
Sbjct: 61 GPGGGYRLARASSDIRVVDILGAVDETVSAMHKGAGASGAASGSRAQSLSNRLWEGLSAH 120
Query: 118 FFDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 VYVFLHQTRLSDVVSN 136
>gi|157363012|ref|YP_001469779.1| BadM/Rrf2 family transcriptional regulator [Thermotoga lettingae
TMO]
gi|157313616|gb|ABV32715.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga lettingae
TMO]
Length = 134
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T +++Y ++L+ A + P +S I + + F KI+ L +AGI+E+ RG
Sbjct: 1 MGITIKSEYAFKILLQIANCQANEPVSLSLILTDVNVPKEFAEKIMVSLKEAGIIESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNAF 118
R+GG RL + ADQIT L++V+A ++ + +C C SC + + +
Sbjct: 61 RKGGYRLTKSADQITALEIVRAVDDPDKLIKCTMDE-NCCSDPTSCTIRLKIWDNLKKSV 119
Query: 119 FDVLTQYSIECL 130
D L+ + L
Sbjct: 120 EDTLSSIKLSDL 131
>gi|89098510|ref|ZP_01171393.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
gi|89086755|gb|EAR65873.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
Length = 133
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 64/140 (45%), Gaps = 8/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + T+Y + +++ + + ++AE +S +L K+L L KAG++E+ G
Sbjct: 1 MKYSNATNYALHTMVHLMLEPGEGTVGVQELAEMQHLSPTYLSKVLTKLAKAGLIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG ++ R +I+ LDV+ A E + +C C + +V+R+A
Sbjct: 61 AKGGYKISRKKHEISFLDVIHAIEGETSLFDCS-------IHHEGCLIENVMRQAEENMK 113
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L + + + S +K
Sbjct: 114 SELASKLLIDIAKEAESQRK 133
>gi|212212264|ref|YP_002303200.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212]
gi|212010674|gb|ACJ18055.1| Rrf2 family protein [Coxiella burnetii CbuG_Q212]
Length = 153
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +++ DY V+ A +QIA +S + K+L+ L + +V + RG
Sbjct: 2 LKISRLADYATTVMTILASGKTERYSAAQIARTTPLSAATVSKVLKLLNEGKLVNSERGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L R I+I D++ A + + EC C CG+ + FD
Sbjct: 62 NGGYQLARAPQSISIADIIAAVDGKPAMTECSRDANR-CEHNAVCGVRENWQLINTLIFD 120
Query: 121 VLTQYSIECLVRNRSSIKKI 140
VL ++ + + +K+I
Sbjct: 121 VLDSLNLADM--QKPLLKRI 138
>gi|197119432|ref|YP_002139859.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
gi|197088792|gb|ACH40063.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
Length = 162
Score = 91.9 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L Y + I +AE ++ +L KI L K GIV +V G
Sbjct: 1 MQFSVGVEYALHSLFYLVNVPEGKTVGIRHLAELHGSTDSYLSKIFAKLRKTGIVRSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
+GG L R + I+ D+++A E + +C S C + V+
Sbjct: 61 VKGGYELARLPEAISFWDIIEAVEGPSYFFQCNEMRKKNIFVSDPSIFTDRCPCLIKVVI 120
Query: 112 RKALNAFFDVLTQYSI 127
+ A N F + L S+
Sbjct: 121 QDAENVFRNELRNKSL 136
>gi|254437797|ref|ZP_05051291.1| rrf2 family protein (putative transcriptional regulator)
[Octadecabacter antarcticus 307]
gi|198253243|gb|EDY77557.1| rrf2 family protein (putative transcriptional regulator)
[Octadecabacter antarcticus 307]
Length = 157
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + + +++ +S +L ++ L +AG+VE+VRG
Sbjct: 1 MKLSTKGRYAMVALADIALQPAETLVSLGELSRRQGLSLPYLEQLFVKLRRAGLVESVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAF 118
GG RL + A I +++++ A +E+ +
Sbjct: 61 PGGGYRLAKGASDIRVVEILAAVDETVSAMHQGAGVSGGSSGSRAQSMTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + +V N
Sbjct: 121 YVYLHQTRLTDVVSN 135
>gi|253990072|ref|YP_003041428.1| hypothetical protein PAU_02593 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781522|emb|CAQ84685.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 155
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R I +L A+H+ R IA + + + ++L L AG+ + G+
Sbjct: 1 MPTSTRFAVAIHILTDIALHHGQAVRSEDIARSVNTNPTVVRRLLGALADAGLTYSQMGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RP +QI++LD+ +A E+ + + C + + L + +
Sbjct: 61 GGGALLARPPEQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNITPVLENEFLRITCVL 120
Query: 119 FDVLTQYSIECLVRN 133
L + +I +
Sbjct: 121 ETALAETTIADMANR 135
>gi|134101075|ref|YP_001106736.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291004105|ref|ZP_06562078.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133913698|emb|CAM03811.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
erythraea NRRL 2338]
Length = 171
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ ++G+ A D +AE + E +L K L L +AG++ G
Sbjct: 1 MKLSQGVEWGLHCTALIAQAPEDTALSRRSLAEHHGLPEAYLAKHLNALTRAGLLTATPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL RPA++IT+LDV+ A E C CG+ +V+ +
Sbjct: 61 PRGGFRLARPAERITVLDVLDAVEGDAAPFVCQEIRQRGTGAVPPEKCTSPCGIAAVMAQ 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A A+ D L + +I LV
Sbjct: 121 AHEAWRDTLRRTTIADLV 138
>gi|325168404|ref|YP_004280194.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Agrobacterium sp. H13-3]
gi|325168902|ref|YP_004280692.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Agrobacterium sp. H13-3]
gi|325064127|gb|ADY67816.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
H13-3]
gi|325064625|gb|ADY68314.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
H13-3]
Length = 162
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 38/151 (25%), Positives = 65/151 (43%), Gaps = 10/151 (6%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + + +AE + + +L K LQ L +AG+V T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPDGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL R ++T LDVV+A E S C C G C + ++ +
Sbjct: 61 PSGGYRLARAPAKLTFLDVVEAVEGSGRTFVCQNIRANNPCRPKGYCESGPCAIARIMWE 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFNAG 144
A A+ VL + + L ++++ + G
Sbjct: 121 ADEAWRTVLRKVTFADL---GKTLEQEIDPG 148
>gi|86131704|ref|ZP_01050301.1| transcriptional regulator [Dokdonia donghaensis MED134]
gi|85817526|gb|EAQ38700.1| transcriptional regulator [Dokdonia donghaensis MED134]
Length = 135
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+++T YG++ L + A + I +IA++ IS+ FL IL + KAG + + +G+
Sbjct: 2 LSRKTKYGLKALTFLAKKPENTTVLIQEIADSENISKKFLESILLSMRKAGYLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + I I V++ E + C + H DCP C L ++ + +
Sbjct: 62 GGYYLIKSPEDIKISSVIRTLEGPIALLPCVSLNFYEHCDDCPKEEECSLHILMIEVRDQ 121
Query: 118 FFDVLTQYSIECLV 131
VL S+ L+
Sbjct: 122 TLKVLENKSLIDLI 135
>gi|226356686|ref|YP_002786426.1| Rrf2 family transcriptional regulator [Deinococcus deserti VCD115]
gi|226318676|gb|ACO46672.1| putative transcriptional regulator, Rrf2 family [Deinococcus
deserti VCD115]
Length = 155
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 60/139 (43%), Gaps = 3/139 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ Y + L + + +I++A + +L +IL L G+V++ +G
Sbjct: 1 MRLSATDVYAFQALGFLGTQAEGHWISSEEISDATGVHRPYLVRILAALTAKGVVKSKKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLT-SVLRKALNA 117
GG L R I++ +VV+A + C + + C C S+ R+ +A
Sbjct: 61 IGGGYALARKPQLISLCEVVRAIDGPVAPLSCISLNWHEPCVEEDRCHARASIYRRMRDA 120
Query: 118 FFDVLTQYSIECLVRNRSS 136
VL ++S+ LV +
Sbjct: 121 MLGVLQEFSVADLVVDARQ 139
>gi|149278443|ref|ZP_01884580.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp.
BAL39]
gi|149230813|gb|EDM36195.1| transcriptional regulator, BadM/Rrf2 family protein [Pedobacter sp.
BAL39]
Length = 156
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 3/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T + +YG+R+L+ A I+ I+E+ +S ++ K+ + L AG + + G
Sbjct: 1 MKITAQEEYGLRILLRIARQGKEGLSIAAISESEGLSTAYVAKLTRLLRMAGYINSTPGN 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALNA 117
+GG L PA +I I V+K + F + C C + S+ +
Sbjct: 61 KGGYSLAMPAAEININKVLKVLGGALFSQRFCEEYPGAVKLCTNSIDCSVRSLWQMIQLT 120
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
+L Q S++ L+ + +
Sbjct: 121 VDQLLDQVSLKDLLSPEQQSNFLLES 146
>gi|307718973|ref|YP_003874505.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
thermophila DSM 6192]
gi|306532698|gb|ADN02232.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
thermophila DSM 6192]
Length = 138
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG++ L++ A+ H P + +IAE ISE FL + L AG+V + +G
Sbjct: 1 MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L RP +IT+ ++V A E F A D P +
Sbjct: 61 KGGGYTLRRPPHRITLREIVTAFEPYVIFPLSHEADEGPDAP---------IWADLEKHI 111
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
+ + S+E LV + I +
Sbjct: 112 QVWMEERSLEELVGLVKRRRGILD 135
>gi|330467835|ref|YP_004405578.1| BadM/Rrf2 family transcriptional regulator [Verrucosispora maris
AB-18-032]
gi|328810806|gb|AEB44978.1| transcriptional regulator, badm/rrf2 family protein [Verrucosispora
maris AB-18-032]
Length = 151
Score = 91.5 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 35/131 (26%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+++ R+DY +R ++ A + + + +A + I FL IL L +AG++ + RG
Sbjct: 1 MYVSARSDYAVRAMLAMAQQHPALVKAAALAASQDIPYSFLQGILLDLRRAGLLHSARGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L R ++IT+ DV++AT + V GL V + A
Sbjct: 61 DGGYALTRAPEEITVGDVLRATGGPLTTVRGAPAEVATYHGVAV-GLGEVWQSVHRAIER 119
Query: 121 VLTQYSIECLV 131
V+ + S+ L+
Sbjct: 120 VVDRSSLADLL 130
>gi|238926961|ref|ZP_04658721.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
gi|238885195|gb|EEQ48833.1| transcriptional regulator [Selenomonas flueggei ATCC 43531]
Length = 147
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YGI +++ A P I I+E IS+++L ++ L ++ +V +++
Sbjct: 1 MKISAKGRYGIASMVFLARSYGTSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG +L RP IT +++ A + E S + +
Sbjct: 61 GSQGGYQLARPPHAITAYEILSAI--EIALIERTGSASEKMEKLNFILSRDLFDVLDQNI 118
Query: 119 FDVLTQYSIECLV 131
+ L ++E L+
Sbjct: 119 HNTLNAVTLEDLL 131
>gi|225027880|ref|ZP_03717072.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353]
gi|224954827|gb|EEG36036.1| hypothetical protein EUBHAL_02140 [Eubacterium hallii DSM 3353]
Length = 145
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 63/145 (43%), Gaps = 4/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L++ A+ +D ++IAE+ + ++ +++ L AGIV +G
Sbjct: 1 MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + AD+I + D+ +A E + DC + + + + N
Sbjct: 61 ANAA-LAKSADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119
Query: 119 FDVLTQYSIECLVRNRS-SIKKIFN 142
+ + +++ ++ I++I N
Sbjct: 120 NEKMKSITLQDIIDRYYFKIREIKN 144
>gi|296272138|ref|YP_003654769.1| BadM/Rrf2 family transcriptional regulator [Arcobacter nitrofigilis
DSM 7299]
gi|296096313|gb|ADG92263.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter
nitrofigilis DSM 7299]
Length = 133
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+++Y + L+ A +D + +++ I + FL KI+Q L K IV + RG
Sbjct: 1 MLLTKKSEYALLSLISIA-KSDKAKNVDELSRELRIPKSFLAKIMQNLAKNEIVISQRGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGS--CGLTSVLRKALNA 117
GG L +P DQ+TI + A EE V EC S CP C + +L
Sbjct: 60 NGGFILAKPYDQLTIFSITAAAEEKIPSVFECAPSMD-SCPSESGSLCSIWPLLNNLQGK 118
Query: 118 FFDVLTQYSIECLVR 132
+ L + +++ + +
Sbjct: 119 INEFLEELTLKDIAQ 133
>gi|288549656|ref|ZP_05967727.2| transcriptional regulator, BadM/Rrf2 family [Enterobacter
cancerogenus ATCC 35316]
gi|288317777|gb|EFC56715.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter
cancerogenus ATCC 35316]
Length = 174
Score = 91.5 bits (226), Expect = 4e-17, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI LM A + + ++A + +L KI L +AG+V + G+
Sbjct: 11 SSGVEYGIHSLMCMVDAKGCEREMSVREMAALQGVPYDYLGKIFTRLSRAGLVSSTEGKG 70
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L RPA+ I++LDV A + + EC F G CG+ SV+
Sbjct: 71 GGFKLARPAELISVLDVAHAIDGEKNMFECREVRQRLAVFDETPPAWVCDGPCGVRSVMD 130
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L++++I L R
Sbjct: 131 SAQQRMEEELSRHTILDLARK 151
>gi|291297814|ref|YP_003509092.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
nassauensis DSM 44728]
gi|290567034|gb|ADD39999.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
nassauensis DSM 44728]
Length = 158
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T ++ + + + D P +++AE +L K LQ L +AGIV + G+
Sbjct: 1 MKMTSGVEWALHACVTLSQAAD-PVPAARLAELHGTPPAYLAKQLQSLARAGIVTSTAGQ 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L RPA ++T+L+VV+A + + C A C SC + +
Sbjct: 60 VGGYTLTRPATEVTVLEVVQAVDGTEPAYRCTEIRQRGPLAVPAEKCER--SCAIARAMA 117
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A A+ L++ +I L R
Sbjct: 118 EAQEAWSRALSRITIADLAR 137
>gi|154250436|ref|YP_001411261.1| BadM/Rrf2 family transcriptional regulator [Fervidobacterium
nodosum Rt17-B1]
gi|154154372|gb|ABS61604.1| transcriptional regulator, BadM/Rrf2 family [Fervidobacterium
nodosum Rt17-B1]
Length = 141
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE--ACCISELFLFKILQPLVKAGIVETVR 58
M +T +++Y I++++ A+ N +I + + F KIL L + GI+ R
Sbjct: 1 MAITMKSEYAIKIMILIAVENKR-VNAREIVKKCRERLPLEFAEKILADLARNGILHAYR 59
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG L + D+IT+ DVV + + +CF SC + + L
Sbjct: 60 GRGGGYELAKKLDEITVYDVVSSVDNPSDTIKCFVDINDKATSPESCTVNKIWESVLEKM 119
Query: 119 FDVLTQYSIECLVRNR 134
++L +++ L +
Sbjct: 120 QEILKSITLKELTEDY 135
>gi|148270395|ref|YP_001244855.1| BadM/Rrf2 family transcriptional regulator [Thermotoga petrophila
RKU-1]
gi|170288979|ref|YP_001739217.1| BadM/Rrf2 family transcriptional regulator [Thermotoga sp. RQ2]
gi|281412702|ref|YP_003346781.1| BadM/Rrf2 family transcriptional regulator [Thermotoga naphthophila
RKU-10]
gi|147735939|gb|ABQ47279.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga petrophila
RKU-1]
gi|170176482|gb|ACB09534.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga sp. RQ2]
gi|281373805|gb|ADA67367.1| transcriptional regulator, BadM/Rrf2 family [Thermotoga
naphthophila RKU-10]
Length = 140
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K Y +R+L+ ++ + P S++AE I+ F K+L L ++G+V +++G+ GG
Sbjct: 7 KHVRYALRLLVRLSLE-NRPMSSSELAEKELITRNFTLKVLHYLKRSGLVNSIKGKNGGF 65
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
L + D+I+ LDV+ E+ + +C + C +C + + D+ +
Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDCNSR----CKNYRACRVKYFWNWLSDYLKDLFSN 121
Query: 125 YSIECLV 131
+I+ +
Sbjct: 122 ITIKDIA 128
>gi|291522993|emb|CBK81286.1| transcriptional regulator, BadM/Rrf2 family [Coprococcus catus
GD/7]
Length = 145
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L++ A+ +D ++IAE+ + ++ +++ L AGIV +G
Sbjct: 1 MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + AD+I + D+ +A E + +C + + + + N
Sbjct: 61 ANAA-LAKSADKINMYDIYRAVEGDKPLLHLDTDTNPNCGIGINIQFAIGDFYHEIQNMI 119
Query: 119 FDVLTQYSIECLVRNR 134
+ + +++ ++
Sbjct: 120 DEKMKSITLQDIIDRY 135
>gi|15644275|ref|NP_229327.1| hypothetical protein TM1527 [Thermotoga maritima MSB8]
gi|4982094|gb|AAD36594.1|AE001800_4 conserved hypothetical protein [Thermotoga maritima MSB8]
Length = 140
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 5/127 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K Y +R+L+ ++ + P S++AE I+ F K+L L ++G+V +++G+ GG
Sbjct: 7 KHVRYALRLLVRLSLE-NRPMSSSELAEKELITRNFALKVLHYLKRSGLVNSIKGKNGGF 65
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
L + D+I+ LDV+ E+ + +C + C +C + + D+ +
Sbjct: 66 VLAKSPDEISFLDVISVFEKDLVIVDCNSR----CKNYRACRVKYFWNWLSDYLKDLFSN 121
Query: 125 YSIECLV 131
+I+ +
Sbjct: 122 ITIKDIA 128
>gi|281418212|ref|ZP_06249232.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|281409614|gb|EFB39872.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum JW20]
gi|316941312|gb|ADU75346.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 1313]
Length = 148
Score = 91.1 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + ++ A +N + I+E IS++FL ++ L KA IV + +
Sbjct: 1 MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNA 117
G +GG +L R QIT+LDV+ + + E D L SV
Sbjct: 61 GAQGGYQLTRTPSQITVLDVLLSV--EVSLFEQTQETVSDKAPDIEQALRSSVFDVLDKN 118
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
L+ +I LV K
Sbjct: 119 IKQTLSTITIADLVAEAEKHKD 140
>gi|271966528|ref|YP_003340724.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
gi|270509703|gb|ACZ87981.1| transcriptional regulator protein-like protein [Streptosporangium
roseum DSM 43021]
Length = 154
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 59/132 (44%), Gaps = 8/132 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ RT Y +R ++ A D P +IA I F IL L +AG++ + RG
Sbjct: 2 MRISARTQYALRAMVALAA-ADNPIHAERIAATQDIPRRFCDNILLQLRRAGLIHSQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L PA++IT+ DV++ V+E + + L + +
Sbjct: 61 DGGYWLAHPAEKITLADVIR-------VSEGVTEGGAEYFPGVAAPLADIWAEIRQHQHA 113
Query: 121 VLTQYSIECLVR 132
+L++ ++ +V
Sbjct: 114 LLSEITLAQIVA 125
>gi|153815370|ref|ZP_01968038.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756]
gi|317500841|ref|ZP_07959053.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331089263|ref|ZP_08338165.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium
3_1_46FAA]
gi|145847229|gb|EDK24147.1| hypothetical protein RUMTOR_01604 [Ruminococcus torques ATCC 27756]
gi|316897721|gb|EFV19780.1| hypothetical protein HMPREF1026_00996 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330405815|gb|EGG85344.1| hypothetical protein HMPREF1025_01748 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 136
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 51/136 (37%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR ++Y ++I+ I +L K+L L KA + G
Sbjct: 1 MQLNVTTDYAIRTVLYLG-QCKKIASATEISNEMGIPRGYLEKVLSKLKKAEYISADLGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
RGG RL + IT+ DV++ E + + C C C + K
Sbjct: 60 RGGYRLNKTLKDITLGDVIRLMESTTKINRCLEDDAY-CSRKAVDFCAVRRYYAKVQEKL 118
Query: 119 FDVLTQYSIECLVRNR 134
S++ ++
Sbjct: 119 ETQFFSISLKEILEQE 134
>gi|300772784|ref|ZP_07082654.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
gi|300761087|gb|EFK57913.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
Length = 145
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y +R +MY A I +IAEA E FL KILQ L K G++ + +G
Sbjct: 4 FSKTCEYALRAVMYIAQCSQQGEKAGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + + D+V++ + S C C C L +K
Sbjct: 64 NGGFYMDPEDTKRPLADIVRSIDGSQLFEGCAMGLDY-CSKENPCPLHHDFKKIRKKLSV 122
Query: 121 VLTQYSIE----CLVRNRSSIKK 139
+L + SI L++ ++ K
Sbjct: 123 MLQETSIGQFNMDLIQGNFTLSK 145
>gi|194015517|ref|ZP_03054133.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061]
gi|194012921|gb|EDW22487.1| Rrf2 family transcriptional regulator [Bacillus pumilus ATCC 7061]
Length = 142
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ IA + + + + +I+ L KAG++ T G+
Sbjct: 1 MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG +L R D IT+LDV KA E + + + S DCP+ + L +L +A +
Sbjct: 61 -GGSQLNRSEDDITLLDVYKAVEVVDEGELFQIHESPNPDCPIGANIQAVLELILCRAQS 119
Query: 117 AFFDVLTQYSIECLVR 132
A VL + + L +
Sbjct: 120 AMEQVLAEIKLSELTQ 135
>gi|310777893|ref|YP_003966226.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
DSM 2926]
gi|309747216|gb|ADO81878.1| transcriptional regulator, BadM/Rrf2 family [Ilyobacter polytropus
DSM 2926]
Length = 165
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ + +YG+ L+Y H + + +++ ISE +L K+ L K+GIV + G
Sbjct: 2 LQFSIGVEYGLHCLLYLVDHPEGKAISVKELSTFQGISETYLSKVFTKLKKSGIVRSTPG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF----------ASHKIDCPLVGSCGLTS 109
+GG L R + I+ DV++A E + + +C C + +
Sbjct: 62 VKGGYELARDSKDISFWDVIEAIEGNSNLFQCAGILKSTVINTEEEVEKYSGDCPCIIKN 121
Query: 110 VLRKALNAFFDVLTQYSI 127
V+ A L + S+
Sbjct: 122 VMLDAEEQMRIYLREKSL 139
>gi|227538160|ref|ZP_03968209.1| possible transcription regulator [Sphingobacterium spiritivorum
ATCC 33300]
gi|227242003|gb|EEI92018.1| possible transcription regulator [Sphingobacterium spiritivorum
ATCC 33300]
Length = 149
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 7/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y +R +MY A I +IAEA E FL KILQ L K G++ + +G
Sbjct: 8 FSKTCEYALRAVMYIAQCSQQGEKVGIREIAEAIKSPEAFLGKILQQLSKEGLIRSAKGP 67
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + + D+V + + C C C L +K F
Sbjct: 68 NGGFYMTPEDTKRPLADIVSSIDGVQLFEGCAMGLDY-CSKENPCPLHHDFKKIRKKLFV 126
Query: 121 VLTQYSIE----CLVRNRSSIKK 139
+L + SI L++ ++ K
Sbjct: 127 MLQETSIGQFNMDLIKGNFTLSK 149
>gi|315186460|gb|EFU20220.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
thermophila DSM 6578]
Length = 138
Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 62/144 (43%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG++ L++ A+ H P + +IAE ISE FL + L AG+V + +G
Sbjct: 1 MKVPAKVRYGLQALVHLALSHGAGPVSVKEIAEQYGISEKFLEGVFSHLRAAGLVLSTKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L RP +IT+ +VV A E F A D P +
Sbjct: 61 KGGGYTLRRPPHRITLREVVTAFEPYVIFPLSHEADEGPDAP---------IWADLEKHI 111
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
+ S+E LV + I +
Sbjct: 112 QVWMEGRSLEELVGLVKRRRGILD 135
>gi|288917460|ref|ZP_06411826.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
gi|288351163|gb|EFC85374.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
Length = 136
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+++ R +Y IR ++ A+ + +A + IS +L IL L +AG++ RG
Sbjct: 1 MYISARAEYAIRAMLALAVAHPDRVAAPALAASEEISLAYLQAILLDLRRAGLLFNRRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RP D IT+ D+++AT + + + + GL+ V A +
Sbjct: 61 DGGYSLARPTDSITVGDILRATGGALTSVRGEPAERATY-GGAARGLSRVWLAVDAAIHE 119
Query: 121 VLTQYSIECLVRNRSSI 137
VL + ++ ++ ++ S+
Sbjct: 120 VLDRATLADVLADKVSV 136
>gi|226363891|ref|YP_002781673.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
gi|226242380|dbj|BAH52728.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
Length = 154
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 13/151 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ ++ + + + + P +++A+ +S+ +L K LQ L +AG+V GR
Sbjct: 3 MKISGGVEWSLHCCVVLS-QAEGPVPTARLADLHGVSKSYLAKHLQSLARAGLVHPTEGR 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R IT+LDVV+A + + C A+ C CG+ V+
Sbjct: 62 DGGYVLTRAPADITVLDVVQAVDGAGPAFRCTEIRQQGLLAAPPEQC--KTPCGIAKVMA 119
Query: 113 KALNAFFDVLTQYSIECLVR--NRSSIKKIF 141
+A A+ L+ +I L + +++++
Sbjct: 120 EAERAWRASLSGVTIADLAATLDLTALRRTL 150
>gi|304436329|ref|ZP_07396306.1| iron-sulfur cluster assembly transcription regulator IscR
[Selenomonas sp. oral taxon 149 str. 67H29BP]
gi|304370684|gb|EFM24332.1| iron-sulfur cluster assembly transcription regulator IscR
[Selenomonas sp. oral taxon 149 str. 67H29BP]
Length = 175
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YGI +++ A D P I I+E IS+++L ++ L ++ +V +++
Sbjct: 29 MKISAKGRYGIASMVFLARSYDTSSPVTIISISEHLGISKIYLEQVFALLKRSKLVNSIK 88
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG +L RP IT D++ A + E S + +
Sbjct: 89 GSQGGYQLARPPHDITAYDILSAI--EIALIEKTGSSCEKMEKLDLVLARDLFGVLDQNI 146
Query: 119 FDVLTQYSIECLV 131
D L ++E L+
Sbjct: 147 HDTLNAVTLEDLL 159
>gi|291531113|emb|CBK96698.1| rrf2 family protein (putative transcriptional regulator)
[Eubacterium siraeum 70/3]
Length = 135
Score = 90.7 bits (224), Expect = 5e-17, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T TDY IR++ + A ++ I+E + + F KIL+ L AGIV + +G
Sbjct: 1 MHITLETDYAIRIVDFMAKNDGR-FDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
+GG L R ++++ DVV+A E+++ + C H +C + C + +
Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEDTYMFSRCLDGH-YNCNRAENGLPCNYRIAFARISDI 118
Query: 118 FFDVLTQYSIEC 129
D L + + +
Sbjct: 119 VCDELKKLTFDD 130
>gi|315150793|gb|EFT94809.1| Rrf2 family protein [Enterococcus faecalis TX0012]
Length = 158
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + I +L IA + + + + +++ L KAG++ ++RG
Sbjct: 1 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + ++I++ ++ A E + + +C + + L + K
Sbjct: 61 -NKNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKM 119
Query: 119 FDVLTQYSIECLVRN 133
+ L ++ ++
Sbjct: 120 EEELKSITLADVIHE 134
>gi|157693884|ref|YP_001488346.1| transcriptional regulator [Bacillus pumilus SAFR-032]
gi|157682642|gb|ABV63786.1| Rrf2 family transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 142
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ IA + + + + +I+ L KAG++ T G+
Sbjct: 1 MKISSRFTVAVHILALLSLEKGSLQTSEDIAGSVNTNPVVIRRIMSKLKKAGLISTSLGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG +L R D+IT+LDV KA E + + + S DCP+ + L +L +A +
Sbjct: 61 -GGSQLNRSEDEITLLDVYKAVEVVDEGELFQIHESPNPDCPIGANIQAVLELILCRAQS 119
Query: 117 AFFDVLTQYSIECLVR 132
A VL + + L +
Sbjct: 120 AMEQVLAEIKLSELTQ 135
>gi|119961490|ref|YP_946631.1| transcriptional regulator [Arthrobacter aurescens TC1]
gi|119948349|gb|ABM07260.1| putative transcriptional regulator [Arthrobacter aurescens TC1]
Length = 156
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 2/138 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + D +R +M A + +A+A + K + L G ++ RG
Sbjct: 1 MKINAFADVSLRAIMVLAAAPEGTLLTTQAVADAVGTPYNHVSKAMVRLRALGFIDVERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL + T+ ++++ + AEC + K CPL+ CGL + KA AF+
Sbjct: 61 RLGGSRLNEAGRKATVGELLRHLDSRQDPAECQSPTKA-CPLINECGLRHAMNKAREAFY 119
Query: 120 DVLTQYSIECLVRNRSSI 137
L I L R I
Sbjct: 120 RELDTVVISSLPHARQMI 137
>gi|262201958|ref|YP_003273166.1| hypothetical protein Gbro_2020 [Gordonia bronchialis DSM 43247]
gi|262085305|gb|ACY21273.1| protein of unknown function UPF0074 [Gordonia bronchialis DSM
43247]
Length = 177
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAI---------HNDYPNRISQIAEACCISELFLFKILQPLVKA 51
M LT+ TD G+RV+M +A + + K++ L +
Sbjct: 13 MQLTRFTDIGLRVVMRLVAAEAAARETASGPPTLTTKDLAAELAVPYTHVAKVVSRLSEL 72
Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
G+V + RGR GG+ + + + + E V +C + CPL +C L L
Sbjct: 73 GVVHSRRGRSGGLMITDLGRAARVGWLAETLEGPGEVVDCNSPE--PCPLRAACHLRGAL 130
Query: 112 RKALNAFFDVLTQYSIECLVRNRS 135
+A NAFF L +++I LV +
Sbjct: 131 AQARNAFFRSLDEHAIVDLVAQPT 154
>gi|85703168|ref|ZP_01034272.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius sp. 217]
gi|85672096|gb|EAQ26953.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius sp. 217]
Length = 153
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L+ A+ + ++ IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALVDIALQPAGAVVTLGDVSRRQDISLPYLEQLFVKLRRAELVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-TSVLRKALNAF 118
GG RL RPA +I + D++ A +E+ A + + +
Sbjct: 61 PGGGYRLMRPASEIRVSDILAAVDETIDALHKGAGASGGASGSRAQSMANRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + + N
Sbjct: 121 YVFLHQTRLSDVAGN 135
>gi|308371930|ref|ZP_07426693.2| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis
SUMu004]
gi|308373100|ref|ZP_07431000.2| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis
SUMu005]
gi|308374277|ref|ZP_07435406.2| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis
SUMu006]
gi|308376685|ref|ZP_07439652.2| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis
SUMu008]
gi|308378898|ref|ZP_07484226.2| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis
SUMu010]
gi|308335059|gb|EFP23910.1| hypothetical protein TMDG_01165 [Mycobacterium tuberculosis
SUMu004]
gi|308338867|gb|EFP27718.1| hypothetical protein TMEG_01183 [Mycobacterium tuberculosis
SUMu005]
gi|308342552|gb|EFP31403.1| hypothetical protein TMFG_02477 [Mycobacterium tuberculosis
SUMu006]
gi|308350358|gb|EFP39209.1| hypothetical protein TMHG_00471 [Mycobacterium tuberculosis
SUMu008]
gi|308358935|gb|EFP47786.1| hypothetical protein TMJG_03929 [Mycobacterium tuberculosis
SUMu010]
Length = 159
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 2/130 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + +Y +R ++ A + + +A A I FL IL L +V + RGR
Sbjct: 1 MSAKAEYAVRAMVQLATAASGTVVKTDDLAAAQGIPPQFLVDILTNLRTDRLVRSHRGRE 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RP +I+I DV++ + + + LT V R + V
Sbjct: 61 GGYELARPGTEISIADVLRCIDGPLASVRDIGLGDLPYS-GPTTALTDVWRALRASMRSV 119
Query: 122 LTQYSIECLV 131
L + ++ +
Sbjct: 120 LEETTLADVA 129
>gi|255035951|ref|YP_003086572.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
DSM 18053]
gi|254948707|gb|ACT93407.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
DSM 18053]
Length = 145
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y IR + Y A ++ I +IA E FL KILQ L K G+V + +G
Sbjct: 4 FSKTCEYAIRAVFYIAQKSEEGQKVGIREIALHINSPEPFLAKILQKLSKDGLVLSSKGP 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L Q ++ D+V+A E C C C L + +K N
Sbjct: 64 HGGFYLDPGGLQRSLADIVQAIEGDSIFNGCGMGLSY-CSQANPCPLHNDFKKIRNQIVI 122
Query: 121 VLTQYSI----ECLVRNRSSIKK 139
+L SI E L++ + ++ K
Sbjct: 123 MLRNTSIGKFNEGLIQGQLTLNK 145
>gi|297562143|ref|YP_003681117.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296846591|gb|ADH68611.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 143
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT TD +R++M A+ ++ +A + + K + L G+VE RG
Sbjct: 1 MRLTAFTDVSLRLVMRLAVADEGELLTTRAVAGMLSVPYTHMAKAVARLSDMGLVEARRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L + ++ +V+ E + +A C CPL +C L LR+A AF+
Sbjct: 61 RNGGLLLTESGRRASVGSIVRELEGAGELAGC--EDDPPCPLRAACRLRGALREAHEAFY 118
Query: 120 DVLTQYSIECLV 131
L ++E LV
Sbjct: 119 TSLDGVTVESLV 130
>gi|317502405|ref|ZP_07960570.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium
8_1_57FAA]
gi|331087998|ref|ZP_08336921.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316896215|gb|EFV18321.1| hypothetical protein HMPREF1026_02515 [Lachnospiraceae bacterium
8_1_57FAA]
gi|330409309|gb|EGG88758.1| hypothetical protein HMPREF1025_00504 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 131
Score = 90.7 bits (224), Expect = 6e-17, Method: Composition-based stats.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK +DY IRV+ A+ + I ++ E I F +KILQ + K+G++E RG
Sbjct: 1 MLFTKESDYAIRVIR--ALQDGGKKTIKELCELEQIPSAFGYKILQKMNKSGLIEIRRGP 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG +L + + T+ DVV A E F V EC I C + L ++
Sbjct: 59 KGGYQLAKDIGEFTLYDVVTAIEPDFAVMECVHHSCIRNESKEGCAVHRELLGIQHSVEK 118
Query: 121 VLTQYSIECLVRN 133
+L + ++ +++
Sbjct: 119 LLKKKTMADILKK 131
>gi|37525899|ref|NP_929243.1| hypothetical protein plu1977 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36785328|emb|CAE14270.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 154
Score = 90.7 bits (224), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R I +L A+H+ R IA++ + + ++L L +AG+ + G+
Sbjct: 1 MPTSTRFAVAIHILTDIALHHGQAVRSEDIAKSVNTNPTVVRRLLGALAEAGLTYSQMGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RP++QI++LD+ +A E+ + + C + + L +
Sbjct: 61 GGGALLARPSNQISLLDIYRAVEDPLYFTLHRSKPNPKCYIGHNITPVLEDEFSRVTCVL 120
Query: 119 FDVLTQYSIECLVRN 133
L + ++ +V
Sbjct: 121 ETALAETTVADIVNR 135
>gi|253580214|ref|ZP_04857481.1| transcriptional regulator [Ruminococcus sp. 5_1_39B_FAA]
gi|251848733|gb|EES76696.1| transcriptional regulator [Ruminococcus sp. 5_1_39BFAA]
Length = 145
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 63/143 (44%), Gaps = 4/143 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L++ A+ ++ ++IAE+ + ++ +++ L AGIV +G
Sbjct: 1 MKYSTKLSDTIHILIFIALGDEEQLSSTKIAESIKTNPAYVRQLMATLKNAGIVVNTQGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PAD+I + D+ +A E + DC + + + + N
Sbjct: 61 ANAA-LAKPADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119
Query: 119 FDVLTQYSIECLVRNRS-SIKKI 140
+ + +++ ++ I+K+
Sbjct: 120 DEKMKSITLQDIIDRYYFKIRKV 142
>gi|260588850|ref|ZP_05854763.1| sensory box protein [Blautia hansenii DSM 20583]
gi|260540629|gb|EEX21198.1| sensory box protein [Blautia hansenii DSM 20583]
Length = 488
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IR++ + A + + P + IA + I ++ KI++ L A IV +V G
Sbjct: 1 MQLTSTTDYSIRLVCFLA-YKEEPCSTATIATSANIPNNYIPKIIKKLKIANIVGSVEGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-------CPLVGSCGLTSVLRK 113
+GG L + + IT+ D++ E + + +C + C +C + +V +
Sbjct: 60 QGGYFLLKKPETITLWDILDTMESTMKINKCLEEKQEGECCVPNYCHNRETCKVRAVFEQ 119
Query: 114 ALNAFFDVLTQYSIECLV 131
L + +I L+
Sbjct: 120 FQMDLERKLEEVTIAELI 137
>gi|126737794|ref|ZP_01753524.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseobacter sp. SK209-2-6]
gi|126721187|gb|EBA17891.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseobacter sp. SK209-2-6]
Length = 153
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 32/135 (23%), Positives = 61/135 (45%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ + + I++ IS +L ++ L +A +V +VRG
Sbjct: 1 MKLSTKGRYAMVALSDIALQPEGTLVVLGDISKRQDISLPYLEQLFVKLRRAELVTSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL RPA +I ++D++ A +E+ A + LT+ + +
Sbjct: 61 PGGGYRLARPASEIRVVDILSAVDETVDAMHKGAGASGGASGSRAQSLTNRLWQSLSAHV 120
Query: 119 FDVLTQYSIECLVRN 133
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVINN 135
>gi|125974067|ref|YP_001037977.1| BadM/Rrf2 family transcriptional regulator [Clostridium
thermocellum ATCC 27405]
gi|125714292|gb|ABN52784.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum ATCC 27405]
Length = 151
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + ++ A +N + I+E IS++FL ++ L KA IV + +
Sbjct: 4 MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 63
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT-SVLRKALNA 117
G +GG +L R QIT+LDV+ + + E D L SV
Sbjct: 64 GVQGGYQLTRTPSQITVLDVLLSV--EVSLFEQTQETVSDKAPDIEQALRSSVFDVLDKN 121
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
L+ +I LV K
Sbjct: 122 IKQTLSTITIADLVAEAEKHKD 143
>gi|317050737|ref|YP_004111853.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
S5]
gi|316945821|gb|ADU65297.1| transcriptional regulator, Rrf2 family [Desulfurispirillum indicum
S5]
Length = 147
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 62/136 (45%), Gaps = 2/136 (1%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K TDY +R+ +Y A + ++S+I + +++ + K++Q L + G+V + G+ GG+
Sbjct: 7 KETDYALRIAVYLA-NKQERVKVSEICQKLNLTKPVVIKVIQMLKRHGLVASKTGKYGGL 65
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
L P ++I++ DV+ + + C C L C ++ F L
Sbjct: 66 SLAHPPEEISVYDVLVSMSADHSINTCLEDASF-CQLQPICRISRFFCDIQRDFNARLKS 124
Query: 125 YSIECLVRNRSSIKKI 140
+ L + ++ +
Sbjct: 125 VKLAGLTFDDEQLEAL 140
>gi|256026414|ref|ZP_05440248.1| hypothetical protein PrD11_00165 [Fusobacterium sp. D11]
gi|260494511|ref|ZP_05814641.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33]
gi|289764429|ref|ZP_06523807.1| conserved hypothetical protein [Fusobacterium sp. D11]
gi|260197673|gb|EEW95190.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_33]
gi|289715984|gb|EFD79996.1| conserved hypothetical protein [Fusobacterium sp. D11]
Length = 140
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I C + L+K +
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDELL 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D + + LV N + ++
Sbjct: 121 DDFDKINFYDLVENNTGLE 139
>gi|325122368|gb|ADY81891.1| hypothetical protein BDGL_001305 [Acinetobacter calcoaceticus
PHEA-2]
Length = 164
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 38/123 (30%), Positives = 56/123 (45%), Gaps = 9/123 (7%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ D P +AE +S F+ KI L KAG+V G RGG L RPA +I+ LD+V
Sbjct: 3 NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVIAQEGVRGGYLLARPAHEISFLDIV 62
Query: 80 KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
A E + EC F + D G C + +V+ +A A D L +++ +
Sbjct: 63 NAIEGEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDI 122
Query: 131 VRN 133
Sbjct: 123 ADR 125
>gi|268679988|ref|YP_003304419.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum
DSM 6946]
gi|268618019|gb|ACZ12384.1| transcriptional regulator, Rrf2 family [Sulfurospirillum deleyianum
DSM 6946]
Length = 135
Score = 90.4 bits (223), Expect = 7e-17, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK ++Y + L+ A + P + ++ +S+ FL KILQ L K I+ + +G
Sbjct: 1 MLLTKASEYALLSLIIIA-QKNTPQDVDTLSTQLGLSKSFLAKILQSLAKEEILSSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
GG L + ++IT+ VV+ E+ V + CP +C + VL K +
Sbjct: 60 HGGFMLAKKPEEITLKMVVECAEKKQTVVFECSPSTQKCPGGKGDNCRVWPVLNKLQSKI 119
Query: 119 FDVLTQYSIECLVRNR 134
L ++ ++
Sbjct: 120 DLFLDTMTLHDIINEN 135
>gi|241890090|ref|ZP_04777388.1| transcriptional regulator [Gemella haemolysans ATCC 10379]
gi|241863712|gb|EER68096.1| transcriptional regulator [Gemella haemolysans ATCC 10379]
Length = 138
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 57/131 (43%), Gaps = 4/131 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L+Y + D +A++ + + KIL L K ++E+ +G+ G+
Sbjct: 3 TKFSVALHILIYIS-ETDKVVSSEILAKSVNTNSSHIRKILVVLKKGELIESQQGK-TGI 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
L + IT+ ++ + ++ +CP+ + L V +A AF+ L
Sbjct: 61 TLAKEPKDITLSEIYQIIYPDKYLVNIHEGANKECPVGLNIENLLQPVFNEAQEAFYKKL 120
Query: 123 TQYSIECLVRN 133
++E L++
Sbjct: 121 EGKTLEKLIKE 131
>gi|220928362|ref|YP_002505271.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Clostridium cellulolyticum H10]
gi|219998690|gb|ACL75291.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulolyticum H10]
Length = 148
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 62/134 (46%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YGI ++ A N + I+E IS+++L ++ L ++ +V +V+
Sbjct: 1 MRISSKGRYGIAAMICVAQLGRNGDFVTVISISEKLGISKIYLEQVFSLLKRSKLVNSVK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNA 117
G +GG L + +++IT D+++A + E ++S V K +
Sbjct: 61 GSQGGYHLAKSSERITAYDILQAV--ELSLFEKTERSVSAQAEGIEKSISSLVWDKLDES 118
Query: 118 FFDVLTQYSIECLV 131
+VL ++ LV
Sbjct: 119 ICEVLKNTTLRDLV 132
>gi|313633680|gb|EFS00431.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
Length = 143
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +I+ L KAG++ + G
Sbjct: 3 MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G L + A +IT+ D+ A + + + + + +C + + L +V A
Sbjct: 63 -SGTYLLKEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQVTLDTVFNHAQQQM 121
Query: 119 FDVLTQYSIECLVRN 133
L Q ++ + N
Sbjct: 122 EADLKQTNLSQITAN 136
>gi|121535527|ref|ZP_01667335.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
carboxydivorans Nor1]
gi|121305855|gb|EAX46789.1| transcriptional regulator, BadM/Rrf2 family [Thermosinus
carboxydivorans Nor1]
Length = 146
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A + + +AE I + FL KI++ L +AG++++ RG
Sbjct: 1 MQLNQATDYAFRIVLHLACLPSGQVVNGQTLAEQENIPQRFLLKIMRSLTQAGLIKSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-GSCGLTSVLRKALNAF 118
GG L R ++ITI D++ A E + C A C + +VL +
Sbjct: 61 TDGGFALARRPEEITIWDIICAIEGEVTIHRCLADRTACSKHCTHECPVHAVLGQIQAEL 120
Query: 119 FDVLTQYSIECLVRNRS 135
L Q L R
Sbjct: 121 VAALRQADFATLASQRR 137
>gi|332653243|ref|ZP_08418988.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
gi|332518389|gb|EGJ47992.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
Length = 147
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 22/136 (16%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L + ++ ++IAE+ + ++ +++ L AGI+ + +G+
Sbjct: 1 MKYSTKLSDALHILAFLSMGAGQRITSAKIAESVKTNPAYIRQLMAALKSAGIITSSQGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
L R +IT+LDV +A E + + +C + L+ ++ A
Sbjct: 61 ANA-ELTRQPGEITVLDVYRAIEGNKPLLHWDIDTNPECGVGIYVQLSIADFYQEIQRAA 119
Query: 119 FDVLTQYSIECLVRNR 134
+ +++ ++
Sbjct: 120 EQKMQTITLQDIIDRY 135
>gi|300856563|ref|YP_003781547.1| putative transcriptional regulator [Clostridium ljungdahlii DSM
13528]
gi|300436678|gb|ADK16445.1| predicted transcription regulator [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 90.4 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 69/136 (50%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ +DYG RV++Y + + IA+ + FL K+L+ L +AGIV++ RG
Sbjct: 1 MKITQESDYGFRVVLYLSNLGYGKKIEAKTIAKDQNVPLRFLLKLLRKLTQAGIVKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L R + IT+ ++++A + ++ C + + G CG+ + L K
Sbjct: 61 VNGGYALNRMPEDITLRNIIEAIDGPIYLNRCLYDTEHCNAHKKGHCGVHNALSKVQGTL 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L + + ++ ++
Sbjct: 121 INELESINFKDIMEDK 136
>gi|260574649|ref|ZP_05842652.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
gi|259023066|gb|EEW26359.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacter sp. SW2]
Length = 153
Score = 90.4 bits (223), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A+ +D +++I+ IS +L ++ L +A +VE VRG
Sbjct: 1 MKLSTKGRYAMVALADLALARDDDLVSLAEISRRQDISLAYLEQLFVKLRRASLVEAVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAF 118
GG RL R D I + ++++A EE+ A + LT+ +
Sbjct: 61 PGGGYRLARSPDAIRVSEILEAVEETVSAMHSGAGASGGISGSRAQSLTNRLWEGLSAHV 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + ++ N
Sbjct: 121 YVFLHQTRLSDVIGNE 136
>gi|323440820|gb|EGA98529.1| Rrf2 family protein [Staphylococcus aureus O11]
Length = 117
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 31/125 (24%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L PA++I+ D+++ E E S + + +A
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP--------AQKQLWIRMRDAVR 112
Query: 120 DVLTQ 124
DVL
Sbjct: 113 DVLDN 117
>gi|299143924|ref|ZP_07037004.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
gi|298518409|gb|EFI42148.1| Rrf2 family protein [Peptoniphilus sp. oral taxon 386 str. F0131]
Length = 137
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY R+ Y A + +IA ISE F +IL+ L AGI RG
Sbjct: 1 MRITQETDYAFRICGYLAQNEGQVIGAPKIASEKKISERFTLRILRKLNLAGITTAKRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116
GG L +P ++IT+ D++ A + V +C S C + L +
Sbjct: 61 AGGYLLNKPKEEITLYDIIVAVDGPIIVNKCIDSECGRVSDSPCGFVGCKFHNKLAEVQQ 120
Query: 117 AFFDVLTQYSIECLVRN 133
D+ +++ +
Sbjct: 121 TIVDMFKDATLDKFMER 137
>gi|171911244|ref|ZP_02926714.1| hypothetical protein VspiD_08720 [Verrucomicrobium spinosum DSM
4136]
Length = 137
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++K+ +Y +R ++ + I +AE I FL +IL L K GI+ + RG
Sbjct: 1 MKISKKAEYALRAVLAMSRSATGTIFSIQSLAEEERIPLKFLEQILLILRKGGIMHSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG +L RPA +IT+ ++++ + + S GLTS ++
Sbjct: 61 AGGGYQLVRPASRITVGEILELVDGPIELLPDGNSLSP--------GLTSAFQELQGEMQ 112
Query: 120 DVLTQYSIECLVRNRS 135
LT+ ++ +++
Sbjct: 113 AWLTKMTLADVMQREQ 128
>gi|153812308|ref|ZP_01964976.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174]
gi|149831715|gb|EDM86802.1| hypothetical protein RUMOBE_02707 [Ruminococcus obeum ATCC 29174]
Length = 147
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M K+T YG+ L+ A P + IAE IS FL I + GIV++V+G
Sbjct: 1 MKFCKKTRYGLTALVDLAAQPSTTPVALKTIAERNDISLQFLEHIFASFRRTGIVKSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + AD+IT+ VV+ E S+ + + + + V+
Sbjct: 61 SQGGYNLAKAADEITVASVVEVLEGSYHLEDEDVLAENSYKGISDTIQKLVVDSVNQELD 120
Query: 120 DVLTQYSIECL 130
+L+ ++ +
Sbjct: 121 QILSNLTLAQM 131
>gi|126726563|ref|ZP_01742404.1| transcriptional regulator, BadM/Rrf2 family protein
[Rhodobacterales bacterium HTCC2150]
gi|126704426|gb|EBA03518.1| transcriptional regulator, BadM/Rrf2 family protein
[Rhodobacterales bacterium HTCC2150]
Length = 180
Score = 90.0 bits (222), Expect = 9e-17, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 55/136 (40%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + Y + L A I +S I+ IS +L ++ L +AG+VE+VRG
Sbjct: 28 MKLSTKGRYAMVALADLACITAPRLTSLSDISRRQDISLPYLEQLFVKLRRAGLVESVRG 87
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-TSVLRKALNAF 118
GG RL + +I + D++ A +E+ + + +
Sbjct: 88 PGGGYRLAKAPAEIRVSDILGAVDETVSAMHQGGGASGGSSGSKAQSMANRLWENLSANV 147
Query: 119 FDVLTQYSIECLVRNR 134
+ L Q + ++ N
Sbjct: 148 YVFLHQTRLSDVIENE 163
>gi|257784030|ref|YP_003179247.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
20469]
gi|257472537|gb|ACV50656.1| transcriptional regulator, BadM/Rrf2 family [Atopobium parvulum DSM
20469]
Length = 167
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y ++ + R+ AE ISE +L K L KAGIV + G
Sbjct: 1 MKFSIGIEYALHCLLYMVDLNENKSIRVRDFAEFQGISESYLSKTFTQLSKAGIVLSSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP----------LVGSCGLTS 109
+GG RL + I+ D+V+A E + +C + C ++
Sbjct: 61 IKGGYRLAKSPQSISFWDIVEAIEGKDPLFQCHEIRLSNSTLKEIGVLQKADKSPCLISG 120
Query: 110 VLRKALNAFFDVLTQYSI 127
V+ + L++ ++
Sbjct: 121 VMHQGEKEMKKFLSKKTL 138
>gi|237744648|ref|ZP_04575129.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229431877|gb|EEO42089.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 140
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I C + L+K +
Sbjct: 61 AKGGYILTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDELL 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D + + LV N + ++
Sbjct: 121 DDFDKINFYDLVENNTGLE 139
>gi|298247460|ref|ZP_06971265.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297550119|gb|EFH83985.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 168
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ ++G+ A + +AE +SE +L K LQ L + GI+E+V G
Sbjct: 1 MKLSEGVEWGLHCTSVLASLPTKATLPTKALAEYHGVSETYLSKHLQALTRGGIIESVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113
RGG RL RPA +IT+LDVV+A + C + C + S C + + +
Sbjct: 61 PRGGYRLARPATEITLLDVVEAIDGPEPAFRCTEIRQQGPCAIESSAYHLPCTIHVAMAR 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A + + L +I +V
Sbjct: 121 AEKLWRNELRAQTIADIVAQ 140
>gi|260770286|ref|ZP_05879219.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2
family [Vibrio furnissii CIP 102972]
gi|260615624|gb|EEX40810.1| predicted transcriptional regulator of NADH dehydrogenase Rrf2
family [Vibrio furnissii CIP 102972]
Length = 172
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI L+ + P + + A + +L KI KAG+VE+ GR+
Sbjct: 5 SSGVEYGIHCLVNMVDEDGEPREMSVREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRK 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L + +I++LD+ A + + +C F G CG+ +V+R
Sbjct: 65 GGYKLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVPQWACEGMCGIHAVMR 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
KA N VL + SI L +
Sbjct: 125 KAQNQMQQVLAEQSILMLSKQ 145
>gi|154684993|ref|YP_001420154.1| YwnA1 [Bacillus amyloliquefaciens FZB42]
gi|154350844|gb|ABS72923.1| YwnA1 [Bacillus amyloliquefaciens FZB42]
Length = 147
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 65/146 (44%), Gaps = 5/146 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R GI +L I+ D + +A + + F+ KI+ L KAG+V+ G
Sbjct: 1 MSISSRFAVGIHILALIEINEDGISTSEFLAGSVNTNPAFIRKIVGMLKKAGLVKVRPG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
G L + +IT+LDV +A + + + CP+ + + + A +
Sbjct: 60 IAGAELAKDLTEITLLDVYRAVNVVQDKELFSIHENPNPQCPVGRNIQSTIGPIFEIAQS 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
A L +IE +V++ +K+ N
Sbjct: 120 ALEKALGHITIEDVVKDIIEKEKLTN 145
>gi|313672403|ref|YP_004050514.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939159|gb|ADR18351.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
Length = 136
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T ++ Y I L+Y + + + P S+I+ + I + FL L L GI+++ +G
Sbjct: 1 MQTTAQSIYAIYALVYIS-YRNKPVNPSEISNSSSIPKRFLEITLNKLKHHGILKSKKGP 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +P ++I++ D++ ATE + + +C C L +
Sbjct: 60 NGGFILSKPPEKISLYDILSATESNLSLFDCEKHLPTGCHF------KQFLESINCQHLN 113
Query: 121 VLTQYSIECLVRNRSS 136
+L ++E + + S
Sbjct: 114 LLKSITLEDIRKQESQ 129
>gi|153811085|ref|ZP_01963753.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174]
gi|149832973|gb|EDM88056.1| hypothetical protein RUMOBE_01476 [Ruminococcus obeum ATCC 29174]
Length = 145
Score = 90.0 bits (222), Expect = 1e-16, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 62/145 (42%), Gaps = 4/145 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L++ A+ +D ++IAE+ + ++ +++ L AGI+ +G
Sbjct: 1 MKYSTKLSDTIHILIFIALGDDEQLSSTKIAESIKTNPAYVRQLMATLKNAGIIVNTQGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + AD+I + D+ +A E + DC + + + + N
Sbjct: 61 ANAA-LAKSADKINMYDIYRAVEGDKPLLHLDTDTNPDCGIGINIQFAIGDFYHEIQNMV 119
Query: 119 FDVLTQYSIECLVRNRS-SIKKIFN 142
+ +++ ++ I+K+ N
Sbjct: 120 DKKMKSITLQDIIDRYYFKIRKVKN 144
>gi|210621787|ref|ZP_03292816.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275]
gi|210154551|gb|EEA85557.1| hypothetical protein CLOHIR_00761 [Clostridium hiranonis DSM 13275]
Length = 148
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/135 (30%), Positives = 68/135 (50%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T+ +DY IR++ A+ ++ I I E + E F +KI++ L K+ IVE RG
Sbjct: 1 MLFTRESDYAIRIVR--ALKDEEKLTIKTICERELLPEAFAYKIIKKLAKSEIVEIKRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + +++T+ DV+ A + F V EC S G C + L N
Sbjct: 59 NGGYSLKKDLNELTLYDVIIAVDPDFAVMECIHSFCNRNGSNGMCKVHKELIYIQNQVEM 118
Query: 121 VLTQYSIECLVRNRS 135
+L + S+E ++ +R+
Sbjct: 119 LLKRRSLEEILEDRN 133
>gi|291460624|ref|ZP_06600014.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262]
gi|291416815|gb|EFE90534.1| Rrf2 family protein [Oribacterium sp. oral taxon 078 str. F0262]
Length = 167
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y + L+Y A + + RI ++ ISE +L K L KAGI+ + G
Sbjct: 1 MKFSVAVEYALHGLIYMAGLEENKSIRIQDMSRFQGISESYLSKTYAKLAKAGIISSAAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL----------VGSCGLTS 109
+GG RL +PA+QI+ DV++A E + C + C ++
Sbjct: 61 AKGGYRLSKPAEQISFWDVIEAIEGKEPLFRCEELRCKSISVNIDALPEEYTNTPCLISR 120
Query: 110 VLRKALNAFFDVLTQYSI 127
V+ A N L+ +I
Sbjct: 121 VMHDAENEMKRYLSGKNI 138
>gi|229547399|ref|ZP_04436124.1| Rrf2 family transcriptional regulator protein [Enterococcus
faecalis TX1322]
gi|256854843|ref|ZP_05560207.1| rrf2 family protein [Enterococcus faecalis T8]
gi|229307431|gb|EEN73418.1| Rrf2 family transcriptional regulator protein [Enterococcus
faecalis TX1322]
gi|256710403|gb|EEU25447.1| rrf2 family protein [Enterococcus faecalis T8]
gi|315028301|gb|EFT40233.1| Rrf2 family protein [Enterococcus faecalis TX4000]
Length = 141
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + I +L IA + + + + +++ L KAG++ ++RG
Sbjct: 1 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + ++I++ ++ A E + + +C + + L + K
Sbjct: 61 -NKNTLLKKPEEISLYEIYTAVELERDIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKM 119
Query: 119 FDVLTQYSIECLVRN 133
+ L ++ ++
Sbjct: 120 EEELKSITLADVIHE 134
>gi|313682187|ref|YP_004059925.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
DSM 16994]
gi|313155047|gb|ADR33725.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
DSM 16994]
Length = 137
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + YG+ + A+H +I IAE I + +L +IL L K G+++++RG
Sbjct: 4 ISTKGSYGLAAMYELALHYGQGHLQIRDIAEKANIPQNYLEQILATLRKEGLIQSIRGAG 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L + + I + +++ A E C + + P+ L + +V
Sbjct: 64 GGYLLAKAPNAIAVFEILVALEGEL----CNPTDERLQPI-----LHLYWDRIREDMKNV 114
Query: 122 LTQYSIECLVRNRSSIKK 139
+ +++ LV +++ +
Sbjct: 115 FHE-TLQDLVDQGNALNQ 131
>gi|292669316|ref|ZP_06602742.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC
43541]
gi|292649157|gb|EFF67129.1| Rrf2 family transcriptional regulator [Selenomonas noxia ATCC
43541]
Length = 147
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 62/141 (43%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L+ +++ D P +A + + + + +IL L +AG++ RG
Sbjct: 1 MQISSRFTIAIHILICVDLYSADAPATSESLAGSIGVHPVVIRRILGQLRRAGLITVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
R GG + RP +IT+ D+ +A E S + + CP+ + L L +
Sbjct: 61 REGGAHIVRPLGEITLADIFRAVESIGSDTLFSFHENPNPACPVGRNIHNVLDGHLAQIQ 120
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
A + Q ++ ++
Sbjct: 121 RAMEHSMEQTTLADVIAETRE 141
>gi|238926642|ref|ZP_04658402.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC
43531]
gi|238885588|gb|EEQ49226.1| Rrf2 family transcriptional regulator [Selenomonas flueggei ATCC
43531]
Length = 156
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L+ + P ++ + + + +IL L +AG++ RG
Sbjct: 12 MQISSRFTIAVHILICVDLFGKREPATSESLSGSIGAHPVVIRRILGQLRRAGLITVARG 71
Query: 60 RRGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
R GG + + IT+ D+ +A E + + CP+ L L
Sbjct: 72 REGGAHIAKELTDITLADIFRAVESISGQSLFSFHENPNPACPVGSHIHDVLDHRLADIQ 131
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
+A + + ++ +++
Sbjct: 132 HAMEKEMEETTLADVIKEARK 152
>gi|82702897|ref|YP_412463.1| BadM/Rrf2 family transcriptional regulator [Nitrosospira
multiformis ATCC 25196]
gi|82410962|gb|ABB75071.1| transcriptional regulator, BadM/Rrf2 family [Nitrosospira
multiformis ATCC 25196]
Length = 156
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ T Y I+ L+Y A IAE +L KILQ L K ++ + RG
Sbjct: 1 MILSRTTQYAIQALIYMATQPPGVAVLNRTIAECLRSPPTYLAKILQELCKGNLLYSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
++GG L +D+I ++ +V+ TE F +C K+ C +C + +
Sbjct: 61 KQGGFCLRESSDKINLMQIVRITEGPGFTEDCVLGLKV-CSDTTACPMHAKWWPIKQEIV 119
Query: 120 DVLTQYSIECLVR 132
+L +++ L
Sbjct: 120 KLLQGQTLDTLAA 132
>gi|154254085|ref|YP_001414909.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154158035|gb|ABS65252.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
lavamentivorans DS-1]
Length = 149
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 61/138 (44%), Gaps = 4/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ L+K+T + ++ AI+ P + +I + I + +L +++Q LV AGI++ VRG
Sbjct: 2 LRLSKKTWLALEAVVDVAINARPDPVQSKEITKRQGIPQRYLEQVMQQLVHAGILKGVRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L R +I + +VV+ + +G + + ++
Sbjct: 62 PRGGYTLARERRRIPVGEVVRVVG---AMEASDEPTATAPSELGERVIAPLWQEVQRELM 118
Query: 120 DVLTQYSIECLVRNRSSI 137
L +IE + R +
Sbjct: 119 AKLDNITIEDMCRKAEEV 136
>gi|86134276|ref|ZP_01052858.1| transcriptional regulator [Polaribacter sp. MED152]
gi|85821139|gb|EAQ42286.1| transcriptional regulator [Polaribacter sp. MED152]
Length = 142
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 66/139 (47%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+K+T YGI+ L Y A P I+ I+++ IS FL IL L K G++ + +G+
Sbjct: 2 LSKKTKYGIKALTYLAKQEHKMPIAIATISKSENISLKFLESILLTLRKNGLLGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + D+I + +++ E + C + DCP +C + ++ + +
Sbjct: 62 GGYYLLKKPDEILMTTIMRILEGPISMVPCVSLNFYEKCDDCPDENACAVHKLMIQVRDN 121
Query: 118 FFDVLTQYSIECLVRNRSS 136
+ ++ L N S+
Sbjct: 122 TLQIFRNTTLADLTINASN 140
>gi|29377625|ref|NP_816779.1| rrf2 family protein [Enterococcus faecalis V583]
gi|227517217|ref|ZP_03947266.1| Rrf2 family transcriptional regulator [Enterococcus faecalis
TX0104]
gi|227554593|ref|ZP_03984640.1| Rrf2 family transcriptional regulator [Enterococcus faecalis HH22]
gi|229547972|ref|ZP_04436697.1| Rrf2 family transcriptional regulator [Enterococcus faecalis ATCC
29200]
gi|293385289|ref|ZP_06631105.1| Rrf2 family protein [Enterococcus faecalis R712]
gi|293389698|ref|ZP_06634142.1| Rrf2 family protein [Enterococcus faecalis S613]
gi|294779157|ref|ZP_06744567.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis
PC1.1]
gi|300861490|ref|ZP_07107574.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TUSoD
Ef11]
gi|307270509|ref|ZP_07551807.1| Rrf2 family protein [Enterococcus faecalis TX4248]
gi|307273674|ref|ZP_07554902.1| Rrf2 family protein [Enterococcus faecalis TX0855]
gi|307276598|ref|ZP_07557716.1| Rrf2 family protein [Enterococcus faecalis TX2134]
gi|307284797|ref|ZP_07564953.1| Rrf2 family protein [Enterococcus faecalis TX0860]
gi|307288388|ref|ZP_07568380.1| Rrf2 family protein [Enterococcus faecalis TX0109]
gi|307292194|ref|ZP_07572058.1| Rrf2 family protein [Enterococcus faecalis TX0411]
gi|312902009|ref|ZP_07761271.1| Rrf2 family protein [Enterococcus faecalis TX0470]
gi|312905479|ref|ZP_07764593.1| Rrf2 family protein [Enterococcus faecalis TX0635]
gi|312906640|ref|ZP_07765640.1| Rrf2 family protein [Enterococcus faecalis DAPTO 512]
gi|312910899|ref|ZP_07769734.1| Rrf2 family protein (putative transcriptional regulator)
[Enterococcus faecalis DAPTO 516]
gi|312953278|ref|ZP_07772122.1| Rrf2 family protein [Enterococcus faecalis TX0102]
gi|29345093|gb|AAO82849.1| rrf2 family protein [Enterococcus faecalis V583]
gi|227075314|gb|EEI13277.1| Rrf2 family transcriptional regulator [Enterococcus faecalis
TX0104]
gi|227176270|gb|EEI57242.1| Rrf2 family transcriptional regulator [Enterococcus faecalis HH22]
gi|229306848|gb|EEN72844.1| Rrf2 family transcriptional regulator [Enterococcus faecalis ATCC
29200]
gi|291077489|gb|EFE14853.1| Rrf2 family protein [Enterococcus faecalis R712]
gi|291080945|gb|EFE17908.1| Rrf2 family protein [Enterococcus faecalis S613]
gi|294453790|gb|EFG22182.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis
PC1.1]
gi|295114481|emb|CBL33118.1| transcriptional regulator, BadM/Rrf2 family [Enterococcus sp. 7L76]
gi|300848951|gb|EFK76704.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis TUSoD
Ef11]
gi|306496700|gb|EFM66253.1| Rrf2 family protein [Enterococcus faecalis TX0411]
gi|306500688|gb|EFM70013.1| Rrf2 family protein [Enterococcus faecalis TX0109]
gi|306503056|gb|EFM72313.1| Rrf2 family protein [Enterococcus faecalis TX0860]
gi|306506708|gb|EFM75860.1| Rrf2 family protein [Enterococcus faecalis TX2134]
gi|306509687|gb|EFM78729.1| Rrf2 family protein [Enterococcus faecalis TX0855]
gi|306513090|gb|EFM81724.1| Rrf2 family protein [Enterococcus faecalis TX4248]
gi|310627288|gb|EFQ10571.1| Rrf2 family protein [Enterococcus faecalis DAPTO 512]
gi|310628783|gb|EFQ12066.1| Rrf2 family protein [Enterococcus faecalis TX0102]
gi|310631208|gb|EFQ14491.1| Rrf2 family protein [Enterococcus faecalis TX0635]
gi|311288767|gb|EFQ67323.1| Rrf2 family protein (putative transcriptional regulator)
[Enterococcus faecalis DAPTO 516]
gi|311290945|gb|EFQ69501.1| Rrf2 family protein [Enterococcus faecalis TX0470]
gi|315026525|gb|EFT38457.1| Rrf2 family protein [Enterococcus faecalis TX2137]
gi|315031868|gb|EFT43800.1| Rrf2 family protein [Enterococcus faecalis TX0017]
gi|315034782|gb|EFT46714.1| Rrf2 family protein [Enterococcus faecalis TX0027]
gi|315144200|gb|EFT88216.1| Rrf2 family protein [Enterococcus faecalis TX2141]
gi|315146528|gb|EFT90544.1| Rrf2 family protein [Enterococcus faecalis TX4244]
gi|315152847|gb|EFT96863.1| Rrf2 family protein [Enterococcus faecalis TX0031]
gi|315154594|gb|EFT98610.1| Rrf2 family protein [Enterococcus faecalis TX0043]
gi|315159542|gb|EFU03559.1| Rrf2 family protein [Enterococcus faecalis TX0312]
gi|315161290|gb|EFU05307.1| Rrf2 family protein [Enterococcus faecalis TX0645]
gi|315164374|gb|EFU08391.1| Rrf2 family protein [Enterococcus faecalis TX1302]
gi|315167047|gb|EFU11064.1| Rrf2 family protein [Enterococcus faecalis TX1341]
gi|315171134|gb|EFU15151.1| Rrf2 family protein [Enterococcus faecalis TX1342]
gi|315172883|gb|EFU16900.1| Rrf2 family protein [Enterococcus faecalis TX1346]
gi|315573196|gb|EFU85387.1| Rrf2 family protein [Enterococcus faecalis TX0309B]
gi|315577066|gb|EFU89257.1| Rrf2 family protein [Enterococcus faecalis TX0630]
gi|315581302|gb|EFU93493.1| Rrf2 family protein [Enterococcus faecalis TX0309A]
gi|323479104|gb|ADX78543.1| transcriptional regulator family protein [Enterococcus faecalis 62]
gi|327536296|gb|AEA95130.1| Rrf2 family transcriptional regulator [Enterococcus faecalis OG1RF]
gi|329577825|gb|EGG59248.1| transcriptional regulator, Rrf2 family [Enterococcus faecalis
TX1467]
Length = 141
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 19/135 (14%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + I +L IA + + + + +++ L KAG++ ++RG
Sbjct: 1 MAMSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + ++I++ ++ A E + + +C + + L + K
Sbjct: 61 -NKNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKM 119
Query: 119 FDVLTQYSIECLVRN 133
+ L ++ ++
Sbjct: 120 EEELKSITLADVIHE 134
>gi|254459294|ref|ZP_05072715.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
bacterium GD 1]
gi|207083907|gb|EDZ61198.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
bacterium GD 1]
Length = 133
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ ++Y I L+ + P ++ I + FL KILQ L K GI+++ +G
Sbjct: 1 MLITRASEYAILSLIVLS-KATSPMDSETLSNQLSIPKSFLAKILQSLAKKGILKSFKGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
GG L + I++L V+ A E + + DCP C + L K
Sbjct: 60 NGGFTLLKDPKDISMLSVMSAVEGKAPAVFDCSPSQKDCPSDRAELCSIWPFLNKLQGKI 119
Query: 119 FDVLTQYSIECLVR 132
D L + S++ ++
Sbjct: 120 DDFLAELSLDDILE 133
>gi|114776741|ref|ZP_01451784.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1]
gi|114552827|gb|EAU55258.1| Rrf2 family protein [Mariprofundus ferrooxydans PV-1]
Length = 151
Score = 89.6 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ LTK TDYGI +L A +++AE I + KILQ L+ ++ + RG
Sbjct: 2 LRLTKLTDYGILLLTRMASSEQLRFTATELAEMTHIPMPTVSKILQMLLHENLLSSTRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG +L R A QI I DV+ E S + EC + C C ++ ++ A
Sbjct: 62 RGGYQLTRDASQINIRDVINVFEGSIALTECNIEGSV-CDQHDVCSTSNNWKRINIAVGQ 120
Query: 121 VLTQYSIECL 130
L S+ +
Sbjct: 121 ALEGISLADM 130
>gi|255321430|ref|ZP_05362590.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae
RM3277]
gi|255301583|gb|EET80840.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter showae
RM3277]
Length = 134
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK ++Y + L+Y A D P+ + ++ IS+ FL KILQ L + GI+ + +G
Sbjct: 1 MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILVSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + ++I+I +++ A + V EC ++ G C + + +
Sbjct: 60 NGGFMLAQKPEEISIKRIIESAEKRKMAVFECSISADSCASSKGGMCQIWPMFSALQSKI 119
Query: 119 FDVLTQYSIECLVRN 133
D L ++ +++
Sbjct: 120 DDFLDTITLANIIKK 134
>gi|167750933|ref|ZP_02423060.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702]
gi|167656112|gb|EDS00242.1| hypothetical protein EUBSIR_01918 [Eubacterium siraeum DSM 15702]
gi|291557420|emb|CBL34537.1| rrf2 family protein (putative transcriptional regulator)
[Eubacterium siraeum V10Sc8a]
Length = 135
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T TDY IR++ + + ND I+E + + F KIL+ L AGIV + +G
Sbjct: 1 MHITLETDYAIRIVDFM-VKNDGRFDAKAISEKTYVPQTFAMKILRKLGNAGIVNSYKGT 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
+GG L R ++++ DVV+A E ++ + C H +C + C + +
Sbjct: 60 KGGYELGRSPSELSLYDVVEAVEGTYMFSRCLDGH-YNCNRAENGLPCNYRIAFARISDI 118
Query: 118 FFDVLTQYSIEC 129
D L + + +
Sbjct: 119 VCDELKKLTFDD 130
>gi|302344421|ref|YP_003808950.1| BadM/Rrf2 family transcriptional regulator [Desulfarculus baarsii
DSM 2075]
gi|301641034|gb|ADK86356.1| transcriptional regulator, BadM/Rrf2 family [Desulfarculus baarsii
DSM 2075]
Length = 142
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
H+++ + + Y A +IA SE L K++Q L KAG+V + RG
Sbjct: 6 HISEAASLALHTMAYLAAEPGRKASTHEIARVMGASEAHLAKVMQRLGKAGLVVSQRGPG 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L + +Q+++L+V A E C + G C + +L K D
Sbjct: 66 GGFTLAKTPEQVSLLEVYAAAEGQLGEVGCLLGQPVC---GGHCIMGELLGKLSQEIKDY 122
Query: 122 LTQYSIECLVRN 133
+ L
Sbjct: 123 FANTKLGDLTAE 134
>gi|283778130|ref|YP_003368885.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
6068]
gi|283436583|gb|ADB15025.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
6068]
Length = 142
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ +T+Y ++ A ++ P RI IA+ I FL +IL L AG+V++VR
Sbjct: 1 MIVSAKTEYACIAMLELAARDERSEPVRIKDIADRHGIPSRFLVQILLQLKTAGLVQSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG +L P +IT+ V+ A + + L +
Sbjct: 61 GASGGYQLALPPREITLGTVMSAVDAQSARVVSSLTSDSPTTR----VLHDRWQLVAEKQ 116
Query: 119 FDVLTQYSIECLVRN 133
++L + ++ LV
Sbjct: 117 RELLEEVTLADLVTE 131
>gi|182679703|ref|YP_001833849.1| BadM/Rrf2 family transcriptional regulator [Beijerinckia indica
subsp. indica ATCC 9039]
gi|182635586|gb|ACB96360.1| transcriptional regulator, BadM/Rrf2 family [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 162
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +AG+V T+ G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQAGLVHTMLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL RP ++T LD+V+A E C C C + ++ +
Sbjct: 61 PSGGYRLARPPTELTFLDIVEAVEGRTQTFVCNNIRVNNPCRPRDHCDSSPCAVARIMWE 120
Query: 114 ALNAFFDVLTQYSIECL 130
A A+ L ++ L
Sbjct: 121 ADEAWRQKLRGVTLSDL 137
>gi|322382961|ref|ZP_08056793.1| transcriptional regulator-like protein of cysteine biosynthesis
[Paenibacillus larvae subsp. larvae B-3650]
gi|321153081|gb|EFX45539.1| transcriptional regulator-like protein of cysteine biosynthesis
[Paenibacillus larvae subsp. larvae B-3650]
Length = 126
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 9/124 (7%)
Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+M A + + P + IAE +SE +L +++ PL AG+V+++RG GG L RPA+Q
Sbjct: 1 MMELAARYGEGPTSLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQ 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
IT +++ E + + + ++ VL ++ L+
Sbjct: 61 ITTGQIIRVLEGPISPVDFEEEDDPAK--------RDLWIRIRDSIAQVLDSTTLASLIS 112
Query: 133 NRSS 136
Sbjct: 113 YEDE 116
>gi|315181355|gb|ADT88268.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC
11218]
Length = 172
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 11/135 (8%)
Query: 4 TKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI L+ + P + + A + +L KI KAG+VE+ GR+
Sbjct: 5 SSGVEYGIHCLVNMVDEDGEPREMSVREAANLQGVPYDYLGKIFTKFSKAGLVESSEGRK 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG +L + +I++LD+ A + + +C F G CG+ +V+R
Sbjct: 65 GGYKLAKSPAEISVLDIAIAIDGEKSIFDCKEIRQRMNIFTDDVHQWACEGMCGIHAVMR 124
Query: 113 KALNAFFDVLTQYSI 127
KA N VL + SI
Sbjct: 125 KAQNQMQQVLAEQSI 139
>gi|289524284|ref|ZP_06441138.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
gi|289502456|gb|EFD23620.1| Rrf2 family protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
Length = 150
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 3/131 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+++ + + A+H + + +++E +SE K+ Q L KAG+V ++RG
Sbjct: 7 QISQAASIALHGMGILALH-ERRISVRKLSEMISVSEQHAAKVFQRLTKAGLVNSLRGPS 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GGV L PA +IT+ +V +A E C + K CP GSC +L++ F
Sbjct: 66 GGVELAVPASKITLYEVYEAIEGKPSSDYCLIN-KQHCP-FGSCIFGGMLKRINEEFIKY 123
Query: 122 LTQYSIECLVR 132
L+ ++ LVR
Sbjct: 124 LSSRTLADLVR 134
>gi|238019616|ref|ZP_04600042.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748]
gi|237863657|gb|EEP64947.1| hypothetical protein VEIDISOL_01490 [Veillonella dispar ATCC 17748]
Length = 157
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A+ + S +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 8 MKLNQATDYAFRMVLHMALLPSGTKLTGSVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 67
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
GG L R +I++LDV++A E ++ C S C +G C + + +
Sbjct: 68 VDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--MGHCAINEAMGTIQD 125
Query: 117 AFFDVLTQYSIECLVRNRSSIKK 139
+ L Q + + L + I+
Sbjct: 126 QLINQLEQVNFKTLAQREQLIEA 148
>gi|313682882|ref|YP_004060620.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
DSM 16994]
gi|313155742|gb|ADR34420.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
DSM 16994]
Length = 134
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/135 (28%), Positives = 66/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TK ++Y + L+ A +P +++ IS+ FL KILQ L + GI+ + +G
Sbjct: 1 MLMTKASEYALLSLIVLA-KAGHPLDADTLSKELDISKSFLAKILQSLARQGILNSYKGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAF 118
GG L R + +IT+L+V++A E + + DCP SCGL L +
Sbjct: 60 NGGFELARHSREITVLEVMEAAEGKSPAVFSCSPSQEDCPSNKAMSCGLWPFLNRLQGKV 119
Query: 119 FDVLTQYSIECLVRN 133
L ++E ++
Sbjct: 120 DAFLGTLTLEAILEE 134
>gi|221315013|ref|ZP_03596818.1| hypothetical protein BsubsN3_14952 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
Length = 110
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 1 MKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
GG L D IT D+++ E + +C
Sbjct: 61 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKC 92
>gi|294811041|ref|ZP_06769684.1| Rrf2 family protein, putative transcriptional regulator
[Streptomyces clavuligerus ATCC 27064]
gi|294323640|gb|EFG05283.1| Rrf2 family protein, putative transcriptional regulator
[Streptomyces clavuligerus ATCC 27064]
Length = 136
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
M A+H+D P ++A A + K++ L G+VE RGR GG+ L
Sbjct: 1 MRLAVHDDEPAPTTREVAAAVGVPHSHAAKVVTRLQHLGVVEARRGRGGGLALTTAGRTG 60
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+I +V+ E + V C CPL +C L SVLR A AF+ L Y+++ LV +
Sbjct: 61 SIGRLVRELEGTGDVVGC--EDAPPCPLRSACRLRSVLRTAQEAFYTALDPYTVDDLVAS 118
Query: 134 RS 135
+
Sbjct: 119 PT 120
>gi|163792642|ref|ZP_02186619.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
proteobacterium BAL199]
gi|159182347|gb|EDP66856.1| transcriptional regulator, BadM/Rrf2 family protein [alpha
proteobacterium BAL199]
Length = 180
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 59/139 (42%), Gaps = 13/139 (9%)
Query: 7 TDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
+Y + L+ A+ +A+ + F+ K+L L KAG+V G RGG R
Sbjct: 8 VEYALHTLLNLALAPPGTAPSARDLADFQRLPVPFIQKLLTQLEKAGLVTGAEGIRGGWR 67
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-----------CGLTSVLRKA 114
+ R A+ IT+LDV A + + +C + + C L C + +V+ A
Sbjct: 68 MARAANAITVLDVADAAKGDDALFKC-RNIRARCALWDDASPPQAAVSGVCSIHAVMLSA 126
Query: 115 LNAFFDVLTQYSIECLVRN 133
A L +++ +V
Sbjct: 127 EAAMRQELAAHTLADIVDR 145
>gi|323518180|gb|ADX92561.1| transcriptional regulator [Acinetobacter baumannii TCDC-AB0715]
Length = 164
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 9/123 (7%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ D P +AE +S F+ KI L KAG+V G RGG L R A +I+ LD+V
Sbjct: 3 NEDKPLSSKDLAELQGVSPSFMAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIV 62
Query: 80 KATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
A E + EC F + D G C + +V+ +A A D L +++ +
Sbjct: 63 NAIEAEKPLFECQEVRGKCAVFNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDI 122
Query: 131 VRN 133
Sbjct: 123 ADR 125
>gi|288817531|ref|YP_003431878.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
thermophilus TK-6]
gi|288786930|dbj|BAI68677.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
thermophilus TK-6]
gi|308751134|gb|ADO44617.1| transcriptional regulator, BadM/Rrf2 family [Hydrogenobacter
thermophilus TK-6]
Length = 151
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 1/114 (0%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ D ++ +IAEA I + FL KI L + ++ + +G GG L P +QITI+DV+
Sbjct: 20 NRDRLVKVEEIAEAQKIPKPFLSKIFHKLARERVLRSYKGPTGGFALAVPPEQITIMDVI 79
Query: 80 KATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ +E + + C + + V C + + + D L +I L
Sbjct: 80 RYLDEDYKLDYCALRPGRCEEWQVSPCRVHEKWTRLRDTIMDYLNNTTIAELAE 133
>gi|83646262|ref|YP_434697.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
gi|83634305|gb|ABC30272.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
Length = 156
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 56/135 (41%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R I +L A+H R IA + + + ++L L +AG+ + G
Sbjct: 1 MPTSTRFAVAIHILADLALHKGKAVRSEDIACSVNTNAAVVRRLLGVLAEAGMTRSQLGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD IT+LDV +A EE + + C + + L ++
Sbjct: 61 GGGALLARPADAITLLDVYQAVEEPNYFVLHRSKPNPKCYIGCNITSVLEDEFQRISATM 120
Query: 119 FDVLTQYSIECLVRN 133
L Q +I + R
Sbjct: 121 DASLAQTTIADVARQ 135
>gi|310659303|ref|YP_003937024.1| badm/rrf2 family transcriptional regulator [Clostridium sticklandii
DSM 519]
gi|308826081|emb|CBH22119.1| Transcriptional regulator, BadM/Rrf2 family [Clostridium
sticklandii]
Length = 128
Score = 89.2 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ +DY +R++ Y A + S IA+ + F+ KIL+ L AGI + RG
Sbjct: 1 MKITQESDYALRIVQYLANQEESRVGASIIAKEQDVPLRFVLKILRKLNAAGITKAYRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG L + I+ +V++A E ++ C A+ K +C + C + L
Sbjct: 61 SGGYALTKEPGDISYKEVIEAIEGDIYLNRCLAN-KTNCTRDAADKCSIHKKLLGIQKFL 119
Query: 119 FDVLTQ 124
+ L +
Sbjct: 120 DEELGK 125
>gi|218291270|ref|ZP_03495246.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius LAA1]
gi|218238818|gb|EED06030.1| transcriptional regulator, BadM/Rrf2 family [Alicyclobacillus
acidocaldarius LAA1]
Length = 125
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 55/122 (45%), Gaps = 11/122 (9%)
Query: 12 RVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+L+ A +D P + IAE +SE +L +++ PL G V ++RG GG L R
Sbjct: 1 MLLVDLAEQQSDQPISLKSIAERNNLSEHYLEQLIAPLRNGGFVRSIRGAYGGYVLARHP 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+I I DV+ A E + + GL + + A DVL+ +++ L
Sbjct: 61 REIVIEDVLLALEGPITIVD----------EEIDDGLQVLWDRLREAIHDVLSSMTLQDL 110
Query: 131 VR 132
V
Sbjct: 111 VE 112
>gi|227499166|ref|ZP_03929301.1| transcriptional regulator [Acidaminococcus sp. D21]
gi|226904613|gb|EEH90531.1| transcriptional regulator [Acidaminococcus sp. D21]
Length = 163
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ +Y + L+Y AI I ++A ISE +L KI L K G+V V G
Sbjct: 1 MSISVGVEYALHCLIYLAIPTTSRSIGIKEMAAFQGISETYLSKIFMKLRKKGLVSAVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109
+GG RL R AD+IT DVV+A E + +C C ++
Sbjct: 61 VKGGYRLSREADEITFWDVVEAIEGPHYRFQCAEIRQHMAIVDPHELPPSFSECPCLISE 120
Query: 110 VLRKALNAFFDVLTQYSI 127
V++ A + + L +I
Sbjct: 121 VMKGAEDQYRTYLKGRTI 138
>gi|82659477|gb|ABB88853.1| putative transcriptional regulator [Azospirillum brasilense]
Length = 151
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++K+ + I ++ A + P + +I I + +L ++LQ LV+ G++ VRG
Sbjct: 2 LRISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVRDGVLAGVRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG RL R +IT+ ++VK + ++G + + +
Sbjct: 62 PRGGYRLARERRRITLGEIVKVVRSMETATDPIEEPAGS--ILGHKVVRPLWNELQEECM 119
Query: 120 DVLTQYSIECLV 131
L +IE L
Sbjct: 120 KKLDDITIEDLC 131
>gi|149180394|ref|ZP_01858899.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
sp. SG-1]
gi|148852586|gb|EDL66731.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
sp. SG-1]
Length = 141
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 53/136 (38%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++ + L+Y A D+ IA+ + + + KI+ L G V+T G
Sbjct: 1 MYVNSEFTIAVHSLVYLAYLPDHMASSQAIAQNVATNPVRVRKIMSCLRDTGFVKTKEGT 60
Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
GG L IT+ V ++ + C + C + + + + +A
Sbjct: 61 GGGYTLTAEPGDITLGQVYRSVSYGAIKPTWCKGEREESCLISTNIQEVVNGIFTEADQY 120
Query: 118 FFDVLTQYSIECLVRN 133
F + L + +IE ++
Sbjct: 121 FAEYLDKTTIESVLNQ 136
>gi|255532922|ref|YP_003093294.1| Rrf2 family transcriptional regulator [Pedobacter heparinus DSM
2366]
gi|255345906|gb|ACU05232.1| transcriptional regulator, Rrf2 family [Pedobacter heparinus DSM
2366]
Length = 155
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/147 (21%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + +YG+R+L+ H+ I I+EA +S ++ K+ + L AG + + G
Sbjct: 1 MKITAQEEYGLRILLRIGRHDHGDGISIPAISEAEGLSGAYVAKLTRILRMAGYINSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID---CPLVGSCGLTSVLRKALN 116
+GG L + A QI I V+K + + + + C C + S+ +
Sbjct: 61 NKGGYVLAQTAGQININQVMKVLGGALYSKKFCEDYPGTLKLCTNSIDCSIRSLWQMIQF 120
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
+L + +++ L+ + +
Sbjct: 121 TVDQLLDKVTLQDLISQEQESSLLLES 147
>gi|225018166|ref|ZP_03707358.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum
DSM 5476]
gi|224949163|gb|EEG30372.1| hypothetical protein CLOSTMETH_02103 [Clostridium methylpentosum
DSM 5476]
Length = 132
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T +DY +R++ + A + IAE ++ F KIL+ LV AG+V++ +G
Sbjct: 1 MYITLESDYAVRIMSFLAKRREK-LDAKTIAENTGVTLRFALKILRKLVAAGVVQSFKGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID--CPLVGSCGLTSVLRKALNAF 118
+GG + R +IT+L++++ E + + C C + S+
Sbjct: 60 QGGYLIARDPSEITLLEIIETVEGRYCFSRCLGEDHECGQWCSGERCKVQSIYSNISALV 119
Query: 119 FDVLTQYSIECLV 131
+ L + + L+
Sbjct: 120 REQLAGVTFDQLI 132
>gi|19704228|ref|NP_603790.1| hypothetical protein FN0893 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296328864|ref|ZP_06871375.1| transcriptional regulator superfamily protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|19714456|gb|AAL95089.1| Hypothetical protein FN0893 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|296153985|gb|EFG94792.1| transcriptional regulator superfamily protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 140
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y ++ D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIIYYLTLNRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I C + L+K +
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCSIRHALKKIQDDLL 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D + + LV N +S++
Sbjct: 121 DDFDKINFYDLVENNASLQ 139
>gi|225028919|ref|ZP_03718111.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353]
gi|224953758|gb|EEG34967.1| hypothetical protein EUBHAL_03208 [Eubacterium hallii DSM 3353]
Length = 149
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 73/142 (51%), Gaps = 2/142 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+L+K++ YGI L+ A++ D ++S IAE IS +L +I L KAG+V +V+G
Sbjct: 1 MNLSKKSRYGITALIDLAVYAKDQCVQLSSIAERNNISVKYLEQIFSSLRKAGLVRSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL-RKALNAF 118
+GG L + + IT+ DV+ A + S+ + + + S + +L + +
Sbjct: 61 PQGGYLLAKRPESITVADVIHALDGSYLLEDERSVVSGTDEKGISTAIQKLLIDQMNDQT 120
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
+L Q ++ LV + ++
Sbjct: 121 DRLLKQLTLRNLVDSSMEYSQV 142
>gi|58617149|ref|YP_196348.1| hypothetical protein ERGA_CDS_04220 [Ehrlichia ruminantium str.
Gardel]
gi|58416761|emb|CAI27874.1| Conserved hypothetical protein [Ehrlichia ruminantium str. Gardel]
Length = 145
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 28/112 (25%), Positives = 47/112 (41%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
P RIS IA +SE +L +++ L K G++ +G GG L IT+ ++++
Sbjct: 18 QPVRISYIASNQSLSEGYLEQVIVQLKKKGLINATKGPGGGYSLSIAPHLITLSLILESI 77
Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
E+ + C + C + N D L S+E +V N
Sbjct: 78 GENIKITRCENNSPDCLSNNNRCVTHKLWDDIGNYIKDYLNNISLEDIVNNN 129
>gi|116872585|ref|YP_849366.1| transcriptional regulator Rrf2 family protein, putative [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116741463|emb|CAK20587.1| transcriptional regulator Rrf2 family protein, putative [Listeria
welshimeri serovar 6b str. SLCC5334]
Length = 141
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +I+ L KAG++++ G
Sbjct: 1 MAISTRFSVAVHILTLIDMNKERSITSDTIAASVNTNPVVIRRIMSKLKKAGLIQSSPG- 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G L + A +IT+ D+ +A E + + + + +C + + L +V A
Sbjct: 60 ISGTYLLKNATEITLYDIYQAVEVTDNLFDIHKNPNPNCEVGANIQETLDTVFIHAQQKM 119
Query: 119 FDVLTQYSIECLVRN 133
L + ++ + +
Sbjct: 120 EADLKRTTLSQITAD 134
>gi|307720665|ref|YP_003891805.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
autotrophica DSM 16294]
gi|306978758|gb|ADN08793.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
autotrophica DSM 16294]
Length = 134
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ ++Y I L+ + + P ++ IS+ FL KILQ L KA I+ + +G
Sbjct: 1 MLITRASEYAILSLILLS-KAESPMDSDTLSRELSISKSFLAKILQSLAKAQILNSYKGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
GG L + I +L+V E A DCP +C + L K
Sbjct: 60 NGGFALKKEPQDINMLEVASCVEGKAPAVFECAPSLEDCPSEKASTCSIWPFLHKLQGKI 119
Query: 119 FDVLTQYSIECLVRN 133
L ++ L+ +
Sbjct: 120 DLFLANLTLADLLND 134
>gi|320159837|ref|YP_004173061.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
UNI-1]
gi|319993690|dbj|BAJ62461.1| putative Rrf2 family DNA binding protein [Anaerolinea thermophila
UNI-1]
Length = 146
Score = 88.8 bits (219), Expect = 2e-16, Method: Composition-based stats.
Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 9/136 (6%)
Query: 2 HLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+++R DYG+++++ A + P + +AE I FL +I + L+++G + G
Sbjct: 3 RVSRRIDYGVQLMIALAQTEAERPVPTAVLAEKLHIPLPFLHQIGRSLIQSGYIRATPGP 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG+RL + + I++L +++A E + V +
Sbjct: 63 RGGLRLKQSPENISLLQIIEALEGPMRIV--------PESNGNGMMTREVWAELQEKVVA 114
Query: 121 VLTQYSIECLVRNRSS 136
L + L +
Sbjct: 115 ALASIRLSELAKKAPQ 130
>gi|223940021|ref|ZP_03631886.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
gi|223891288|gb|EEF57784.1| transcriptional regulator, BadM/Rrf2 family [bacterium Ellin514]
Length = 139
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 58/137 (42%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L S +A + S F+ +IL L KA +V T G+
Sbjct: 1 MAVNTQFSIAVHILAGLGYRCGGNVTSSTLAHSVNTSPSFVRRILAKLSKARLVHTTTGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS----VLRKALN 116
G L R IT+L+V +A + A + + CP+ SC + S VL K
Sbjct: 61 TGACCLARDPANITLLEVYQAVDAPKAFAIHKYNAQKPCPV--SCQIKSSLEGVLHKTQQ 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + L + ++ ++ +
Sbjct: 119 SLENSLAKITLADVISD 135
>gi|209522489|ref|ZP_03271083.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
gi|209497074|gb|EDZ97335.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. H160]
Length = 149
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLAMLSDAGLTTSQMGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +QIT+LDV +A E++ C + + L S++ +A A
Sbjct: 61 GGGALLARRPEQITLLDVYRAVEDAQLFGVHREEPNPACMVGRNIQGVLRSIIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L ++
Sbjct: 121 EAALAGRTLAD 131
>gi|167462502|ref|ZP_02327591.1| rrf2 family protein [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 142
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L A++++ +A + + + + +I+ L KAG+V+ G
Sbjct: 1 MKISSRFSVGVHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQVRSG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + D+IT+LD+ KA + E + + +CP+ + L VL +A
Sbjct: 60 TGGAYLLKSLDEITLLDIYKAVDVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQE 119
Query: 117 AFFDVLTQYSIECLV 131
A VL +++ LV
Sbjct: 120 AMEQVLKDITMDELV 134
>gi|289434461|ref|YP_003464333.1| transcriptional regulator Rrf2 family protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
gi|289170705|emb|CBH27245.1| transcriptional regulator Rrf2 family protein [Listeria seeligeri
serovar 1/2b str. SLCC3954]
Length = 141
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +I+ L KAG++ + G
Sbjct: 1 MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G L + A +IT+ D+ A + + + + + +C + + L +V A
Sbjct: 61 -SGTYLLKEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQDTLDTVFNHAQQQM 119
Query: 119 FDVLTQYSIECL 130
L + ++ +
Sbjct: 120 EADLKRTNLSQI 131
>gi|239828144|ref|YP_002950768.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. WCH70]
gi|239808437|gb|ACS25502.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp. WCH70]
Length = 136
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + Y A IA++ + L KIL L K I+ + G +GG L
Sbjct: 8 AVHCVAYLAQKQSQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFSLNDS 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSI 127
+ IT+ + K T E V +C +CP+ S L V A F + L +I
Sbjct: 68 PEHITLDKIFKITSEETLVPKC-PDSNENCPIGRNLSNILIRVFHNAEEHFLNYLKGVTI 126
Query: 128 ECLVRN 133
+ ++
Sbjct: 127 KDIIDE 132
>gi|262067675|ref|ZP_06027287.1| transcriptional regulator family protein [Fusobacterium
periodonticum ATCC 33693]
gi|291378399|gb|EFE85917.1| transcriptional regulator family protein [Fusobacterium
periodonticum ATCC 33693]
Length = 140
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I +C + L+K N
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSATICSTRGANCSIRLALKKIQNELL 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D + + LV N + ++
Sbjct: 121 DDFDKINFHDLVENNTGLQ 139
>gi|172041371|ref|YP_001801085.1| Rrf2 family transcriptional regulator [Corynebacterium urealyticum
DSM 7109]
gi|171852675|emb|CAQ05651.1| putative transcriptional regulator (Rrf2 family) [Corynebacterium
urealyticum DSM 7109]
Length = 164
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 9/138 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI------HNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M LT D G+RVLM + P RI +A+ S + K++ L G++
Sbjct: 1 MQLTTFADLGLRVLMVLGATQAVDAADRSPVRIQDLADQLNASRNHVAKVVNMLTSDGLL 60
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL-VGSCGLTSVLRK 113
E++RGR GGV + + ++ +++ E + V +C + CPL C L L
Sbjct: 61 ESIRGRYGGVHITEQGMRASVGALLRQLEGNREVVDC--EGALQCPLARHDCALRRRLAA 118
Query: 114 ALNAFFDVLTQYSIECLV 131
A AFF L ++ LV
Sbjct: 119 AQEAFFATLDGDTVGDLV 136
>gi|157737595|ref|YP_001490278.1| hypothetical protein Abu_1353 [Arcobacter butzleri RM4018]
gi|157699449|gb|ABV67609.1| conserved hypothetical protein [Arcobacter butzleri RM4018]
Length = 135
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ + Y I+VL+Y A N + ++++ I +L K++ L K ++ ++GR
Sbjct: 1 MILSTTSQYAIKVLIYMAEDNSKLYSVKELSKILEIPYKYLSKVMTNLSKKELILAIQGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L +P ++I + D++ A E +C + C C L ++
Sbjct: 61 YGGFKLSKPKEEIKLKDILVAL-EDESFKQCVLGGGV-CNQKNKCELHDTWDESKQTIQK 118
Query: 121 VLTQYSIECLVRNRSS 136
L + ++ L +N+
Sbjct: 119 SLLEVTLGEL-KNKDK 133
>gi|114705805|ref|ZP_01438708.1| RrF2 family protein [Fulvimarina pelagi HTCC2506]
gi|114538651|gb|EAU41772.1| RrF2 family protein [Fulvimarina pelagi HTCC2506]
Length = 138
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 5/126 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++R Y IR + A + P + IAE I + FL IL L +AG + + RG+ G
Sbjct: 2 ISQRARYAIRAVFNVADRS-TPVSAAVIAEEEAIPKKFLEAILADLKQAGFLASSRGKNG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G L P +I+ D+++ + +A C + DC V +C L + +A
Sbjct: 61 GYLLALPPAEISFADILRVIDGPLALAPCASRTAYRRCADCKDVETCETRKALLRVRDAT 120
Query: 119 FDVLTQ 124
++L
Sbjct: 121 AEILEN 126
>gi|56751534|ref|YP_172235.1| hypothetical protein syc1525_d [Synechococcus elongatus PCC 6301]
gi|81301394|ref|YP_401602.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|56686493|dbj|BAD79715.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81170275|gb|ABB58615.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus
elongatus PCC 7942]
Length = 171
Score = 88.4 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 62/140 (44%), Gaps = 5/140 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT R Y ++ L+ + D P + IA+ IS L K+L L KAG+V +G
Sbjct: 26 MKLTVRAHYSLKALIDLCLQPEDEPVSMRAIAQRQNISPTLLEKLLVELCKAGLVTATKG 85
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RRGG +L RPA +I++ D++ A E + ++ ++ +
Sbjct: 86 RRGGYQLARPAAKISLADILAAVGELSD----RDRQPLAPEEAADWVSRAIWQRLDAQWQ 141
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L Q S+ L + S +
Sbjct: 142 ATLRQVSLADLYYDARSWQA 161
>gi|320104168|ref|YP_004179759.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC
43644]
gi|319751450|gb|ADV63210.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida
ATCC 43644]
Length = 164
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
T+R +Y +R Y A + Y + ++AEA + +L K+LQ L + G++ + RG G
Sbjct: 2 FTQRVEYALRATAYLASLDGYNSTTEEVAEATKVPRAYLSKVLQELRRGGVIRSRRGVGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+ L ++T+L VV+A E + C K C L L A+
Sbjct: 62 GIVLAIDPKELTLLRVVQAVEPLQRITTCPLGLKA--HGARLCPLHKRLDDAMAKVEAAF 119
Query: 123 TQYSIECLVRNRS 135
++ ++ S
Sbjct: 120 AGVTLAQVLAEPS 132
>gi|237733505|ref|ZP_04563986.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383338|gb|EEO33429.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 134
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL TDY +R+++Y + ++++ I + ++FKIL+ L ++ +V + G
Sbjct: 1 MHLKMSTDYAVRIIIYLSEKQCR-VSSKELSKKLVIPQNYIFKILKILQESNLVNSYSGS 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L + IT+ D+++ATE + + C + + C +C K
Sbjct: 60 DGGFILKKEPKDITMFDIMQATETTTRINRCLENDEY-CSRHATTNCKARCFYIKMQMYM 118
Query: 119 FDVLTQYSIECLVR 132
D + +I+ L+
Sbjct: 119 DDTFKRMTIQDLLE 132
>gi|310826117|ref|YP_003958474.1| transcriptional regulator [Eubacterium limosum KIST612]
gi|308737851|gb|ADO35511.1| transcriptional regulator [Eubacterium limosum KIST612]
Length = 148
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 61/140 (43%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+ ++ A + IAE +S+++L ++ L +AG+V +V+
Sbjct: 1 MRISAKGRYGLAAMIAIAQGDFEGDYVPVIVIAEKLGLSKIYLEQVFSLLKRAGLVNSVK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG RL R DQI +++ A E S + P + V A
Sbjct: 61 GAQGGYRLTREPDQINAHEILTAL-EQILFENTETSVEEASPAIEHTMQKCVFTPLDRAV 119
Query: 119 FDVLTQYSIECLVRNRSSIK 138
+ L + +++ LV K
Sbjct: 120 QEHLEKITLDELVAEAGRYK 139
>gi|254303299|ref|ZP_04970657.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323491|gb|EDK88741.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 140
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y ++ D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIIYYLTLNRDKDIISSNEISAEEDIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I C + L+K +
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGADCTIRHALKKIQDDLL 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D + + LV N +S++
Sbjct: 121 DDFDKINFYDLVENNASLQ 139
>gi|134099519|ref|YP_001105180.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291008706|ref|ZP_06566679.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133912142|emb|CAM02255.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
erythraea NRRL 2338]
Length = 160
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +++ ++ + L+ A + + P S++A + +L K LQ LV+AG++ + G
Sbjct: 1 MRMSEGVEWALHSLLALAWLDDGRPVPTSRLAAGNDLPPAYLNKQLQALVRAGLLVSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112
RGG L RP ++IT++DVV A E C ++ C + + +R
Sbjct: 61 ARGGFSLARPPEKITLMDVVAAIEGPEEAFRCTEIRRRGAGANAPRREFESPCAIATAMR 120
Query: 113 KALNAFFDVLTQYSIECL 130
+A A+ L ++ +
Sbjct: 121 RAELAWRRELAAQTLADV 138
>gi|153812327|ref|ZP_01964995.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174]
gi|149831489|gb|EDM86576.1| hypothetical protein RUMOBE_02726 [Ruminococcus obeum ATCC 29174]
Length = 134
Score = 88.0 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY +RVL A + +++I E I+ F +KIL+ L K+G+V RG
Sbjct: 1 MLITRECDYAVRVLRAMA--EEKRVSVNEICEKELITAPFAYKILKKLQKSGMVRGYRGV 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL----VGSCGLTSVLRKALN 116
GG L DQIT+ DV + F+ +C DC +C + L +
Sbjct: 59 HGGYSLNCDLDQITLYDVYTTIDPGMFIIDCLEPG-YDCARNSADGQNCSVHCELAEIQE 117
Query: 117 AFFDVLTQYSIECLVR 132
+L + S++ L+
Sbjct: 118 ELCRMLKRKSLKKLIN 133
>gi|317132029|ref|YP_004091343.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
harbinense YUAN-3]
gi|315470008|gb|ADU26612.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
harbinense YUAN-3]
Length = 135
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 3/128 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY +R++ A ++E ++ F KI + L +AGIV + +G
Sbjct: 1 MRITQEADYAVRIIDCLAT-AGTRMDARTVSEKTGVTLRFTLKIFRKLGQAGIVRSFKGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
+GG L R D+I + V++A + + C L + C +V +
Sbjct: 60 QGGYELARDPDEINLRQVIEAVDGPININRCMTGSLPCALLEDTRLCYYHTVFNELSKTI 119
Query: 119 FDVLTQYS 126
+ L +
Sbjct: 120 QEKLESVT 127
>gi|331092089|ref|ZP_08340920.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402290|gb|EGG81861.1| hypothetical protein HMPREF9477_01563 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 131
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 39/131 (29%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TDYGIR+++Y I N+ +AE I + ++ K+ + L A IV + +G
Sbjct: 1 MQLSATTDYGIRIVLYL-IKNNEIISSGVLAEQLEIPKTYVLKVTKKLELANIVTSYQGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GG+ L QIT+ DV+ A E + + +C ++ D C L V A
Sbjct: 60 NGGIGLAGDPAQITLWDVISAVESTTVINKCMEQENEYDVKAEDYCKLRKVYGLLQQAVE 119
Query: 120 DVLTQYSIECL 130
D L + L
Sbjct: 120 DRLQSIKLIDL 130
>gi|257460500|ref|ZP_05625601.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis
RM3268]
gi|257441831|gb|EEV16973.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter gracilis
RM3268]
Length = 137
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + ++ A + + I+ IS FL KILQ L +AG++ + +G
Sbjct: 1 MLFTKASEYALLSMICIAG-KEESMDVDSISSELGISRSFLAKILQNLARAGLLNSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
+GG L R AD+IT+ +++K A V +C A CP + C + + +
Sbjct: 60 KGGFVLARNADKITLSEIIKSAERRKATVFDCTAEGIDACPNGRTLCRVNLMFGELQEKV 119
Query: 119 FDVLTQYSIECLVRNRSS 136
+ + ++ ++
Sbjct: 120 DEYMDTITLADIIGKERK 137
>gi|253577980|ref|ZP_04855252.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850298|gb|EES78256.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 135
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY +RV+ A+ + +S I E I+ F +KIL+ L KA IV+ RG
Sbjct: 1 MFITRECDYAVRVVR--ALWGESRLSVSDICEKEAITAPFAYKILKKLQKAEIVKGYRGV 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116
GG L R D++T+ +V A + F+ EC K +C G C + L +
Sbjct: 59 HGGYSLNRGLDELTLYEVYSAIDPDMFIIECL-DPKYNCVRDGQDGLPCLVHRELLSVQD 117
Query: 117 AFFDVLTQYSIECLVRN 133
+L + +I+ ++
Sbjct: 118 ELISLLKRKTIQQIMEE 134
>gi|327540342|gb|EGF26928.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
Length = 139
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+K +Y +R + P +AE + +L ++LQ L AG+V + G G
Sbjct: 2 LSKTAEYALRAIACMGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G LC P D +TILDVV + +C K C L + L + A +
Sbjct: 62 GYELCVPTDTLTILDVVNTVAPVERIRKCPLGLK---SHTDLCPLHAELDRVYAATEEAF 118
Query: 123 TQYSIECLVRNRSSIKKI 140
+I+ LV + + I +
Sbjct: 119 RGVTIDDLVNSTNPILPL 136
>gi|292670938|ref|ZP_06604364.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
noxia ATCC 43541]
gi|292647559|gb|EFF65531.1| iron-sulfur cluster assembly transcription factor IscR [Selenomonas
noxia ATCC 43541]
Length = 147
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+ ++ A + P I I+E IS+++L ++ L ++ +V +++
Sbjct: 1 MKISAKGRYGLAAMIVLARSYESSSPVTIISISEHLGISKIYLEQVFSLLKRSKLVNSIK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG +L R +IT +++ + + E + + + +
Sbjct: 61 GSQGGYQLSRHPREITAYEILSSI--EISLIEKTGTVSEKMDQLNHVLARELFDQLDKNI 118
Query: 119 FDVLTQYSIECLV 131
F+ L ++E L+
Sbjct: 119 FETLNAITLEGLL 131
>gi|229542592|ref|ZP_04431652.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
36D1]
gi|229327012|gb|EEN92687.1| transcriptional regulator, BadM/Rrf2 family [Bacillus coagulans
36D1]
Length = 145
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 64/137 (46%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R GI +L ++ D + +AE+ + + + KI+ L ++G++E G+
Sbjct: 1 MSISSRFAVGIHILALIEMNKDGVSSSEFLAESVNTNPVVIRKIMGMLKRSGLIEVHPGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
G RL + IT+LDV KA + + + CP+ + + + +
Sbjct: 61 -AGARLAKALSDITLLDVYKAVNVVQDKALFSIHRNPNPKCPVGRNIQNTIEPIFEASQM 119
Query: 117 AFFDVLTQYSIECLVRN 133
A VL Q ++E +V++
Sbjct: 120 AMEKVLEQVTLEDVVKD 136
>gi|227820042|ref|YP_002824013.1| Rrf2 family transcriptional regulator [Sinorhizobium fredii NGR234]
gi|36958592|gb|AAQ87060.1| probable RF2 family protein [Sinorhizobium fredii NGR234]
gi|227339041|gb|ACP23260.1| putative Rrf2 family transcriptional regulator protein
[Sinorhizobium fredii NGR234]
Length = 162
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 58/139 (41%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +AG+V T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKSLAEFHGVPKEYLSKALQSLSQAGLVHTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL R ++T LD+V+A E C C G+C + V+ +
Sbjct: 61 PSGGYRLARKPAELTFLDIVEAVEGKARTFVCNNIRANNPCRPQGYCETGACAVARVMWE 120
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A+ + L + L+
Sbjct: 121 ADEAWREKLRSVRLSDLID 139
>gi|34762328|ref|ZP_00143331.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237741835|ref|ZP_04572316.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256845171|ref|ZP_05550629.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2]
gi|294785526|ref|ZP_06750814.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
gi|27887982|gb|EAA25046.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229429483|gb|EEO39695.1| conserved hypothetical protein [Fusobacterium sp. 4_1_13]
gi|256718730|gb|EEU32285.1| FeS assembly SUF system regulator [Fusobacterium sp. 3_1_36A2]
gi|294487240|gb|EFG34602.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
Length = 140
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 1/139 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIIYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I C + L+K +
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSTTICSTRGADCTIRHALKKIQDELL 120
Query: 120 DVLTQYSIECLVRNRSSIK 138
D + + LV N + ++
Sbjct: 121 DDFDKINFYDLVENSTGLQ 139
>gi|54022226|ref|YP_116468.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54013734|dbj|BAD55104.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 176
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 57/159 (35%), Gaps = 26/159 (16%)
Query: 1 MHLTKRTDYGIRVLMYCAI-------------------------HNDYPNRISQIAEACC 35
MH+T + DY +R L+ A + IA A
Sbjct: 1 MHITAKVDYAVRTLLEIARLTPAEITPATAGCVAEPGVRPDAGVAAPAKVKAETIAAAQQ 60
Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
I L +L L +A +V + RG GG RL RPA QI++ DV++A E
Sbjct: 61 IPPKVLETVLSDLRRAELVTSRRGPDGGYRLARPAAQISVADVIRAIEGPLASVRGQRPE 120
Query: 96 KIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ + L V VL SIE + +R
Sbjct: 121 DVRYEGMAE-PLQRVWIALRVNIRAVLENVSIEQIAADR 158
>gi|317403134|gb|EFV83661.1| transcriptional regulator [Achromobacter xylosoxidans C54]
Length = 159
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +++ ++ + + A + ND P S++A A + +L K LQ LV+AGI + G
Sbjct: 1 MKMSEGVEWALHCCLTLAWVGNDGPVPTSRLAAAFELPSHYLNKFLQSLVRAGIFTSSAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDC-----PLVGSCGLTSVLR 112
+GG +L + + I++LDVV A E + C C CG+ + ++
Sbjct: 61 AKGGFQLAKAPEAISLLDVVMAIEGDEWAFRCTEIRQRGAGCLAKPNDFARPCGIAAAMQ 120
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A A+ L +I L++
Sbjct: 121 RAETAWRKELAAQTIADLIK 140
>gi|298248776|ref|ZP_06972581.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297551435|gb|EFH85301.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 164
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 49/137 (35%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + +L M A QIA + + +F+ +IL L KA +V
Sbjct: 1 MRANTHFTVALHILTWMALASQQQEIMTSDQIAGSVNTNPVFIRRILGRLHKAHLVNVHH 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
G G L +P ++I++L+V +A E+ C + L A
Sbjct: 61 GTSAGWTLAQPPEKISLLEVYQAVEQEPLFELHHTPPNQGCVVGKGIQPALKRFYSDAEA 120
Query: 117 AFFDVLTQYSIECLVRN 133
A Q S+ ++
Sbjct: 121 AMQQQFAQVSVADVLDE 137
>gi|330836544|ref|YP_004411185.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
DSM 17374]
gi|329748447|gb|AEC01803.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta coccoides
DSM 17374]
Length = 146
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R Y + L++ A+ + I+E IS +L ++ PL + I++ R
Sbjct: 1 MRISTRGRYSLEALLFIALVQDAESIVSAHLISEKTGISYGYLEQLFIPLKRTRIIKGSR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG R+ D+IT+ D++++ E S + S + + +
Sbjct: 61 GAKGGYRIASDLDKITVGDILRSVENSLKDSSRPDSAVRQDISNPIPKVKETWAELHDTI 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+ ++ +V + +
Sbjct: 121 SGFIDSLTLADVVSSYHKMND 141
>gi|315302753|ref|ZP_07873529.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
gi|313628876|gb|EFR97233.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
Length = 140
Score = 88.0 bits (217), Expect = 4e-16, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ R + +L I+ + IA + + + + +I+ L KAG++ + G
Sbjct: 2 ISTRFSVAVHILTLIDINQERAITSDFIAASVNTNPVVIRRIMSKLKKAGLIHSSPGV-S 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + A +IT+ D+ A + + + + + +C + + L +V A
Sbjct: 61 GTYLLKAASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQDTLDTVFNHAQQQMEA 120
Query: 121 VLTQYSIECLVRN 133
L + ++ + N
Sbjct: 121 DLKRTNLSQITAN 133
>gi|291545758|emb|CBL18866.1| rrf2 family protein (putative transcriptional regulator)
[Ruminococcus sp. SR1/5]
Length = 137
Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ +DY +RV+ A+ + +S+I E I+ F +KIL+ L AG+VE RG
Sbjct: 1 MFITRESDYAMRVIR--ALMWEPRLSVSEICERESITAPFAYKILKKLQNAGLVEGYRGV 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS----CGLTSVLRKALN 116
GG L R +++++ ++ A + + EC + CP G C L++ +
Sbjct: 59 HGGYALKRDPEELSLYEIYSAIDPDMSIIECL-NGTYQCPRNGQDGVPCHAHDELQEIQD 117
Query: 117 AFFDVLTQYSIECL 130
+ +L + S++ L
Sbjct: 118 QLWTMLRRKSMKDL 131
>gi|262196471|ref|YP_003267680.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Haliangium ochraceum DSM 14365]
gi|262079818|gb|ACY15787.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
DSM 14365]
Length = 273
Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ D R A + +A A I E + K+L+ LV+AG+V +VRG GG
Sbjct: 77 TRAGDVAHR-----AGEGGTHQSVRALAAATGIPEPTVRKVLKTLVRAGVVGSVRGTHGG 131
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFFDVL 122
L RPA I++ +V A E V EC + C L C + ++ D L
Sbjct: 132 YALARPASAISVAEVATAFEGPIAVTECASEETVGTCGLEDRCTVKGPWQRISEVIRDAL 191
Query: 123 TQYSIECL 130
S+ +
Sbjct: 192 EGLSLAQM 199
>gi|116618835|ref|YP_819206.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097682|gb|ABJ62833.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 139
Score = 87.7 bits (216), Expect = 4e-16, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ +QIA++ + + + +I+ L G + + GR
Sbjct: 1 MKYSTKLSDAIHILTYIVINQGTDLSSTQIAKSVNSNPVVIRRIMSQLKNDGCLLSSNGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
+L RPAD I++LD+ +A EE + +C + T + A
Sbjct: 61 ADP-KLARPADTISLLDIYRAVEEDTSFLKIDTKTNQNCNVGSHIQTTLDKYYNQVQEAA 119
Query: 119 FDVLTQYSIECLVRN 133
+ + + +++
Sbjct: 120 EKEMNKIKLADIIKE 134
>gi|313205087|ref|YP_004043744.1| transcriptional regulator, badm/rrf2 family [Paludibacter
propionicigenes WB4]
gi|312444403|gb|ADQ80759.1| transcriptional regulator, BadM/Rrf2 family [Paludibacter
propionicigenes WB4]
Length = 147
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + YG+R ++ A D IA+ IS +L I+ L G++ +G
Sbjct: 1 MRINTKIRYGLRTMIEIASSTDANGMLQKDIAKNQNISLKYLDPIISSLKLKGLIVNSKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R G RL R IT+LD+ A E V EC + + C + + N F
Sbjct: 61 RGSGYRLTREPKDITMLDIYTAF-EQIIVIECINNLGYCDRSMHDCKGRNYWNEFKNEFA 119
Query: 120 DVLTQYSIECLVRN 133
++L ++E ++
Sbjct: 120 EMLRSKNLEQIIEE 133
>gi|255970632|ref|ZP_05421218.1| rrf2 family protein [Enterococcus faecalis T1]
gi|255974212|ref|ZP_05424798.1| rrf2 family protein [Enterococcus faecalis T2]
gi|256618068|ref|ZP_05474914.1| YwnA [Enterococcus faecalis ATCC 4200]
gi|256761007|ref|ZP_05501587.1| rrf2 family protein [Enterococcus faecalis T3]
gi|256958450|ref|ZP_05562621.1| YwnA [Enterococcus faecalis DS5]
gi|256960515|ref|ZP_05564686.1| YwnA [Enterococcus faecalis Merz96]
gi|256963008|ref|ZP_05567179.1| YwnA [Enterococcus faecalis HIP11704]
gi|257078238|ref|ZP_05572599.1| YwnA [Enterococcus faecalis JH1]
gi|257080433|ref|ZP_05574794.1| rrf2 family protein [Enterococcus faecalis E1Sol]
gi|257083155|ref|ZP_05577516.1| rrf2 family protein [Enterococcus faecalis Fly1]
gi|257088279|ref|ZP_05582640.1| YwnA [Enterococcus faecalis D6]
gi|257091410|ref|ZP_05585771.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257418014|ref|ZP_05595008.1| rrf2 family transcriptional regulator [Enterococcus faecalis T11]
gi|257420384|ref|ZP_05597374.1| conserved hypothetical protein [Enterococcus faecalis X98]
gi|255961650|gb|EET94126.1| rrf2 family protein [Enterococcus faecalis T1]
gi|255967084|gb|EET97706.1| rrf2 family protein [Enterococcus faecalis T2]
gi|256597595|gb|EEU16771.1| YwnA [Enterococcus faecalis ATCC 4200]
gi|256682258|gb|EEU21953.1| rrf2 family protein [Enterococcus faecalis T3]
gi|256948946|gb|EEU65578.1| YwnA [Enterococcus faecalis DS5]
gi|256951011|gb|EEU67643.1| YwnA [Enterococcus faecalis Merz96]
gi|256953504|gb|EEU70136.1| YwnA [Enterococcus faecalis HIP11704]
gi|256986268|gb|EEU73570.1| YwnA [Enterococcus faecalis JH1]
gi|256988463|gb|EEU75765.1| rrf2 family protein [Enterococcus faecalis E1Sol]
gi|256991185|gb|EEU78487.1| rrf2 family protein [Enterococcus faecalis Fly1]
gi|256996309|gb|EEU83611.1| YwnA [Enterococcus faecalis D6]
gi|257000222|gb|EEU86742.1| conserved hypothetical protein [Enterococcus faecalis CH188]
gi|257159842|gb|EEU89802.1| rrf2 family transcriptional regulator [Enterococcus faecalis T11]
gi|257162208|gb|EEU92168.1| conserved hypothetical protein [Enterococcus faecalis X98]
Length = 139
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ + I +L IA + + + + +++ L KAG++ ++RG
Sbjct: 1 MSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA-N 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
L + ++I++ ++ A E + + +C + + L + K +
Sbjct: 60 KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKMEE 119
Query: 121 VLTQYSIECLVRN 133
L ++ ++
Sbjct: 120 ELKSITLADVIHE 132
>gi|223040640|ref|ZP_03610910.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus
RM3267]
gi|222878098|gb|EEF13209.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter rectus
RM3267]
Length = 134
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK ++Y + L+Y A D P+ + ++ IS+ FL KILQ L + GI+ + +G
Sbjct: 1 MLLTKASEYALLSLIYIA-QKDAPSDVDTMSGELEISKSFLAKILQNLAREGILISFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + I+I V++ A + V EC + C + + +
Sbjct: 60 NGGFMLAQKPGDISIKRVIESAEKRKMAVFECSISQEGCSSSKNRMCQIWPMFSALQSRI 119
Query: 119 FDVLTQYSIECLVRN 133
D L ++ +++
Sbjct: 120 DDFLDTITLANIMKK 134
>gi|77165193|ref|YP_343718.1| hypothetical protein Noc_1716 [Nitrosococcus oceani ATCC 19707]
gi|254434008|ref|ZP_05047516.1| rrf2 family protein (putative transcriptional regulator)
[Nitrosococcus oceani AFC27]
gi|76883507|gb|ABA58188.1| transcriptional regulator, BadM/Rrf2 family [Nitrosococcus oceani
ATCC 19707]
gi|207090341|gb|EDZ67612.1| rrf2 family protein (putative transcriptional regulator)
[Nitrosococcus oceani AFC27]
Length = 141
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 12/137 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R Y I +M A+ + IA+ IS +L +I L G+VE +RG
Sbjct: 1 MRFSNRPRYAISAMMNLALVKQQKSITLGDIAQLDNISVSYLEQIFASLRHHGLVEGIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKAT---EESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
GG L R A++ITI +++ A + + +
Sbjct: 61 PGGGYHLTRAAEKITIAEIIAAVDKQPGKLNPLAIATNSVSEAER--------LWHDFSM 112
Query: 117 AFFDVLTQYSIECLVRN 133
+D L Q ++ L R
Sbjct: 113 RLYDFLNQITLADLARR 129
>gi|331090359|ref|ZP_08339241.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330401244|gb|EGG80834.1| hypothetical protein HMPREF1025_02824 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 141
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TDY +R++ + + + + +I+EA S ++ IL+ L K G+VE +RG
Sbjct: 1 MQLNRTTDYVVRIVYFLS-NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVIRGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
+GG RL + D I++ DV+K E++ + +C + + +C L + C +
Sbjct: 60 KGGFRLKKRPDAISLFDVIKIMEDTICINQCL-NEEENCNLKATDYCPVRRFYLSLQEQI 118
Query: 119 FDVLTQYSIECL 130
L + E L
Sbjct: 119 ESELKHMTFEML 130
>gi|294793415|ref|ZP_06758560.1| Rrf2 family protein [Veillonella sp. 6_1_27]
gi|294455846|gb|EFG24211.1| Rrf2 family protein [Veillonella sp. 6_1_27]
Length = 143
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKVTGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
GG L R +I++LDV++A E ++ C S C G C + + +
Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--KGHCAINEAMGVIQH 118
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
+ L + + L + + I
Sbjct: 119 QLINQLEAVNFKTLAQRKQLI 139
>gi|186683299|ref|YP_001866495.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186465751|gb|ACC81552.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
73102]
Length = 145
Score = 87.7 bits (216), Expect = 5e-16, Method: Composition-based stats.
Identities = 39/142 (27%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L + +Y + ++ + N P +I QIAE I +L ++L L G++ ++R
Sbjct: 1 MRLPNKFEYSLLAMLALVDSYQNGDPMQIKQIAELKGIQNRYLEQLLATLRCQGLINSIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNA 117
G +GG L R +IT+LDV+ A E E A + S + V ++A A
Sbjct: 61 GAKGGYILARDPRKITVLDVLTAIEG----VEIDAPANNTTIDTMESSIVEEVWQEACQA 116
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
V ++S++ L RS ++
Sbjct: 117 ANFVFQKHSLQDLWERRSKRQQ 138
>gi|238060932|ref|ZP_04605641.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
39149]
gi|237882743|gb|EEP71571.1| BadM/Rrf2 family transcriptional regulator [Micromonospora sp. ATCC
39149]
Length = 166
Score = 87.7 bits (216), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/152 (25%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 1 MHLTKRTDYGIRVLM-----------------YCAIHNDYPNRISQIAEACCISELFLFK 43
M+++ R+DY +R ++ + + + +AE+ I FL
Sbjct: 1 MYVSARSDYALRAMLAVAVAAADGGGTTGDLGHAPAPGGELVKAAALAESQAIPLSFLQG 60
Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
IL L +AG++ + RG GG L RPAD+I++ DV++A S + V
Sbjct: 61 ILLDLRRAGLLLSHRGAEGGYALTRPADEISVGDVLRAVGGSLTSVRGLPAEIAGYHGVA 120
Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
+ GL V A V+ + S+ L+ +S
Sbjct: 121 T-GLRDVWLAVDGAIATVVDRTSLADLLAAKS 151
>gi|23500834|ref|NP_700274.1| RrF2 family protein [Brucella suis 1330]
Length = 131
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+++ A + + S+IAE I FL I L AG V + +G+ GG L PA +
Sbjct: 1 MVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLTHPASE 60
Query: 73 ITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
I I ++++A + + C + DC C + V+ A +VL ++
Sbjct: 61 IAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREAIANVLDHRTLA 119
Query: 129 C 129
Sbjct: 120 D 120
>gi|77918499|ref|YP_356314.1| transcriptional regulator [Pelobacter carbinolicus DSM 2380]
gi|77544582|gb|ABA88144.1| transcriptional regulator, BadM/Rrf2 family [Pelobacter
carbinolicus DSM 2380]
Length = 132
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+T+ DY IR +++ + +P + +++ I FL KIL L+ A +V + RGR
Sbjct: 2 ITREADYCIRTILHLSRPEQRKHPVPVDELSRQMTIPAPFLRKILAKLINADLVHSHRGR 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+ + +QI++L++++ + + + C G+C + ++K N +
Sbjct: 62 NGGLTIKGEPEQISLLEILQVADGKGLLLNQCLESEGVCTHQGTCTVHDAMKKLQNVMEN 121
Query: 121 VLTQYSIECLV 131
L + + L+
Sbjct: 122 HLKAITFDQLI 132
>gi|76666808|emb|CAJ31186.1| Transcriptional regulator [uncultured sulfate-reducing bacterium]
Length = 182
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L+ R Y +R+++ A H ++ +SQ++ IS +L +++ L A ++
Sbjct: 22 MKLSTRARYALRLMVTLARHTNGDNSVVSLSQVSREAKISRRYLEQLVIGLKNASLIRGR 81
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
G+ GG L PADQI I ++++ + EC +I C C + +
Sbjct: 82 SGKGGGYCLALPADQIRIRQIIESAIGPINIVECVMQPEI-CLKSDLCECRMLYQLINQR 140
Query: 118 FFDVLTQYSIECLV 131
VL + L
Sbjct: 141 ITGVLDGLVLSDLA 154
>gi|325679872|ref|ZP_08159441.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
gi|324108310|gb|EGC02557.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
Length = 150
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + ++GI L AI++ S I+ IS+ +L +IL L +AG + +
Sbjct: 1 MKISTKVEFGIVALADIAIYSVNGETVSSSDISSRQNISQKYLEQILVALRQAGFIRGQK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG L RPA +I+ +++ + + + D L + + K
Sbjct: 61 GSRGGYTLARPASEISFSEILNGLDNNILADTYVSEDDTDGGLRDK-VNSCIWDKLNGYM 119
Query: 119 FDVLTQYSIECLVR 132
+ + ++ +
Sbjct: 120 REFTAKMTLADFIE 133
>gi|291010047|ref|ZP_06568020.1| transcriptional regulator Rrf2 family protein, putative
[Saccharopolyspora erythraea NRRL 2338]
Length = 147
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+ R+ I L A + ++IA++ + + + +IL L A +V + GR G
Sbjct: 4 LSSRSAVAIHALAMLAHRREGSLTSAEIADSLGSNPVLVRRILGRLRNAELVWSTEGRGG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L R IT+ D A EE + C + + G L + A A +
Sbjct: 64 GWSLARAPRDITLYDAYAAVEEGQIFSRHTHPPSGVCEVGRNIGELLDIEFQSAERALEE 123
Query: 121 VLTQYSIECLVRN 133
L + +I L++
Sbjct: 124 QLGRTTIAGLLQQ 136
>gi|319442413|ref|ZP_07991569.1| Rrf2 family transcriptional regulator [Corynebacterium variabile
DSM 44702]
Length = 159
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYC-------AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
MHLTK D G+R LM A + ++A + K++ L G+
Sbjct: 1 MHLTKFADLGLRSLMILGDTGAAGATDPSQRRTVGELAVQTAAPASHVKKVVARLTGLGV 60
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLR 112
+ +VRGR GGV L A I +++ E V +C + CPL C L +L
Sbjct: 61 LASVRGRSGGVYLADGARDTDIGRLLRELEGRHEVVDC--EGEAPCPLAARDCSLRHLLA 118
Query: 113 KALNAFFDVLTQYSIECLVRN 133
+A FF ++ L+
Sbjct: 119 QAQENFFATFDGMTLGELIER 139
>gi|307720334|ref|YP_003891474.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
autotrophica DSM 16294]
gi|306978427|gb|ADN08462.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
autotrophica DSM 16294]
Length = 137
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K Y IR+L Y A H D ++++E I FL KI+ +VK+G+V ++RG
Sbjct: 1 MQLSKSAQYAIRILAYMADHKDSKLLNATELSETLLIPYKFLTKIMTEVVKSGLVVSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG +P +I + +++ +S +C C + C L + +
Sbjct: 61 RDGGYSFAKPPSEIMVSEILDIFHDSIKDEQCVLGIGF-CNGMCKCALHDQWMEPKHLMQ 119
Query: 120 DVLTQYSIECLV 131
+ + ++E +
Sbjct: 120 KMFQESTLEEIA 131
>gi|220910380|ref|YP_002485691.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
7425]
gi|219866991|gb|ACL47330.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7425]
Length = 145
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y + ++ A + P +I QIA I + +L ++L L + G++ + R
Sbjct: 1 MELSCKSEYALLAMLELADAYKRNEPLQIRQIAALHSIPDRYLEQLLATLRRCGLIRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R QIT+L+V++ E + + + + ++A A
Sbjct: 61 GAKGGYLLAREPWQITLLEVMECIEG---LETRPTDKSLSTETIERAVVRESWQEACQAA 117
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
VL + S++ L R + +++
Sbjct: 118 HSVLQRCSLKDLCDRRDTKRQL 139
>gi|330720575|gb|EGG98846.1| Iron-sulfur cluster regulator IscR [gamma proteobacterium IMCC2047]
Length = 130
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
S I+ IS +L ++ L + +V +VRG GG +L R +QI + ++V A ES
Sbjct: 2 SDISSRQDISLSYLEQLFSKLRRRELVTSVRGPGGGYQLARELEQICVAEIVDAVNESVD 61
Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
C +C +C ++ L+ S+ LV R
Sbjct: 62 ATLCNGD--NNCQHGHACLTHNLWDDLSKQIHSFLSSISLRDLVDRRE 107
>gi|294782303|ref|ZP_06747629.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
gi|294480944|gb|EFG28719.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
Length = 140
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I +C + L+K +
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDELL 120
Query: 120 DVLTQYSIECLVRNRSSI 137
D + + LV + +
Sbjct: 121 DDFDKINFHDLVEENTGL 138
>gi|269793340|ref|YP_003318244.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100975|gb|ACZ19962.1| transcriptional regulator, BadM/Rrf2 family [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 142
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 1/135 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ T + + + ++A SE L K++Q L +AGI+ + G
Sbjct: 6 RFSEATSIALHACLLLSAPGAGRMTSGELASRIGASEAHLSKVVQHLTRAGILRSKSGPG 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GGV L ++ +LDV +A E C + CP G C ++ + + D
Sbjct: 66 GGVELAADPSRLKLLDVYEAMEGKSSKGGCPLGKGL-CPFGGRCLFGGLMGRVEDQVLDF 124
Query: 122 LTQYSIECLVRNRSS 136
L + ++ +
Sbjct: 125 LARTTLGDFWKGERQ 139
>gi|209966309|ref|YP_002299224.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
gi|209959775|gb|ACJ00412.1| rrf2 family protein (putative transcriptional regulator)
[Rhodospirillum centenum SW]
Length = 151
Score = 87.3 bits (215), Expect = 6e-16, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 60/132 (45%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ L+K+ + I ++ A + P + ++I I + +L ++LQ LV+AG++ VRG
Sbjct: 2 LRLSKKLVFAIETVLDIAYNAGSAPVQSAEITARQGIPKRYLEQVLQALVRAGVLAGVRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG RL + +IT+ ++V+ + +G + + +
Sbjct: 62 PRGGYRLAKERRRITVGEIVRVVRSLEQATDPIEEPAGS--ELGMRVVRPLWAELQEEVM 119
Query: 120 DVLTQYSIECLV 131
L + SIE L
Sbjct: 120 QRLDRTSIEDLC 131
>gi|251799818|ref|YP_003014549.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247547444|gb|ACT04463.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 141
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L+Y A + IA+ + K++ L K+G V+T G G
Sbjct: 1 MNSEFTIAVHSLVYLAYLPERMASSEMIADNVGTHSARVRKVMSGLRKSGFVDTREGAGG 60
Query: 63 GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G RL D +T+ DV + + SF + C +DC + + + + A
Sbjct: 61 GYRLTIDPDVVTLGDVYRVMAQGSFIPSWCSGDPGMDCVVGSNMNQVMFGIFCTAEKQLE 120
Query: 120 DVLTQYSIECLVRN 133
+ +I +++
Sbjct: 121 GYFSGITISDVLKQ 134
>gi|313638249|gb|EFS03485.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
Length = 141
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +I+ L KA ++ + G
Sbjct: 1 MAISTRFSVAVHILTLIDMNQERSITSDFIAASVNTNPVVIRRIMSKLKKARLIHSSPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G L + A +IT+ D+ A + + + + + +C + + L +V A
Sbjct: 61 -SGTYLLKEASEITLYDIYAAVDGTEQLFDIHKNPNPNCEVGANIQVTLDTVFNHAQQQM 119
Query: 119 FDVLTQYSIECLVRN 133
L Q ++ + N
Sbjct: 120 EADLKQTNLSQITAN 134
>gi|332524348|ref|ZP_08400568.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
benzoatilyticus JA2]
gi|332107677|gb|EGJ08901.1| BadM/Rrf2 family transcriptional regulator [Rubrivivax
benzoatilyticus JA2]
Length = 166
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 57/137 (41%), Gaps = 13/137 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ RT + + L+ + P ++ I +S ++ ++ L + G+VE+ RG
Sbjct: 1 MRMSTRTRFAVNALVDLGLRQQAGPVALAAICGRLQVSLSYMEQVFARLRRQGLVESTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R AD ITI DVV A E+ A ++ +
Sbjct: 61 PGGGYTLGRRADAITIADVVSAVEDRPAPAAEVTPG------------QALWSELDAVMM 108
Query: 120 DVLTQYSIECLVRNRSS 136
++ ++E L+ + +
Sbjct: 109 QHMSGITLESLLEEQRA 125
>gi|153815582|ref|ZP_01968250.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756]
gi|317502129|ref|ZP_07960308.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium
8_1_57FAA]
gi|145847013|gb|EDK23931.1| hypothetical protein RUMTOR_01818 [Ruminococcus torques ATCC 27756]
gi|316896474|gb|EFV18566.1| hypothetical protein HMPREF1026_02252 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 140
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + TDY +R++ + + + + +I+EA S ++ IL+ L K G+VE +RG
Sbjct: 1 MQLNRTTDYVVRIVYFLS-NENRIFTSEEISEAIGCSRGYVISILRKLSKEGLVEVIRGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
+GG RL + D I++ DV+K E++ + +C + + +C L + C +
Sbjct: 60 KGGFRLKKRPDAISLFDVIKIMEDTICINQCL-NEEENCNLKATDYCPVRRFYLSLQEQI 118
Query: 119 FDVLTQYSIECL 130
L + E L
Sbjct: 119 ESELKHMTFEML 130
>gi|83269916|ref|YP_419207.1| hypothetical protein BAB2_1077 [Brucella melitensis biovar Abortus
2308]
gi|256015879|ref|YP_003105888.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915]
gi|82940190|emb|CAJ13243.1| Protein of unknown function UPF0074 [Brucella melitensis biovar
Abortus 2308]
gi|255998539|gb|ACU50226.1| transcriptional regulator, RrF2 family [Brucella microti CCM 4915]
Length = 131
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 6/121 (4%)
Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+++ A + + S+IAE I FL I L AG V + +G+ GG L PA +
Sbjct: 1 MVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKGGGFCLAHPASE 60
Query: 73 ITILDVVKATEESFFVAECFAS----HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
I I ++++A + + C + DC C + V+ A +VL ++
Sbjct: 61 IAIGNIIRALDGALAPIACASKTDYRPCEDCN-EAECQVRHVMLDVREAIANVLDHRTLA 119
Query: 129 C 129
Sbjct: 120 D 120
>gi|323485653|ref|ZP_08090991.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum
WAL-14163]
gi|323691728|ref|ZP_08105988.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum
WAL-14673]
gi|323401003|gb|EGA93363.1| hypothetical protein HMPREF9474_02742 [Clostridium symbiosum
WAL-14163]
gi|323504206|gb|EGB20008.1| hypothetical protein HMPREF9475_00850 [Clostridium symbiosum
WAL-14673]
Length = 138
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +R+L + + ++AE + + F +KIL+ L KAGIV+ RG
Sbjct: 1 MLITRETDYALRILRTLS--DGKSYTAGELAERESLPQKFAYKILKKLEKAGIVQITRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALNA 117
GG RL T+ +++A E + + C C + + L K NA
Sbjct: 59 SGGCRLGCDLRTATLYQLIEAVETNARLTSCMTPGYQCEWRGRYGSPCTIHTQLAKVQNA 118
Query: 118 FFDVLTQYSI 127
S+
Sbjct: 119 IDQEFRSRSL 128
>gi|303228847|ref|ZP_07315660.1| transcriptional regulator, Rrf2 family [Veillonella atypica
ACS-134-V-Col7a]
gi|303230326|ref|ZP_07317089.1| transcriptional regulator, Rrf2 family [Veillonella atypica
ACS-049-V-Sch6]
gi|302515012|gb|EFL56991.1| transcriptional regulator, Rrf2 family [Veillonella atypica
ACS-049-V-Sch6]
gi|302516467|gb|EFL58396.1| transcriptional regulator, Rrf2 family [Veillonella atypica
ACS-134-V-Col7a]
Length = 150
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 2/145 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A + + +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMILHMAMLPSGQKVTGGVLAEQEMIPERFLLKIMRSLIAAGIMKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
GG L R I++LDV++A E ++ C +G C + +
Sbjct: 61 VDGGFALNREPKDISMLDVIRAVEGDTYLQRCLYDVGSCSKACMGQCAVNEAMSVVQAEL 120
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
+ + + L I + N
Sbjct: 121 VRQMESVTFDKLAVREKEILETMNP 145
>gi|86742682|ref|YP_483082.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
gi|86569544|gb|ABD13353.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
Length = 177
Score = 87.3 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 43/138 (31%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ ++ + A D + Q+A + +L K LQ L KAG+V +V G
Sbjct: 1 MRLSQGIEWALHCCHALAEAPDGSSLPVQQLAALHGGNPAYLAKHLQALSKAGVVVSVLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL RPADQI +LDVV A E S V C + C + + +
Sbjct: 61 PRGGYRLGRPADQIRLLDVVDAIEGSSPVFLCTEIRQRGPAALPPANYRAPCAIAAAVSS 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A +A+ L +I +V
Sbjct: 121 AEDAWRQALASTTIADIV 138
>gi|295402097|ref|ZP_06812057.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|312109802|ref|YP_003988118.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacillus sp. Y4.1MC1]
gi|294975879|gb|EFG51497.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus
thermoglucosidasius C56-YS93]
gi|311214903|gb|ADP73507.1| transcriptional regulator, BadM/Rrf2 family [Geobacillus sp.
Y4.1MC1]
Length = 136
Score = 86.9 bits (214), Expect = 7e-16, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + Y A + IA++ + L KIL L K I+ + G +GG L P
Sbjct: 8 AVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFTLNDP 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSI 127
+ IT+ + K T E V +C +CP+ S L V A F + L +I
Sbjct: 68 PEHITLDKIFKITSEETLVPKC-PDSNENCPIGRNLSNILIRVCHNAEQHFLNYLKGVTI 126
Query: 128 ECLVRN 133
+ ++
Sbjct: 127 KDIIDE 132
>gi|149177719|ref|ZP_01856319.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797]
gi|148843369|gb|EDL57732.1| hypothetical protein PM8797T_08639 [Planctomyces maris DSM 8797]
Length = 157
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 2/129 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ +Y +R +++ A P QIA+A + + +L K+LQ L ++ +V + RG G
Sbjct: 2 FSQTVEYALRAIVHLADQAPNPCTTEQIAKATKVPQAYLSKVLQSLRQSSVVHSQRGIGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+ L + +++++L+VV A + + C K C L L A+
Sbjct: 62 GISLVKTPEELSLLEVVNAVDPICRIKTCPLGLKG--HGANLCPLHRKLDDAMRETETAF 119
Query: 123 TQYSIECLV 131
+ ++ ++
Sbjct: 120 AETTLAQIL 128
>gi|260061024|ref|YP_003194104.1| hypothetical protein RB2501_05485 [Robiginitalea biformata
HTCC2501]
gi|88785156|gb|EAR16325.1| hypothetical protein RB2501_05485 [Robiginitalea biformata
HTCC2501]
Length = 143
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++K Y I+ ++Y +H+ P +I + E +SE +L KILQ L + I+ +++GR
Sbjct: 2 ISKTAKYAIKAVIYLGLHSSEPKKILTRDMYEQIHVSESYLAKILQVLSRHNIISSIKGR 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L T++D+V+ + +V C +C C L ++ K F
Sbjct: 62 NGGFYLSEENKNHTLMDIVRVVDGGQYVESCVLG-ISNCNSENPCALHDLVGKGKTEFNR 120
Query: 121 VLTQYSIECLVR 132
VL + +I+ L+
Sbjct: 121 VLEEVTIKKLIA 132
>gi|298248163|ref|ZP_06971968.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297550822|gb|EFH84688.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 135
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ T+Y + +MY A+ + ++AE +S +L KIL LVKAGI+E+ G
Sbjct: 1 MKYSQATNYALHTMMYFVALPVGSTIGVQRLAELQKLSPTYLSKILTKLVKAGIIESTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL R ++ L+V+ A E + + D C + V+ +A
Sbjct: 61 VNGGYRLTRNKADLSFLEVIHAIEGTATLFH-------DGLHHHECLIQDVMTQAEQQME 113
Query: 120 DVLTQYSIECLV 131
D L + + LV
Sbjct: 114 DYLKERKLIELV 125
>gi|251788573|ref|YP_003003294.1| BadM/Rrf2 family transcriptional regulator [Dickeya zeae Ech1591]
gi|247537194|gb|ACT05815.1| transcriptional regulator, BadM/Rrf2 family [Dickeya zeae Ech1591]
Length = 148
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L A+ + P R +IA + S + + +L L KAG+ ++ G
Sbjct: 1 MPMSTRFVVAVHILTGFAVSDGKPMRSEEIAYSVNTSAVVIRGLLARLGKAGLTKSQLGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L + A I++LDV + E++ + +C + + + +L +A A
Sbjct: 61 GGGTMLAKHAANISLLDVYETVEDTALFSLHRTPPCENCAVGSNILDAIHPILTRAREAL 120
Query: 119 FDVLTQYSIECL 130
L + +I +
Sbjct: 121 EQELAKTTIADV 132
>gi|29827903|ref|NP_822537.1| transcriptional regulator [Streptomyces avermitilis MA-4680]
gi|29605004|dbj|BAC69072.1| putative transcriptional regulator [Streptomyces avermitilis
MA-4680]
Length = 160
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ ++ + + + P +++AE +S +L K LQ L +AG+V +V+G+
Sbjct: 1 MKMSGGVEWALHCCVVL-TSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R IT+LDVV+A + C A+ C + C + +
Sbjct: 60 AGGYVLTREPASITVLDVVEAVDGPDQAFTCTEIRQRGPLATPAESCAV--PCAIARAMT 117
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A A+ L SI LV+N
Sbjct: 118 GADAAWRAALRAVSIADLVQN 138
>gi|56551012|ref|YP_161851.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241761404|ref|ZP_04759492.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|56542586|gb|AAV88740.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374311|gb|EER63808.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 145
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ T Y + L ++ IAE I +L KIL L +AG++ RG+ G
Sbjct: 4 ISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+RL RP + I++L++VKA + + CF C C + S K L
Sbjct: 64 GLRLNRPPETISLLEIVKAIDGKDWGCGCFLGL-PGCSNEHPCPMHSFWLKTRPVIVKQL 122
Query: 123 TQYSIE 128
+++
Sbjct: 123 ENMTLD 128
>gi|117926693|ref|YP_867310.1| BadM/Rrf2 family transcriptional regulator [Magnetococcus sp. MC-1]
gi|117610449|gb|ABK45904.1| transcriptional regulator, BadM/Rrf2 family [Magnetococcus sp.
MC-1]
Length = 153
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ +K+ Y I ++ A + P +I ++ + + +L +++Q LVKAGI++ +RG
Sbjct: 2 LKFSKKLLYAIEAVVDIAYNSGGEPVQIREVTSRQGVPQRYLEQVMQRLVKAGILKGIRG 61
Query: 60 RRGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + +I++ D+ + A E S P+ + + V +
Sbjct: 62 PKGGYLLAKERSKISVGDIARVAMELGDEGNNGLPSDVATGPIGTA-VIRPVWGEFQEEI 120
Query: 119 FDVLTQYSIECLVRN 133
++ + S+E L
Sbjct: 121 LVMMDKVSVEDLTNR 135
>gi|288957208|ref|YP_003447549.1| transcriptional regulator [Azospirillum sp. B510]
gi|288909516|dbj|BAI71005.1| transcriptional regulator [Azospirillum sp. B510]
Length = 151
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++K+ + I ++ A + P + +I I + +L ++LQ LV+ G++ VRG
Sbjct: 2 LRISKKLMFAIEAVLDIAYNAGTEPVQSGEITRRQGIPKRYLEQVLQQLVREGVLAGVRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG RL R +IT+ ++VK + ++G + + + +
Sbjct: 62 PRGGYRLARERRRITLGEIVKVVRAMETATDPIEEPAGS--VLGHQVVRPLWGELQDECM 119
Query: 120 DVLTQYSIECLVRNRS 135
L +IE L
Sbjct: 120 AKLDTITIEDLCMRAR 135
>gi|119491073|ref|ZP_01623231.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106]
gi|119453618|gb|EAW34778.1| hypothetical protein L8106_26187 [Lyngbya sp. PCC 8106]
Length = 144
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ ++ Y + L+ H + P +I QIA I E +L ++L L ++GIV + R
Sbjct: 1 MELSCKSQYAVLALLELTAHYPHGEPRQIRQIARQHHIPERYLEQLLATLKRSGIVRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L + +IT+ DVV E S + + S + V +A
Sbjct: 61 GAKGGYLLAKEPWKITLFDVVVCLEGSNS----SPNRNRHHKSLESLIVDEVWEEAHQMA 116
Query: 119 FDVLTQYSIECLVRN 133
+L +Y+++ L
Sbjct: 117 NSILQKYTLQDLCEK 131
>gi|218441057|ref|YP_002379386.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Cyanothece sp. PCC 7424]
gi|218173785|gb|ACK72518.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7424]
Length = 151
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 62/136 (45%), Gaps = 7/136 (5%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L + +Y + L+ A + +P +++I I E +L +IL L + G++++ RG
Sbjct: 11 LPSKVEYALLALLEMASQSHLKHPLTVNEITAKQPIPERYLEQILATLRRGGLLKSQRGS 70
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L R IT+L++V E + V D V + +A A
Sbjct: 71 KGGYVLAREPQDITLLEIVSIIEGNRQV-----KENTDLSTVEMKLIQDSWHQANQAAQS 125
Query: 121 VLTQYSIECLVRNRSS 136
+L QY++ L + R S
Sbjct: 126 ILEQYTLLDLCKQRES 141
>gi|294795234|ref|ZP_06760368.1| Rrf2 family protein [Veillonella sp. 3_1_44]
gi|294454026|gb|EFG22401.1| Rrf2 family protein [Veillonella sp. 3_1_44]
Length = 143
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEHELIPERFLLKIMRSLIAAGIMKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
GG L R +I++LDV++A E ++ C S C G C + + +
Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--KGHCAINEAMGVIQH 118
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
+ L + + LV+ I
Sbjct: 119 QLVNQLEAVNFKNLVQREQLI 139
>gi|253576663|ref|ZP_04853990.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843873|gb|EES71894.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 145
Score = 86.9 bits (214), Expect = 8e-16, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R I +L I D IA + + + + +I+ L KAG+VE G
Sbjct: 1 MTISSRFSVAIHILSLLEISKDEICTSEYIAGSVNTNPVVIRRIMGMLSKAGLVEVRTGV 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
G +L R DQIT+LDV +A E + DC + + + + KA
Sbjct: 61 -AGAKLSRQLDQITLLDVYRAVHVVEEDGLFAVHDQTNPDCLVGKNIQAAIEPIFSKAQK 119
Query: 117 AFFDVLTQYSIECLVRN 133
A + L +++ +V
Sbjct: 120 AMENTLAAVTLQDVVNE 136
>gi|315649061|ref|ZP_07902154.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
gi|315275496|gb|EFU38851.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
Length = 148
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE G
Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGISTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
G +L + +IT+LD+ A + + + CP+ V A
Sbjct: 61 -AGAKLAKHPAEITLLDIYHAVHVVQEDSLFSIHENSDTKCPVGKHIQTAIVPVFSAAQK 119
Query: 117 AFFDVLTQYSIECLVRN 133
A + L + S+E ++RN
Sbjct: 120 AMENTLHEVSLEEIIRN 136
>gi|56419543|ref|YP_146861.1| hypothetical protein GK1008 [Geobacillus kaustophilus HTA426]
gi|56379385|dbj|BAD75293.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 136
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + Y A + IA++ + L KIL L K I+ + G +GG L P
Sbjct: 8 AVHCVAYLAKKQNQRVTSEDIAQSVSVHPARLRKILSILRKENIITSKEGAKGGFSLNDP 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSI 127
+ IT+ + K T E V +C +CP+ S L V A F + L +I
Sbjct: 68 PEHITLDKIFKITSEETLVPKC-PDSNENCPIGRNLSDILIRVCHNAEQHFLNYLKGVTI 126
Query: 128 ECLVRN 133
+ ++
Sbjct: 127 KDIIDE 132
>gi|304437884|ref|ZP_07397831.1| Rrf2 family transcriptional regulator [Selenomonas sp. oral taxon
149 str. 67H29BP]
gi|304369106|gb|EFM22784.1| Rrf2 family transcriptional regulator [Selenomonas sp. oral taxon
149 str. 67H29BP]
Length = 156
Score = 86.9 bits (214), Expect = 9e-16, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 54/141 (38%), Gaps = 5/141 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L+ + P ++ + + + +IL L +AG++ RG
Sbjct: 12 MQISSRFTIAVHILICVDLFGKREPATSESLSGSIGAHPVVIRRILGQLRRAGLITVARG 71
Query: 60 RRGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
R GG + + IT+ D+ A E + + CP+ L L
Sbjct: 72 REGGAHIAKELTDITLADIFCAVESISGQSLFSFHENPNPACPVGSHIHDVLDHRLADIQ 131
Query: 116 NAFFDVLTQYSIECLVRNRSS 136
+A + + ++ +++
Sbjct: 132 HAMEKKMEETTLADIIKEARE 152
>gi|237740621|ref|ZP_04571102.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
gi|229422638|gb|EEO37685.1| conserved hypothetical protein [Fusobacterium sp. 2_1_31]
Length = 140
Score = 86.9 bits (214), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 1/138 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + Y ++++ Y +H D ++I+ I LF +I++ L KAG+V+ RG
Sbjct: 1 MKIKNEVRYALQIVYYLTLHRDKDIISSNEISAEENIPRLFCLRIIKKLEKAGVVKIFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L R ++T D+++ ++ + C S I +C + L+K +
Sbjct: 61 AKGGYVLTRDPKRLTFRDIIEIIDDDIVLQPCIDSSTICSTRGANCSIRLALKKIQDELL 120
Query: 120 DVLTQYSIECLVRNRSSI 137
D + + LV + +
Sbjct: 121 DDFDKINFHDLVEKNTGL 138
>gi|238760769|ref|ZP_04621882.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC
35236]
gi|238701015|gb|EEP93619.1| Transcriptional regulator, BadM/Rrf2 family [Yersinia aldovae ATCC
35236]
Length = 169
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 4 TKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ +YGI L+ +D + ++A+ + +L KI L AG+V + G+
Sbjct: 5 SSGVEYGIHSLVCMVDINGDDREMNVREMADLQGVPYDYLAKIFTRLSHAGLVVSSEGKG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC---------FASHKIDCPLVGSCGLTSVLR 112
GG RL RP+ IT+LDV++A + + +C F G CG+ +V+
Sbjct: 65 GGFRLARPSALITMLDVIQAVDGQKGIFKCKEIRQRLAIFEEKLPAWVCDGPCGIRAVMD 124
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L +++I L R
Sbjct: 125 SAQQRMEEELARHTILDLARK 145
>gi|255658792|ref|ZP_05404201.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
gi|260849190|gb|EEX69197.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
Length = 148
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+ + Y A + P I I+E IS+++L ++ L +A +V +++
Sbjct: 1 MKISAKGRYGLAAMTYLARNYAAGTPITIVSISEKLGISKIYLEQVFSLLKRARLVNSIK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNA 117
G +GG +L RP +IT D++ + + E A + P + + V A
Sbjct: 61 GSQGGYQLARPPREITPYDILSSI--ELSLMEKTAPAAQEKMPELDRALASCVFTPLDEA 118
Query: 118 FFDVLTQYSIECLV 131
L+ S++ ++
Sbjct: 119 IQKALSAISLDDIL 132
>gi|282849988|ref|ZP_06259370.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
gi|282580177|gb|EFB85578.1| Rrf2 family protein [Veillonella parvula ATCC 17745]
Length = 143
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 68/141 (48%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
GG L R +I++LDV++A E ++ C S C G C + + +
Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--KGHCAINEAMGVIQH 118
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
+ L + + L + I
Sbjct: 119 QLINQLEAVNFKTLAQREQLI 139
>gi|260753319|ref|YP_003226212.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552682|gb|ACV75628.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 145
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ T Y + L ++ IAE I +L KIL L +AG++ RG+ G
Sbjct: 4 ISQSTGYAVLALSAIHAESEKLTMARDIAEKANIPRPYLTKILGRLQEAGLITAKRGQNG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+RL RP + I++L++VKA + + CF C C + S K L
Sbjct: 64 GLRLNRPPETISLLEIVKAIDGKDWGCGCFLGL-PGCSNEHPCQMHSFWLKTRPVIVKQL 122
Query: 123 TQYSIE 128
+++
Sbjct: 123 ENMTLD 128
>gi|331084569|ref|ZP_08333668.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401000|gb|EGG80597.1| hypothetical protein HMPREF0992_02592 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 141
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR ++Y ++I+ I +L K+L L KA + + G
Sbjct: 1 MQLNVTTDYAIRTVLYLG-QCKKLASATEISNEMKIPRGYLEKVLSKLKKAEYISSDLGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
RGG RL ++IT+ DV++ E + + C C C + K
Sbjct: 60 RGGYRLNMTLEEITLGDVIRLMENATKINRCLEEDMF-CNRKAVDYCAVRRYYEKVQKKL 118
Query: 119 FDVLTQYSIECLVR 132
+ S++ ++
Sbjct: 119 ENHFFTISLKEILE 132
>gi|307297855|ref|ZP_07577661.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales
bacterium mesG1.Ag.4.2]
gi|306917115|gb|EFN47497.1| transcriptional regulator, BadM/Rrf2 family [Thermotogales
bacterium mesG1.Ag.4.2]
Length = 154
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M T ++ Y +R L A + +I + I FL KI L +AGI++ V
Sbjct: 1 MGFTLKSSYALRALYKMAKSTREGKDKLSLVEIVQGNEIPRDFLEKIFGELRQAGIIKAV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RGR GG L RPA++I + DV+ ++ C + C +C + V K NA
Sbjct: 61 RGRYGGYCLARPANEILLRDVILKLDKPMNSYPCLQQNGK-CLEDPNCTVKYVWFKLYNA 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
L ++E L+ I +
Sbjct: 120 MMRELGSMTLENLLEYGDKIAQ 141
>gi|331092088|ref|ZP_08340919.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330402289|gb|EGG81860.1| hypothetical protein HMPREF9477_01562 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 132
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TDYGIR+++Y I N+ + ++E I + ++ K+ + L A IV +G
Sbjct: 1 MQLSVTTDYGIRIVLYL-IKNNEVTSSAILSEKLDIPKTYVLKVTKKLEAANIVACYQGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFF 119
GGV L ++I++ DVV ATE + + +C + +C + V A
Sbjct: 60 NGGVNLLPRPEEISLWDVVIATETTTAINKCLDTDGCCNRHAEDTCKVREVYLVLQKAVE 119
Query: 120 DVLTQYSIECLVR 132
+ + + L
Sbjct: 120 ERMQNIKLIDLAE 132
>gi|149179559|ref|ZP_01858095.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797]
gi|148841602|gb|EDL56029.1| hypothetical protein PM8797T_10319 [Planctomyces maris DSM 8797]
Length = 141
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 3/138 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+K +Y +R + A P +AE + +L ++LQ L +GIV + G +G
Sbjct: 2 LSKTHEYALRAVACLAGQPGKPASADFLAERTKVPRRYLTRVLQDLAASGIVSSKSGPKG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G L + ++TILD+V A + C K C L + L +
Sbjct: 62 GYELIAESGELTILDIVNAIAPLERIKACPLGLK---SHTSLCPLHAELDRVYAETEAAF 118
Query: 123 TQYSIECLVRNRSSIKKI 140
+ +I+ L+ + S+I +
Sbjct: 119 ARVTIKQLLESTSTIIPL 136
>gi|309774620|ref|ZP_07669645.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
gi|308917651|gb|EFP63366.1| Rrf2 family protein [Erysipelotrichaceae bacterium 3_1_53]
Length = 134
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL TDY +R+++Y A + +++E I + ++ K+ L +A I+E V G
Sbjct: 1 MHLKISTDYAVRIVLYLAKKR-QLVQSKELSEQLHIPQGYVLKVASILKEAQILEAVTGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFF 119
GG RL + I I DV++A E + + C + GS C + K +
Sbjct: 60 DGGFRLVKHPRDIPIYDVIRAMETTMQINRCLEKDRYCSRDAGSFCQVRHFYEKIQSYLD 119
Query: 120 DVLTQYSIECLVR 132
+L SI+ L+
Sbjct: 120 HMLLSTSIQELLE 132
>gi|302338626|ref|YP_003803832.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Spirochaeta smaragdinae DSM 11293]
gi|301635811|gb|ADK81238.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
smaragdinae DSM 11293]
Length = 126
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 6/132 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK T+Y + ++ A + D + +AE +S +L KIL LVK G + + G
Sbjct: 1 MKYTKATNYALHTMLIMAKNADKRISVQHLAEKQDLSPTYLSKILTKLVKGGFISSFSGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + + I+ LD++ E + + C + V+ A
Sbjct: 61 HGGYALPQNWENISFLDIIHCMEGKSSLF------ECCLNEEEECSIKKVMLLAEEKMEA 114
Query: 121 VLTQYSIECLVR 132
L I L+R
Sbjct: 115 DLKGTRISDLIR 126
>gi|83595124|ref|YP_428876.1| BadM/Rrf2 family transcriptional regulator [Rhodospirillum rubrum
ATCC 11170]
gi|83578038|gb|ABC24589.1| transcriptional regulator, BadM/Rrf2 family [Rhodospirillum rubrum
ATCC 11170]
Length = 151
Score = 86.5 bits (213), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 3/133 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+K+ + I ++ A H P + +I I +L + LQ LV++G++ VRG
Sbjct: 3 RLSKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQHLVRSGVLTGVRGP 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG RL R +ITI ++V+ + + E +G + + + +
Sbjct: 63 RGGYRLARERRRITIGEIVRVVRDLEAIDEAVDELPGS--DLGRQVVRPLWNELHDELMV 120
Query: 121 VLTQYSIECLVRN 133
L +++ L
Sbjct: 121 KLDTLTVDDLCTR 133
>gi|310827114|ref|YP_003959471.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612]
gi|308738848|gb|ADO36508.1| hypothetical protein ELI_1522 [Eubacterium limosum KIST612]
Length = 134
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +R++ A + +SQ+++ I + F +KI++ L +AG+V RG
Sbjct: 1 MLITRETDYALRLVRSLA--DGERRSVSQLSDEEQIPKAFAYKIIKKLERAGLVSIARGS 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNAF 118
GG L +P I++ D++ A + S ++ C S C GSC + L
Sbjct: 59 EGGCSLNKPTSAISLYDLMCAIDGSCSLSPCMESGYRCEWCEKHGSCCFHNHLMVIQEEL 118
Query: 119 FDVLTQYSIECLVR 132
D L S+E +++
Sbjct: 119 NDRLKASSLEEILK 132
>gi|257417296|ref|ZP_05594290.1| YwnA [Enterococcus faecalis AR01/DG]
gi|257159124|gb|EEU89084.1| YwnA [Enterococcus faecalis ARO1/DG]
Length = 139
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ + I +L IA + + + + +++ L KAG++ ++RG
Sbjct: 1 MSTKLSVAIHILSLIETGPQEQVTSEYIASSVNTNPVVVRRLMSQLKKAGLIHSMRGA-N 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
L + ++I++ ++ A E + + +C + + L + K +
Sbjct: 60 KNTLLKKPEEISLYEIYTAVELEREIFNIHQNPNPNCSVGANIQSVLETEFTKVQQKMAE 119
Query: 121 VLTQYSIECLVRN 133
L ++ ++
Sbjct: 120 ELKSITLADVIHE 132
>gi|87307172|ref|ZP_01089317.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM
3645]
gi|87289912|gb|EAQ81801.1| hypothetical protein DSM3645_16655 [Blastopirellula marina DSM
3645]
Length = 153
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 2/134 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ +Y +R + + A +IA + +L K+LQ L KAG+V + RG G
Sbjct: 2 FSQTVEYALRAVCHLAFIAPNSCTTEEIATGTKVPLAYLSKVLQGLAKAGVVRSQRGIGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+ L + D++TIL+VV A + + C V C L L AL +
Sbjct: 62 GMSLIKRPDELTILEVVNAVDPIQRIRTCPLGLST--HGVKLCPLHRRLDNALKGVEEAF 119
Query: 123 TQYSIECLVRNRSS 136
++ ++ S
Sbjct: 120 GGTTLAEVIAEPSE 133
>gi|153003770|ref|YP_001378095.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152027343|gb|ABS25111.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
Fw109-5]
Length = 155
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 1/121 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K TDY I +L + A + ++A + + K+ + L KAG+V + RGR
Sbjct: 3 RMSKLTDYAIVLLAHLA-RSGRTLAAQELAARSGVPLPTVSKLCKELSKAGLVVSHRGRH 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RPA+ I++ ++V+A E + +C + K+ C + +C + A
Sbjct: 62 GGYGLARPAELISVAEIVEALEGPIALTDCTSPAKVACGIEATCPAKASFDPVTRAIQGA 121
Query: 122 L 122
L
Sbjct: 122 L 122
>gi|329922262|ref|ZP_08277964.1| transcriptional regulator [Paenibacillus sp. HGF5]
gi|328942299|gb|EGG38569.1| transcriptional regulator [Paenibacillus sp. HGF5]
Length = 147
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE G
Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
G +L +P IT+LD+ A + + + CP+ V A
Sbjct: 61 -AGAKLAKPPSGITLLDIYHAVHVVQEGSLFGIHENSDTKCPVGKHIQTAIVPVFSAAQK 119
Query: 117 AFFDVLTQYSIECLVRN 133
A D L + ++E +VR
Sbjct: 120 AMEDTLHEVNLEQIVRE 136
>gi|291279997|ref|YP_003496832.1| Rrf2 family transcriptional regulator [Deferribacter desulfuricans
SSM1]
gi|290754699|dbj|BAI81076.1| transcriptional regulator, Rrf2 family [Deferribacter desulfuricans
SSM1]
Length = 140
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T+ DY IR++ Y A D +I +I + + F+ KI+ L K I++T G+ G
Sbjct: 5 ITREVDYAIRIVAYLAG-KDERIKIDEICKKLYLKRPFVIKIIHKLNKCHILKTYTGKNG 63
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G+ L ++++ D+ + + C C L C +T+ + + L
Sbjct: 64 GILLAMDVSELSLYDIFQCLGFKTTINIC-TEKPEHCELNPICNITTFFAGIEKSLVNKL 122
Query: 123 TQYSIECLVRNRSSIKK 139
I+ + N + K
Sbjct: 123 KNAKIKDFIFNDEDLNK 139
>gi|83814365|ref|YP_444885.1| rrf2 family protein (putative transcriptional regulator)
[Salinibacter ruber DSM 13855]
gi|83755759|gb|ABC43872.1| rrf2 family protein (putative transcriptional regulator)
[Salinibacter ruber DSM 13855]
Length = 215
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 14/143 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAI-------------HNDYPNRISQIAEACCISELFLFKILQP 47
M L+K +YG+R ++Y I I++ I FL K+ Q
Sbjct: 54 MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 113
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
L AG++ + RG GGV L R D I++ ++V A + + EC C C L
Sbjct: 114 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEECVLGL-PGCGEAEPCPL 172
Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
+ + + ++ +
Sbjct: 173 HEHWTEERDRMKATFQRTALNEV 195
>gi|254423218|ref|ZP_05036936.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335]
gi|196190707|gb|EDX85671.1| Transcriptional regulator superfamily [Synechococcus sp. PCC 7335]
Length = 134
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 6/130 (4%)
Query: 13 VLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
L+ ++H P RI QIA I + +L ++L L + G V++ RG +GG L R
Sbjct: 3 ALIELSLHYSKGEPLRICQIAAQQGIPDRYLEQLLATLRRGGFVKSQRGAKGGYLLTREP 62
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
Q+++LDVV E + A ++ V ++ + VL +Y+++ L
Sbjct: 63 WQVSLLDVVSCIEG----FDANAREVKSPQTTEGAVVSEVWQEVWRSAESVLEEYTLQDL 118
Query: 131 VRNRSSIKKI 140
V R++ +++
Sbjct: 119 VDKRNTRQQV 128
>gi|301045949|ref|ZP_07193133.1| Rrf2 family protein [Escherichia coli MS 185-1]
gi|300302032|gb|EFJ58417.1| Rrf2 family protein [Escherichia coli MS 185-1]
Length = 112
Score = 86.1 bits (212), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 4/114 (3%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
++ IS++ + +S + KI+ L +AG V VRG+ GG+RL +PA I I D
Sbjct: 3 SLPEGRMTSISEVTDVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGD 62
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
VV+ E + C + C + +C L L KA+ +F L Y++ LV
Sbjct: 63 VVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLTELDNYTLADLV 112
>gi|317132533|ref|YP_004091847.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
harbinense YUAN-3]
gi|315470512|gb|ADU27116.1| transcriptional regulator, BadM/Rrf2 family [Ethanoligenens
harbinense YUAN-3]
Length = 137
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ +DY +RV+++ I+E I FL K+L+ + A IV + RG
Sbjct: 1 MRVTQESDYALRVIIFLYQRGIGERVEARVISEKENIPLRFLLKLLRKMAAANIVRSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
GG + + +I++ +V++A E +V +C + + +C + L+ +
Sbjct: 61 SGGGYAIEKQPSEISVREVIEAVEGPIYVNKCLGDSSQCNLDRTSTCHIHRALQMVQDKL 120
Query: 119 FDVLTQYSIECLVR 132
L + + E +++
Sbjct: 121 LANLDELTFEQILK 134
>gi|313894575|ref|ZP_07828138.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon
158 str. F0412]
gi|313440765|gb|EFR59194.1| transcriptional regulator, Rrf2 family [Veillonella sp. oral taxon
158 str. F0412]
Length = 162
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/141 (27%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A + + + +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMVLHMAMLPSGTKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALN 116
GG L R +I++LDV++A E ++ C S C G C + + +
Sbjct: 61 VDGGFALNRDPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSC--KGHCAINEAMGTIQH 118
Query: 117 AFFDVLTQYSIECLVRNRSSI 137
L + + + L + +I
Sbjct: 119 QLIGQLKEVNFKILAQREQTI 139
>gi|239918539|ref|YP_002958097.1| rrf2 family protein, putative transcriptional regulator
[Micrococcus luteus NCTC 2665]
gi|281415252|ref|ZP_06246994.1| rrf2 family protein, putative transcriptional regulator
[Micrococcus luteus NCTC 2665]
gi|239839746|gb|ACS31543.1| rrf2 family protein, putative transcriptional regulator
[Micrococcus luteus NCTC 2665]
Length = 169
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 11/151 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L ++ L+ P + +AEA +S +L K LQ L G+V + G
Sbjct: 4 MQLPNGVEWTAHCLVVLEQFGSTQPVPSAALAEAYGLSPTYLNKHLQKLAANGLVTSTPG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
+ GG L RPA +IT+ DVV A + + C F + G C + S +
Sbjct: 64 QAGGFALARPAQEITLADVVDALDGRGPIFRCTEIRCQGLFKERSAEIKASGPCRIASAM 123
Query: 112 RKALNAFFDVLTQYSIECLVR--NRSSIKKI 140
R+A +A+ L+Q SI L + S +++
Sbjct: 124 RQAEDAWRSSLSQVSITDLAAGVDAHSRQQL 154
>gi|311029207|ref|ZP_07707297.1| hypothetical protein Bm3-1_01416 [Bacillus sp. m3-13]
Length = 138
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 51/134 (38%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L+ A D+ +IA+ + + KI+ L G V T G G
Sbjct: 1 MNSEFTIAVHSLVLLAHLPDHMASSQKIADNVSTNPARIRKIMSCLRNHGFVRTKEGIGG 60
Query: 63 GVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFF 119
G L R D+IT+ + ++ + C + +C + + L V + F
Sbjct: 61 GYILQRDPDEITLGQIYRSVSGATIKPNWCSGDPEEECVVASNIQLVMDEVFEETDQYFS 120
Query: 120 DVLTQYSIECLVRN 133
L + SI +++
Sbjct: 121 AYLDRISIASILKK 134
>gi|182414244|ref|YP_001819310.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
gi|177841458|gb|ACB75710.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
PB90-1]
Length = 137
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + DY RVL A + +I +A + FL +IL L G++ + R
Sbjct: 1 MKISTKVDYACRVLAELARLHGSGELAQIEHLARVEKLPPNFLAQILSELRNGGLITSRR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L RP DQI++ D++ + + + + V + +F
Sbjct: 61 GIQGGYALARPPDQISLYDIITLIDGAVL------ELSGNHEGRSGRRIRQVWLEIRESF 114
Query: 119 FDVLTQYSIECLVRNRSS 136
+ +Y+++ LV
Sbjct: 115 EEKTKRYTLDQLVTKAPE 132
>gi|269797540|ref|YP_003311440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Veillonella parvula DSM 2008]
gi|269094169|gb|ACZ24160.1| transcriptional regulator, BadM/Rrf2 family [Veillonella parvula
DSM 2008]
Length = 143
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + TDY R++++ A+ + + +AE I E FL KI++ L+ AGI+++ RG
Sbjct: 1 MKLNQATDYAFRMVLHMALLPSGSKITGAVLAEQELIPERFLLKIMRSLIAAGIMKSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-HKIDCPLVGSCGLTSVLRKALNAF 118
GG L R +I++LDV++A E ++ C G C + + +
Sbjct: 61 VDGGFALNRSPQEISLLDVIRAVEGDAYLQRCLYDVGSCSKSCKGHCAINEAMGVIQHQL 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
+ L + + L + I
Sbjct: 121 INQLEAVNFKTLAQREQLI 139
>gi|253582245|ref|ZP_04859468.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251835784|gb|EES64322.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 136
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+LMY I+ D ++I+E I LF +IL+ L KA +V +G
Sbjct: 1 MRLKNEIEYVFRILMYLTINGDNRIIPSNEISEKEEIPHLFSLRILKKLEKADLVLIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + + +IT+ D +++ E S + +C S + G+CG+ +L+ + F
Sbjct: 61 AKGGYKLKKDSREITLKDAIESIEGSICIKDCLESPESCTLRKGNCGVHRILKDIESQFI 120
Query: 120 DVLTQYSIECLVRNR 134
L + L +
Sbjct: 121 SRLQNVNFRDLADGK 135
>gi|269122202|ref|YP_003310379.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Sebaldella termitidis ATCC 33386]
gi|268616080|gb|ACZ10448.1| transcriptional regulator, BadM/Rrf2 family [Sebaldella termitidis
ATCC 33386]
Length = 137
Score = 86.1 bits (212), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R I +L+ D IA + + + + +I+ L +AG+++ G
Sbjct: 1 MKISSRFSVAIHILVLLECGKDKIFTSEFIAGSVNTNPVVIRRIMGKLKEAGLIDVKSG- 59
Query: 61 RGGVRLCRPADQITILDVVKA--TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + ++I++ DV KA + + DCP+ L L KA
Sbjct: 60 TGGAHLLKAPEEISLYDVYKAGEVVSAGELFSIHEHPNTDCPVGAKIQGVLEIFLLKAQE 119
Query: 117 AFFDVLTQYSIECLVR 132
A VL SI+ ++
Sbjct: 120 AMEQVLKDTSIKDILE 135
>gi|300777499|ref|ZP_07087357.1| possible transcription regulator [Chryseobacterium gleum ATCC
35910]
gi|300503009|gb|EFK34149.1| possible transcription regulator [Chryseobacterium gleum ATCC
35910]
Length = 143
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y IR L++ A + I I+ E F+ KILQ L + G V++ +G
Sbjct: 2 FSKTCEYAIRALIFIAQKSKDGSRIGIKDISSGIDSPEYFIAKILQDLSRKGFVQSAKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + ++ D+V+ + + C K +C C + + +
Sbjct: 62 NGGFYMDDANLEQSVADIVREIDGDKLFSGCGLGLK-ECSEDHPCPIHNDFKHIRQEIKT 120
Query: 121 VLTQYSIECLVRN 133
+L + I+ V N
Sbjct: 121 MLEESRIQLFVEN 133
>gi|237736975|ref|ZP_04567456.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
gi|229420837|gb|EEO35884.1| conserved hypothetical protein [Fusobacterium mortiferum ATCC 9817]
Length = 143
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +Y IR+L+Y + + ++I++A I LF +IL+ L KA +V+ +G
Sbjct: 1 MRIKNEIEYVIRILLYLTKYGENRIVSSNEISDAEDIPHLFSLRILKKLEKASLVKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG +L +P+++IT+ D V+ E + +C + G C + F
Sbjct: 61 ARGGYQLTKPSEEITLRDAVETIEPVICIKDCVNDPESCSLRKGECAVHRAFNGIQREFI 120
Query: 120 DVLTQYSIECLVRN 133
L + + L
Sbjct: 121 KALESRNFKELAEE 134
>gi|295109399|emb|CBL23352.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus obeum
A2-162]
Length = 149
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + V++ AI+ + + IAE+ + F+ +++ L KAG++ +V G
Sbjct: 1 MKYSTKLSDTVHVMVLIAINKEKSLSSASIAESVHTNPGFVRQLMLKLKKAGLMTSVAGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PADQIT+LD+ KA E + +C + + L +
Sbjct: 61 ARPS-LSKPADQITLLDIYKAVEGDKPLLHLDTHTNPECGVGINIQLSLQGFYNEIQKTA 119
Query: 119 FDVLTQYSIECLVR 132
+ + +++ ++
Sbjct: 120 EEKMNTITLQDIID 133
>gi|194335315|ref|YP_002017109.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
phaeoclathratiforme BU-1]
gi|194307792|gb|ACF42492.1| transcriptional regulator, BadM/Rrf2 family [Pelodictyon
phaeoclathratiforme BU-1]
Length = 154
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY IR L+ A IA I FL +LQ +++ ++ + G
Sbjct: 1 MKVLTKNTDYAIRALLALAARKGSYVSARSIATEHDIPYQFLRGLLQEMIRHDLIVSKEG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + + D I++ +++ + ++EC +I C C L + +
Sbjct: 61 VQGGFMMKKDPDTISVTQLIEIFQGKVQMSECMFRKQI-CGNRARCVLRHEIMRIEQVVQ 119
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ +I L+R+ + ++
Sbjct: 120 SEFEKVTIGKLMRDLQAANQV 140
>gi|229019725|ref|ZP_04176531.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
gi|229025951|ref|ZP_04182341.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228735352|gb|EEL85957.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228741570|gb|EEL91764.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
Length = 151
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL ++E LV N +S IK+
Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151
>gi|295676234|ref|YP_003604758.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1002]
gi|295436077|gb|ADG15247.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1002]
Length = 149
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPVLIRRLLAMLSEAGLTTSQMGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +QIT+LDV +A E++ A C + + L+ ++ +A A
Sbjct: 61 GGGALLARRPEQITLLDVYRAVEDAQLFALHREEPNPACMVGRNIQSVLSGIVDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L ++
Sbjct: 121 EAALAARTLAD 131
>gi|229098964|ref|ZP_04229899.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
gi|229105131|ref|ZP_04235782.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
gi|229117993|ref|ZP_04247353.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
gi|228665442|gb|EEL20924.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
gi|228678312|gb|EEL32538.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
gi|228684462|gb|EEL38405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
Length = 151
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL ++E LV N +S IK+
Sbjct: 128 AMENVLANVTVEQLVTNLKSKIKE 151
>gi|187780034|ref|ZP_02996507.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC
15579]
gi|187773659|gb|EDU37461.1| hypothetical protein CLOSPO_03630 [Clostridium sporogenes ATCC
15579]
Length = 141
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV++Y + I+E + FL K+L+ L K+GIV + RG
Sbjct: 1 MKITQEADYALRVILYLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K
Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRKL 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
L + + ++ + SI
Sbjct: 121 VSELEAVNFQEILDQKGSI 139
>gi|332284622|ref|YP_004416533.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7]
gi|330428575|gb|AEC19909.1| hypothetical protein PT7_1369 [Pusillimonas sp. T7-7]
Length = 168
Score = 85.7 bits (211), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 7/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + I + A + + + +AE +S +L K LQ L AGIV T+ G
Sbjct: 1 MKLGDGVEQAIHSVTMLAGLSSSGVLSAAALAEFHGVSASYLLKHLQALSGAGIVHTLPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL R +IT+LD+V A E S C + L C + + + +
Sbjct: 61 PKGGYRLARQPAKITLLDIVLAVEGSSPAFRCNEIRRRGPNPPSSSMLTKPCSINAAMLR 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
A A+ L + SI ++ S++
Sbjct: 121 AEQAYRAELRRVSIADILSEVSAM 144
>gi|86358381|ref|YP_470273.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
gi|86282483|gb|ABC91546.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
Length = 162
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +V+T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL R +I LD+V+A E C C C + V+ +
Sbjct: 61 PSGGYRLARSPSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARVMWE 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A A+ + L + LV
Sbjct: 121 ADEAWRNTLRAVRLSDLV 138
>gi|206602829|gb|EDZ39310.1| Transcriptional regulator, BadM/Rrf2 family [Leptospirillum sp.
Group II '5-way CG']
Length = 141
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 8/131 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++R +Y +R L+ A+ D +QIA I + FL +IL LVK GIVE+ RG R
Sbjct: 4 RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
G L + + I++ ++ E + + ++ + V
Sbjct: 64 GKYCLGQRPEDISLYRLLAMVEGEIVFFDPATPPGP--------AIQTLYSDIRDGLVGV 115
Query: 122 LTQYSIECLVR 132
L +++++ V
Sbjct: 116 LDRFTLDAFVE 126
>gi|150019861|ref|YP_001312115.1| BadM/Rrf2 family transcriptional regulator [Clostridium
beijerinckii NCIMB 8052]
gi|149906326|gb|ABR37159.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
beijerinckii NCIMB 8052]
Length = 137
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M++ + +DY R+++ + D ++E I FL K+ + L +AGI+++ RG
Sbjct: 1 MNINQESDYAFRIILMLSKEGLDNKLDAKSLSEKGNIPLRFLLKLTRKLTQAGILKSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG + R IT+ DVV+A + V C G C + L N
Sbjct: 61 VNGGYAITREPKDITLKDVVEAIQGPIIVTRCVYDGKACSANKAGHCSIHKALYNIQNTM 120
Query: 119 FDVLTQYSIECLVRNR 134
+ L + + + L +
Sbjct: 121 INELEKVNFDKLKNDP 136
>gi|72161204|ref|YP_288861.1| BadM/Rrf2 family transcriptional regulator [Thermobifida fusca YX]
gi|71914936|gb|AAZ54838.1| transcriptional regulator, BadM/Rrf2 family [Thermobifida fusca YX]
Length = 150
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ R DY +R A P Q+A A I FL IL L +AG+V + RG
Sbjct: 1 MRLSARVDYALRAAAELAAVGGGPVTAEQLARAQAIPGKFLENILTQLRRAGLVRSQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA +I++ D+++A + ++ L V +
Sbjct: 61 VGGYWLARPASEISLADIIRAVDGPLANVRGERPEHLEYDGAAR-SLQQVWIALRASERA 119
Query: 121 VLTQYSIECLVRNR--SSIKKI 140
+L ++E + ++ S++ +
Sbjct: 120 ILESVTLEHVATSQLPESVRSL 141
>gi|258544534|ref|ZP_05704768.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826]
gi|258520216|gb|EEV89075.1| Rrf2 family protein [Cardiobacterium hominis ATCC 15826]
Length = 155
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 63/130 (48%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK ++Y +L + +A+ I+ K+L+ L + GI+E++RG
Sbjct: 2 LRITKESEYAFLLLGAILSAEGAARNTATLAKEARIAVPMSGKVLKRLTQQGILESIRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L R A+ +T LDVV+A E + EC + + +C L C + ++ +
Sbjct: 62 HGGYQLARAAESVTALDVVEAIEGGPELVEC-TNGETNCALAEHCQFSPFWQELNDDIRA 120
Query: 121 VLTQYSIECL 130
+L ++ +
Sbjct: 121 MLAAKTLADM 130
>gi|320533390|ref|ZP_08034080.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337]
gi|320134407|gb|EFW26665.1| Rrf2 family protein [Actinomyces sp. oral taxon 171 str. F0337]
Length = 165
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 8/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K ++ L+ + + +A +S +L K LQ L AGIV +V G
Sbjct: 1 MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVLR 112
GG RL +PA ++++ DVV A + + +C K G C + +
Sbjct: 61 SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFIDQKSQILASGLCSINRAMS 120
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A +A+ L SI L
Sbjct: 121 RAEDAWRASLAGTSIADLAA 140
>gi|290968839|ref|ZP_06560376.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
gi|290781135|gb|EFD93726.1| Rrf2 family protein [Megasphaera genomosp. type_1 str. 28L]
Length = 144
Score = 85.4 bits (210), Expect = 2e-15, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY IR+L A+ + I +I++ I F +KI + L AG +E +RG
Sbjct: 1 MIITRETDYAIRILR--ALEGKDVSSIREISDTEYIPLQFAYKIAKKLDHAGCIEIIRGP 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
GG RL + +T+ ++++ T+ V C + C + + L + +
Sbjct: 59 HGGCRLVKDLHAVTLFEIIQITDRENMVTSCMNEDFYCMYREVNEECIMHTSLCQVQSHI 118
Query: 119 FDVLTQYSIECLV--RNRSSIKKI 140
L +I L+ + KKI
Sbjct: 119 TKYLKTLTIHDLIFLKKGRKRKKI 142
>gi|124514277|gb|EAY55791.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
rubarum]
Length = 141
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++R +Y +R L+ A+ D +QIA I + FL +IL LVK GIVE+ RG R
Sbjct: 4 RLSQRVEYAVRALIELALVGDAGLSGTQIATRGQIPKPFLKQILAILVKGGIVESTRGPR 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
G L + ++I++ ++ E + + ++ + V
Sbjct: 64 GKYCLGQRPEEISLYRLLAMVEGEIVFFDPATPPGP--------AIQTLYSDIRDGLVGV 115
Query: 122 LTQYSIECLVR 132
L +++++ V
Sbjct: 116 LDRFTLDAFVE 126
>gi|331698727|ref|YP_004334966.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia
dioxanivorans CB1190]
gi|326953416|gb|AEA27113.1| transcriptional regulator, BadM/Rrf2 family [Pseudonocardia
dioxanivorans CB1190]
Length = 160
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ ++ + + + P +++A +S +L K LQ L +AG+V +V+G+
Sbjct: 1 MKMSGGVEWALHCCVVLTGATE-PVPAARLAAFHDVSPTYLAKQLQALSRAGLVRSVQGQ 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG +L R IT+LDVV+A + C FA+ C + CG+ SV+
Sbjct: 60 AGGYQLTRDPQAITVLDVVEAVDGRQSAFVCTEIRQRGPFAATPEQCRV--PCGIASVMY 117
Query: 113 KALNAFFDVLTQYSIECLV 131
A A+ D L +I L
Sbjct: 118 DADRAWRDSLRATTIADLA 136
>gi|226312193|ref|YP_002772087.1| hypothetical protein BBR47_26060 [Brevibacillus brevis NBRC 100599]
gi|226095141|dbj|BAH43583.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 146
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L +I ++ IA + + + + ++L L KAG+V G
Sbjct: 1 MKISSRFSIAVHILSLLSIDSNSHCTSEWIAGSVNTNPVVIRRVLGLLKKAGLVNVRAGA 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + DQIT+L++ +A + E + DCP+ + L +L +A +
Sbjct: 61 -GGASLAKELDQITLLEIYRAVDVVEEGQLFHIHEQPNPDCPVGANIQFVLELILTRAQH 119
Query: 117 AFFDVLTQYSIECLVRN 133
A ++L + LV N
Sbjct: 120 AMEEILGGVKMSELVDN 136
>gi|257469482|ref|ZP_05633574.1| hypothetical protein FulcA4_09098 [Fusobacterium ulcerans ATCC
49185]
gi|317063726|ref|ZP_07928211.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313689402|gb|EFS26237.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 136
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 67/135 (49%), Gaps = 1/135 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L+Y I+ D ++I+E I LF +IL+ L KA +V +G
Sbjct: 1 MRLKNEIEYVFRILLYLTINGDNRIISSNEISEKEEIPHLFSLRILKKLEKADLVLIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + + +IT+ D +++ E + + +C S + G+CG+ +L+ + F
Sbjct: 61 AKGGYKLKKDSSEITLKDAIESIEGNICIKDCLESPESCTLRKGNCGVHRILKDIESQFI 120
Query: 120 DVLTQYSIECLVRNR 134
L + L +
Sbjct: 121 SRLQDVNFRDLADGK 135
>gi|241205480|ref|YP_002976576.1| BadM/Rrf2 transcriptional regulator [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240859370|gb|ACS57037.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 162
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +VET G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL + I L++V+A E C C C + ++ +
Sbjct: 61 PSGGYRLAKTPSDINFLEIVEAVEGKARSFTCTNIRANNPCRPEGYCDSKPCAVARIMWE 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A A+ D L + + LV
Sbjct: 121 ADEAWRDTLRRVRLSDLV 138
>gi|225572359|ref|ZP_03781223.1| hypothetical protein RUMHYD_00653 [Blautia hydrogenotrophica DSM
10507]
gi|225040241|gb|EEG50487.1| hypothetical protein RUMHYD_00653 [Blautia hydrogenotrophica DSM
10507]
Length = 157
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 48/137 (35%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + L++ A + D +A + + + + IL L + V RG
Sbjct: 1 MRLNTKYSIALHCLVFLAEYGDQMKVTSEVLARSTGCNPVIIRNILGALQRENFVTIARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG L ++T+ V +A E CP+ L+ ++
Sbjct: 61 V-GGAHLNTDPKKLTVWQVYQAVEPEGLEHFMNLHPHPSGKCPVGRRIAEVLSHPYQQIE 119
Query: 116 NAFFDVLTQYSIECLVR 132
A + +++ L+
Sbjct: 120 EAIQQTMENITLQQLLD 136
>gi|110634404|ref|YP_674612.1| BadM/Rrf2 family transcriptional regulator [Mesorhizobium sp. BNC1]
gi|110285388|gb|ABG63447.1| transcriptional regulator, BadM/Rrf2 family [Chelativorans sp.
BNC1]
Length = 169
Score = 85.4 bits (210), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + I + A + + S +AE +S +L K LQ L A I+E+V G
Sbjct: 1 MKLSDGVEAAIHCAVVLAQLEGEGTLPGSALAELYGLSPSYLLKHLQALAAAKILESVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
GG RL + ++I++LD+V A E C CG+ + + +
Sbjct: 61 PYGGYRLAKAPERISLLDIVLAVEGPKPAFRCAEIRQRGPGALEPSAYAKPCGINAAMLR 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A A+ VL + + +V +
Sbjct: 121 AERAWRAVLAETKLSEIVDGYKA 143
>gi|78776924|ref|YP_393239.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
denitrificans DSM 1251]
gi|78497464|gb|ABB44004.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
denitrificans DSM 1251]
Length = 133
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ ++Y I L+ + + P ++ I + FL KILQ + K GI+++ +G
Sbjct: 1 MLITRASEYAILSLIVLSKAS-APMDSETLSTQLSIPKSFLAKILQAMAKHGILKSFKGV 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG L I +L V+ + E + CP + C L L K
Sbjct: 60 NGGFSLLLEPKDIKMLQVIASVEGKAPAVFECSPSMYSCPSGKAQLCSLWPFLNKLQGKI 119
Query: 119 FDVLTQYSIECLVR 132
L ++ ++
Sbjct: 120 DSFLADLTLADILE 133
>gi|261597140|gb|ACX85433.1| putative transcriptional regulator [Arthrobacter sp. NyZ415]
Length = 158
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ I + + D S+ A +S +L K +Q L + G+V +++G
Sbjct: 1 MKLSGGVEWAIHCCVVLSRM-DGAVPASKFAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L RPA+QI+ILDVV+A E + C + DC + C + +
Sbjct: 60 AGGYVLTRPAEQISILDVVQAVEGQQPLFVCTEIRQRGPLGTPPEDC--LTPCPIAKAMM 117
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A A+ + L + +I L
Sbjct: 118 TAEAAWREALREVTIGDLAHQ 138
>gi|226357841|ref|YP_002787581.1| transcriptional regulator, Rrf2 family [Deinococcus deserti VCD115]
gi|226320084|gb|ACO48077.1| putative transcriptional regulator, Rrf2 family [Deinococcus
deserti VCD115]
Length = 138
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ +L +++ +IA + ++ + + ++ L KAG+++T +G G RL RP
Sbjct: 8 AVHILTLISLYPHNARTSDEIAASVGVNPVVVRNVMSLLRKAGLLDTRQGSP-GARLIRP 66
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
+ IT+LDV A V + CP+ G+ LT+VL A A D L ++
Sbjct: 67 PEAITLLDVYHAVNAPELVFKLHDQPHPQCPVGGNIQAALTTVLGNAQQAMEDHLATVTL 126
Query: 128 ECLVRN 133
++ +
Sbjct: 127 ADIMAD 132
>gi|261408945|ref|YP_003245186.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
Y412MC10]
gi|261285408|gb|ACX67379.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
Y412MC10]
Length = 150
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+++ R I +L ++ + IAE+ + + + +I+ L KAG+VE G
Sbjct: 1 MNISSRFAVAIHILSVLEMNKAGVSTSDYIAESVNTNPVVIRRIVGMLSKAGLVEVKPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
G +L +P IT+LD+ A + + + CP+ V A
Sbjct: 61 -AGAKLAKPPSGITLLDIYHAVHVVQEGSLFGIHENSDAKCPVGKHIQTAIVPVFSAAQK 119
Query: 117 AFFDVLTQYSIECLVRN 133
A D L + ++E +VR
Sbjct: 120 AMEDTLHEVNLEQIVRK 136
>gi|163783457|ref|ZP_02178448.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1]
gi|159881221|gb|EDP74734.1| hypothetical protein HG1285_08589 [Hydrogenivirga sp. 128-5-R1-1]
Length = 144
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/126 (24%), Positives = 53/126 (42%), Gaps = 4/126 (3%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
H D + +IA+A I + FL KIL L + ++ +V+G +GG L +++T+ DVV
Sbjct: 20 HRDRLVKADEIAKAQNIPKPFLSKILHELARRDVLHSVKGPKGGFALKTDPEKLTMWDVV 79
Query: 80 KATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR-NRSS 136
E + C C + + C + K D L +I LV
Sbjct: 80 SLMGEDYRFQACVL-MPDKCEVYETNPCVVHHRWEKLKRKIVDFLKNTTIADLVSVEERH 138
Query: 137 IKKIFN 142
+ + +
Sbjct: 139 LADLLS 144
>gi|116252972|ref|YP_768810.1| Rrf2 family transcriptional regulator protein [Rhizobium
leguminosarum bv. viciae 3841]
gi|115257620|emb|CAK08717.1| putative Rrf2 family transcriptional regulator protein [Rhizobium
leguminosarum bv. viciae 3841]
Length = 162
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 55/138 (39%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +VET G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL + I L++V+A E C C C + ++ +
Sbjct: 61 PSGGYRLAKTPSDINFLEIVEAVEGKARSFTCTNIRANNPCRPEGYCDSKPCAVARIMWE 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A A+ D L + + LV
Sbjct: 121 ADEAWRDTLRRVRLSDLV 138
>gi|15964295|ref|NP_384648.1| hypothetical protein SMc02238 [Sinorhizobium meliloti 1021]
gi|307307031|ref|ZP_07586770.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
gi|307320111|ref|ZP_07599531.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|15073472|emb|CAC45114.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306894157|gb|EFN24923.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|306901971|gb|EFN32570.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
Length = 168
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 6/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + I + + + + +AE +S +L K LQ + AG++E V G
Sbjct: 1 MKLGDGVEQAIHSVTMLSCLQPGSTLSAAALAEFHGVSTSYLLKHLQAMSGAGLLEAVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
+GG RL R ++IT+LD+V A E C + C C + + +A
Sbjct: 61 PKGGYRLARAPEKITLLDIVLAVEGPEPAFRCNEIRLRGPNPYSCKPAAPCTINVAMLRA 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
A+ L + +I ++ + +I +
Sbjct: 121 EQAYRAELRRVTIAAIMADLKAIDR 145
>gi|56551318|ref|YP_162157.1| BadM/Rrf2 family transcriptional regulator [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241760972|ref|ZP_04759061.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
gi|56542892|gb|AAV89046.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis ZM4]
gi|241374591|gb|EER64052.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis ATCC 10988]
Length = 135
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ TDY + VL H +AE + + K++ L A ++ ++R
Sbjct: 1 MRLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L RPA++IT+ DVV+A E ++ C + + C CG+ +
Sbjct: 61 GMGGGFTLARPAEEITLADVVEAIEGPIAMSSC-DNKESLCKFSAECGMRPRWPEVNRTV 119
Query: 119 FDVLTQYSIECLV 131
+ L S++ L
Sbjct: 120 KNALESISLKSLA 132
>gi|89054908|ref|YP_510359.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
gi|88864457|gb|ABD55334.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
Length = 141
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 2/139 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R +L A+ D P IA+ + + KI+ L ++GI + G
Sbjct: 1 MPVSSRLAVATHILTVMAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRSGITTSQTGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
+GG L R +QIT+LDV +A + A CP+ L V KA A
Sbjct: 61 KGGTHLARAPEQITLLDVYRAVDTQEIFASPNCPPDASCPIGSQIGPVLDEVKAKATQAM 120
Query: 119 FDVLTQYSIECLVRNRSSI 137
L SI + +
Sbjct: 121 EAELAAVSIAAIADKLKPL 139
>gi|319955408|ref|YP_004166675.1| transcriptional regulator, badm/rrf2 family [Cellulophaga algicola
DSM 14237]
gi|319424068|gb|ADV51177.1| transcriptional regulator, BadM/Rrf2 family [Cellulophaga algicola
DSM 14237]
Length = 143
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YG+R +++ A +D +S I+E + F KILQ L K IV +++G
Sbjct: 2 FSKSCEYGLRAVLFIAQQSDKDTKVSMSTISEEINSPQAFTAKILQKLTKTQIVHSLKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + ++V + C K C C L + + +
Sbjct: 62 YGGFSILPEKMDTKLSEIVTILDGDSIYKGCALGLKQ-CDANSPCPLHFKFVEIRDNLQE 120
Query: 121 VLTQYSIECLVRN 133
+L SI+ +V +
Sbjct: 121 MLETTSIKSVVND 133
>gi|294506739|ref|YP_003570797.1| transcriptional regulator [Salinibacter ruber M8]
gi|294343067|emb|CBH23845.1| Transcriptional regulator [Salinibacter ruber M8]
Length = 162
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 14/143 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAI-------------HNDYPNRISQIAEACCISELFLFKILQP 47
M L+K +YG+R ++Y I I++ I FL K+ Q
Sbjct: 1 MLLSKSCEYGLRAMLYLGTLEDDEAAEDEDAGPTREYVSIQTISDDLEIGFSFLTKVFQQ 60
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
L AG++ + RG GGV L R D I++ ++V A + + EC C C L
Sbjct: 61 LNDAGLLTSKRGPGGGVALTRAPDAISLYEIVVAIDGNDLFEECVLGL-PGCGEAEPCPL 119
Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
+ + + ++ +
Sbjct: 120 HEHWTEERDRMKTTFQRTALNEV 142
>gi|251773253|gb|EES53803.1| transcriptional regulator, BadM/Rrf2 family [Leptospirillum
ferrodiazotrophum]
Length = 174
Score = 85.0 bits (209), Expect = 3e-15, Method: Composition-based stats.
Identities = 42/138 (30%), Positives = 56/138 (40%), Gaps = 12/138 (8%)
Query: 3 LTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L K +Y + L+ D P +S IAE +S +L KI L KAGIV G +
Sbjct: 7 LGKGVEYALHSLLSLIKTPEDSPLGVSDIAEFQGVSPSYLSKIFTRLKKAGIVRFSIGVK 66
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECF-----------ASHKIDCPLVGSCGLTSV 110
GG L +P DQIT DVV A E F + EC D G C +
Sbjct: 67 GGYVLAKPPDQITFWDVVVAVEGEFSLFECRNIREKIAIYKEGCLNPDWQSRGPCTIHKA 126
Query: 111 LRKALNAFFDVLTQYSIE 128
+ + L + +I
Sbjct: 127 MMDVETQIRNSLKEKNIA 144
>gi|228993237|ref|ZP_04153158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
12442]
gi|228999285|ref|ZP_04158865.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
gi|229006840|ref|ZP_04164473.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
gi|228754462|gb|EEM03874.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
gi|228760482|gb|EEM09448.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
gi|228766563|gb|EEM15205.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
12442]
Length = 151
Score = 85.0 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R D+IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 69 -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A VL +++ LV N +S IKK
Sbjct: 128 AMESVLANVTVQQLVTNLQSKIKK 151
>gi|327398553|ref|YP_004339422.1| BadM/Rrf2 family transcriptional regulator [Hippea maritima DSM
10411]
gi|327181182|gb|AEA33363.1| transcriptional regulator, BadM/Rrf2 family [Hippea maritima DSM
10411]
Length = 143
Score = 85.0 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 52/129 (40%), Gaps = 4/129 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + Y +R+L+ +++ P + +++E ISE +L ++ L K +++ +G
Sbjct: 18 MKFPTKVRYSLRLLIEI-KNSNKPITLREVSEKTHISENYLKQLAAKLEKEKVIKGKKGP 76
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + P T+ +++ +A C C L+ C + +
Sbjct: 77 NGGYTILNP--DFTLKELIDIFTGGVKLAPCMDDD-YRCELMDICKARDIWSQLNKDIDK 133
Query: 121 VLTQYSIEC 129
+ ++
Sbjct: 134 LFLSVKLKD 142
>gi|296106185|ref|YP_003617885.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy]
gi|295648086|gb|ADG23933.1| rrf2 family protein [Legionella pneumophila 2300/99 Alcoy]
Length = 139
Score = 85.0 bits (209), Expect = 4e-15, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
++Y A H+ IA ++ + KIL+ L AG++ +VRG GG RL RPA +I
Sbjct: 1 MVYLAKHSQELCNARDIALHTHLTVPTVSKILKRLTSAGLLTSVRGVSGGYRLQRPAAEI 60
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
++ ++ A EE EC DC L G C + R +A L S+E L +
Sbjct: 61 SVSQIIFALEEHRGFTECSMQP-NDCFLQGVCTIQGNWRLISHAIETALDSVSLEALAK 118
>gi|187923598|ref|YP_001895240.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Burkholderia phytofirmans PsJN]
gi|187714792|gb|ACD16016.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
phytofirmans PsJN]
Length = 151
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 56/131 (42%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGAPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +QIT+L+V +A +++ A C + + L ++ +A A
Sbjct: 61 GGGALLARAPEQITLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L ++
Sbjct: 121 EAALDARTLAD 131
>gi|325284831|ref|YP_004264293.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
proteolyticus MRP]
gi|324316546|gb|ADY27658.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
proteolyticus MRP]
Length = 146
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 3/142 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ +Y +R + A +Q+A + +L K+LQ L +AG+++ +RG+ G
Sbjct: 2 FSQTAEYALRAAVTLA-EAGESLSTAQLAGRTQVPAQYLSKVLQQLHRAGLLQALRGKYG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL RP ITILDVV A + + C C L + +AL L
Sbjct: 61 GYRLARPPQDITILDVVNAVDPLQRIRHCPLGRPA--HAHALCPLHRQMDQALAQIEQTL 118
Query: 123 TQYSIECLVRNRSSIKKIFNAG 144
++ ++ ++ + G
Sbjct: 119 GAQTLAAMLELGQPGPELLHLG 140
>gi|221319934|ref|ZP_03601228.1| hypothetical protein BsubsJ_14863 [Bacillus subtilis subsp.
subtilis str. JH642]
Length = 111
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
+ ++ + YG+ +++ A H + P + IA+ +SE +L +++ PL AG+V+++RG
Sbjct: 2 LKISTKGRYGLTIMIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC 91
GG L D IT D+++ E + +C
Sbjct: 62 AYGGYVLGSEPDAITAGDIIRVLEGPISLLKC 93
>gi|170760968|ref|YP_001785621.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
gi|169407957|gb|ACA56368.1| rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
Length = 143
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +++ L KAG+V +V
Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKKAGLV-SVIAG 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + DQIT+LDV +A E + + + S I+CP+ + + +L A
Sbjct: 60 TGGAYLLKDLDQITLLDVYRAVEVVKEGELFQFHDSPNINCPIGANIQSVMEGILLNAQE 119
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A VL ++E +V R I+K
Sbjct: 120 AMEQVLENVTMEYVVAGIRKKIEK 143
>gi|119512675|ref|ZP_01631749.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414]
gi|119462690|gb|EAW43653.1| hypothetical protein N9414_10748 [Nodularia spumigena CCY9414]
Length = 129
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 35/126 (27%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 17 CAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
A H + P +I QIA I + +L ++L L + GIV++ RG +GG L R +IT
Sbjct: 1 MATHYQSGEPMQIRQIAAQQSIPDRYLEQLLATLRRGGIVKSQRGSKGGYFLTREPWKIT 60
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ DV++ E V C + + + ++A A VL Y+++ L R
Sbjct: 61 VFDVLECLEG-LDVRTCEEDNNPKSIDTA--VIKEIWQEACQAANLVLQNYTLQELCEKR 117
Query: 135 SSIKKI 140
S +++
Sbjct: 118 DSRRQL 123
>gi|88658169|ref|YP_507438.1| rrf2/aminotransferase, class V family protein [Ehrlichia
chaffeensis str. Arkansas]
gi|88599626|gb|ABD45095.1| rrf2/aminotransferase, class V family protein [Ehrlichia
chaffeensis str. Arkansas]
Length = 492
Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats.
Identities = 24/107 (22%), Positives = 47/107 (43%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
S IA + +SE +L +I+ L K G++ + +G GG L + + IT+ ++++ E+
Sbjct: 2 SHIANSQSLSEGYLEQIIVKLKKQGLINSTKGPGGGYSLNKSPNSITLNLILESIGENIK 61
Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ C C ++ N L S+E ++ N
Sbjct: 62 ITRCKNHLIGCLSNNARCITHNLWDNIGNHIKKYLNSISLEDILNNN 108
>gi|282882582|ref|ZP_06291201.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus
lacrimalis 315-B]
gi|281297557|gb|EFA90034.1| BadM/Rrf2 family transcriptional regulator [Peptoniphilus
lacrimalis 315-B]
Length = 135
Score = 84.6 bits (208), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY R+ + A H + IAE C ++E F +IL+ L AGI RG
Sbjct: 1 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-----SCGLTSVLRKAL 115
+GG L RP ++IT+ ++ A + + C + C C L
Sbjct: 61 KGGYGLKRPKEEITLYQIICAIDGPTVINRCLG-YDHYCNRKAENGVKHCKFHKKLFHIQ 119
Query: 116 NAFFDVLTQYSIE 128
++ +I+
Sbjct: 120 KTIINMFDSETID 132
>gi|322389974|ref|ZP_08063513.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
ATCC 903]
gi|321143287|gb|EFX38726.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
ATCC 903]
Length = 149
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 65/141 (46%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R G VL+ A+ + +A + ++ + + K L L KAG++ RG
Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG L + +D+I++LD+ +A E + + + CP+ + + +VL
Sbjct: 61 -TGGAELAKASDEISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A ++Q +++ +V +
Sbjct: 118 DIQTAMEKEMSQTTLKDVVED 138
>gi|228990968|ref|ZP_04150931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
12442]
gi|228997055|ref|ZP_04156686.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
gi|229004710|ref|ZP_04162447.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
gi|228756598|gb|EEM05906.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock1-4]
gi|228762680|gb|EEM11596.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides Rock3-17]
gi|228768748|gb|EEM17348.1| Transcriptional regulator, BadM/Rrf2 [Bacillus pseudomycoides DSM
12442]
Length = 144
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ IAE+ + + + KI+ L +A V RG
Sbjct: 2 MKISSRFSIAVHILSILKNNSSSICTSEFIAESVNTNPVVIRKIMSDLKRAEFVYVNRGP 61
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + ++IT+LDV A E+ + DCP+ + L VL +A +
Sbjct: 62 -GGAELLKDLNEITLLDVYHAVNVVEADKLFHIHEQPNPDCPIGANIQAVLEVVLVQAQS 120
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++E L S+++ NA
Sbjct: 121 AMEEVLKNITMENLFE---SLQEKINA 144
>gi|254471092|ref|ZP_05084495.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
JE062]
gi|211960234|gb|EEA95431.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
JE062]
Length = 140
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 1/125 (0%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
M A++ + I +++EA + K++Q L + G +++ RGR GG+ L I
Sbjct: 1 MLMAVNRNDKWTIDRLSEATNSGRPQVAKVVQILNRKGYIKSRRGRLGGLMLAHAPASIN 60
Query: 75 ILDVVKATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
I +++ E++F + ECFA S CPL G C L+ AL++F + L ++ ++ N
Sbjct: 61 IGKLIRNVEDNFALVECFACSPSKPCPLEGVCRFRGKLKHALDSFMEELDAINLTQIIEN 120
Query: 134 RSSIK 138
I+
Sbjct: 121 ADEIR 125
>gi|320332910|ref|YP_004169621.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
maricopensis DSM 21211]
gi|319754199|gb|ADV65956.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
maricopensis DSM 21211]
Length = 138
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ VL ++H D+ IA + + + + I+ L +AG++ T RG G L R
Sbjct: 8 AVHVLALISMHPDHARTSEAIAGSVGTNPVVVRNIIGLLRRAGLLRTQRGV-AGAVLTRT 66
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
D +T+LDV +A + CP+ L V A A + L Q ++
Sbjct: 67 PDAVTLLDVYRAVNPPEHLFRLHEQPNPQCPVGSHIQDTLEVVFGTAQRALEERLGQVTL 126
Query: 128 ECLVRN 133
++ +
Sbjct: 127 VDVMAD 132
>gi|168182103|ref|ZP_02616767.1| rrf2 family protein [Clostridium botulinum Bf]
gi|237793605|ref|YP_002861157.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
gi|182674586|gb|EDT86547.1| rrf2 family protein [Clostridium botulinum Bf]
gi|229263550|gb|ACQ54583.1| rrf2 family protein [Clostridium botulinum Ba4 str. 657]
Length = 143
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +++ L +AG+V + G
Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + DQIT+LDV +A E + + + S I+CP+ + + VL A
Sbjct: 60 TGGAYLLKDLDQITLLDVYRAVEVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQE 119
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A VL ++E +V R IKK
Sbjct: 120 AMEQVLENVTMEYIVTGIRKKIKK 143
>gi|148378286|ref|YP_001252827.1| transcriptional regulator [Clostridium botulinum A str. ATCC 3502]
gi|153933591|ref|YP_001382687.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|153936117|ref|YP_001386238.1| rrf2 family protein [Clostridium botulinum A str. Hall]
gi|153937936|ref|YP_001389653.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
gi|168177627|ref|ZP_02612291.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
gi|170754327|ref|YP_001779938.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
gi|226947508|ref|YP_002802599.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|148287770|emb|CAL81836.1| Rrf2-family transcriptional regulator [Clostridium botulinum A str.
ATCC 3502]
gi|152929635|gb|ABS35135.1| rrf2 family protein [Clostridium botulinum A str. ATCC 19397]
gi|152932031|gb|ABS37530.1| rrf2 family protein [Clostridium botulinum A str. Hall]
gi|152933832|gb|ABS39330.1| rrf2 family protein [Clostridium botulinum F str. Langeland]
gi|169119539|gb|ACA43375.1| rrf2 family protein [Clostridium botulinum B1 str. Okra]
gi|182670341|gb|EDT82315.1| rrf2 family protein [Clostridium botulinum NCTC 2916]
gi|226842307|gb|ACO84973.1| rrf2 family protein [Clostridium botulinum A2 str. Kyoto]
gi|295317743|gb|ADF98120.1| rrf2 family protein [Clostridium botulinum F str. 230613]
gi|322804550|emb|CBZ02101.1| rrf2 family transcriptional regulator, group III [Clostridium
botulinum H04402 065]
Length = 143
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 68/144 (47%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ + IA + + + + +++ L +AG+V + G
Sbjct: 1 MKISSRFSVAVHILSILSMEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + DQIT+LDV +A + + + + S I+CP+ + + VL A
Sbjct: 60 TGGAYLLKDLDQITLLDVYRAVDVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQE 119
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A VL ++E +V R IKK
Sbjct: 120 AMEQVLENVTMEYIVTGIRKKIKK 143
>gi|65321873|ref|ZP_00394832.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
str. A2012]
gi|228903025|ref|ZP_04067164.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
4222]
gi|228910330|ref|ZP_04074146.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
200]
gi|228917145|ref|ZP_04080703.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228923250|ref|ZP_04086540.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228929554|ref|ZP_04092573.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228935816|ref|ZP_04098628.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228941684|ref|ZP_04104231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228954776|ref|ZP_04116797.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228967601|ref|ZP_04128624.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228974611|ref|ZP_04135177.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228981206|ref|ZP_04141506.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
gi|228987757|ref|ZP_04147868.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|229048212|ref|ZP_04193781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
gi|229072011|ref|ZP_04205221.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
gi|229081759|ref|ZP_04214252.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
gi|229093603|ref|ZP_04224704.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
gi|229111969|ref|ZP_04241513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
gi|229124071|ref|ZP_04253263.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
gi|229129791|ref|ZP_04258758.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
gi|229141238|ref|ZP_04269777.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
gi|229147065|ref|ZP_04275425.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
gi|229152700|ref|ZP_04280887.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
gi|229158115|ref|ZP_04286184.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
gi|229180772|ref|ZP_04308110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
gi|229192705|ref|ZP_04319664.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
gi|229198656|ref|ZP_04325357.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
gi|228584815|gb|EEK42932.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
gi|228590795|gb|EEK48655.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
gi|228602750|gb|EEK60233.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
gi|228625344|gb|EEK82102.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
gi|228630763|gb|EEK87405.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
gi|228636453|gb|EEK92923.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
gi|228642279|gb|EEK98571.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
gi|228653707|gb|EEL09578.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
gi|228659373|gb|EEL15021.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
gi|228671533|gb|EEL26833.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
gi|228689812|gb|EEL43618.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
gi|228701604|gb|EEL54097.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
gi|228711170|gb|EEL63135.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
gi|228723199|gb|EEL74575.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
gi|228772031|gb|EEM20486.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228778406|gb|EEM26673.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
gi|228785014|gb|EEM33027.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228792092|gb|EEM39671.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228804896|gb|EEM51494.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228817896|gb|EEM63974.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228823873|gb|EEM69693.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228830133|gb|EEM75751.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228836456|gb|EEM81807.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228842563|gb|EEM87653.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228849282|gb|EEM94120.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
200]
gi|228856618|gb|EEN01139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
4222]
Length = 151
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S +K+
Sbjct: 128 AMENVLANVTVDQLVTNLKSKMKE 151
>gi|229059615|ref|ZP_04196993.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
gi|228719628|gb|EEL71227.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
Length = 143
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L ++G V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKIMSYLKQSGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++ L S+++ NA
Sbjct: 120 AMEEVLRNITMGQLFE---SLQQKMNA 143
>gi|300811188|ref|ZP_07091698.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300497832|gb|EFK32844.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 148
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 27/147 (18%), Positives = 61/147 (41%), Gaps = 6/147 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK T I +L+ A +A + + ++ K++ L GI+ + RG+
Sbjct: 1 MRDTKYT-VAIHILVMLATSP-RDLNSDDLARSVGTNASYIRKVMALLKDHGIIASQRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
G RL + + +++L++ +A + + + CP+ + + L +A
Sbjct: 59 -SGTRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQ 117
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
+ L + S+ ++ + +AG
Sbjct: 118 LKETLAKDSLADVIDRLKQAAEETDAG 144
>gi|228960772|ref|ZP_04122410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228798907|gb|EEM45883.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 151
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R GI +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGIHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S +K+
Sbjct: 128 AMENVLANVTVDQLVTNLKSKMKE 151
>gi|229011247|ref|ZP_04168440.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
gi|228750130|gb|EEL99962.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
Length = 143
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L ++G V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKIMSYLKQSGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDSHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGQL 133
>gi|229160930|ref|ZP_04288919.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
gi|228622498|gb|EEK79335.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
Length = 146
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMAYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQVVLEVILIQAQS 122
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++ L S+++ NA
Sbjct: 123 AMEEVLRNITMAQLFE---SLQEKMNA 146
>gi|118479660|ref|YP_896811.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
str. Al Hakam]
gi|228948230|ref|ZP_04110514.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229032151|ref|ZP_04188127.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
gi|229163495|ref|ZP_04291446.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
gi|229175215|ref|ZP_04302731.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
gi|229186740|ref|ZP_04313898.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
gi|118418885|gb|ABK87304.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
str. Al Hakam]
gi|228596753|gb|EEK54415.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
gi|228608351|gb|EEK65657.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
gi|228620064|gb|EEK76939.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
gi|228729157|gb|EEL80157.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
gi|228811588|gb|EEM57925.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
Length = 151
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 69 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S +K+
Sbjct: 128 AMENVLANVTVDQLVTNLKSKMKE 151
>gi|34557102|ref|NP_906917.1| hypothetical protein WS0691 [Wolinella succinogenes DSM 1740]
gi|34482817|emb|CAE09817.1| LIN1550 PROTEIN [Wolinella succinogenes]
Length = 137
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 11/138 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + YG+ L Y ++ P +IS+I++ I + +L +IL L KAG ++++RG +
Sbjct: 4 ISTKGIYGLGALYYLTLNLHKPSIQISEISQNTNIPQNYLEQILANLKKAGFLKSIRGPK 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L P +QI + D+++A E EC + L A + +
Sbjct: 64 GGYALAMPPEQIIVYDILEALEGGLCAIECRTDIE---------ALKLFWEDAGSKVRQI 114
Query: 122 LTQYSIECLVRNRSSIKK 139
S++ L+R I++
Sbjct: 115 F-SLSLKDLLRYEEMIQR 131
>gi|229087063|ref|ZP_04219215.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
gi|228696256|gb|EEL49089.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
Length = 143
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 5/140 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R D+IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 61 -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILMQAQE 119
Query: 117 AFFDVLTQYSIECLVRNRSS 136
A +VL +++ LV N S
Sbjct: 120 AMENVLANVTVQQLVTNLQS 139
>gi|144898449|emb|CAM75313.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 151
Score = 84.2 bits (207), Expect = 5e-15, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+K+ + I ++ A H P + +I I +L + LQ LV++G++ VRG +G
Sbjct: 5 SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRSGLLVGVRGPKG 64
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL R +I++ +VV+ + F +G+ + + D L
Sbjct: 65 GYRLARERRRISVGEVVRVVRAMETAEDPFQDVPAS--DLGAKVIRPMWGDLTEEIMDRL 122
Query: 123 TQYSIECLV 131
+ + L
Sbjct: 123 DAITFDDLC 131
>gi|256420420|ref|YP_003121073.1| BadM/Rrf2 family transcriptional regulator [Chitinophaga pinensis
DSM 2588]
gi|256035328|gb|ACU58872.1| transcriptional regulator, BadM/Rrf2 family [Chitinophaga pinensis
DSM 2588]
Length = 165
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L K +Y I + Y + D I+ +A ISE +L KI L K G+V + G +
Sbjct: 4 LGKGVEYAIHSMYYLVDVSRDSAMTIADMATFQNISESYLAKIFTRLQKGGLVRSALGVK 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-------CGLTSVLRKA 114
GG L RPA++I+ D+ A E + EC + C + + C + +V +A
Sbjct: 64 GGYVLARPAEEISFWDIAVAVEGRVSLFECH-DVRSGCVIGMTNGGQTGVCTVHAVFLEA 122
Query: 115 LNAFFDVLT-------QYSIECLVRNRS 135
L ++ ++ + +
Sbjct: 123 SQKLEAFLKTRNLRWLHTTLLDIIPDET 150
>gi|147677388|ref|YP_001211603.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
gi|146273485|dbj|BAF59234.1| predicted transcriptional regulator [Pelotomaculum
thermopropionicum SI]
Length = 123
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/111 (25%), Positives = 47/111 (42%), Gaps = 2/111 (1%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
+AE +SE + + KAG+V +VRG +GG L R +IT+ DV++A E
Sbjct: 1 MAERQNLSEHY-WSSYSHAEKAGLVRSVRGAQGGYILAREPAEITVGDVIRALEGPIAPV 59
Query: 90 ECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
C + C C +V + + VL S+ + ++
Sbjct: 60 SCVSEEAPGKCDEADYCITRTVWARVRDGIARVLDSISLADICLEAEKAQQ 110
>gi|153812075|ref|ZP_01964743.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174]
gi|149831730|gb|EDM86816.1| hypothetical protein RUMOBE_02471 [Ruminococcus obeum ATCC 29174]
Length = 149
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + V++ AI+ + + IAE+ + F+ +++ L KA ++ +V G
Sbjct: 1 MKYSTKLSDTVHVMVLIAINQEKSLSSASIAESVHTNPGFVRQLMLKLKKAELMTSVAGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PA+QIT+LD+ KA E + DC + + L +
Sbjct: 61 ARPS-LSKPAEQITLLDIYKAVEGDKPLLHLDTHTNPDCGVGINIQLSLQGFYNEIQKDA 119
Query: 119 FDVLTQYSIECLVR 132
+ + +++ ++
Sbjct: 120 EEKMNTITLQDIID 133
>gi|30264575|ref|NP_846952.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|42783680|ref|NP_980927.1| rrf2 family protein [Bacillus cereus ATCC 10987]
gi|47530042|ref|YP_021391.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49187398|ref|YP_030650.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|49481494|ref|YP_038559.1| Rrf2 family protein; transcriptional regulator [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52140996|ref|YP_085834.1| Rrf2 family protein; transcriptional regulator [Bacillus cereus
E33L]
gi|165871451|ref|ZP_02216098.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167635603|ref|ZP_02393915.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|167641682|ref|ZP_02399927.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|170688290|ref|ZP_02879500.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|170708378|ref|ZP_02898822.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|177653127|ref|ZP_02935414.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190566975|ref|ZP_03019891.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|196034358|ref|ZP_03101767.1| rrf2 family protein [Bacillus cereus W]
gi|196039250|ref|ZP_03106556.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|196044861|ref|ZP_03112095.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|206969656|ref|ZP_03230610.1| rrf2 family protein [Bacillus cereus AH1134]
gi|206977724|ref|ZP_03238615.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|217961991|ref|YP_002340561.1| rrf2 family protein [Bacillus cereus AH187]
gi|218235575|ref|YP_002369303.1| rrf2 family protein [Bacillus cereus B4264]
gi|218899663|ref|YP_002448074.1| rrf2 family protein [Bacillus cereus G9842]
gi|218905732|ref|YP_002453566.1| rrf2 family protein [Bacillus cereus AH820]
gi|222097974|ref|YP_002532031.1| rrf2 family protein; transcriptional regulator [Bacillus cereus Q1]
gi|225866481|ref|YP_002751859.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|227817288|ref|YP_002817297.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229601070|ref|YP_002868788.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|254687004|ref|ZP_05150862.1| RRF2 family protein [Bacillus anthracis str. CNEVA-9066]
gi|254724567|ref|ZP_05186350.1| RRF2 family protein [Bacillus anthracis str. A1055]
gi|254736610|ref|ZP_05194316.1| RRF2 family protein [Bacillus anthracis str. Western North America
USA6153]
gi|254741648|ref|ZP_05199335.1| RRF2 family protein [Bacillus anthracis str. Kruger B]
gi|254754754|ref|ZP_05206789.1| RRF2 family protein [Bacillus anthracis str. Vollum]
gi|254757586|ref|ZP_05209613.1| RRF2 family protein [Bacillus anthracis str. Australia 94]
gi|296504983|ref|YP_003666683.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|301056017|ref|YP_003794228.1| Rrf2 family protein; putative transcriptional regulator [Bacillus
anthracis CI]
gi|30259233|gb|AAP28438.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|42739609|gb|AAS43535.1| rrf2 family protein [Bacillus cereus ATCC 10987]
gi|47505190|gb|AAT33866.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49181325|gb|AAT56701.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|49333050|gb|AAT63696.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|51974465|gb|AAU16015.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
cereus E33L]
gi|164712748|gb|EDR18278.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167510389|gb|EDR85790.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|167529023|gb|EDR91778.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|170126753|gb|EDS95636.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|170667796|gb|EDT18549.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|172081651|gb|EDT66722.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190561966|gb|EDV15935.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|195992900|gb|EDX56859.1| rrf2 family protein [Bacillus cereus W]
gi|196024349|gb|EDX63022.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|196029877|gb|EDX68478.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|206735344|gb|EDZ52512.1| rrf2 family protein [Bacillus cereus AH1134]
gi|206744025|gb|EDZ55441.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|217066878|gb|ACJ81128.1| rrf2 family protein [Bacillus cereus AH187]
gi|218163532|gb|ACK63524.1| rrf2 family protein [Bacillus cereus B4264]
gi|218536473|gb|ACK88871.1| rrf2 family protein [Bacillus cereus AH820]
gi|218544856|gb|ACK97250.1| rrf2 family protein [Bacillus cereus G9842]
gi|221242032|gb|ACM14742.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
cereus Q1]
gi|225785815|gb|ACO26032.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|227005099|gb|ACP14842.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229265478|gb|ACQ47115.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|296326035|gb|ADH08963.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|300378186|gb|ADK07090.1| Rrf2 family protein; possible transcriptional regulator [Bacillus
cereus biovar anthracis str. CI]
gi|324328400|gb|ADY23660.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|326942291|gb|AEA18187.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 143
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 61 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 119
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S +K+
Sbjct: 120 AMENVLANVTVDQLVTNLKSKMKE 143
>gi|325284485|ref|YP_004257024.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
proteolyticus MRP]
gi|324316659|gb|ADY27770.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
proteolyticus MRP]
Length = 156
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 34/156 (21%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ ++ + ++ + A+ + + +L K L+ LV+AG++ G
Sbjct: 1 MKLSQGVEWCLHAVVLLGQLPQGTVLPRTLMAQHHGLPDDYLAKYLKQLVRAGVLMASTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL RPA++IT +V++A E C C + ++
Sbjct: 61 PRGGYRLARPAERITAWEVIEAIEGGQSFFHCQEIRQCGTGAARPAECTEPCAIHQMMHS 120
Query: 114 ALNAFFDVLTQYSIECLVR------NRSSIKKIFNA 143
A + D L+Q ++ LV+ + + + NA
Sbjct: 121 AFLTWKDQLSQTTVADLVQQVPEHVRERNRQGLLNA 156
>gi|182413404|ref|YP_001818470.1| BadM/Rrf2 family transcriptional regulator [Opitutus terrae PB90-1]
gi|177840618|gb|ACB74870.1| transcriptional regulator, BadM/Rrf2 family [Opitutus terrae
PB90-1]
Length = 151
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 52/129 (40%), Gaps = 2/129 (1%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
R + +L Y ++IA + + + + ++L L KAG+V +G GG
Sbjct: 4 NSRFAVSLHILAYLVYRAGAAVPSAEIARSVDTNPVVIRRLLSALAKAGLVTAHKGATGG 63
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
+ + IT+LDV +A E + S CP+ L VL +A
Sbjct: 64 FAIAAAPEAITLLDVYRAVEPAPDQGLRHFSPNPGCPVGARMERILHRVLGEAQAGMEAA 123
Query: 122 LTQYSIECL 130
L + ++ +
Sbjct: 124 LRRVTLADM 132
>gi|315924880|ref|ZP_07921097.1| Rrf2 family transcriptional regulator [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621779|gb|EFV01743.1| Rrf2 family transcriptional regulator [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 148
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YGI ++ + + ++ +AE IS+++L +I L ++G+V +V+
Sbjct: 1 MRISAKGRYGIASMIELSWMSREGHHVPVAILAENLGISKIYLEQIFSLLKRSGLVASVK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L +PA +I++ +++KA E +S P + S V R
Sbjct: 61 GAQGGYHLAKPASEISVYEILKAL-EQILFEPTESSVDERAPAIESVMQKDVFRPLDATI 119
Query: 119 FDVLTQYSIECLVRNR 134
+L + + L+ +
Sbjct: 120 ETLLAKIRLSDLLEDY 135
>gi|300312800|ref|YP_003776892.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
gi|300075585|gb|ADJ64984.1| transcription regulator protein [Herbaspirillum seropedicae SmR1]
Length = 147
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L++ D P +IA + + + + L +AGIV + +G
Sbjct: 1 MKRSDRLSIALHILLHMGQRTDAPMTSEEIAGWVNTNPVVIRRTFAGLREAGIVTSTKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
GG L RP ++I++L V +A E V C + + L V+ +A
Sbjct: 61 GGGWSLARPMEEISLLQVQQALGERL-VTLGAREESPGCLVEIAVNRALDDVMEEANRIL 119
Query: 119 FDVLTQYSIECLVRN 133
L ++ L ++
Sbjct: 120 DQRLAGITLAALAQD 134
>gi|209550103|ref|YP_002282020.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209535859|gb|ACI55794.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 162
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +V+T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL RP+ +I LD+V+A E C C C + ++ +
Sbjct: 61 PSGGYRLARPSSEINFLDIVEAVEGKARSFTCTNIRDNNPCRPAGYCDSKPCAVARIMWE 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A A+ D L + + LV
Sbjct: 121 ADEAWRDTLRRVRLSDLV 138
>gi|56965547|ref|YP_177281.1| hypothetical protein ABC3789 [Bacillus clausii KSM-K16]
gi|56911793|dbj|BAD66320.1| conserved hypothetical protein [Bacillus clausii KSM-K16]
Length = 142
Score = 84.2 bits (207), Expect = 6e-15, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 57/136 (41%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + + A +A + + + + +I L KAGI+E G
Sbjct: 1 MKISSRFSVAVHIGALLATERTAVLTSEWMAASVNTNPVVIRRISAQLKKAGIIEGRSG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG +L + D++T+LD +A + + + +C + + L +L KA
Sbjct: 60 TGGAKLAKDPDELTLLDFYQAVQVVADNELFHIHSEPNPNCYVGANIQGVLEVMLGKAQR 119
Query: 117 AFFDVLTQYSIECLVR 132
A +VL ++ ++
Sbjct: 120 AMEEVLASMTLADVLA 135
>gi|300813621|ref|ZP_07093949.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral
taxon 836 str. F0141]
gi|300512257|gb|EFK39429.1| transcriptional regulator, Rrf2 family [Peptoniphilus sp. oral
taxon 836 str. F0141]
Length = 135
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY R+ + A H + IAE C ++E F +IL+ L AGI RG
Sbjct: 1 MKITQETDYAFRITSFLASHENEIIGAPIIAEECSVTERFTLRILRKLNLAGITYAKRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV-----GSCGLTSVLRKAL 115
+GG L RP ++IT+ ++ A E + C A + C C S L
Sbjct: 61 KGGYGLKRPKEEITLYQIICAIEGPTVINRCLAHDQY-CNRKTIEGVKHCKFHSKLFHIQ 119
Query: 116 NAFFDVLTQYSIE 128
+ ++ +I+
Sbjct: 120 KSIINMFNSETID 132
>gi|170761689|ref|YP_001786255.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
gi|169408678|gb|ACA57089.1| Rrf2 family protein [Clostridium botulinum A3 str. Loch Maree]
Length = 126
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M TK T+Y + ++ Y H+D + +A IS +L KIL LVKA I+++ G
Sbjct: 1 MKYTKATNYALHIVAYIIKHDDGKHISLYPLANYFNISPSYLSKILTKLVKADIIQSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + + I++LDV+KA E + + C + K +C + + + +A +
Sbjct: 61 VNGGYILYKNKEDISLLDVIKAIEGNSSIFTCEMNEKSEC------KIQNAISEAEHIME 114
Query: 120 DVLTQYSIECLV 131
L I ++
Sbjct: 115 TYLKNKKIFEII 126
>gi|317969579|ref|ZP_07970969.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp.
CB0205]
Length = 142
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 8/141 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +T YG+ L+ A ++S IA+ I E +L +++ L K G++ + R
Sbjct: 1 MPFNAKTRYGLLALIELAGIQAQGGRLQVSVIAQRQGIPERYLEQMMTSLRKGGLLNSSR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG +L RPA I + + ++ E + L S+ +
Sbjct: 61 GPKGGYQLARPAADIRLSEALECLEGR------SEPQPPAQQSLEQQVLHSIGTQLQEQR 114
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
+L ++ L+ R ++ +
Sbjct: 115 LALLESTTLTDLLAQRDALLQ 135
>gi|283780983|ref|YP_003371738.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
6068]
gi|283439436|gb|ADB17878.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
6068]
Length = 175
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 10/133 (7%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ GI L+ + P ++A +S + K+L L +AG+V + G+ GG L
Sbjct: 8 VEIGIHTLLCL-LRTTQPVSSHELATYQGLSPTHVAKVLGRLQQAGVVASSPGKTGGYLL 66
Query: 67 CRPADQITILDVVKATEESFFVAECFA---------SHKIDCPLVGSCGLTSVLRKALNA 117
R A +I++ DVV A E + C + C + S +++A +A
Sbjct: 67 ARSAAEISLTDVVDAIEGPKPLFACRDIRFRCELLAGDPPEWATCSMCAVNSAMKRAESA 126
Query: 118 FFDVLTQYSIECL 130
DVL + ++ L
Sbjct: 127 MRDVLAKTTLRQL 139
>gi|261368478|ref|ZP_05981361.1| Rrf2 family protein [Subdoligranulum variabile DSM 15176]
gi|282569467|gb|EFB75002.1| Rrf2 family protein [Subdoligranulum variabile DSM 15176]
Length = 146
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L + ++ ++IAE+ + ++ +++ L KAG++ +G+
Sbjct: 1 MKYSTKLSDALHILAFLSMGASQRITSAKIAESVKTNPAYIRQLMSALKKAGLLTNTQGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
L R +IT+LDV +A E + + DC + L+ + ++ A
Sbjct: 61 ANA-ELTRNPCEITVLDVYRAIEGTKPLLHWDIDTNPDCGVGIYVQLSIADMYQEIQQAA 119
Query: 119 FDVLTQYSIECLVR 132
+ +++ ++
Sbjct: 120 EQKMQVITLQDILD 133
>gi|159901882|gb|ABX10616.1| transcriptional regulator [uncultured planctomycete 6N14]
Length = 141
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R Y ++ AI ND P I +I + + FL +IL+ L G V+++R
Sbjct: 1 MVISARVHYACVAMLELAIQNDEGSPVAIREITDRHGVPGPFLVQILRSLRALGWVQSIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG RL IT+LD+ +A C K + L A A
Sbjct: 61 GSQGGYRLSVDPATITLLDIAEAIGSQE--TGCRTEAKGT---PIAAMLQEQWDDAAEAS 115
Query: 119 FDVLTQYSIECLVRNRS 135
VL Q ++ LV
Sbjct: 116 RRVLGQATLSGLVERAQ 132
>gi|210610732|ref|ZP_03288592.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787]
gi|210152296|gb|EEA83303.1| hypothetical protein CLONEX_00782 [Clostridium nexile DSM 1787]
Length = 158
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR++ Y A S++A I E ++ KI + L +A I+ G
Sbjct: 19 MQLKITTDYAIRIVYYLACR-GEVITASELAYELKIPESYIPKITKKLKEANIITACEGI 77
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
+GG L + + I++ D++ +TE + + C C C + +L +
Sbjct: 78 KGGYSLVKKTEDISLFDIISSTEVTMKLNRCLEEDGF-CSRNATEHCKVHKILLDVQQTY 136
Query: 119 FDVLTQYSIECLVR 132
++L + +++
Sbjct: 137 DNLLKGIKVSEIIK 150
>gi|260753062|ref|YP_003225955.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552425|gb|ACV75371.1| transcriptional regulator, BadM/Rrf2 family [Zymomonas mobilis
subsp. mobilis NCIMB 11163]
Length = 135
Score = 83.8 bits (206), Expect = 7e-15, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
MHL+ TDY + VL H +AE + + K++ L A ++ ++R
Sbjct: 1 MHLSNLTDYAVVVLRQVVHHGAGAKCLTTLTMAEKTGLPLPTVQKLMGRLAAAHLLTSLR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L RPA++IT+ DVV+A E ++ C + + C CG+ +
Sbjct: 61 GMGGGFTLARPAEEITLADVVEAIEGPIAMSSC-DNKESLCKFSAECGMRPRWPEVNRTV 119
Query: 119 FDVLTQYSIECLV 131
+ L S++ L
Sbjct: 120 KNALESISLKSLA 132
>gi|313894737|ref|ZP_07828298.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon
137 str. F0430]
gi|312976646|gb|EFR42100.1| transcriptional regulator, Rrf2 family [Selenomonas sp. oral taxon
137 str. F0430]
Length = 149
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L+ + D ++ + + + +IL L +AG++ +RG
Sbjct: 1 MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRVMRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
R GG L RP +IT+ DV A E + + CP+ S + VL
Sbjct: 61 REGGAYLVRPLSEITLADVFHAVESLGGDTLFSFHENPNPACPVGRS--IHDVLDNRLAG 118
Query: 114 ALNAFFDVLTQYSIECLVRN-RSSIKK 139
A + ++ + + R IK+
Sbjct: 119 IQRAMERTMEGMTLADIAEDARQEIKR 145
>gi|310658027|ref|YP_003935748.1| transcriptional regulator [Clostridium sticklandii DSM 519]
gi|308824805|emb|CBH20843.1| putative transcriptional regulator [Clostridium sticklandii]
Length = 128
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 7/133 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M TK T+Y + ++ Y + N +S +A IS +L KIL LVKA ++++ G
Sbjct: 1 MKYTKATNYALHIMTYFVSQDGKENFSLSPLASHMNISPTYLSKILTQLVKANLIQSSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +P +I+ DV++A E S + C + C + +++A
Sbjct: 61 VNGGYSLRKPKSEISFYDVIQAIEGSNALFTCELNEDN------LCKIELAMQEAEEKMV 114
Query: 120 DVLTQYSIECLVR 132
L + I +
Sbjct: 115 TYLKEKLILDVAN 127
>gi|293396060|ref|ZP_06640341.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582]
gi|291421558|gb|EFE94806.1| Rrf2 family transcriptional regulator [Serratia odorifera DSM 4582]
Length = 157
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R I +L + R IA + + + +IL L AG+ + G+
Sbjct: 1 MSTSTRFAVAIHILTNITLFRGQAVRSEDIARSVNTNPTVVRRILGALADAGLTHSQMGQ 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L +PA +IT+ D+ A E+ + + +C + + L +
Sbjct: 61 GGGALLAKPASEITLRDIYHAVEDQPYFPLHRSKPNDECYIGHAIIPVLEGEFARISRHM 120
Query: 119 FDVLTQYSIECLV 131
L Q S+ +V
Sbjct: 121 EASLAQTSLADIV 133
>gi|225412244|ref|ZP_03761433.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme
DSM 15981]
gi|225042209|gb|EEG52455.1| hypothetical protein CLOSTASPAR_05466 [Clostridium asparagiforme
DSM 15981]
Length = 155
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ +DYG+R++ A+ + I QI E CI + F +KIL+ L AG+V+ RG
Sbjct: 24 MMITRESDYGVRIIR--ALKDGGLMTIGQICERECIPKQFAYKILKKLELAGLVQIKRGF 81
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L R +T+ DV++AT+E FF+ C A + C + L +
Sbjct: 82 GGGCALARDLADMTLYDVIRATDEEFFLTHCLQADFDCEYLAKSPCTIHRELARVQGILE 141
Query: 120 DVLTQYSIECLV 131
L S+ L+
Sbjct: 142 QELRARSMAELL 153
>gi|152993458|ref|YP_001359179.1| BadM/Rrf2 family transcriptional regulator [Sulfurovum sp. NBC37-1]
gi|151425319|dbj|BAF72822.1| transcriptional regulator, BadM/Rrf2 family [Sulfurovum sp.
NBC37-1]
Length = 132
Score = 83.8 bits (206), Expect = 8e-15, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ T+Y + L + D P Q+A I + FL KILQ + K GI+E+ +G
Sbjct: 1 MLLTRATEYALLSLDSIS-KADKPVGAEQLANELNIPKSFLAKILQNMAKQGILESRKGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
GG L + + ITI ++ A E +S+ CP G+C ++ +
Sbjct: 60 HGGFVLAQTINDITINSIIFAAEGKLPAVFDCSSYSETCPNGAIGTCVISPFIANFQTKI 119
Query: 119 FDVLTQYSIECLV 131
+ L ++ ++
Sbjct: 120 NNFLEGLTLGDIL 132
>gi|150395381|ref|YP_001325848.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150026896|gb|ABR59013.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
WSM419]
Length = 168
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 62/143 (43%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + I + + + + +AE +S +L K LQ + AG++E V G
Sbjct: 1 MKLGDGVEQAIHSVTMLSCLQPGSTLSAAALAEFHGVSTSYLLKHLQAMSGAGLLEAVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
+GG RL R ++IT+LD+V A E C + C C + + +A
Sbjct: 61 PKGGYRLARAPEKITLLDIVLAVEGPEPAFRCNEIRLRGPNPYTCKPAAPCTINVAMLRA 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSI 137
A+ L + ++ ++ + +I
Sbjct: 121 EQAYRAELRRVTVAGIIADLKTI 143
>gi|158313027|ref|YP_001505535.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EAN1pec]
gi|158108432|gb|ABW10629.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EAN1pec]
Length = 151
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R L+ A + + +A A + FL IL L ++G+V++ RG
Sbjct: 1 MQISARADYALRALLTLAASDGSLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +LCRPA++ITI V++AT+ + L V
Sbjct: 61 DGGYQLCRPAEEITIATVIRATDGPLASVRGRPPENAQYE-GAAKHLQDVWIAVRVNLRR 119
Query: 121 VLTQYSIECLVRNR 134
VL ++ + +
Sbjct: 120 VLESVTLADVASGK 133
>gi|269958756|ref|YP_003328543.1| putative cysteine desulfurase [Anaplasma centrale str. Israel]
gi|269848585|gb|ACZ49229.1| putative cysteine desulfurase [Anaplasma centrale str. Israel]
Length = 520
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+
Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFKPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
+ RG GG L P + IT+ ++ + + + C + P G C ++
Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
L SI + N
Sbjct: 121 EKYVMHYLKNTSILDVFNNN 140
>gi|87302927|ref|ZP_01085731.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701]
gi|87282423|gb|EAQ74382.1| hypothetical protein WH5701_07131 [Synechococcus sp. WH 5701]
Length = 144
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 65/141 (46%), Gaps = 6/141 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + +T+YG+ L+ A + +IA I E +L ++L L ++G+V ++R
Sbjct: 1 MSFSTKTEYGLVALIELAEVYSGGGVLQAGEIARRQGIPERYLEQMLTSLRRSGLVHSLR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG +L R + IT+ +V+ E C + LT++ +K A
Sbjct: 61 GPRGGYQLARSPELITVAEVLACLEGKAG-GACPDGKRST---TAFLVLTALEQKLEQAR 116
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
VL +++ L+ + + +
Sbjct: 117 ARVLAALTLKQLLEDTRARNQ 137
>gi|219883349|ref|YP_002478510.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
chlorophenolicus A6]
gi|219862194|gb|ACL42534.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
chlorophenolicus A6]
Length = 164
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ I + + D ++A +S +L K +Q L + G+V +++G
Sbjct: 4 MKLSGGVEWAIHCCVVLSRM-DGAVPAGKLAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L RPADQI+ILDVV+A E + C + C + C + +
Sbjct: 63 AGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIRQRGPLGTPPEKC--LTHCPIAIAMM 120
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A A+ D L + +I L
Sbjct: 121 TAETAWRDSLNKITIGDLAHQ 141
>gi|290962918|ref|YP_003494100.1| hypothetical protein SCAB_86361 [Streptomyces scabiei 87.22]
gi|260652444|emb|CBG75577.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 133
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 3/123 (2%)
Query: 14 LMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+M A+ + QIA++ + + K + L G++E RGR GG+ L
Sbjct: 1 MMRLAVVDGAELLTTRQIADSMNVPYTHMAKAIAQLQHLGVIEARRGRNGGLTLTDAGRA 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ ++V+ E+ C CPL G+C L LR+A AF+ L + ++ LV
Sbjct: 61 APVGNLVRTLEQDREAVVC--EGDTPCPLSGACRLRRALREAQEAFYSSLDKVTVGDLVA 118
Query: 133 NRS 135
+ +
Sbjct: 119 SPT 121
>gi|327191462|gb|EGE58484.1| putative transcriptional regulator protein [Rhizobium etli
CNPAF512]
Length = 162
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +V+T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL R + +I LD+V+A E C C C + ++ +
Sbjct: 61 PSGGYRLARASSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A+ + L + + LV
Sbjct: 121 ADEAWRETLRRVRLSDLVD 139
>gi|110597184|ref|ZP_01385473.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
13031]
gi|110341375|gb|EAT59840.1| Protein of unknown function UPF0074 [Chlorobium ferrooxidans DSM
13031]
Length = 140
Score = 83.4 bits (205), Expect = 8e-15, Method: Composition-based stats.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK TDY IR L+ A IA I FL ++LQ +++ ++ + G
Sbjct: 1 MKVLTKNTDYAIRALLALAAEKGSYLSAKAIASGQDIPYQFLRRLLQEMIRHNLIVSKEG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
RGG L + D IT+ +++ + V+EC +I C C L + +
Sbjct: 61 ARGGFMLEKDPDAITVTQLIEIFQGKVQVSECMFRKQI-CGNRSRCVLRHEIMRIEQVVQ 119
Query: 120 DVLTQYSIECLVRN 133
+ +I L+R+
Sbjct: 120 SEFEKVTIGKLLRD 133
>gi|239834897|ref|ZP_04683225.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
intermedium LMG 3301]
gi|239822960|gb|EEQ94529.1| rrf2 family protein (transcriptional regulator) [Ochrobactrum
intermedium LMG 3301]
Length = 156
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/139 (29%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 1 MH-LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
MH LTK+ YG++ L + A +++IA IS+ FL IL L GI+ + +
Sbjct: 1 MHMLTKKGKYGLKALAHLAALAPGESAFVAEIAARNNISKKFLDAILLELRNDGILRSKK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKA 114
G GG L +PA +ITI VV+ + C + DC +C + +
Sbjct: 61 GPGGGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCDDCEDHRACQVRRSMLLV 120
Query: 115 LNAFFDVLTQYSIECLVRN 133
A VL ++E RN
Sbjct: 121 REAIAGVLDTMTLEQFARN 139
>gi|256827446|ref|YP_003151405.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
DSM 15641]
gi|256583589|gb|ACU94723.1| transcriptional regulator, BadM/Rrf2 family [Cryptobacterium curtum
DSM 15641]
Length = 167
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 55/138 (39%), Gaps = 11/138 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + ++ + LMY + + I +AE IS +L K L KA IV + G
Sbjct: 1 MKFSISIEHALHCLMYMVDVEENKSIGIRDLAEFQGISASYLSKTFTRLAKAHIVLSSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC----------FASHKIDCPLVGSCGLTS 109
+GG RL R + I+ D+V+A E C +D C ++
Sbjct: 61 VKGGYRLARTPEAISFWDIVEAIEGKDPFFRCQEVRFGSPVLKELGALDANDKSPCLISG 120
Query: 110 VLRKALNAFFDVLTQYSI 127
V+ + L++ ++
Sbjct: 121 VMHQGEAEMKRYLSKKTL 138
>gi|30022586|ref|NP_834217.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|29898144|gb|AAP11418.1| RRF2 family protein [Bacillus cereus ATCC 14579]
Length = 145
Score = 83.4 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 3 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 62
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R ++IT+LDV KA E E + + I+CP+ + L +L +A
Sbjct: 63 -GGTTLARDLEEITLLDVYKAVEVVEEGQLFSFHENPNIECPVGANIQSVLEIILMQAQE 121
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S +K+
Sbjct: 122 AMENVLANVTVDQLVTNLKSKMKE 145
>gi|298246777|ref|ZP_06970582.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
gi|297549436|gb|EFH83302.1| transcriptional regulator, BadM/Rrf2 family [Ktedonobacter
racemifer DSM 44963]
Length = 154
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 8/132 (6%)
Query: 10 GIRVLMYCAI----HNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ L + A + D + +IAE+ + + L ++L + K +V RG G
Sbjct: 10 AVHTLTWMARRMANYGDQYDFSTSREIAESVNTNPVILRELLGMMEKQHLVRVQRGSNAG 69
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
+L R ++IT+L+V + + CP+ L + +A
Sbjct: 70 WKLARKPEEITLLEVYQVVKPHTMFTLHHTPPNPQCPIGCGIGSALQGIYANVQDAMEQE 129
Query: 122 LTQYSIECLVRN 133
L + +I ++R+
Sbjct: 130 LARTTIADVLRD 141
>gi|294497330|ref|YP_003561030.1| Rrf2 family transcriptional regulator [Bacillus megaterium QM
B1551]
gi|294347267|gb|ADE67596.1| transcriptional regulator, Rrf2 family [Bacillus megaterium QM
B1551]
Length = 143
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + + +P+ IA + + + + +++ L KAG+V G
Sbjct: 1 MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLVGVKAGA 60
Query: 61 RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + ++IT+LDV +A E + + + ++CP+ + L +L+++ +
Sbjct: 61 -GGAYLLKDLEEITLLDVYRAVAAVEEGELFQMHENPNVECPVGANIQSVLELILKRSQD 119
Query: 117 AFFDVLTQYSIECLVRN 133
A VL +++ LV +
Sbjct: 120 AMEQVLADVTMKELVTD 136
>gi|225570988|ref|ZP_03780011.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM
15053]
gi|225160450|gb|EEG73069.1| hypothetical protein CLOHYLEM_07092 [Clostridium hylemonae DSM
15053]
Length = 129
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 2/130 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ DY IR+L A+ + + + I + I E F +KI++ L KAGIVE RG
Sbjct: 1 MLLTRENDYAIRMLR--AMRDGQKHTMKDICQEEEIPEAFAYKIVRKLQKAGIVEVERGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R+ R ++T+ DVV A +E + C +C + L +
Sbjct: 59 AGGCRMGRSLTELTLYDVVAAVDEEPVIMPCLRKSCSRNTGGNACKVHMELAQIQRVLMR 118
Query: 121 VLTQYSIECL 130
L ++ +
Sbjct: 119 ELKARTLSEV 128
>gi|222475186|ref|YP_002563602.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
marginale str. Florida]
gi|222419323|gb|ACM49346.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
marginale str. Florida]
Length = 520
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+
Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFKPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
+ RG GG L P + IT+ ++ + + + C + P G C ++
Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
L SI + N
Sbjct: 121 ERYVMHYLKNTSILDVFNNN 140
>gi|160937566|ref|ZP_02084927.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC
BAA-613]
gi|158439635|gb|EDP17385.1| hypothetical protein CLOBOL_02457 [Clostridium bolteae ATCC
BAA-613]
Length = 135
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 37/131 (28%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ +DY IR++ A+ + + QI + + + F +KIL+ L ++G+V RG
Sbjct: 1 MMITRESDYAIRIIR--ALKDGELLPLEQICQRELVPKQFAYKILKKLERSGLVSIRRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNA 117
GG L R +T+LD++KA +E FF+ C + C S C + L +
Sbjct: 59 GGGCILNRSLADLTLLDIIKAADEEFFLNPCL-DSQYQCGYAASFDGCKVHCELARVQRV 117
Query: 118 FFDVLTQYSIE 128
+ L + S++
Sbjct: 118 LEEELKRTSLD 128
>gi|296124045|ref|YP_003631823.1| Rrf2 family transcriptional regulator [Planctomyces limnophilus DSM
3776]
gi|296016385|gb|ADG69624.1| transcriptional regulator, Rrf2 family [Planctomyces limnophilus
DSM 3776]
Length = 147
Score = 83.4 bits (205), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 3/138 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++K +Y +R + A + ++A + +L +LQ L +AGIV++ G G
Sbjct: 2 ISKTAEYALRTVACLASAREGIVLADELATRTQVPRRYLNTVLQDLGRAGIVKSKSGPGG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G L +++ILDV+ A + +C C L + L KA
Sbjct: 62 GHSLLVDPKELSILDVINAVSPLERIRQCPLGLP---SHTELCPLHAELDKAYAHTEKAF 118
Query: 123 TQYSIECLVRNRSSIKKI 140
++ ++ + + +
Sbjct: 119 AGVTLGQVLASTKGVIPL 136
>gi|157163963|ref|YP_001466494.1| transcriptional regulator superfamily [Campylobacter concisus
13826]
gi|112800651|gb|EAT97995.1| Rrf2 family protein [Campylobacter concisus 13826]
Length = 137
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I L+ + IA + + + + ++L L AG+V G
Sbjct: 1 MQVGIKFSTAIHALLCAKFFENEKVTSEFIAGSINTNPVIIRRLLGTLKAAGLVNVAAGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GGV L + I +L++ A E + + + CP+ G L+ +A A
Sbjct: 61 -GGVSLAKEPKDINLLEIFNAVNEKEKLFKIHSDSPKACPVGGRIEELLSGHFLRAQTAL 119
Query: 119 FDVLTQYSIECLVRN 133
+ L +++ L+
Sbjct: 120 ENELKNVTLQDLLDE 134
>gi|295702703|ref|YP_003595778.1| Rrf2 family transcriptional regulator [Bacillus megaterium DSM 319]
gi|294800362|gb|ADF37428.1| transcriptional regulator, Rrf2 family [Bacillus megaterium DSM
319]
Length = 143
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 68/137 (49%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + + +P+ IA + + + + +++ L KAG+V G
Sbjct: 1 MKISSRFTVAVHILSLIKVDSSHPSTSEWIASSVNTNPVVIRRVIGMLKKAGLVGVKAGA 60
Query: 61 RGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + ++IT+LDV +A E + + + ++CP+ + L +L+++ +
Sbjct: 61 -GGAYLLKDLEEITLLDVYRAVAAVEEGELFQMHENPNVECPVGANIQSVLELILKRSQD 119
Query: 117 AFFDVLTQYSIECLVRN 133
A VL +++ LV +
Sbjct: 120 AMEQVLADVTMKELVTD 136
>gi|254995024|ref|ZP_05277214.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
marginale str. Mississippi]
Length = 520
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+
Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFQPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
+ RG GG L P + IT+ ++ + + + C + P G C ++
Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
L SI + N
Sbjct: 121 ERYVMHYLKNTSILDVFNNN 140
>gi|157165239|ref|YP_001467135.1| Rrf2 family protein (putative transcriptional regulator)
[Campylobacter concisus 13826]
gi|112801375|gb|EAT98719.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter concisus
13826]
Length = 134
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 65/136 (47%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L+ + + P + I+ IS+ FL KILQ L K G++++ +G
Sbjct: 1 MLFTKASEYALLSLILISQKS-SPVDVDTISNELKISKSFLAKILQNLAKDGVLKSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
GG L + ++I +++ A + V EC +S + CP SC + S+
Sbjct: 60 NGGFALNGEPENLSIKKIIECAEKRELSVFECSSSA-LGCPSNKASSCQIWSMFSGLQGK 118
Query: 118 FFDVLTQYSIECLVRN 133
++L + +V+
Sbjct: 119 IDEMLDAIKLSDIVKK 134
>gi|268610344|ref|ZP_06144071.1| hypothetical protein RflaF_12696 [Ruminococcus flavefaciens FD-1]
Length = 145
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + + +L I ++ + ++ + + +L L GIVET +G
Sbjct: 1 MQITSKFTVAVHILTCIDIFGGQMRVTSDFLSGSTGVNAVIVRNVLGQLRNTGIVETRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
GG L + D+IT+ D+ KA + + + + DCP+ + + +
Sbjct: 61 -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNADCPVGRN--IHKAMDDRLEA 117
Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
A A + L ++ +V + I
Sbjct: 118 AQAALENELKSTTLAQVVADTRKI 141
>gi|198284817|ref|YP_002221138.1| BadM/Rrf2 family transcriptional regulator [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218667768|ref|YP_002427503.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
gi|198249338|gb|ACH84931.1| transcriptional regulator, BadM/Rrf2 family [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|218519981|gb|ACK80567.1| Rrf2 family protein [Acidithiobacillus ferrooxidans ATCC 23270]
Length = 146
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 4/129 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K ++Y +R L+Y A P I++ S + K+L+ L K GI+ +V+G
Sbjct: 1 MMLSKASEYALRSLIYLAAQPSGRPVLSRDISDYIGGSAPCVTKVLRCLAKRGILYSVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAF 118
+ GG L A+ + I+DV++ TE C H DC + C L +
Sbjct: 61 KGGGYMLRPGAESLNIIDVIEITEGRPLEIRCILGH--DCVRNTTLCPLHPQWEAIKSRE 118
Query: 119 FDVLTQYSI 127
L ++
Sbjct: 119 MGFLRGQTV 127
>gi|114328438|ref|YP_745595.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
gi|114316612|gb|ABI62672.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
Length = 143
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A H + P +A + + + + + L AG V + +G
Sbjct: 6 RLSRM----LHVLLHMARH-EGPMTSEALARMLGTNPVVVRRTMAGLRDAGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG + +P +++LDV +A A + DC + + L VLR A
Sbjct: 61 GGWVIAQPLKNVSLLDVHRAVGGPRLFAIGHENANADCAVEKAVNTALEGVLRDAEALLV 120
Query: 120 DVLTQYSIECLVRN 133
L S+ L R+
Sbjct: 121 ARLDSVSLAELARD 134
>gi|219883346|ref|YP_002478507.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
chlorophenolicus A6]
gi|219862191|gb|ACL42531.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
chlorophenolicus A6]
Length = 161
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ I + + D ++A +S +L K +Q L + G+V +++G
Sbjct: 4 MKLSGGVEWAIHCCVVLSRM-DGAVPAGKLAGLHDVSSSYLAKQMQALSRGGLVRSLQGH 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L RPADQI+ILDVV+A E + C + C + C + +
Sbjct: 63 AGGYVLTRPADQISILDVVQAVEGKQPLFVCTEIRQRGPLGTPPEKC--LTHCPIAIAMM 120
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A A+ D L + +I L
Sbjct: 121 TAETAWRDSLNKITIGDLAHQ 141
>gi|15807906|ref|NP_285565.1| hypothetical protein DR_A0242 [Deinococcus radiodurans R1]
gi|6460690|gb|AAF12395.1|AE001863_20 conserved hypothetical protein [Deinococcus radiodurans R1]
Length = 149
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ +Y +R + A +++A + +LFK++ LV+AG+V RG+ G
Sbjct: 16 FSQTAEYALRATVMLAEQ-GRALSAAELARLSEVPPPYLFKVMGQLVRAGVVTAQRGKNG 74
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL R A IT+L+VV A + + C C L L + L
Sbjct: 75 GYRLGRAAGDITVLEVVNAVDPLPRIRHCPLGKPE--HERALCPLHRQLDETYAQIEATL 132
Query: 123 TQYSIECLVR 132
S+ +
Sbjct: 133 GSRSLAEMTD 142
>gi|56416821|ref|YP_153895.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries]
gi|56388053|gb|AAV86640.1| hypothetical protein AM656 [Anaplasma marginale str. St. Maries]
Length = 520
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 55/140 (39%), Gaps = 6/140 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-----YPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M +T R Y + ++ P R S IA+ +SE +L +++ L G+V+
Sbjct: 1 MLMTTRLRYAVMFMVGLLNQGQPGGAFQPKRASSIADKQSLSEGYLERVITSLKNKGLVK 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SCGLTSVLRKA 114
+ RG GG L P + IT+ ++ + + + C + P G C ++
Sbjct: 61 STRGPGGGYSLGMPPEHITLDLLLDSVGDKVRMVRCGNEREGCLPFPGVRCNSHNLWDGI 120
Query: 115 LNAFFDVLTQYSIECLVRNR 134
L SI + N
Sbjct: 121 EKYVMHYLKNTSILDVFNNN 140
>gi|170696438|ref|ZP_02887565.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
C4D1M]
gi|170138643|gb|EDT06844.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia graminis
C4D1M]
Length = 151
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +QI++LDV +A +++ A C + + L ++ +A A
Sbjct: 61 GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGIIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L Q ++
Sbjct: 121 EASLAQRTLAD 131
>gi|300777967|ref|ZP_07087825.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
35910]
gi|300503477|gb|EFK34617.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
35910]
Length = 138
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 27/130 (20%), Positives = 56/130 (43%), Gaps = 5/130 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++KR Y ++ ++ A + N S IA+ I FL +IL L +A +V + +G+
Sbjct: 2 MSKRCKYALKAMVRLARNYNQGFLPTSVIAQDENIPRKFLEQILLELKRAKLVNSKQGKV 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L + +++++ D+ + + + C + DC C L L
Sbjct: 62 GGYYLLKSPNEVSLADIYRIFDGPIALTPCVSLNFYEACDDCVDEAVCYLRKELMIVREK 121
Query: 118 FFDVLTQYSI 127
+ + ++
Sbjct: 122 TRTSMMEATL 131
>gi|307319940|ref|ZP_07599363.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|306894480|gb|EFN25243.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
Length = 142
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 11 IRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ ++ + I++IA + + FL I+ L AG + + +G GG L RP
Sbjct: 1 MKAMVDLVQLQPGETAFITEIALRNNLPKKFLDTIMLELRNAGFLRSKKGPGGGYALARP 60
Query: 70 ADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
A +I + V++ + C + DC +C + + +A D+L
Sbjct: 61 ASEIRVGQVIRTLDGPLAPIRCASRTAYEVCDDCSDPETCHVRRSMIVVRDAVADILDNM 120
Query: 126 SIECLVRNRSS 136
++ +
Sbjct: 121 TLAQFAASERE 131
>gi|325130469|gb|EGC53229.1| rrf2 transcriptional regulator family protein [Neisseria
meningitidis OX99.30304]
Length = 130
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 2/114 (1%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
++S I+E IS +L ++ L +AG+VE++RG GG L PA +I I ++ A
Sbjct: 6 GAVKLSAISERQNISLSYLEQLFGKLRRAGLVESLRGPGGGYILAAPAARINIAQIIAAA 65
Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
E+ +C K +C C + D L +++ ++ +++
Sbjct: 66 EDRLDATQC--GSKANCHHGAPCLTHDLWENLNKTINDYLGSVTLQSIIEQKNN 117
>gi|117164456|emb|CAJ88001.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
23877]
Length = 145
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R + VL + A+ + QIA + + + + + L L KAG+V
Sbjct: 1 MSANSRMTIAVHVLTWIALVHGRGRDVVTSDQIATSVATNPVVIRRSLADLRKAGLVTVR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
+G G L R + I +LDV +A + A + CP+ L V A
Sbjct: 61 QGAGAGYTLARAPESIALLDVFQAVHDEPLFALHRSEPNQVCPVGRGIQPALRHVYTDAE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
AF L SI ++R+
Sbjct: 121 EAFRRELAGVSIADVLRD 138
>gi|311900466|dbj|BAJ32874.1| putative Rrf2 family transcriptional regulator [Kitasatospora setae
KM-6054]
Length = 167
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M ++ ++ + + A P +++A +S +L K+LQ L +AG++
Sbjct: 1 MRTSEGVEWALHCCLTLVWVGGAEAAPEPVPSARLAAMFELSPTYLNKVLQRLTRAGLLT 60
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGL 107
+V G RGGVRL R ++IT++DVV A E + C CG+
Sbjct: 61 SVSGPRGGVRLARAPERITVMDVVAAVEGPDPLFACAEIRQRGASAVGAGPREFARPCGV 120
Query: 108 TSVLRKALNAFFDVLTQYSIECL 130
+R+A A+ L+ ++ L
Sbjct: 121 AGAMRRAELAWRRELSAQTVADL 143
>gi|229096463|ref|ZP_04227435.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
gi|229115387|ref|ZP_04244795.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
gi|228668107|gb|EEL23541.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-3]
gi|228687025|gb|EEL40931.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
Length = 145
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 3 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 62
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 63 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQVVLEVILIQAQS 121
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL S+E L S+++ NA
Sbjct: 122 AMEEVLKNISMEQLFE---SLQEKMNA 145
>gi|307730053|ref|YP_003907277.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
CCGE1003]
gi|307584588|gb|ADN57986.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1003]
Length = 151
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +QI++LDV +A +++ A C + + L V+ +A A
Sbjct: 61 GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGVIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L Q ++
Sbjct: 121 EASLAQRTLAD 131
>gi|237734275|ref|ZP_04564756.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229382505|gb|EEO32596.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 131
Score = 83.0 bits (204), Expect = 1e-14, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDY IR+++Y AI D + +++E I + +FKI + L I+ G
Sbjct: 1 MQLKVSTDYAIRIVLYIAIKKD-IVQSKELSETLGIPQSTVFKIGKKLSDNEIISIATGI 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAF 118
+GG +L + I+I ++ E + + C K C +C + V F
Sbjct: 60 QGGFKLKKQPKDISIFSIIDIFEPTIRINSCLEEDKY-CSRFATETCPVRKVYCTMQKHF 118
Query: 119 FDVLTQYSIECLV 131
+ L + I L+
Sbjct: 119 EEYLKKIKILDLI 131
>gi|218462293|ref|ZP_03502384.1| iron-responsive transcriptional regulator [Rhizobium etli Kim 5]
Length = 89
Score = 82.7 bits (203), Expect = 1e-14, Method: Composition-based stats.
Identities = 56/89 (62%), Positives = 72/89 (80%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK+T+Y +R+LMYCA ++ +RI +IA+A +SELFLFKILQPL KAG+VETVRGR
Sbjct: 1 MRLTKQTNYAVRMLMYCAANDGQLSRIPEIAKAYGVSELFLFKILQPLSKAGLVETVRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
GGVRL +PA IT+ DVV+ TE+SF +A
Sbjct: 61 NGGVRLGKPAADITLFDVVRVTEDSFAMA 89
>gi|292654129|ref|YP_003534027.1| Uncharacterized protein family UPF0074 superfamily [Haloferax
volcanii DS2]
gi|291369713|gb|ADE01941.1| Uncharacterized protein family UPF0074 superfamily [Haloferax
volcanii DS2]
Length = 147
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ R VL A+ +D ++A + + + + ++L L +A +V++ RG GG
Sbjct: 4 SSRFVVATHVLTNLAVRSDERLSSDRLAWSVNTNPVVIRQLLCSLREADLVDSKRGPTGG 63
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
L D IT+ D+ +A E++ +C + L +L A+ A D
Sbjct: 64 FTLAHEPDAITLRDIYEAVEDAEPFCFHTNEPNDECTVGEHIQPVLGELLEPAIQAMLDE 123
Query: 122 LTQYSIECL 130
L ++ +
Sbjct: 124 LDSVTVADV 132
>gi|56698540|ref|YP_168916.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
gi|56680277|gb|AAV96943.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
Length = 172
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M T+ ++ A + D +AE + E +L K +Q L AGIVET RG
Sbjct: 1 MKHTEGLEWAAHACSLLAALPPDTSLPARLLAEFFDLPEPYLAKQMQKLSAAGIVETRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES------FFVAECFASHKIDCPLVGSCGLTSVLRK 113
RGG L R +I++L +V+A + + C S D + CG+ + +
Sbjct: 61 PRGGYALARAPAEISLLQMVQAIDGETRHFTCTELRRCGPSGVEDSQYLRPCGIARSMWR 120
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A+ L ++ L+R
Sbjct: 121 AEAAWRRELAGVTLADLLR 139
>gi|284042783|ref|YP_003393123.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Conexibacter woesei DSM 14684]
gi|283947004|gb|ADB49748.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
DSM 14684]
Length = 153
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + +TDY +R + A + + P + IA A I FL KIL L +AGIVE+ RG
Sbjct: 1 MRIGAKTDYALRAALELAANDGERPVKAEAIATAQQIPPRFLEKILNDLRRAGIVESRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L PAD+I + DV++A + H++ L +L A A
Sbjct: 61 VEGGHLLASPADEIAVADVIRAIDGPLANVSGKRPHELSYDGAAE-KLPELLVAARAALR 119
Query: 120 DVLTQYSIECLVRNR 134
DVL + ++ +V +
Sbjct: 120 DVLDRTTLADVVSGQ 134
>gi|213029354|ref|ZP_03343801.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 85
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + Y + ++ A++++ P ++ I+E IS +L ++ L K G+V +VRG
Sbjct: 1 MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE 83
GG L + A I + +V+
Sbjct: 61 PGGGYLLGKDAGSIAVGEVISGLM 84
>gi|90419967|ref|ZP_01227876.1| putative transcriptional regulator [Aurantimonas manganoxydans
SI85-9A1]
gi|90336008|gb|EAS49756.1| putative transcriptional regulator [Aurantimonas manganoxydans
SI85-9A1]
Length = 139
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++R Y IR L A P + IA I FL IL L +AG++ ++RG RG
Sbjct: 2 ISQRARYAIRSLRNIAPRA-APVSAAVIAVEEQIPRKFLEAILAELKQAGLLVSLRGARG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH----KIDCPLVGSCGLTSVLRKALNAF 118
G RL RP +QI+ DV++ + +A C + DC V SC + L +A
Sbjct: 61 GYRLARPGEQISFADVLRVVDGPLALAPCASRTAYRRCEDCRDVESCETRTALLAVRDAT 120
Query: 119 FDVLTQ 124
+L
Sbjct: 121 AAILEG 126
>gi|322382580|ref|ZP_08056458.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321153435|gb|EFX45842.1| hypothetical protein PL1_0849 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 148
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 46/134 (34%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L + L+ + +IA C + KI+ L KAG V+T G G
Sbjct: 6 LNSEFTIAVHSLVLLSHLPGQMATSGEIAANVCTHAARIRKIMGMLRKAGYVKTKEGFGG 65
Query: 63 GVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
G L D +T+ D+ + T S C CP+ + + + A
Sbjct: 66 GFLLNCDPDAVTLADIYRVTSAGSLKPYWCTGDKSQSCPVSSNMQDVMNRLFCDAEKHME 125
Query: 120 DVLTQYSIECLVRN 133
L ++ ++
Sbjct: 126 QYLAGRTLGDVLHE 139
>gi|229013707|ref|ZP_04170836.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
gi|229062189|ref|ZP_04199513.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
gi|229135339|ref|ZP_04264130.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
gi|229169232|ref|ZP_04296946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
gi|228614298|gb|EEK71409.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
gi|228648114|gb|EEL04158.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
gi|228717172|gb|EEL68848.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH603]
gi|228747629|gb|EEL97503.1| Transcriptional regulator, BadM/Rrf2 [Bacillus mycoides DSM 2048]
Length = 151
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 68
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R D+IT+LDV KA E E + + I+CP+ + L +L ++
Sbjct: 69 -GGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILIQSQE 127
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S IK+
Sbjct: 128 AMENVLANVTVQQLVTNLKSKIKE 151
>gi|190892504|ref|YP_001979046.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
gi|190697783|gb|ACE91868.1| putative transcriptional regulator protein [Rhizobium etli CIAT
652]
Length = 162
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +V+T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL R + +I LD+V+A E C C C + ++ +
Sbjct: 61 PSGGYRLARASCEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A+ + L + + LV
Sbjct: 121 ADEAWRETLRRVRLSDLVD 139
>gi|218896888|ref|YP_002445299.1| rrf2 family protein [Bacillus cereus G9842]
gi|218543446|gb|ACK95840.1| rrf2 family protein [Bacillus cereus G9842]
Length = 143
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLGNITMGQL 133
>gi|328541946|ref|YP_004302055.1| HTH-type transcriptional regulator NsrR [polymorphum gilvum
SL003B-26A1]
gi|326411696|gb|ADZ68759.1| HTH-type transcriptional regulator NsrR [Polymorphum gilvum
SL003B-26A1]
Length = 132
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
I IA+ C + ++Q L K G +++V+GR GG+ L R +I++ ++V E
Sbjct: 1 MSIDTIADRCRTGRPQVVHVVQILRKHGYIKSVQGRNGGIWLDRNPAEISLAEIVHLFES 60
Query: 85 SFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
+ ECF + C L +CG L +AL AF L +I L +++
Sbjct: 61 DLNLVECFEPKRTCRCTLQAACGFRRTLDRALQAFLAELEATTIADLAGETAAL 114
>gi|30261949|ref|NP_844326.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|47527212|ref|YP_018561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49184791|ref|YP_028043.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|49481167|ref|YP_036090.1| RRF2 family protein [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|52143498|ref|YP_083331.1| RRF2 family protein [Bacillus cereus E33L]
gi|165873201|ref|ZP_02217814.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167633141|ref|ZP_02391467.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|167638458|ref|ZP_02396735.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|170686336|ref|ZP_02877557.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|170706135|ref|ZP_02896597.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|177650797|ref|ZP_02933694.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190566252|ref|ZP_03019170.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|196036748|ref|ZP_03104139.1| rrf2 family protein [Bacillus cereus W]
gi|196041922|ref|ZP_03109210.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|218903070|ref|YP_002450904.1| rrf2 family protein [Bacillus cereus AH820]
gi|222095568|ref|YP_002529626.1| hypothetical protein BCQ_1908 [Bacillus cereus Q1]
gi|227815262|ref|YP_002815271.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229029646|ref|ZP_04185722.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
gi|229600425|ref|YP_002866321.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|254684513|ref|ZP_05148373.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
gi|254721270|ref|ZP_05183060.1| rrf2 family protein [Bacillus anthracis str. A1055]
gi|254734816|ref|ZP_05192528.1| rrf2 family protein [Bacillus anthracis str. Western North America
USA6153]
gi|254741217|ref|ZP_05198905.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
gi|254755471|ref|ZP_05207505.1| rrf2 family protein [Bacillus anthracis str. Vollum]
gi|254760007|ref|ZP_05212031.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
gi|301053482|ref|YP_003791693.1| RRF2 family protein [Bacillus anthracis CI]
gi|30256575|gb|AAP25812.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|47502360|gb|AAT31036.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49178718|gb|AAT54094.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|49332723|gb|AAT63369.1| conserved hypothetical protein, possible RRF2 family protein
[Bacillus thuringiensis serovar konkukian str. 97-27]
gi|51976967|gb|AAU18517.1| conserved hypothetical protein; possible RRF2 family protein
[Bacillus cereus E33L]
gi|164711075|gb|EDR16639.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167513759|gb|EDR89128.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|167531953|gb|EDR94618.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|170129137|gb|EDS98002.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|170669412|gb|EDT20154.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|172083258|gb|EDT68319.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190562387|gb|EDV16354.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|195990631|gb|EDX54608.1| rrf2 family protein [Bacillus cereus W]
gi|196027294|gb|EDX65913.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|218539939|gb|ACK92337.1| rrf2 family protein [Bacillus cereus AH820]
gi|221239626|gb|ACM12336.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|227004632|gb|ACP14375.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|228731650|gb|EEL82556.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1271]
gi|229264833|gb|ACQ46470.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|300375651|gb|ADK04555.1| conserved hypothetical RRF2 family protein [Bacillus cereus biovar
anthracis str. CI]
Length = 143
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGQL 133
>gi|289548069|ref|YP_003473057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Thermocrinis albus DSM 14484]
gi|289181686|gb|ADC88930.1| transcriptional regulator, BadM/Rrf2 family [Thermocrinis albus DSM
14484]
Length = 143
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ D + ++++ I FL KI LV+ I+++ +G GG P ++ITILDV+
Sbjct: 20 NRDRLVKSEEVSQVQNIPRPFLSKIFHKLVRERILKSYKGPTGGFTFAIPPEEITILDVI 79
Query: 80 KATEESFFVAEC-FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV----RNR 134
KA +E + + C + + C + + LT +I L ++R
Sbjct: 80 KALDEDYKLDYCALRPGRCEEWQTSPCNVHDKWVALREHVLEYLTTTTIAELAGVEDKHR 139
Query: 135 SSIK 138
+K
Sbjct: 140 KPVK 143
>gi|302875241|ref|YP_003843874.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
gi|307687906|ref|ZP_07630352.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
cellulovorans 743B]
gi|302578098|gb|ADL52110.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
Length = 132
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ +DY +R ++ A IAE+C I FL K+L+ L KA +V + RG
Sbjct: 1 MKITQESDYALRAVVNIAEKYPNKIEAKVIAESCDIPLRFLLKLLRKLTKAHVVRSYRGI 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFF 119
GG L + IT+ V++A E + +C + G C ++ LRK +
Sbjct: 61 NGGYALATNPEDITMASVIEAIEGPIILNKCIQDKELCSNNRKGKCNISMELRKIQESLL 120
Query: 120 DVLTQYSIECLV 131
L I L+
Sbjct: 121 KELRSRKISDLL 132
>gi|118477378|ref|YP_894529.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
str. Al Hakam]
gi|118416603|gb|ABK85022.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
str. Al Hakam]
Length = 164
Score = 82.7 bits (203), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 22 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 82 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 140
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 141 AMEEVLRNITMGQL 154
>gi|315612720|ref|ZP_07887631.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC
49296]
gi|315314830|gb|EFU62871.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis ATCC
49296]
Length = 145
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +++ A+ + D +A + ++ + + K L L KAG++ +V
Sbjct: 1 MQISSRFTIATHMMIIIALQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E +S + + +CP+ + + +VL
Sbjct: 60 GTGGTEIIKDLKDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHAVLDQKLF 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
A + L Q S+ +V + +
Sbjct: 118 DVQAAMENQLRQTSLAQVVADAQN 141
>gi|91782956|ref|YP_558162.1| BadM/Rrf2 family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91686910|gb|ABE30110.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
xenovorans LB400]
Length = 151
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLSMLAEAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R + IT+L+V +A +++ A C + + L ++ +A A
Sbjct: 61 GGGALLARAPEHITLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L ++
Sbjct: 121 EASLGARTLAD 131
>gi|167748199|ref|ZP_02420326.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662]
gi|167652191|gb|EDR96320.1| hypothetical protein ANACAC_02943 [Anaerostipes caccae DSM 14662]
Length = 184
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/146 (24%), Positives = 69/146 (47%), Gaps = 8/146 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + + L+ A D +AE+ + + + I L KAGI+ +++
Sbjct: 13 MRVSTQFTIAVHALIMIAYFPDIRVTSEMVAESVGNNPVIIRNIYGKLKKAGIL-SIQRG 71
Query: 61 RGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
G L + A++IT+ DV +A E + + + CP+ S L L++A+N
Sbjct: 72 TGATSLTKTANEITLWDVYQAVETDAVDEIFKFSDTLSGACPVGSSIKELLFIHLQEAVN 131
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
+ D L++ +IE L R I++ +N
Sbjct: 132 SLKDSLSKTTIEEL---RFEIERHYN 154
>gi|152976907|ref|YP_001376424.1| BadM/Rrf2 family transcriptional regulator [Bacillus cereus subsp.
cytotoxis NVH 391-98]
gi|152025659|gb|ABS23429.1| transcriptional regulator, BadM/Rrf2 family [Bacillus cytotoxicus
NVH 391-98]
Length = 143
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R D+IT+LDV KA E E + + ++CP+ + L +L +A
Sbjct: 61 -GGTSLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNVECPVGANIQSVLEIILIQAQE 119
Query: 117 AFFDVLTQYSIECLV 131
A VL +++ LV
Sbjct: 120 AMEHVLANVTVQQLV 134
>gi|254459475|ref|ZP_05072891.1| HTH-type transcriptional regulator NsrR [Rhodobacterales bacterium
HTCC2083]
gi|206676064|gb|EDZ40551.1| HTH-type transcriptional regulator NsrR [Rhodobacteraceae bacterium
HTCC2083]
Length = 115
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 56/96 (58%)
Query: 42 FKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
KI+ L +AG + T RGR GG RL +PA++I + DVV+ TE + ECF CPL
Sbjct: 1 MKIVHELGQAGYIVTQRGRGGGFRLAKPAEEIVVGDVVRLTEGPLNLVECFNLENNTCPL 60
Query: 102 VGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
+G C L+ L++A AF VL ++ + NRS +
Sbjct: 61 IGICKLSRSLQEATRAFMAVLDDLTLADIASNRSVL 96
>gi|229017253|ref|ZP_04174159.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
gi|229023426|ref|ZP_04179927.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228737874|gb|EEL88369.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228744043|gb|EEL94139.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
Length = 143
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHKQPNPDCPIGANIQVVLEVILIQAQS 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++ L S+++ NA
Sbjct: 120 AMEEVLRNITMGQLFE---SLQEKMNA 143
>gi|148379309|ref|YP_001253850.1| putative transcriptional regulator [Clostridium botulinum A str.
ATCC 3502]
gi|153932711|ref|YP_001383685.1| putative transcriptional regulator [Clostridium botulinum A str.
ATCC 19397]
gi|153936293|ref|YP_001387233.1| putative transcriptional regulator [Clostridium botulinum A str.
Hall]
gi|153940905|ref|YP_001390690.1| putative transcriptional regulator [Clostridium botulinum F str.
Langeland]
gi|168179993|ref|ZP_02614657.1| putative transcriptional regulator [Clostridium botulinum NCTC
2916]
gi|148288793|emb|CAL82877.1| putative transcriptional regulator [Clostridium botulinum A str.
ATCC 3502]
gi|152928755|gb|ABS34255.1| putative transcriptional regulator [Clostridium botulinum A str.
ATCC 19397]
gi|152932207|gb|ABS37706.1| putative transcriptional regulator [Clostridium botulinum A str.
Hall]
gi|152936801|gb|ABS42299.1| putative transcriptional regulator [Clostridium botulinum F str.
Langeland]
gi|182669084|gb|EDT81060.1| putative transcriptional regulator [Clostridium botulinum NCTC
2916]
gi|295318764|gb|ADF99141.1| putative transcriptional regulator [Clostridium botulinum F str.
230613]
gi|322805649|emb|CBZ03214.1| rrf2 family transcriptional regulator [Clostridium botulinum H04402
065]
Length = 137
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG
Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K
Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKL 120
Query: 119 FDVLTQYSIECLVRNRS 135
L + + ++
Sbjct: 121 VSELEAVNFQEILDKDR 137
>gi|239627234|ref|ZP_04670265.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517380|gb|EEQ57246.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 133
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 7/134 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ +DY +R++ A+ + I QI + + F +KIL+ L KAG+V RG
Sbjct: 1 MMITRESDYAVRMIR--ALKDGEQLTIGQICQKEQVPRQFAYKILKKLEKAGLVLIRRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP----LVGSCGLTSVLRKALN 116
GG L + D +T+LDV++AT+E FF+ C C +C + L +
Sbjct: 59 GGGCNLGQSLDVLTLLDVIRATDEEFFLNPCLREG-YRCEYADGSGHNCTVHCELARVQA 117
Query: 117 AFFDVLTQYSIECL 130
L ++ L
Sbjct: 118 ILERELKHRTLAEL 131
>gi|163942239|ref|YP_001647123.1| BadM/Rrf2 family transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|163864436|gb|ABY45495.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
weihenstephanensis KBAB4]
Length = 143
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R G+ +L AI + IA + + + + +I L +AG+V+ G+
Sbjct: 1 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITGMLKRAGLVDVQAGK 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L R D+IT+LDV KA E E + + I+CP+ + L +L ++
Sbjct: 61 -GGTTLARDLDEITLLDVYKAVEVVEEGHLFSFHENPNIECPVGANIQSVLEIILIQSQE 119
Query: 117 AFFDVLTQYSIECLVRN-RSSIKK 139
A +VL +++ LV N +S IK+
Sbjct: 120 AMENVLANVTVQQLVTNLKSKIKE 143
>gi|86742249|ref|YP_482649.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. CcI3]
gi|86569111|gb|ABD12920.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. CcI3]
Length = 151
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R L+ A N + +A A + FL IL L +AG+V++ RG
Sbjct: 1 MQISARADYALRALLTLAASNGRLVKGEALAAAQDLPLRFLENILTDLRRAGLVQSRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L P ++ITI V++AT+ + + L V
Sbjct: 61 DGGYQLSLPPERITIATVIRATDGPLASVRGRRPEDTNY-DGAAKHLQDVWIAVRVNLRR 119
Query: 121 VLTQYSIECLVRNR 134
VL ++ + +
Sbjct: 120 VLEAVTLADVASGQ 133
>gi|228920651|ref|ZP_04083995.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228839016|gb|EEM84313.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 164
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 22 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 82 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 140
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 141 AMEEVLRNITMGQL 154
>gi|206970723|ref|ZP_03231675.1| rrf2 family protein [Bacillus cereus AH1134]
gi|217959425|ref|YP_002337975.1| rrf2 family protein [Bacillus cereus AH187]
gi|218235411|ref|YP_002366638.1| rrf2 family protein [Bacillus cereus B4264]
gi|296502541|ref|YP_003664241.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|206734359|gb|EDZ51529.1| rrf2 family protein [Bacillus cereus AH1134]
gi|217065668|gb|ACJ79918.1| rrf2 family protein [Bacillus cereus AH187]
gi|218163368|gb|ACK63360.1| rrf2 family protein [Bacillus cereus B4264]
gi|296323593|gb|ADH06521.1| RRF2 family protein [Bacillus thuringiensis BMB171]
gi|326939570|gb|AEA15466.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 143
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGQL 133
>gi|296269083|ref|YP_003651715.1| BadM/Rrf2 family transcriptional regulator [Thermobispora bispora
DSM 43833]
gi|296091870|gb|ADG87822.1| transcriptional regulator, BadM/Rrf2 family [Thermobispora bispora
DSM 43833]
Length = 154
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 59/134 (44%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ R DY +R A D P + ++A+ + +L IL + +AG+V RG
Sbjct: 1 MRLSARVDYALRAAAELAAAGDGPTTVGELAQGQDMPPKYLENILLQMRRAGLVRGQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA+QIT+ DV++A + ++ L V +
Sbjct: 61 EGGYVLARPANQITLADVIRAVDGPLANVRGERPEEVGYTGAAH-ALQRVWIALRASERA 119
Query: 121 VLTQYSIECLVRNR 134
+L + ++E + +
Sbjct: 120 ILERVTLEHVAKGE 133
>gi|153011671|ref|YP_001372885.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
ATCC 49188]
gi|151563559|gb|ABS17056.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
ATCC 49188]
Length = 154
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L + A ++ IA IS+ FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALAHLAALEPGESAFVADIATQNNISKKFLDAILLELRNDGILRSKKGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNA 117
GG L +PA +ITI VV+ + C + DC +C + + A
Sbjct: 62 GGYSLSKPASEITIGQVVRVLDGPLAPIRCASRTAYEPCNDCVDHRACQVRRSMLLVREA 121
Query: 118 FFDVLTQYSIECLVRN 133
VL + ++E RN
Sbjct: 122 IAGVLDRMTLEQFTRN 137
>gi|296876096|ref|ZP_06900150.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
ATCC 15912]
gi|296432807|gb|EFH18600.1| Rrf2 family transcriptional regulator [Streptococcus parasanguinis
ATCC 15912]
Length = 149
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 32/148 (21%), Positives = 66/148 (44%), Gaps = 11/148 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R G VL+ A+ + +A + ++ + + K L L KAG++ RG
Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG L + AD+I++LD+ +A E + + + CP+ + + +VL
Sbjct: 61 -TGGAELAKAADKISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKI 140
A ++Q +++ +V + +
Sbjct: 118 DIQIAMEKEMSQTTLKDVVEDTQKRMNL 145
>gi|169350557|ref|ZP_02867495.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552]
gi|169292877|gb|EDS75010.1| hypothetical protein CLOSPI_01325 [Clostridium spiroforme DSM 1552]
Length = 146
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + +DY +A + ++ + + KIL L AG+VE RG
Sbjct: 1 MQISSRFTIAVHIFACIDTFKDDYKITSDFLAASVNVNPVIIRKILSQLKNAGLVEVKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
GG + + +QI D+ A E E+ + + CP+ + + ++L +
Sbjct: 61 -SGGATIAKELEQINFYDIYSAVECIENGELFHFHENPNSQCPVGRN--IHNILDGKLVQ 117
Query: 114 ALNAFFDVLTQYSIECLVRN 133
NA + L + ++ ++++
Sbjct: 118 VQNALENELKKITLADVIKD 137
>gi|87306783|ref|ZP_01088930.1| Transcriptional Regulator, BadM/Rrf2 family protein
[Blastopirellula marina DSM 3645]
gi|87290962|gb|EAQ82849.1| Transcriptional Regulator, BadM/Rrf2 family protein
[Blastopirellula marina DSM 3645]
Length = 142
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M+++ +T+Y ++ A + P R+ ++A I FL +IL L AG+V++ R
Sbjct: 1 MNISAKTEYACVAMIELAALYDSGDPVRVRELAATHSIPAHFLTQILLQLKGAGMVQSTR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG RL R +I+I D+ + E C A K L +A A
Sbjct: 61 GATGGYRLARDPSEISIYDIHRVIEGDSDQ-PCGALQKPTPAAAALKALC---CEAATAQ 116
Query: 119 FDVLTQYSIECLVRNRSS 136
++L+ ++ + S
Sbjct: 117 REILSAATLADMAEKAGS 134
>gi|226362111|ref|YP_002779889.1| Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
gi|226240596|dbj|BAH50944.1| putative Rrf2 family DNA-binding protein [Rhodococcus opacus B4]
Length = 160
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +++ ++ + V++ A + +D P + +A + + +L K LQ LV+AGI+ +V G
Sbjct: 1 MRMSRGVEWAMHVVLSLAWVDDDRPVSTAALARSYDLPAPYLNKQLQALVRAGILTSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSVLR 112
GG L R A I++LDVV A E + C + L C ++ +R
Sbjct: 61 AAGGFVLTRSAKHISVLDVVTAIEGAEEAFRCTEIRAQGVGADMPAGQLSMPCAVSMAMR 120
Query: 113 KALNAFFDVLTQYSIECL 130
KA A+ L S++ +
Sbjct: 121 KADLAWRRELAGQSVDDV 138
>gi|239616862|ref|YP_002940184.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
19.5.1]
gi|239505693|gb|ACR79180.1| transcriptional regulator, BadM/Rrf2 family [Kosmotoga olearia TBF
19.5.1]
Length = 144
Score = 82.3 bits (202), Expect = 2e-14, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + K Y +R+L+ +I + +I+ + + F KIL L KAG+V +RGR
Sbjct: 1 MLIQKTVRYALRILVKLSIE-NRALNSKEISLSENLDHGFTLKILYYLKKAGLVRAIRGR 59
Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG L + + ITI + +A + + +C C C + + N
Sbjct: 60 KGGYALAKNPEDITITKIFEAIPDVEERLIDC----DTSCKFHKECYVKDFW-ELTNHII 114
Query: 120 DV-LTQYSIECLVRNR 134
+ SI ++ N
Sbjct: 115 GYTFSNVSIANIINNN 130
>gi|218674482|ref|ZP_03524151.1| putative transcriptional regulator protein [Rhizobium etli GR56]
Length = 156
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 7 TDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
++ + A + +AE + + +L K LQ L +A +VET G GG R
Sbjct: 1 VEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVETTLGPSGGYR 60
Query: 66 LCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRKALNAFF 119
L R ++ L++V+A E C C C + ++ +A A+
Sbjct: 61 LARAPSEVNFLEIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWR 120
Query: 120 DVLTQYSIECLV 131
D L + + LV
Sbjct: 121 DTLRRVRLSDLV 132
>gi|254562344|ref|YP_003069439.1| Rrf2 family transcriptional regulator [Methylobacterium extorquens
DM4]
gi|254269622|emb|CAX25593.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
extorquens DM4]
Length = 150
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 15 MYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
M+ + +A+ IS L KI Q LV+AG+VE +GR GGVRL R A +I
Sbjct: 1 MHLTLAERRVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGRSGGVRLARDAREI 60
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ +V E V +C CPL+G C L A AFF L + ++ +V
Sbjct: 61 RLGRLVADLEGVGTVVDCRRD---PCPLLGRCRLKWAFDAAEQAFFLELDRLTLADVVAG 117
Query: 134 RS--SIKKIFN 142
+ +++ +F
Sbjct: 118 PTAAALRALFR 128
>gi|329945233|ref|ZP_08293064.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon
170 str. F0386]
gi|328529276|gb|EGF56197.1| transcriptional regulator, Rrf2 family [Actinomyces sp. oral taxon
170 str. F0386]
Length = 165
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K ++ L+ + + +A +S +L K LQ L AGIV +V G
Sbjct: 1 MQLPKGVEWAAHALVVLDVAGGRVVSSAGLAGVFDLSPTYLNKHLQKLAAAGIVASVAGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVLR 112
GG RL +PA ++++ DVV A + + +C K G C + +
Sbjct: 61 SGGFRLSQPAARVSLDDVVSALGSAAPLFQCNEIRCQGAFVDQKSRILASGLCSINRAMS 120
Query: 113 KALNAFFDVLTQYSIECLVR 132
A +A+ L SI L
Sbjct: 121 LAEDAWRASLAGTSIADLAA 140
>gi|331266849|ref|YP_004326479.1| Rrf2 family protein; transcriptional regulator,putative
[Streptococcus oralis Uo5]
gi|326683521|emb|CBZ01139.1| Rrf2 family protein; transcriptional regulator,putative
[Streptococcus oralis Uo5]
Length = 145
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 63/144 (43%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +++ A+ + + +A + ++ + + K L L KAG++ +V
Sbjct: 1 MQISSRFTIATHMMIIIAMQDTESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E +S + + +CP+ + + VL
Sbjct: 60 GTGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHGVLDQKLF 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
A + L Q S+ +V + +
Sbjct: 118 DVQAAMENQLRQTSLAQVVADAQN 141
>gi|260062075|ref|YP_003195155.1| rrf2 family protein [Robiginitalea biformata HTCC2501]
gi|88783637|gb|EAR14808.1| rrf2 family protein (putative transcriptional regulator)
[Robiginitalea biformata HTCC2501]
Length = 144
Score = 81.9 bits (201), Expect = 2e-14, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR ++Y A + + +IA+A F KILQ L + G+V++V+G
Sbjct: 2 FSKACEYGIRAVVYIAHKSLEGQRVSLKEIADAIDSPVAFTAKILQQLSRNGLVDSVKGA 61
Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + ++ + D+V + + C K C C + + +
Sbjct: 62 SGGFEMSEGRIREVRLADIVSVVDGNRVYEGCGLGLKK-CNEHKPCPVHWEFVEVRDRLK 120
Query: 120 DVLTQYSIECL 130
+L SI +
Sbjct: 121 ALLETTSIHDM 131
>gi|257457624|ref|ZP_05622791.1| Rrf2 family protein [Treponema vincentii ATCC 35580]
gi|257445010|gb|EEV20086.1| Rrf2 family protein [Treponema vincentii ATCC 35580]
Length = 141
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 38/142 (26%), Positives = 60/142 (42%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + L+ DY IAE+ ++ + + KIL L KAG+VET G
Sbjct: 1 MKISVRFTAAVHTLLCILYFEKDYRVTSDFIAESTGVNAVIIRKILLQLQKAGLVETAAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES---FFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
GG L + ++I +L + KA E V S CPL + L VL A
Sbjct: 61 V-GGSHLVKKPEEINLLSIYKAVNEDNVHRTVFSFHPSPNSQCPLGKNIHRILDPVLDNA 119
Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
A L + ++ ++ +
Sbjct: 120 QKALEVELQKTTLADMLSQLNE 141
>gi|75763691|ref|ZP_00743371.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74488818|gb|EAO52354.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 164
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 22 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 81
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 82 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 140
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 141 AMEEVLRNITMGQL 154
>gi|304394778|ref|ZP_07376676.1| BadM/Rrf2 family transcriptional regulator [Ahrensia sp. R2A130]
gi|303293077|gb|EFL87479.1| BadM/Rrf2 family transcriptional regulator [Ahrensia sp. R2A130]
Length = 129
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 6/133 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + L + A P Q+A + + + +IL L +A + + RGR
Sbjct: 1 MKTNSQLNVALHTLGHIAASAGEPMTSEQLASCAGTNPVVVRRILGVLRRADLCVSARGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L R +IT+ D+ A E +H C + G L L++A +
Sbjct: 61 SGGWTLTRGPAEITLGDIHAALAPP----ETEDAHTHTCKIAGRLDDRLDQALKRASRSM 116
Query: 119 FDVLTQYSIECLV 131
L + ++ LV
Sbjct: 117 RQELDRTTLADLV 129
>gi|325291884|ref|YP_004277748.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3]
gi|325059737|gb|ADY63428.1| HTH-type transcriptional repressor nsrR [Agrobacterium sp. H13-3]
Length = 167
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/140 (29%), Positives = 61/140 (43%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + I + A + + +AE +S +L K LQ L AGIV TV G
Sbjct: 1 MKLGDGVEQAIHSVGMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQLLSGAGIVSTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL R D+IT+LD+V A E C + CG+ + + K
Sbjct: 61 PKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNPLPGRYFTKPCGINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A+ L + SI ++ +
Sbjct: 121 AEKAYRAELAKTSIADILGD 140
>gi|289643651|ref|ZP_06475764.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of
Datisca glomerata]
gi|289506542|gb|EFD27528.1| transcriptional regulator, BadM/Rrf2 family [Frankia symbiont of
Datisca glomerata]
Length = 151
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R L+ A N + +A A + FL IL L ++G+V + RG
Sbjct: 1 MQISARADYALRALLTLAASNGDLVKGETLATAQDLPLRFLENILTDLRRSGLVRSRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RLCRPA++IT+ V++AT+ + + L V +
Sbjct: 61 DGGYRLCRPANEITVAMVIRATDGPLASVRGRRPEEAVYE-GAAKHLQEVWIAVRVSIRR 119
Query: 121 VLTQYSIECLV 131
VL + ++ +
Sbjct: 120 VLEEVTLADIA 130
>gi|146328986|ref|YP_001209737.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A]
gi|146232456|gb|ABQ13434.1| Rrf2 family protein [Dichelobacter nodosus VCS1703A]
Length = 141
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 66/135 (48%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +TK ++Y + + + + + +A+ I+ K+L+ L+K IV++VRG
Sbjct: 2 LRITKESEYAFLL-LSVLLSEESAQSAAVLAKKTGIAAPMASKVLKRLLKGDIVQSVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL + A+ IT L+VV E + EC +C L +C ++ ++ A
Sbjct: 61 YGGYRLAKAAETITALEVVAVIEGMPELVECV-DQNKNCDLSSNCPISPFWQQMNQAIET 119
Query: 121 VLTQYSIECLVRNRS 135
+L ++ + R+ +
Sbjct: 120 MLAAKTLADMQRDEN 134
>gi|291519431|emb|CBK74652.1| transcriptional regulator, BadM/Rrf2 family [Butyrivibrio
fibrisolvens 16/4]
Length = 144
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 64/142 (45%), Gaps = 6/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + VL+ ND +A + ++ + ++LQ L KA IV TV+
Sbjct: 1 MQISSRFTIAVHVLIAIETFKNDNKITSEFLASSANVNPTVIRRLLQQLKKAEIV-TVKR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
GG + + +IT+LDV A E E+ + + CP+ + + L +
Sbjct: 60 GSGGADIEKSLTEITLLDVYNAVEPVENGQLFHFHENPNELCPVGRNIHRIMDHRLEEIQ 119
Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
NA D + + +I ++ + + +
Sbjct: 120 NAMEDKMRRITIADVMADANKL 141
>gi|154174055|ref|YP_001408761.1| RRF2 family protein [Campylobacter curvus 525.92]
gi|112802637|gb|EAT99981.1| RRF2 family protein [Campylobacter curvus 525.92]
Length = 138
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L+ D IA + + + + K+ Q L KAG++E G
Sbjct: 1 MQVGTKFSVSIHILLSAEFFKDEKVTSEFIASSVGTNPVIIRKLTQLLKKAGLLEVRAGV 60
Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
GGV L + +QIT+LDV +A +E + + A CPL G G L S A NA
Sbjct: 61 -GGVNLAKKPEQITLLDVYQAVSDEEKNLFKIHAKSPAACPLGGKIGNLLNSHFLSAQNA 119
Query: 118 FFDVLTQYSIECLVRN 133
L + +++ L+
Sbjct: 120 MQKELGKVTLQDLLDE 135
>gi|65319235|ref|ZP_00392194.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
str. A2012]
Length = 147
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 123
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 124 AMEEVLRNITMGQL 137
>gi|293364946|ref|ZP_06611663.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC
35037]
gi|307703197|ref|ZP_07640143.1| transcriptional regulator family protein [Streptococcus oralis ATCC
35037]
gi|291316396|gb|EFE56832.1| Rrf2 family transcriptional regulator [Streptococcus oralis ATCC
35037]
gi|307623272|gb|EFO02263.1| transcriptional regulator family protein [Streptococcus oralis ATCC
35037]
Length = 145
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +++ A+ + D +A + ++ + + K L L KAG++ +V
Sbjct: 1 MQISSRFTIATHMMIIIAMQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + +I++LDV +A E +S + + +CP+ + + VL
Sbjct: 60 GTGGTEIIKDLQEISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHGVLDQKLF 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
A + L Q S+ +V + +
Sbjct: 118 DVQAAMENQLHQTSLAQVVADAQN 141
>gi|312881138|ref|ZP_07740938.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
DSM 12260]
gi|310784429|gb|EFQ24827.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
DSM 12260]
Length = 152
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+H ++ + ++ A + +AEA SE L K++Q L KAGI+ RG
Sbjct: 5 LHFSEAASLAVHGVLLLAASGGEHRTVRSLAEAVGASEAHLAKVVQRLGKAGILSCTRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGGV L RPA +IT+L+V +A E C + CP G+C +L + D
Sbjct: 65 RGGVFLARPAGEITLLEVYEAVEGPLDRGGCVLG-RSACP-FGACLFGGLLERVSGEVRD 122
Query: 121 VLTQYSIECLVRNR 134
L ++E ++R
Sbjct: 123 FLAATTLEDFWKSR 136
>gi|306820775|ref|ZP_07454400.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551165|gb|EFM39131.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 131
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 4/128 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +R+L Y + + S ++E I F KIL+ L GI + RG
Sbjct: 1 MRITQETDYALRILDYLSATDKEIVGASVLSEDLNIPVRFALKILRKLNLYGITKANRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV---GSCGLTSVLRKALNA 117
GG L + I VV+A E ++ +C + C +C + LR
Sbjct: 61 SGGYFLLMKPEDINYKMVVEAIEGEIYINKCLQD-RSCCNRRMKKDTCIINKNLRSIQEV 119
Query: 118 FFDVLTQY 125
L +Y
Sbjct: 120 LNKELEKY 127
>gi|228914539|ref|ZP_04078148.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228927012|ref|ZP_04090078.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228945562|ref|ZP_04107912.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|229090931|ref|ZP_04222155.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
gi|228692332|gb|EEL46067.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-42]
gi|228814080|gb|EEM60351.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar monterrey BGSC 4AJ1]
gi|228832747|gb|EEM78318.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228844858|gb|EEM89900.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length = 146
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|242372556|ref|ZP_04818130.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
M23864:W1]
gi|242349773|gb|EES41374.1| Rrf2 family transcriptional regulator [Staphylococcus epidermidis
M23864:W1]
Length = 142
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 66/135 (48%), Gaps = 5/135 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L I + + IA + + + + +++ L +AG +ET +G
Sbjct: 1 MKISSRFTVAVHILSLVHIERNQTLTSAYIAGSVNTNSVVIRRLISKLKQAGFLETHQG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG++L +P IT+LDV +A E E + + I+C + + L VL +A +
Sbjct: 60 SGGIQLLKPLTDITLLDVYRAVEVVEEGELFQMHEDTNINCVVGANIQSVLEIVLLRAQD 119
Query: 117 AFFDVLTQYSIECLV 131
A VL +++ +V
Sbjct: 120 AMETVLANVTMDDIV 134
>gi|168184147|ref|ZP_02618811.1| putative transcriptional regulator [Clostridium botulinum Bf]
gi|182672686|gb|EDT84647.1| putative transcriptional regulator [Clostridium botulinum Bf]
Length = 137
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG
Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K
Sbjct: 61 VKGGYALNKQPKDINLRDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRTLCKIQRKL 120
Query: 119 FDVLTQYSIECLVRNRS 135
L + + ++
Sbjct: 121 VSELEAVNFQEILDEDR 137
>gi|163857298|ref|YP_001631596.1| hypothetical protein Bpet2986 [Bordetella petrii DSM 12804]
gi|163261026|emb|CAP43328.1| unnamed protein product [Bordetella petrii]
Length = 148
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A D P +IA + + + + L K G V++ +G
Sbjct: 6 RLSRM----LHVLLHMA-RADQPMTSEEIARMLGTNAAVVRRTMAGLRKVGYVQSDKGHH 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG R+ R D IT+LDV +A A DC + + + LR+A
Sbjct: 61 GGWRMARGLDSITLLDVHRAVGGPRIFAIGADRENPDCAVERVVNDAIADALRQAEALLV 120
Query: 120 DVLTQYSIECL 130
L ++ L
Sbjct: 121 QRLGAVTLADL 131
>gi|302875321|ref|YP_003843954.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
gi|307688174|ref|ZP_07630620.1| transcriptional regulator, BadM/Rrf2 family protein [Clostridium
cellulovorans 743B]
gi|302578178|gb|ADL52190.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
cellulovorans 743B]
Length = 143
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/117 (22%), Positives = 52/117 (44%), Gaps = 5/117 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG++ ++ A ++ + I I E +SE +L +I L K GI+ +G
Sbjct: 1 MKISTKGIYGLKAIVDLACYSVNEVVTIKSICERQGLSERYLEQIFSLLRKNGIIVGRKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+GG L + ++T+ +++ A E C ++ L SV +
Sbjct: 61 SQGGYTLAKKPKELTVYEILTALEGELT---CRPKVDVNNDLDDIISF-SVWKVIDE 113
>gi|157827110|ref|YP_001496174.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
bellii OSU 85-389]
gi|157802414|gb|ABV79137.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
bellii OSU 85-389]
Length = 128
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 12 RVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ A + D P +++I+ IS +L +I L KA +V+ +RG GG L
Sbjct: 1 MAILEMASNVGDEPITLNEISLKQNISLNYLEQIFSKLKKANLVKAIRGPNGGYILIGKL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
++I I +++ A E+F + C+ +C C + + D S++
Sbjct: 61 EEIKISNIMDAVNENFIMTGCYKKSIKNCASNTIKCNSHKLWKGLGKHIRDYFENISVKD 120
>gi|296158734|ref|ZP_06841563.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
Ch1-1]
gi|295890939|gb|EFG70728.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
Ch1-1]
Length = 151
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQGGVPLSSEMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R + I++L+V +A +++ A C + + L ++ +A A
Sbjct: 61 GGGALLARAPEHISLLEVYRAVDDAQLFALHREEPNPACMVGRNIQGVLRGIIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L ++
Sbjct: 121 EASLGARTLAD 131
>gi|313122793|ref|YP_004033052.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312279356|gb|ADQ60075.1| Predicted transcriptional regulator [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 148
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 6/147 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK T I +L+ A +A + + ++ K++ L I+ + RG+
Sbjct: 1 MRDTKYT-VAIHILVMLATSP-RDLNSDDLAASVGTNASYIRKVMALLKDHEIIASQRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
G RL + + +++L++ +A + + + CP+ + + L +A
Sbjct: 59 -SGTRLLKRPEDLSLLEIYQAVNGDDVEIFQIHQNPNPTCPVGKNIKEAVFPFLDEAERQ 117
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
+ L + S+ ++ + +AG
Sbjct: 118 LKETLAKDSLADVIDRLKQAAEETDAG 144
>gi|159184340|ref|NP_353521.2| hypothetical protein Atu0493 [Agrobacterium tumefaciens str. C58]
gi|159139656|gb|AAK86306.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 167
Score = 81.9 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + I + A + + +AE +S +L K LQ L AGIV TV G
Sbjct: 1 MKLGDGVEQAIHSVSMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQSLSNAGIVTTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL R D+IT+LD+V A E C + CG+ + + K
Sbjct: 61 PKGGYRLARTTDKITLLDIVLAVEGPQPAFRCAEIRQRGPNPLPGRYFTKPCGINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A + L + SI ++ +
Sbjct: 121 AEKVYRAELAKTSIADILGD 140
>gi|323525697|ref|YP_004227850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
CCGE1001]
gi|323382699|gb|ADX54790.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp.
CCGE1001]
Length = 151
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L +AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGTPLSSDMIAGSVNTNPALIRRLLTMLAEAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +QI++LDV +A +++ A C + + L ++ +A A
Sbjct: 61 GGGALLARAPEQISLLDVYRAVDDAQLFALHREEPNPACMVGRNIQVVLRGIIDEAQQAM 120
Query: 119 FDVLTQYSIEC 129
L + ++
Sbjct: 121 EASLARRTLAD 131
>gi|229102555|ref|ZP_04233260.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
gi|228680877|gb|EEL35049.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-28]
Length = 145
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 3 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 62
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 63 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 121
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 122 AMEEVLRNITMGQL 135
>gi|83644269|ref|YP_432704.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
gi|83632312|gb|ABC28279.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
Length = 159
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 61/133 (45%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ L + DYG+ + ++ Q+A+ + + KI++ LV G+V + RG
Sbjct: 2 LRLARLADYGLLIASSLEEPGKALVKLDQVADQTKLPIPTVRKIMKLLVDGGVVHSERGV 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L A I+I +++A E + +C A ++ C ++ +C + S +
Sbjct: 62 KGGYCLSDAAYNISIARILRAVEGGVALTDCCAEERV-CDVMHACTVHSNWSVINQTVSE 120
Query: 121 VLTQYSIECLVRN 133
+ + ++ + R
Sbjct: 121 IFERLTLRDMSRR 133
>gi|159045131|ref|YP_001533925.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
gi|157912891|gb|ABV94324.1| transcriptional regulator [Dinoroseobacter shibae DFL 12]
Length = 156
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A D + IAE + + + ++L L +AG++ + +G
Sbjct: 23 MKRNSRLSLALHTLSHMAGEPDRMRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 82
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG RL RP IT+ DV A +E VA A C + ++SVL + +
Sbjct: 83 AGGWRLARPPQDITLADVYLALDERM-VATGNAEDVPACSIEHALHRRVSSVLEEIEESL 141
Query: 119 FDVLTQYSIECL 130
L + SI +
Sbjct: 142 VQRLRETSISEV 153
>gi|271970444|ref|YP_003344640.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
gi|270513619|gb|ACZ91897.1| transcriptional regulator protein-like protein [Streptosporangium
roseum DSM 43021]
Length = 181
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ RT Y +R A P +IA + I FL IL L +AG++ + RG
Sbjct: 1 MRISARTQYALRAATELAAAPPGPVPAEKIAVSQNIPRRFLDNILLQLRRAGLIHSQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA++IT+ DV+ E + ++ + P L V
Sbjct: 61 DGGYWLARPAEEITLADVIMVVEGNPEHSQHGGYPGVAGP------LADVWSLLREHEET 114
Query: 121 VLTQYSIECLVRN 133
+LT+ ++ + ++
Sbjct: 115 LLTEITLAHITKD 127
>gi|229109407|ref|ZP_04239002.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
gi|229178348|ref|ZP_04305717.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
gi|228605078|gb|EEK62530.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 172560W]
gi|228674033|gb|EEL29282.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock1-15]
Length = 147
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 124 AMEEVLRNITMGQL 137
>gi|154503942|ref|ZP_02041002.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149]
gi|153795369|gb|EDN77789.1| hypothetical protein RUMGNA_01768 [Ruminococcus gnavus ATCC 29149]
Length = 132
Score = 81.5 bits (200), Expect = 3e-14, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK DY IR++ A+ + +S+I E + +KI + L K+G +++ RG
Sbjct: 1 MLFTKECDYAIRIMR--ALSSGELISVSRICEMEHLPSAMTYKITRKLEKSGFLKSCRGT 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L +I++ D+ A + + EC C + + N
Sbjct: 59 NGGYALNLKLAEISLYDLCAAIDPDILLLECMKEGYPCSMNSPKNPCLVHHEFCRLQNML 118
Query: 119 FDVLTQYSIECL 130
+ Q S+ L
Sbjct: 119 VQEMKQKSLAEL 130
>gi|228952322|ref|ZP_04114410.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
gi|228807318|gb|EEM53849.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar kurstaki str. T03a001]
Length = 147
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 65 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEIILIQAQS 123
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 124 AMEEVLRNITMGQL 137
>gi|56696277|ref|YP_166634.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
gi|56678014|gb|AAV94680.1| Rrf2 family protein [Ruegeria pomeroyi DSS-3]
Length = 164
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 10 GIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
+ A + +A +SE +L K ++ L AG+ E V G RGG RL R
Sbjct: 11 ALHCAAVLAELPEGKVLSGRDLAALHGVSESYLLKHMRALTAAGVTEAVPGPRGGFRLAR 70
Query: 69 PADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCGLTSVLRKALNAFFDV 121
Q+++LDVV+A + C + C C + + A A+
Sbjct: 71 APRQVSLLDVVEAVDGPGPAFVCREIRRKGDVTSNDPCAYRKDCFIKRRMLSAEQAWRTA 130
Query: 122 LTQYSIECLVRNRSS 136
L ++ L+ + +
Sbjct: 131 LRGQTLADLMADARA 145
>gi|30019984|ref|NP_831615.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|228939070|ref|ZP_04101667.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar berliner ATCC 10792]
gi|228958230|ref|ZP_04119959.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228971948|ref|ZP_04132568.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228978558|ref|ZP_04138933.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
gi|229127271|ref|ZP_04256267.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
gi|229138649|ref|ZP_04267231.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
gi|229144560|ref|ZP_04272963.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
gi|229190044|ref|ZP_04317051.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
gi|29895529|gb|AAP08816.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|228593433|gb|EEK51245.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 10876]
gi|228638973|gb|EEK95400.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST24]
gi|228644768|gb|EEL01018.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST26]
gi|228656104|gb|EEL11946.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-Cer4]
gi|228781157|gb|EEM29360.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis Bt407]
gi|228787765|gb|EEM35724.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar thuringiensis str. T01001]
gi|228801439|gb|EEM48327.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228820598|gb|EEM66626.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar berliner ATCC 10792]
Length = 146
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|315651167|ref|ZP_07904198.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986]
gi|315486565|gb|EFU76916.1| FeS assembly SUF system regulator [Eubacterium saburreum DSM 3986]
Length = 130
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY +RV+ A+ + ++IA+ + + +K+L L+K+ +V ++RG
Sbjct: 1 MLITREMDYAVRVVR--ALKGNTKISATEIAKKEHLPQAITYKVLNSLLKSKLVGSMRGV 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
GG L T+ D+ A E + EC DC G C L + N+
Sbjct: 59 NGGYYLKCDLTCTTLYDICVALGEDMSITECIRDG-YDCVNNRCGECTLNREFNRIQNSL 117
Query: 119 FDVLTQYSIECLV 131
L +++ L+
Sbjct: 118 NRELQLTTLDKLL 130
>gi|56752461|ref|YP_173162.1| hypothetical protein syc2452_d [Synechococcus elongatus PCC 6301]
gi|81300274|ref|YP_400482.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|56687420|dbj|BAD80642.1| hypothetical protein [Synechococcus elongatus PCC 6301]
gi|81169155|gb|ABB57495.1| transcriptional regulator, BadM/Rrf2 family [Synechococcus
elongatus PCC 7942]
Length = 151
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 4/136 (2%)
Query: 3 LTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + +Y + L+ A N P +I Q+A+ I + +L ++L L + GIV +VRG
Sbjct: 8 LSGKCEYALLALIELARGHSNGEPQQIKQLADRQNIPDRYLEQLLATLRRGGIVRSVRGA 67
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG L R QI++ DVV + + + + + L + + A D
Sbjct: 68 RGGYLLAREPWQISMQDVVHCIDGTE--MQRTEAIDQQSVTIERQILVDINVELCKAVED 125
Query: 121 VLTQYSIECLVRNRSS 136
VL YS++ L+ R +
Sbjct: 126 VLAAYSLQDLLEIREN 141
>gi|228900538|ref|ZP_04064761.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
4222]
gi|228968842|ref|ZP_04129804.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790905|gb|EEM38544.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228859089|gb|EEN03526.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
4222]
Length = 146
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|296125727|ref|YP_003632979.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
DSM 12563]
gi|296017543|gb|ADG70780.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii
DSM 12563]
Length = 140
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + L+ D + I+E+ ++ + + IL L KA I+ TV+
Sbjct: 1 MKISSRFTIAVHTLLCILEFKDEKITSNFISESVQVNPVIIRNILIQLQKADII-TVKRG 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
GG+ L + + IT+LD+ A E + + + CP+ G+ L L
Sbjct: 60 TGGISLNKKTENITLLDIFNAVESLDEGKLFSFHENPNKKCPVGGNINKILQPKLDSVQY 119
Query: 117 AFFDVLTQYSIECL 130
A L + +++ +
Sbjct: 120 AMEKELKKTTLKDI 133
>gi|291532974|emb|CBL06087.1| Predicted transcriptional regulator [Megamonas hypermegale
ART12/1]
Length = 75
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + Y +R+++ A+++ P RI IAE IS+ +L +I+ L KAG V+++RG
Sbjct: 1 MKISTKGRYALRLMLDIALNDAKTPVRIKDIAERQQISDKYLEQIVSSLNKAGFVKSLRG 60
Query: 60 RRGGVRLCRP 69
+GG RL +
Sbjct: 61 PQGGYRLTKN 70
>gi|42781070|ref|NP_978317.1| rrf2 family protein [Bacillus cereus ATCC 10987]
gi|42736991|gb|AAS40925.1| rrf2 family protein [Bacillus cereus ATCC 10987]
Length = 143
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 ALEEVLRNITMGQL 133
>gi|157825855|ref|YP_001493575.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
akari str. Hartford]
gi|157799813|gb|ABV75067.1| Iron-sulfur cluster assembly transcription factor IscR [Rickettsia
akari str. Hartford]
Length = 128
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Query: 12 RVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ A + P +++I+ IS +L +I L KA +V+ +RG +GG L
Sbjct: 1 MAILEIATKSSAAPVTLNEISVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYVLIGNL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
++I I D++ A E+F + C+ C P C + + D SI+
Sbjct: 61 EEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTVKCNSHKLWKGLGKHIRDYFENISIKD 120
>gi|319956225|ref|YP_004167488.1| transcriptional regulator, badm/rrf2 family [Nitratifractor
salsuginis DSM 16511]
gi|319418629|gb|ADV45739.1| transcriptional regulator, BadM/Rrf2 family [Nitratifractor
salsuginis DSM 16511]
Length = 134
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ ++Y + L ++ P Q+A CI + FL KIL L K I+E+ RG
Sbjct: 1 MLLTRASEYALLSLDKI-RKSEQPIGSEQLARELCIPKSFLAKILHNLAKQEILESHRGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
+GG + DQI++ DV+ A E + +CP G C ++ L
Sbjct: 60 QGGFTIKAGMDQISVYDVILAAEGKSPAVFDCTQYAENCPNGSIGGCAISPFLATFQGKI 119
Query: 119 FDVLTQYSIECL 130
D L + +++ L
Sbjct: 120 DDFLNELTLDQL 131
>gi|226357828|ref|YP_002787568.1| transcriptional regulator,Rrf2 family [Deinococcus deserti VCD115]
gi|226320071|gb|ACO48064.1| putative transcriptional regulator,Rrf2 family [Deinococcus deserti
VCD115]
Length = 138
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 3/123 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ VL ++ D IA + + + + ++ L +AG+++T +G G L R
Sbjct: 8 AVHVLALINMYPDSARTSEDIAASIGTNPVVVRNVIGHLRRAGLLDTRQGV-AGAHLTRA 66
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
IT+LDV +A V + CP+ LT V +A A L ++
Sbjct: 67 PRDITLLDVYRAVNAPASVFKLHEQPNPRCPVGSRIQGSLTQVFGEAQGALEAHLASLTL 126
Query: 128 ECL 130
E +
Sbjct: 127 EDV 129
>gi|300117525|ref|ZP_07055312.1| rrf2 family protein [Bacillus cereus SJ1]
gi|298725060|gb|EFI65715.1| rrf2 family protein [Bacillus cereus SJ1]
Length = 143
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL +++ L S+++ NA
Sbjct: 120 AMEEVLRNITMDQLFE---SLQEKMNA 143
>gi|256389588|ref|YP_003111152.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Catenulispora acidiphila DSM 44928]
gi|256355814|gb|ACU69311.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
acidiphila DSM 44928]
Length = 151
Score = 81.5 bits (200), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/111 (31%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
H D +AEA + + K++ L G+V+ RGR GG+ L ++ VV
Sbjct: 25 HPDELPTTRGVAEAMGAASTHMAKVVGKLQHLGLVQARRGRGGGLVLTPAGRVASVGAVV 84
Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+ E S +A C CPL +C L S LR A AF+ L Q ++E +
Sbjct: 85 RTFEGSGDLAACVDGEDP-CPLNAACRLRSALRAAQEAFYASLDQLTVEDV 134
>gi|52082199|ref|YP_080990.1| putative transcriptional regulator [Bacillus licheniformis ATCC
14580]
gi|52787590|ref|YP_093419.1| YwnA [Bacillus licheniformis ATCC 14580]
gi|319648073|ref|ZP_08002290.1| YwnA protein [Bacillus sp. BT1B_CT2]
gi|52005410|gb|AAU25352.1| putative transcriptional regulator [Bacillus licheniformis ATCC
14580]
gi|52350092|gb|AAU42726.1| YwnA [Bacillus licheniformis ATCC 14580]
gi|317389708|gb|EFV70518.1| YwnA protein [Bacillus sp. BT1B_CT2]
Length = 133
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 5/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L A + IA + + + + +++ L KAGI+ + G
Sbjct: 2 VNTRLSVAIHILSLIAANPRE--SSEMIAGSVNTNPVVIRRMISQLKKAGILTSRPGV-A 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFD 120
G L R + I++LD+ +A + + +CP+ T A +
Sbjct: 59 GASLKRDPEDISLLDIYRAVQPHEELFAIHDKPNPNCPVGRQIQTTLDQTFHSVQQAMEN 118
Query: 121 VLTQYSIECLV 131
L S++ ++
Sbjct: 119 ELASKSLKDVL 129
>gi|284036740|ref|YP_003386670.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
74]
gi|283816033|gb|ADB37871.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
74]
Length = 153
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++K + Y IR L Y A+ + N+I ++A + + FL KI+Q LV+ I+ + +G
Sbjct: 2 ISKTSGYAIRGLAYLALKSTAVNKIGVHELAAELNVPQPFLGKIMQGLVRRDIISSTKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG I+DVV A + CF +C C L + ++
Sbjct: 62 NGGFFTNERTLTTPIIDVVDAIDGLGMFRRCFLGL-PECNSEKPCPLHQHVIGFRDSLQH 120
Query: 121 VLTQYSIECLVRN 133
L ++ +VR+
Sbjct: 121 SLETLTVHDMVRD 133
>gi|332667399|ref|YP_004450187.1| BadM/Rrf2 family transcriptional regulator [Haliscomenobacter
hydrossis DSM 1100]
gi|332336213|gb|AEE53314.1| transcriptional regulator, BadM/Rrf2 family [Haliscomenobacter
hydrossis DSM 1100]
Length = 138
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 3/138 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K Y IR ++Y A H + +I EA + FL K+LQ L + ++ + +G
Sbjct: 2 FSKSCQYAIRAVLYLAEHGKEGQCVGVKEITEALEVPGPFLAKLLQQLSRNQLIGSTKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + ++ V++ + C C C L
Sbjct: 62 HGGFCMSPKHLEAPLIMVIECIDGPEVFTSCVLGL-PACNAANPCYLHHQSLAYKQGMLK 120
Query: 121 VLTQYSIECLVRNRSSIK 138
+L +I + R ++
Sbjct: 121 ILKDKTIAEVARQVPELR 138
>gi|295705225|ref|YP_003598300.1| probably rrf2 family transcriptional regulator [Bacillus megaterium
DSM 319]
gi|294802884|gb|ADF39950.1| Transcriptional regulator, probably rrf2 family [Bacillus
megaterium DSM 319]
Length = 139
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L++ A D+ IA C + + KI+ L K +V T G G
Sbjct: 1 MNSEFTIAVHSLVFLANLPDHRASSESIAYNICTNPARVRKIMSTLRKNNLVRTKEGLGG 60
Query: 63 GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFF 119
G L +I++ + + + C DC + + + ++ +
Sbjct: 61 GYTLGCSPAEISLGVIYRVISTGTLKPHWCSGDPDADCIVKSNIQTVMDDIFTESEQSVI 120
Query: 120 DVLTQYSIECLVRN 133
L Q +IE +++
Sbjct: 121 RHLDQITIEDVLKK 134
>gi|209547809|ref|YP_002279726.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209533565|gb|ACI53500.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 166
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I + A + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKMSDGVEQAIHSVAMLAGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL + ++I++LD++ A E C + D C +++ + +
Sbjct: 61 PRGGYRLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRLFAKPCNISAAMLR 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + SI L
Sbjct: 121 AERVYRAELAKTSIADL 137
>gi|309799014|ref|ZP_07693270.1| Rrf2 family protein [Streptococcus infantis SK1302]
gi|308117364|gb|EFO54784.1| Rrf2 family protein [Streptococcus infantis SK1302]
Length = 145
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 30/147 (20%), Positives = 63/147 (42%), Gaps = 11/147 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQISSRFTIATHMLIIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + + I++LDV +A E ++ + + CP+ + + VL +
Sbjct: 60 GTGGAEIIKDLEDISLLDVYQAVECLGKTGQLFSFHDNPNPACPVGSN--IHGVLDEKLQ 117
Query: 114 -ALNAFFDVLTQYSIECLVRNRSSIKK 139
A L+Q S+ +V + S K
Sbjct: 118 KIQLAMEQELSQTSLAQVVADAESRIK 144
>gi|313672780|ref|YP_004050891.1| transcriptional regulator, badm/rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
gi|312939536|gb|ADR18728.1| transcriptional regulator, BadM/Rrf2 family [Calditerrivibrio
nitroreducens DSM 19672]
Length = 144
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K DY IR++ Y + D ++ +I+E IS+ KIL L K GI++T G+ GG+
Sbjct: 6 KEVDYAIRIIAYL-LGKDNLVKMEEISEKLFISQPNTIKILHKLSKCGIIKTKTGKNGGI 64
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
L + ++I D++ + C + C L C +T + + L
Sbjct: 65 ILKKEVIDLSIYDILTCMGFEAEINVCV-NIPESCKLNPICSITHFFAEIQYDVIERLKN 123
Query: 125 YSIECLVRNRSSIKKI 140
I+ + + ++ KI
Sbjct: 124 AKIKDFIFDDKALSKI 139
>gi|226948610|ref|YP_002803701.1| putative transcriptional regulator [Clostridium botulinum A2 str.
Kyoto]
gi|226843148|gb|ACO85814.1| putative transcriptional regulator [Clostridium botulinum A2 str.
Kyoto]
Length = 137
Score = 81.1 bits (199), Expect = 4e-14, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV+++ + I+E + FL K+L+ L K+ IV + RG
Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSRIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K F
Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKF 120
Query: 119 FDVLTQYSIECLVRNRS 135
L + + ++
Sbjct: 121 VSELEAVNFQEILDKDR 137
>gi|255262381|ref|ZP_05341723.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
R2A62]
gi|255104716|gb|EET47390.1| transcriptional regulator, BadM/Rrf2 family [Thalassiobium sp.
R2A62]
Length = 134
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A + IA + + + ++L L +AG++ + +G
Sbjct: 1 MKRNSRLSLALHTLSHMAGDPSKTRTSADIANHAGTNPVVVRRVLGKLREAGMLTSEKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG +L R + IT+ DV A +ES E + C + +T V+R +
Sbjct: 61 AGGWKLARAPETITLADVYLALDESLIATE-TDNPVSSCSVENALHHRVTGVMRDIEQSL 119
Query: 119 FDVLTQYSIECL 130
+ L + ++ +
Sbjct: 120 IERLGETTLSDV 131
>gi|328886610|emb|CCA59849.1| Rrf2 family transcriptional regulator [Streptomyces venezuelae ATCC
10712]
Length = 160
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ ++ + + + P +++AE +S +L K +Q L +AG+V +V+G+
Sbjct: 1 MKLSGGVEWALHCCVVLTAAS-RPVPAARLAELHDVSPSYLAKQMQALSRAGLVRSVQGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L RPA +IT+LDVV+A + C A+ C +C + +
Sbjct: 60 TGGYVLTRPAVEITLLDVVQAVDGPDPAFVCTEIRQRGPLATPPEKC--TKACPIARAMG 117
Query: 113 KALNAFFDVLTQYSIECLVR 132
A A+ L +I LV
Sbjct: 118 AAEAAWRASLAATTIADLVA 137
>gi|169805235|gb|ACA83733.1| putative transcriptional regulator [Rhodothermus marinus]
Length = 150
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + + A N + +++ S L +I+ L AG+ + +RG
Sbjct: 8 ISLSGRQALAAMQVLAQQNHGRFVPVRRLSRMIGASPHTLARIMLRLTAAGLTDALRGPG 67
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GGVRL RPA +IT+ ++++ + + C + C C L ++ +
Sbjct: 68 GGVRLARPAHEITLFEILQEIDGPEVLNRCILGLGV-CNEARPCPLHAIWFPCRQQLRQM 126
Query: 122 LTQYSIECLVRNRSS 136
L + ++ L+ ++
Sbjct: 127 LAETTLADLIHPSNN 141
>gi|210614867|ref|ZP_03290366.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787]
gi|210150509|gb|EEA81518.1| hypothetical protein CLONEX_02580 [Clostridium nexile DSM 1787]
Length = 136
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK DY IR++ A+ + +S I A + +KI + L K G++++ RG
Sbjct: 4 MLFTKECDYAIRIMR--ALSDGELVSVSNICAAEQLPSAMTYKITRKLEKQGLLKSCRGT 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118
GG L R +I++ D+ A + + EC H C + + +
Sbjct: 62 NGGYCLNRTLSEISLYDICAAVDPDILLLECMKDGYHCSMNNQQKPCLVHREFCRLQSML 121
Query: 119 FDVLTQYSIECL 130
+ Q S+ L
Sbjct: 122 LQEMRQKSLSEL 133
>gi|315222502|ref|ZP_07864391.1| Rrf2 family protein [Streptococcus anginosus F0211]
gi|315188188|gb|EFU21914.1| Rrf2 family protein [Streptococcus anginosus F0211]
Length = 149
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/142 (20%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L A+ ++ +A++ ++ + + K L L AG++ +V
Sbjct: 1 MQISSRFTIATHMLTVIALECQEHKVTSDFLADSVGVNPVIIRKTLSQLKSAGLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG + + IT+LDV +A E +S + CP+ + L L +
Sbjct: 60 GTGGAVIMKDLKDITLLDVYQAVECLGKSGQLFSFHEHPNPSCPIGRNIHLVLDDKLAEI 119
Query: 115 LNAFFDVLTQYSIECLVRNRSS 136
A L++ S+ +V +
Sbjct: 120 QAAMEKELSKTSLADVVASAQE 141
>gi|20140436|sp|O66625|Y268_AQUAE RecName: Full=Putative HTH-type transcriptional regulator aq_268
Length = 144
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ D ++ +IA+ I FL K++ L K G+V +V+G RGG L + D+ITI D++
Sbjct: 20 NRDRLVKVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDII 79
Query: 80 KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ +++ C + C + + + D +I+ L+
Sbjct: 80 ELFGDAYKYEMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLIN 133
>gi|94985327|ref|YP_604691.1| BadM/Rrf2 family transcriptional regulator [Deinococcus
geothermalis DSM 11300]
gi|94555608|gb|ABF45522.1| transcriptional regulator, BadM/Rrf2 family [Deinococcus
geothermalis DSM 11300]
Length = 148
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 3/134 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ RT + +L + D + +A + + + + ++ L AG+VET RG+
Sbjct: 10 KLSTRTAMAVHILTLVGANPDVAHSSEWLAGSLGVHPVMVRQVTSRLRAAGLVETRRGK- 68
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
G+RL RPA +T+LDV +A E+ + A CP+ L V +A AF
Sbjct: 69 AGLRLTRPASAMTLLDVYRAVEDGDALLALHARPNPSCPVGSGIQAVLEDVFEEARTAFE 128
Query: 120 DVLTQYSIECLVRN 133
L ++ ++
Sbjct: 129 RSLAARTVADVMAR 142
>gi|196047005|ref|ZP_03114224.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|225863879|ref|YP_002749257.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|196022109|gb|EDX60797.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|225789070|gb|ACO29287.1| rrf2 family protein [Bacillus cereus 03BB102]
Length = 143
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSSLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHDITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGQL 133
>gi|81230337|ref|YP_398716.1| BadM/Rrf2 family transcriptional regulator [Synechococcus elongatus
PCC 7942]
gi|215481753|ref|NP_665782.3| ANL44 [Synechococcus elongatus PCC 7942]
gi|157400503|gb|AAM81169.3|AF441790_40 ANL44 [Synechococcus elongatus PCC 7942]
gi|81170309|gb|ABB58647.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 144
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 6/139 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ Y + L+ A +I +IA + +L +IL L K G + + R
Sbjct: 1 MAVSSTFRYALIALIEVAKIRETGGVLQIEEIASQQHLPTKYLGQILTLLRKQGFLISQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG RL R QI ++D+ + EE+ SH + + +L + A+
Sbjct: 61 GRHGGYRLAREPWQIRLIDIYYSLEEAQQAGASLPSHATS----SAMVVDQLLHQIEAAW 116
Query: 119 FDVLTQYSIECLVRNRSSI 137
+ L Y+++ L +
Sbjct: 117 REPLEHYTLQDLRDQAEGL 135
>gi|254471392|ref|ZP_05084794.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
JE062]
gi|211959538|gb|EEA94736.1| transcriptional regulator, BadM/Rrf2 family [Pseudovibrio sp.
JE062]
Length = 131
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+ D RI Q+ + S + K++ L +AGI+ET+RGR GG +L R A I++ DV
Sbjct: 1 MQPDVIQRIDQVVQQQGFSRGHVMKLVNQLSRAGILETMRGRGGGFKLGRLAKHISVGDV 60
Query: 79 VKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
V+A E F V EC + C + SC L ++++A +AF DVL + +IE
Sbjct: 61 VRAVENDFAVVECLRQSECGEIHCCFLPSCRLKPLMQRASSAFLDVLDEMTIE 113
>gi|296535176|ref|ZP_06897398.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas
cervicalis ATCC 49957]
gi|296264504|gb|EFH10907.1| iron-sulfur cluster assembly transcription factor IscR [Roseomonas
cervicalis ATCC 49957]
Length = 154
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 27/126 (21%), Positives = 51/126 (40%), Gaps = 2/126 (1%)
Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ +++ A H IA+ + + +LQ L +AGI+ + RG +GG RL
Sbjct: 11 AVAIVLDVAFHAGRGSTVPAGDIADRLGEARRGIEPVLQALSRAGILGSTRGPKGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
R A IT+ ++ A + + + L + ++ A L + +I
Sbjct: 71 RAARDITLAELAAAITGPDAPRDGDEADPAAPSPLQEKVLRPLWQELEAALLAQLGELTI 130
Query: 128 ECLVRN 133
L+R
Sbjct: 131 AELLRR 136
>gi|170760233|ref|YP_001786721.1| putative transcriptional regulator [Clostridium botulinum A3 str.
Loch Maree]
gi|169407222|gb|ACA55633.1| putative transcriptional regulator [Clostridium botulinum A3 str.
Loch Maree]
Length = 137
Score = 81.1 bits (199), Expect = 5e-14, Method: Composition-based stats.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG
Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K
Sbjct: 61 VKGGYALNKQPKDINLRDVIEAIDGPICINRCTYDPRYCNAGKNGNCEIHRSLCKIQRKL 120
Query: 119 FDVLTQYSIECLVRNRS 135
L + E ++
Sbjct: 121 VSELEAVNFEEILDKDR 137
>gi|312868528|ref|ZP_07728728.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis
F0405]
gi|311096273|gb|EFQ54517.1| transcriptional regulator, Rrf2 family [Streptococcus parasanguinis
F0405]
Length = 147
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 34/143 (23%), Positives = 64/143 (44%), Gaps = 11/143 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R G VL+ A+ + +A + ++ + + K L L KAG++ RG
Sbjct: 1 MQISSRFTIGTHVLIMIALQGEKTKVTSDFLAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG L + AD+I++LD+ +A E + + + CP+ + + +VL
Sbjct: 61 -TGGAELAKAADEISLLDIYQAVECLGSTGQLFGFHDNPNPACPIGHN--IHNVLDGKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRS 135
A + Q S+E +V+
Sbjct: 118 DIQTAMEKEMAQISLEQVVKEAK 140
>gi|268317560|ref|YP_003291279.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
DSM 4252]
gi|262335094|gb|ACY48891.1| transcriptional regulator, BadM/Rrf2 family [Rhodothermus marinus
DSM 4252]
Length = 144
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + + A N + +++ S L +I+ L AG+ + +RG
Sbjct: 2 ISLSGRQALAAMQVLAQQNHGRFVPVRRLSRMIGASPHTLARIMLRLTAAGLTDALRGPG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GGVRL RPA +IT+ ++++ + + C + C C L ++ +
Sbjct: 62 GGVRLARPAHEITLFEILQEIDGPEVLNRCILGLGV-CNEARPCPLHAIWFPCRQQLRQM 120
Query: 122 LTQYSIECLVRNRSS 136
L + ++ L+ ++
Sbjct: 121 LAETTLADLIHPSNN 135
>gi|34581609|ref|ZP_00143089.1| hypothetical protein [Rickettsia sibirica 246]
gi|28262994|gb|EAA26498.1| unknown [Rickettsia sibirica 246]
Length = 128
Score = 80.7 bits (198), Expect = 5e-14, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 56/128 (43%), Gaps = 2/128 (1%)
Query: 12 RVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ A + P +++++ IS +L +I L KA +V+ +RG +GG L
Sbjct: 1 MAILEMASKSSAEPVTLNEMSVKQNISLNYLEQIFSKLKKADLVKAIRGSKGGYILIGNL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
++I I D++ A E+F + C+ C P C + + D SI+
Sbjct: 61 EEIKISDIMDAVNENFIMTTCYKKSVKTCVPDTIKCNSHKLWQGLGKHIRDYFENISIKD 120
Query: 130 LVRNRSSI 137
+ + +I
Sbjct: 121 ALNSNLNI 128
>gi|332878892|ref|ZP_08446607.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral
taxon 329 str. F0087]
gi|332683243|gb|EGJ56125.1| transcriptional regulator, Rrf2 family [Capnocytophaga sp. oral
taxon 329 str. F0087]
Length = 148
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + Y I ++Y A ++ + ++A+A I FL KILQ LV+ ++ + +G
Sbjct: 2 LSNSSKYAINAVIYLAANSSESKRIGVKEVADALHIPLPFLAKILQALVRKKVISSNKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + ++ VV+ E+ +C S + C C L + ++ + F
Sbjct: 62 GGGFWLTDDEKEQPLMRVVEQIGEADKFIKCAMSLRP-CSDEKPCPLHTSVQPFRDNFRK 120
Query: 121 VLTQYSIECLVRN 133
LT+ SI
Sbjct: 121 ELTENSIADFAEK 133
>gi|210617663|ref|ZP_03291694.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787]
gi|210149210|gb|EEA80219.1| hypothetical protein CLONEX_03918 [Clostridium nexile DSM 1787]
Length = 147
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + + +A + ++ + + KIL L AG+V+ RG
Sbjct: 1 MQISSRFTIAVHIFACIDTFKEEFKLTSEFLAASINVNPVIIRKILSQLKAAGLVKVQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
GG + +P D+IT D+ +A E E + + CP+ + + +VL +
Sbjct: 61 -SGGASIAKPLDEITFFDIYQAVECVEHGELFHFHENPNQKCPVGRN--IHNVLDGKLIQ 117
Query: 114 ALNAFFDVLTQYSIECLVRN 133
+A + L + ++E ++++
Sbjct: 118 IQDALENELGKITLEDVMKD 137
>gi|186685046|ref|YP_001868242.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186467498|gb|ACC83299.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
73102]
Length = 145
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
+I +IA I +L ++L L + G+++++RG +GG L R +IT+LD
Sbjct: 23 KGEALQIREIAVLQDIPNRYLEQLLATLRRGGLIKSIRGAKGGYVLARDPGKITVLDAFS 82
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
E S V + V ++A A VL +Y+++ L RS K+
Sbjct: 83 CMEGSDIVVSDSEPTPNTVEGE---LIQEVWQEARQAANSVLEKYTLQDLCERRSLRKQ 138
>gi|325003478|ref|ZP_08124590.1| rrf2 family protein, putative transcriptional regulator
[Pseudonocardia sp. P1]
Length = 156
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + ++ + + A P S++A + +L K +Q LV+AG+ E+V G
Sbjct: 1 MRMGQGVEWALHCCLNLAW-TGEPVPGSRLAAFYDLPPAYLTKQMQALVRAGVCESVPGP 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC------FASHKIDCPLVGSCGLTSVLRKA 114
RGG RL R +++++LDVV A E C GSC + +R+A
Sbjct: 60 RGGFRLVRAPEEVSLLDVVVALEGPEDAFRCTSILGAAPGGDPAADYSGSCAFSLSMRRA 119
Query: 115 LNAFFDVLTQYSIECL 130
A+ L S+ +
Sbjct: 120 ELAWRRELAARSLADV 135
>gi|312194978|ref|YP_004015039.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c]
gi|311226314|gb|ADP79169.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c]
Length = 151
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R L+ A + + +A A + FL IL L ++G+V + RG
Sbjct: 1 MQISARADYALRALLTLAASDGGLVKGETLASAQDLPLRFLENILTDLRRSGLVASRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L RPA +I + V++AT+ ++ + L V +
Sbjct: 61 EGGYQLARPAAEIDVATVIRATDGPLAGVRGRRPEEVTYE-GAAKNLQDVWIAVRVSLRQ 119
Query: 121 VLTQYSIECLV 131
VL ++ +
Sbjct: 120 VLESVTLADIA 130
>gi|320531098|ref|ZP_08032127.1| Rrf2 family protein [Selenomonas artemidis F0399]
gi|320136680|gb|EFW28633.1| Rrf2 family protein [Selenomonas artemidis F0399]
Length = 160
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 60/147 (40%), Gaps = 10/147 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L+ + D ++ + + + +IL L +AG++ +RG
Sbjct: 12 MQISSRFTIAVHILICIDVFGDTETETSESLSGSIGAHPVVIRRILGQLRRAGLIRIMRG 71
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
R GG L RP +IT+ DV A E + + CP+ S + VL
Sbjct: 72 REGGAYLMRPLSEITLADVFHAVESLGGDTLFSFHENPNPACPVGRS--IHDVLDNRLAD 129
Query: 114 ALNAFFDVLTQYSIECLVRN-RSSIKK 139
A + ++ + + R IK+
Sbjct: 130 IQRAMERAMEGMTLANIAEDARQEIKR 156
>gi|237794684|ref|YP_002862236.1| putative transcriptional regulator [Clostridium botulinum Ba4 str.
657]
gi|229261414|gb|ACQ52447.1| putative transcriptional regulator [Clostridium botulinum Ba4 str.
657]
Length = 137
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG
Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEGLPLRFLLKLLRKLTKSGIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K
Sbjct: 61 VKGGYALNKQPKDINLRDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHMTLCKIQRKL 120
Query: 119 FDVLTQYSIECLVRNRS 135
L + + ++
Sbjct: 121 VSELEAVNFQEILDEDR 137
>gi|304407788|ref|ZP_07389439.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304343271|gb|EFM09114.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 142
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L+Y A + +A+ + K++ L K+G V T G G
Sbjct: 1 MNSEFTIAVHSLVYLAYVPERMASSEALADNVGTHPARIRKVMSVLRKSGYVATREGAGG 60
Query: 63 GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G RL +++++ D+ + + S + C ++DC + + + + A
Sbjct: 61 GYRLTAEPNEVSLGDIYRVMAQGSLMPSWCSGDPEMDCVVGSNMKQVMFGIFCTAEKRLE 120
Query: 120 DVLTQYSIECLV 131
+I ++
Sbjct: 121 THFNAITIRDVL 132
>gi|229069492|ref|ZP_04202781.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
gi|228713631|gb|EEL65517.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
Length = 147
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 5 MKISSRFSIAVHILSILKNNPSSHCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 65 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 124 AMEEVLRNITMGQL 137
>gi|268609517|ref|ZP_06143244.1| hypothetical protein RflaF_08475 [Ruminococcus flavefaciens FD-1]
Length = 145
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 10/144 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + + +L I ++ + ++ + + +L L GIVET +G
Sbjct: 1 MQITSKFTVAVHILTCIDIFGSQMRVTSDFLSGSTGVNAVIVRNVLGQLRNTGIVETRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
GG L + D+IT+ D+ KA + + + + +CP+ + + +
Sbjct: 61 -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNAECPVGRN--IHKAMDDRLEA 117
Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
A A + L ++ +V + I
Sbjct: 118 AQAALENELKSTTLAQVVADTRKI 141
>gi|240139920|ref|YP_002964397.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
extorquens AM1]
gi|240009894|gb|ACS41120.1| putative transcriptional regulator, Rrf2 family [Methylobacterium
extorquens AM1]
Length = 150
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 44/135 (32%), Positives = 59/135 (43%), Gaps = 16/135 (11%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHLT A +A+ IS L KI Q LV+AG+VE +GR
Sbjct: 1 MHLT------------LAER-GVWVATPAVAQRFDISVHHLQKIAQTLVRAGVVEARQGR 47
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GGVRL R A +I + +V E V +C CPL+G C L A AFF
Sbjct: 48 SGGVRLARDAREIRLGRLVADLEGVGTVVDCRRD---PCPLLGRCRLKWAFDAAEQAFFL 104
Query: 121 VLTQYSIECLVRNRS 135
L + ++ +V +
Sbjct: 105 ELDRLTLADVVAGPT 119
>gi|229079125|ref|ZP_04211674.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
gi|228704142|gb|EEL56579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock4-2]
Length = 146
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSHCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEIILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|110679145|ref|YP_682152.1| rrf2 family transcriptional regulator [Roseobacter denitrificans
OCh 114]
gi|109455261|gb|ABG31466.1| transcriptional regulator, rrf2 family, putative [Roseobacter
denitrificans OCh 114]
Length = 177
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A + + IAE + + + ++L L KAG++ + +G
Sbjct: 38 MKRNSRLSLALHTLGHMAGDPERVQTSADIAEHAGTNPVVVRRVLGKLRKAGLLTSEKGH 97
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG RL R QIT+ DV A +ES VA A C + + SVL+ +
Sbjct: 98 AGGWRLARAPGQITLADVYLALDESL-VATGEAEAIPACSVEHILQRKVASVLKDVEQSL 156
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNAG 144
+ L+ +I + + NAG
Sbjct: 157 VERLSATTIAEVRESND-----MNAG 177
>gi|324325977|gb|ADY21237.1| RRF2 family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 143
Score = 80.7 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLYEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGHL 133
>gi|262196227|ref|YP_003267436.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Haliangium ochraceum DSM 14365]
gi|262079574|gb|ACY15543.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
DSM 14365]
Length = 140
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 2/133 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R + +L P IA + + + ++L L KAG+ + RG G
Sbjct: 1 MNTRFAVAVHILTLLQAQAGEPASSEWIAGSVNTNPALIRRLLSQLAKAGLTRSQRGAGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
G L R AD IT+ DV +A + V A+ CP+ L L+ A A
Sbjct: 61 GALLARSADSITLADVYQAVSDDADVIPIHAAPNPKCPVGRHIESALAVHLQAAEQALQV 120
Query: 121 VLTQYSIECLVRN 133
L + +I L ++
Sbjct: 121 ELARTTIASLTQD 133
>gi|163939768|ref|YP_001644652.1| BadM/Rrf2 family transcriptional regulator [Bacillus
weihenstephanensis KBAB4]
gi|229132791|ref|ZP_04261636.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
gi|229166820|ref|ZP_04294568.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
gi|163861965|gb|ABY43024.1| transcriptional regulator, BadM/Rrf2 family [Bacillus
weihenstephanensis KBAB4]
gi|228616623|gb|EEK73700.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH621]
gi|228650618|gb|EEL06608.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BDRD-ST196]
Length = 143
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI L +A V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSVCTSDYMAESVNTNPVVIRKITSYLKQAEFVYVKRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEKPNPDCPIGANIQAVLEVILVQAQS 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++ L S+++ NA
Sbjct: 120 AMEEVLRNITMGQLFE---SLQQKMNA 143
>gi|146320050|ref|YP_001199761.1| transcriptional regulator [Streptococcus suis 98HAH33]
gi|253751100|ref|YP_003024241.1| transcriptional regulator [Streptococcus suis SC84]
gi|253753001|ref|YP_003026141.1| transcriptional regulator [Streptococcus suis P1/7]
gi|145690856|gb|ABP91361.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
gi|251815389|emb|CAZ50962.1| putative transcriptional regulator protein [Streptococcus suis
SC84]
gi|251819246|emb|CAR44507.1| putative transcriptional regulator protein [Streptococcus suis
P1/7]
gi|292557653|gb|ADE30654.1| Transcriptional regulator, Rrf2 [Streptococcus suis GZ1]
gi|319757362|gb|ADV69304.1| transcriptional regulator [Streptococcus suis JS14]
Length = 139
Score = 80.7 bits (198), Expect = 7e-14, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG
Sbjct: 1 MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG RL + DQIT+L V +A E E + C + + L S L A
Sbjct: 61 -IGGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLLDSRLENA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
+A + L + + L+
Sbjct: 120 QSALENELAKTRLADLLAE 138
>gi|254423512|ref|ZP_05037230.1| rrf2 family protein (putative transcriptional regulator)
[Synechococcus sp. PCC 7335]
gi|196191001|gb|EDX85965.1| rrf2 family protein (putative transcriptional regulator)
[Synechococcus sp. PCC 7335]
Length = 140
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 14 LMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ ++ + + QIAE + +L K+L L ++ ++ +VRG +GG +L +P+ Q
Sbjct: 1 MLDLSLQPAGSLSSVRQIAERQQLPAPYLEKLLIELRRSRLINSVRGAQGGYQLAKPSSQ 60
Query: 73 ITILDVVKATEE---SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
I++ +++A E S + + + + + ++E
Sbjct: 61 ISLGQILEAVGESASSMTAMAVSSPDNSTQVQAEDWVTSMLWNRLNQKIQEAFHSITLED 120
Query: 130 LVRNRSSIKKIFNAG 144
L + S + G
Sbjct: 121 LYYDARSWQAAQGEG 135
>gi|331004367|ref|ZP_08327840.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411097|gb|EGG90516.1| hypothetical protein HMPREF0491_02702 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 130
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DY +R++ A+ +++A+ + + +K+L L+K+ ++ ++RG
Sbjct: 1 MLITREMDYAVRIIR--ALKEGTKVSATEVAKKEHLPQAITYKVLNSLLKSKLIGSMRGV 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAF 118
GG L T+ D+ A E + EC DC G C L + ++
Sbjct: 59 NGGYYLKCDLSNTTLYDICTALGEDMSITECIRDG-YDCINNRCGECILNKEFGRIQSSL 117
Query: 119 FDVLTQYSIECLV 131
L + +++ L+
Sbjct: 118 NIELQKTTLDKLL 130
>gi|313895665|ref|ZP_07829221.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320528904|ref|ZP_08029996.1| Rrf2 family protein [Selenomonas artemidis F0399]
gi|312975791|gb|EFR41250.1| putative HTH-type transcriptional regulator CymR [Selenomonas sp.
oral taxon 137 str. F0430]
gi|320138534|gb|EFW30424.1| Rrf2 family protein [Selenomonas artemidis F0399]
Length = 147
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 60/133 (45%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YGI +++ A + D P I I+E IS+++L ++ L ++ +V +++
Sbjct: 1 MKISAKGRYGIAAMVFLARNYDASSPITIISISEHLGISKIYLEQVFSLLKRSRLVNSIK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG +L R +I DV+ + + E + V + +
Sbjct: 61 GSQGGYQLSRHPREINAYDVLSSI--EISLIEKAGPATDKMDALNRMLSRCVFDELDRSI 118
Query: 119 FDVLTQYSIECLV 131
+ L S+E L+
Sbjct: 119 LETLRGISLEDLL 131
>gi|229155529|ref|ZP_04283637.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
gi|228627847|gb|EEK84566.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
Length = 146
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKLMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|330684769|gb|EGG96463.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis
VCU121]
Length = 142
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L I ++ IA + + + + +I+ L +A +V+ RG
Sbjct: 1 MKISSRFTVAVHILSLIQIESNQELSSKYIAGSVNTNPVVIRRIIGYLKRAQLVDMYRG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG+ L +P IT+LDV A + E + + ++C + + L +L +A +
Sbjct: 60 NGGLYLLKPLSDITLLDVYHAVDVVEEGQLFQIHEDTNVNCVVGANIQGVLEIILMQAQD 119
Query: 117 AFFDVLTQYSIECLVRN 133
A VL + ++ +V
Sbjct: 120 AMEGVLAKVTMNDIVNQ 136
>gi|319938822|ref|ZP_08013186.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV]
gi|319811872|gb|EFW08138.1| RRF2 family protein [Streptococcus anginosus 1_2_62CV]
Length = 145
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L A+ + +A++ ++ + + KIL L A ++ +V
Sbjct: 1 MQISSRFTIATHMLTVIALECQKHKVTSDFLADSVGVNPVIIRKILSQLKSADLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
RGG + + IT+LDV +A E +S + CP+ + L L +
Sbjct: 60 GRGGAIIRKDLKDITLLDVYQAVESLGKSGQLFSFHEHPNPSCPIGRNIHFVLDDKLAEI 119
Query: 115 LNAFFDVLTQYSIECLVRN-RSSIKK 139
A L++ S+ +V + + IKK
Sbjct: 120 QAAMEKELSKTSLADVVASAQEKIKK 145
>gi|294499841|ref|YP_003563541.1| transcriptional regulator [Bacillus megaterium QM B1551]
gi|294349778|gb|ADE70107.1| Transcriptional regulator, probably rrf2 family [Bacillus
megaterium QM B1551]
Length = 139
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/134 (17%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L++ A D+ IA C + + KI+ L K +V T G G
Sbjct: 1 MNSEFTIAVHSLVFLANLPDHRASSESIAYNICTNPARVRKIMSTLRKNNLVRTKEGLGG 60
Query: 63 GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFF 119
G L +I++ + + + C DC + + + ++ +
Sbjct: 61 GYTLGCSPAEISLGLIYRVISTGTLKPHWCSGDPDADCIVKSNIQTVMDDIFTESEQSVI 120
Query: 120 DVLTQYSIECLVRN 133
L Q +IE +++
Sbjct: 121 RHLDQITIEDVLKK 134
>gi|220925187|ref|YP_002500489.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
nodulans ORS 2060]
gi|219949794|gb|ACL60186.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
nodulans ORS 2060]
Length = 167
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 8/130 (6%)
Query: 10 GIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
+ ++ A+H P +A + L +LQ LV+ G+++ +RG GG L R
Sbjct: 32 AVAAVIDIALHARPQPVSAKALAARHGLPPRHLETVLQALVRHGLLKGLRGPHGGYELAR 91
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+I+ DV +A + D P V + + +L A AF L ++E
Sbjct: 92 ERRRISAGDVARAVLS-------LEGPEPDKPAVAAALVDPLLAAAGQAFLATLDAVTVE 144
Query: 129 CLVRNRSSIK 138
L R + +
Sbjct: 145 DLCRQAEAAR 154
>gi|159898645|ref|YP_001544892.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
aurantiacus ATCC 23779]
gi|159891684|gb|ABX04764.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
aurantiacus ATCC 23779]
Length = 148
Score = 80.3 bits (197), Expect = 7e-14, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 60/135 (44%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L + + S IA + + + + +IL L +AG+V T G
Sbjct: 1 MSASSRFAVAVHILALLETNPNQALSSSCIAASVNTNPVVIRRILGMLNRAGLVYTEYGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG RL R AD+IT+ D+ ATE + +S DC + L+++ A A
Sbjct: 61 DGGTRLARSADEITLNDIYHATENCRILPLHASSPNQDCRCGRTIQPVLSTIFSHAEAAM 120
Query: 119 FDVLTQYSIECLVRN 133
VL S+ +V
Sbjct: 121 QQVLANKSLAEVVNE 135
>gi|15605808|ref|NP_213185.1| hypothetical protein aq_268 [Aquifex aeolicus VF5]
gi|2982976|gb|AAC06590.1| hypothetical protein aq_268 [Aquifex aeolicus VF5]
Length = 156
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ D ++ +IA+ I FL K++ L K G+V +V+G RGG L + D+ITI D++
Sbjct: 32 NRDRLVKVEEIAKVHKIPRPFLAKVMHELSKRGVVYSVKGPRGGFSLAKEPDKITIWDII 91
Query: 80 KATEESFFVAECFASHKIDCPLVGS-CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ +++ C + C + + + D +I+ L+
Sbjct: 92 ELFGDAYKYEMCLLMPHKCSEFADNPCIVHHKWEELKSQIQDFFKGTTIKDLIN 145
>gi|28210311|ref|NP_781255.1| hypothetical protein CTC00575 [Clostridium tetani E88]
gi|28202747|gb|AAO35192.1| conserved protein (RRF2 family protein) [Clostridium tetani E88]
Length = 138
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M++T+ DYGIR ++ A + IAE I FL K+L+ L++AGIV + RG
Sbjct: 4 MNITQEADYGIRAVLILAKEGEGEKLDAKTIAERGNIPLRFLLKLLRKLIQAGIVRSYRG 63
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAF 118
GG L + ++ I + +V+++ + V C + C + LRK N F
Sbjct: 64 VNGGYALNKHSEDINLKEVIESIDGPIAVNRCITDKDFCNAKKTEICVVHKELRKVQNIF 123
Query: 119 FDVLTQYSIECL 130
L + + L
Sbjct: 124 VKELEKITFSKL 135
>gi|322387140|ref|ZP_08060750.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
700779]
gi|321141669|gb|EFX37164.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
700779]
Length = 143
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 64/144 (44%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQISSRFTIATHMLVIIALKGKESKVTSDFLASSVGVNPVIIRKTLSQLKKADLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + + I++LD+ +A E ++ + + DCP+ + + VL +
Sbjct: 60 GTGGAEIIKELEDISLLDIYQAVECLGKTGQLFSFHDNPNPDCPVGAN--IHGVLDEKLD 117
Query: 114 -ALNAFFDVLTQYSIECLVRNRSS 136
A + L+Q S+ +V + +
Sbjct: 118 KIQEAMEEELSQTSLARVVADAEA 141
>gi|291300389|ref|YP_003511667.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
nassauensis DSM 44728]
gi|290569609|gb|ADD42574.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
nassauensis DSM 44728]
Length = 162
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +++ ++ I + A N S++A + +L K LQ L +AGI+ + G
Sbjct: 5 MKMSEGVEWAIHSCLNLAWANRDAIPASRLAAYHELPPAYLNKQLQALCRAGILTSTTGP 64
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114
RGG RL RP D I+ +DVV A E C + +C ++ +R A
Sbjct: 65 RGGFRLARPLDDISFMDVVTAIEGGDDAFACTEIRQRGPNGGPAENFPHTCAVSRTMRAA 124
Query: 115 LNAFFDVLTQYSIEC 129
+ L Q+++
Sbjct: 125 ELTWRRELAQHTLAD 139
>gi|312112835|ref|YP_004010431.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Rhodomicrobium vannielii ATCC 17100]
gi|311217964|gb|ADP69332.1| transcriptional regulator, BadM/Rrf2 family [Rhodomicrobium
vannielii ATCC 17100]
Length = 149
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L T + I ++ A IAE IS L K+L+ L + GIV+ RG
Sbjct: 1 MRLQVATRHAIFSVLELAAQPHRQMSAVDIAEKYAISPNHLAKVLRTLGREGIVDASRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++T+ D++ A E D + L V+ + +
Sbjct: 61 GGGYRFVGNPKRLTLFDII-AIFEPIGPTTGGFEAGDDTSEGQA--LRLVMNEIEDTARA 117
Query: 121 VLTQYSIECLVR 132
L+ +I+ +++
Sbjct: 118 TLSSITIDTMLK 129
>gi|307151464|ref|YP_003886848.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
7822]
gi|306981692|gb|ADN13573.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7822]
Length = 146
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 7/130 (5%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
Y + VL+ H I ++A IS+ +L I L + G+++ + L
Sbjct: 20 VKYALLVLLELVTHPS--ASIDEMATKYLISKPYLEWICANLQRGGLIDKPKEAEEIYAL 77
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
QIT+LDVV+A E F ++ D + + + A + L QY+
Sbjct: 78 NFQPKQITLLDVVRAIETQANPVMGFETYSPD-----RRLIHQIWHEVRTAAQNTLQQYT 132
Query: 127 IECLVRNRSS 136
+E L + ++
Sbjct: 133 LEDLCQKPNA 142
>gi|168185784|ref|ZP_02620419.1| Rrf2 family protein [Clostridium botulinum C str. Eklund]
gi|169296028|gb|EDS78161.1| Rrf2 family protein [Clostridium botulinum C str. Eklund]
Length = 139
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +R ++Y I+E+ I FL KIL+ L AGIVE+ RG
Sbjct: 1 MKITQEVDYALRTVLYLCKLGYGEKIEAKNISESENIPIRFLLKILRKLKHAGIVESYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + I+I D+++ + ++ C + C + + L N
Sbjct: 61 VNGGYALNKYPKDISIEDIIRIIDGPIYMNRCIYDPKYCNLNRSSKCVIHNALESVQNTL 120
Query: 119 FDVLTQYSIECLVR 132
L + E L+
Sbjct: 121 VSNLKAINFENLLN 134
>gi|163857206|ref|YP_001631504.1| putative transcriptional regulator [Bordetella petrii DSM 12804]
gi|163260934|emb|CAP43236.1| putative transcriptional regulator [Bordetella petrii]
Length = 160
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +++ ++ + + A ++ +++A A + +L K LQ LVKAGI+ +
Sbjct: 1 MKMSEGVEWALHCCLTLAWLDNDGASVPTARLAAAFELPPAYLNKCLQLLVKAGILVSTA 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFA-------SHKIDCPLVGSCGLTSVL 111
G +GG RL R +IT+LDVV A E C + V CG+ +
Sbjct: 61 GVKGGFRLARAPARITLLDVVTAIEGPEGAFRCAEIRQRGAGASASPREFVRPCGIAVAM 120
Query: 112 RKALNAFFDVLTQYSIECLVR 132
R+A A+ L ++ L+
Sbjct: 121 RRAETAWRRELAAQTVADLLD 141
>gi|194467571|ref|ZP_03073558.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri
100-23]
gi|194454607|gb|EDX43504.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri
100-23]
Length = 151
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 4/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ P + IA + S + + +++ L KAG++ TV G
Sbjct: 1 MKISTRFSDSIHILAFINIYQGTIPLTSNNIASSIETSPVVVRRLMSALNKAGLINTVHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + I++ D+ A E + C + G+ L ++A A
Sbjct: 61 AADPALA-KSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGNIQETLNGFYQQAETA 119
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
L + S++ ++ + I +A
Sbjct: 120 AKAKLARTSLQDVIDTIRVKQAIKDA 145
>gi|229184155|ref|ZP_04311364.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
gi|228599270|gb|EEK56881.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus BGSC 6E1]
Length = 146
Score = 80.3 bits (197), Expect = 8e-14, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSSLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHDITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|225871965|ref|YP_002753419.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
gi|225791981|gb|ACO32071.1| rrf2 family protein [Acidobacterium capsulatum ATCC 51196]
Length = 145
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 56/130 (43%), Gaps = 2/130 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R G+ ++ A D IA + + + ++ L AG+V++ +G
Sbjct: 1 MAVNTRFATGVHAMVLLAAEPDTLQTSETIAGRLETNPVVVRRVFSLLHHAGLVDSHKGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +L RPA QIT+ D+ KA ++ + + S L V + + D
Sbjct: 61 SGGSKLARPAKQITLADIYKAL-DTGDLFHTAEFASEEAAHTAS-ALHQVFKNIERSLRD 118
Query: 121 VLTQYSIECL 130
L++ ++ +
Sbjct: 119 ELSKTTLSQI 128
>gi|90021696|ref|YP_527523.1| BadM/Rrf2 family transcriptional regulator [Saccharophagus
degradans 2-40]
gi|89951296|gb|ABD81311.1| transcriptional regulator, BadM/Rrf2 family [Saccharophagus
degradans 2-40]
Length = 138
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 4/129 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
++ + + +L + A +D P +QIA+ + + + + + L + G VE+ +GR GG
Sbjct: 5 SRLSRV-LHILAHLAT-SDEPVTSTQIAKFQSTNPVVVRRTMGLLREHGYVESTKGRNGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
+ RP IT+LD+ +A ES CP+ S L +V+ +
Sbjct: 63 WAISRPLSDITLLDIHRAFGESSLFTIGLTDEHAHCPIEKSINESLAAVMNETEALLLKR 122
Query: 122 LTQYSIECL 130
+ +++ L
Sbjct: 123 FGEITLDAL 131
>gi|307324656|ref|ZP_07603862.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306889538|gb|EFN20518.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 158
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ ++ + + + P +++AE +S +L K LQ L +AG+V +V+G+ G
Sbjct: 1 MSGGVEWALHCCVVL-TSVEEPVPATKLAEFHDVSASYLAKQLQALSRAGLVRSVQGKAG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLRKA 114
G L R IT+LDVV+A + C A+ C C + + A
Sbjct: 60 GYILTREPASITLLDVVEAVDGPAAAFTCTEIRQRGPLATPAESC--TTPCPIARAMSGA 117
Query: 115 LNAFFDVLTQYSIECLVRN 133
A+ L SI L ++
Sbjct: 118 DAAWRAALRAVSIADLAQD 136
>gi|206977492|ref|ZP_03238387.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|206744342|gb|EDZ55754.1| rrf2 family protein [Bacillus cereus H3081.97]
Length = 143
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGQL 133
>gi|224367513|ref|YP_002601676.1| hypothetical protein HRM2_03930 [Desulfobacterium autotrophicum
HRM2]
gi|223690229|gb|ACN13512.1| conserved hypothetical protein [Desulfobacterium autotrophicum
HRM2]
Length = 162
Score = 80.3 bits (197), Expect = 9e-14, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + L Y ++ I QIAE I +L K+ L KAGIV + G
Sbjct: 1 MQFSIGVENAFHSLFYMVDFPEHKTIGIKQIAELNKIKVTYLSKVFTKLRKAGIVRSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
+GG L + A+ I+ D+++A E + +C C + V+
Sbjct: 61 VKGGYELAKQAENISFWDIIEAIEGPTYFFQCAEIRKKNIFVDDPSVFTAECPCLIKVVI 120
Query: 112 RKALNAFFDVLTQYSI 127
++A F D L S+
Sbjct: 121 QEAEELFRDRLRNRSL 136
>gi|313676812|ref|YP_004054808.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
DSM 4126]
gi|312943510|gb|ADR22700.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
DSM 4126]
Length = 144
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 54/133 (40%), Gaps = 4/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR ++Y A + +I IAE F KIL LVK IV ++ G
Sbjct: 2 FSKSCEYGIRAVIYIATQSKKTDRVKIGDIAEKINSPVAFTAKILGLLVKNKIVSSITGP 61
Query: 61 RGGVRLCRPADQI-TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + + + D+V+ + + C +C C + K
Sbjct: 62 KGGFYIEQNRLDKVFLKDIVEVIDGNKIYKGC-GLGLNECSASQPCPVHHKFAKVRAEID 120
Query: 120 DVLTQYSIECLVR 132
+L+ +++ L
Sbjct: 121 YMLSTTTLKELTE 133
>gi|257054249|ref|YP_003132081.1| rrf2 family protein, putative transcriptional regulator
[Saccharomonospora viridis DSM 43017]
gi|256584121|gb|ACU95254.1| rrf2 family protein, putative transcriptional regulator
[Saccharomonospora viridis DSM 43017]
Length = 156
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + ++ + + + D P +++A+ + +L K LQ L + I+ +V G
Sbjct: 1 MRLGQAVEWMLHTCLNLSW-VDEPVSTARLADIYRLPSAYLNKQLQALAREKILVSVPGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF------ASHKIDCPLVGSCGLTSVLRKA 114
RGG RL R +I++LDVV A E C D C ++ +R+A
Sbjct: 60 RGGFRLARDPAEISLLDVVVAVEGKAEAFRCAQILRNGPGGDPDVDYSSYCVVSQSMRRA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
A+ L +I + +
Sbjct: 120 ELAWRRELAGRTIADIAAD 138
>gi|228907665|ref|ZP_04071522.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
200]
gi|228852157|gb|EEM96954.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis IBL
200]
Length = 146
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGHL 136
>gi|118445083|ref|YP_879134.1| rrf2 family protein ( transcriptional regulator) [Clostridium novyi
NT]
gi|118135539|gb|ABK62583.1| rrf2 family protein (putative transcriptional regulator)
[Clostridium novyi NT]
Length = 139
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +R ++Y I+E I FL KIL+ L AGIVE+ RG
Sbjct: 1 MKITQEVDYALRTVLYLCKLGYGEKIEAKNISETENIPIRFLLKILRKLKHAGIVESYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
GG L + I+I D+++ + ++ C + +C + + L N
Sbjct: 61 VNGGYALNKYPKDISIEDIIRIIDGPIYMNRCIYDPKYCNLNRSSTCVIHNALESVQNTL 120
Query: 119 FDVLTQYSIECLVR 132
L + E L+
Sbjct: 121 VSNLKAINFENLLN 134
>gi|170754322|ref|YP_001780964.1| putative transcriptional regulator [Clostridium botulinum B1 str.
Okra]
gi|169119534|gb|ACA43370.1| putative transcriptional regulator [Clostridium botulinum B1 str.
Okra]
Length = 137
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 2/137 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV+++ + I+E + FL K+L+ L K+GIV + RG
Sbjct: 1 MKITQEADYALRVILHLSKLGYGERVEARIISEQEVLPLRFLLKLLRKLTKSGIVVSFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECF-ASHKIDCPLVGSCGLTSVLRKALNAF 118
+GG L + I + DV++A + + C + G+C + L K
Sbjct: 61 VKGGYALNKQPKDINLKDVIEAIDGPICINRCIYDPRYCNAGKNGNCEIHRALCKIQRKL 120
Query: 119 FDVLTQYSIECLVRNRS 135
L + + ++
Sbjct: 121 VSELEAVNFQEILDKDR 137
>gi|42526191|ref|NP_971289.1| hypothetical protein TDE0676 [Treponema denticola ATCC 35405]
gi|41816303|gb|AAS11170.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
Length = 139
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + L+ D I+ + ++ + + KIL L KAG+VET G
Sbjct: 1 MKISVRFTAAVHTLLCIRYFEKDMRVTSDFISASTGVNAVIIRKILLQLQKAGLVETAAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG L + AD+IT+LDV A E + CP+ L L A
Sbjct: 61 V-GGSHLAQTADKITLLDVYNAINEGDEERDIFNFHPKPNPKCPVGRKIHLVLDDKLDDA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
NA D L++ +I L ++
Sbjct: 120 QNAMKDSLSKTTIADLSKD 138
>gi|312880753|ref|ZP_07740553.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
DSM 12260]
gi|310784044|gb|EFQ24442.1| transcriptional regulator, BadM/Rrf2 family [Aminomonas paucivorans
DSM 12260]
Length = 157
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M+LT+ ++Y A P +I + +E + K LQ L++ G++ + +G
Sbjct: 5 MNLTETLSLAFHSMVYLAERRGPRPCSAREIGDHFGATEPLVTKTLQRLLRTGLIRSCKG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L P +++++L + +A E C C + ++
Sbjct: 65 PGGGYSLVVPPEEVSLLSIAEAVEGPLKSQGCALKGCN----RPPCPVKGLVDAVTERVS 120
Query: 120 DVLTQYSIECLVR 132
L ++ LV
Sbjct: 121 QELASKTLAELVE 133
>gi|256042842|ref|ZP_05445789.1| RfF2 family protein [Brucella melitensis bv. 1 str. Rev.1]
Length = 100
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 2 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI-DC 99
GG L PA +I I ++++A + + C + C
Sbjct: 62 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDYRPC 100
>gi|312131867|ref|YP_003999207.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
byssophila DSM 17132]
gi|311908413|gb|ADQ18854.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
byssophila DSM 17132]
Length = 136
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 2/131 (1%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
R + VL A + + IA + CI+ + + + L L +AG++ + +G+ GG
Sbjct: 3 NTRFSTALHVLTLLAKNQEDWVSSDYIAGSICINPVMVRRELSSLNEAGLIYSRKGKDGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
+L + ++I++ +V A + S + + +CP+ L + +A +
Sbjct: 63 SKLSKKPEEISLGEVYLAVKNSEILGKKNKDTNSNCPVGSRINQKLEELSHEADSLLRQY 122
Query: 122 LTQYSIECLVR 132
L + S+ +
Sbjct: 123 LDKKSLAEFAK 133
>gi|328880478|emb|CCA53717.1| Predicted transcriptional regulator of sulfate adenylyltransferase,
Rrf2 family [Streptomyces venezuelae ATCC 10712]
Length = 151
Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R DY +R + A D P + IAE IS FL IL + K G+V++ RG
Sbjct: 1 MRISARADYAVRAALQLAAAQDAGPLKAEAIAEDQGISHKFLEGILGDMRKGGLVQSQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA+ I++ +V++ + + LT +
Sbjct: 61 GNGGYWLARPAESISVAEVIRCVDGPLVSVRGERPPDLSYTGPAESLLT-LWIALRAGVR 119
Query: 120 DVLTQYSIECLVRNR 134
+VL S+ + R
Sbjct: 120 EVL-GVSLAEVAAAR 133
>gi|150025901|ref|YP_001296727.1| hypothetical protein FP1858 [Flavobacterium psychrophilum JIP02/86]
gi|149772442|emb|CAL43924.1| Protein of unknown function YjeB [Flavobacterium psychrophilum
JIP02/86]
Length = 139
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L TD+ +R+LMY + ++++ IS L K++Q L K + T RG
Sbjct: 1 MKLNHFTDFSMRILMYLNHQKEGKTTSLDELSDQFKISRNHLIKVVQFLSKNQYIHTKRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG+ + I + +++ E+ + C + + P +C L + + +F
Sbjct: 61 KNGGIHISNETKTIPLGNLINILEQDNSPIINCDSKPCVLAPH--NCKLKYIFQLGYQSF 118
Query: 119 FDVLTQYSIECL 130
+ L Q+++ L
Sbjct: 119 INTLNQFTLSDL 130
>gi|317056951|ref|YP_004105418.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
gi|315449220|gb|ADU22784.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
Length = 145
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + + +L + + ++ + ++ + + +L L AGIVET +G
Sbjct: 1 MQITSKFTAAVHILTCIDVFDGQMRVTSDFLSGSTGVNAVIVRNVLGQLRTAGIVETRQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
GG L + D+IT+ D+ KA + + + + DCP+ + + + +
Sbjct: 61 -SGGAHLAKALDEITLYDIYKAVDCVDDEGLFHFHENPNADCPVGRN--IHKAMDERLEA 117
Query: 114 ALNAFFDVLTQYSIECLVRNRSSI 137
A A + L ++ +V + +
Sbjct: 118 AQAALENELKSTTLAQVVSDTRKL 141
>gi|256819570|ref|YP_003140849.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga
ochracea DSM 7271]
gi|256581153|gb|ACU92288.1| transcriptional regulator, BadM/Rrf2 family [Capnocytophaga
ochracea DSM 7271]
Length = 145
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + Y I ++Y AIH+ +RI +AEA I FL KILQ L + ++ + +G
Sbjct: 2 LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L Q ++ VV+ E+ C K +C C L + ++ + F
Sbjct: 62 GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
L++ SI + + +
Sbjct: 121 ELSENSIASFAQKIADKTAFLSP 143
>gi|167569489|ref|ZP_02362363.1| Rrf2 family protein [Burkholderia oklahomensis C6786]
Length = 152
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + L ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHALALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPSSITLLDVYRAVDDAQLFALHRETPNPACLVGRHIQGVLTDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|172057569|ref|YP_001814029.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171990090|gb|ACB61012.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 138
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 51/133 (38%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R + +L A H D IA + + + + +++ L +AG++ TV G+
Sbjct: 2 INSRLAVSVHILALIATHPDQALSSDYIAGSVNTNPVVIRRLIGSLRQAGLLSTVAGK-S 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + IT+L + +A E + CP+ L +A A
Sbjct: 61 GATLTKDPQDITLLMIYRAVEPKETLFSMHEQPNPACPVGRDIQSTLNQSFTRAQQALEA 120
Query: 121 VLTQYSIECLVRN 133
L ++ ++
Sbjct: 121 ELGTETLADILHR 133
>gi|188997194|ref|YP_001931445.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium
sp. YO3AOP1]
gi|188932261|gb|ACD66891.1| transcriptional regulator, BadM/Rrf2 family [Sulfurihydrogenibium
sp. YO3AOP1]
Length = 142
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 3/124 (2%)
Query: 11 IRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
IR L+Y AI+ + + +IAE + +L K +Q LVK+GI+E+ RG +GG+ +P
Sbjct: 10 IRALIYLAINQEKNYVSVKEIAEKLNLPFHYLAKNVQKLVKSGILESYRGPKGGIVFKQP 69
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
+ I I+D++K+ ++ C +C C + + N ++ L S++
Sbjct: 70 IESIKIIDIIKSLDDDRLFKSCILGF-EECSDENPCAIHNRWVVERNHLYN-LFNTSLKD 127
Query: 130 LVRN 133
+V +
Sbjct: 128 IVED 131
>gi|89054747|ref|YP_510198.1| BadM/Rrf2 family transcriptional regulator [Jannaschia sp. CCS1]
gi|88864296|gb|ABD55173.1| transcriptional regulator, BadM/Rrf2 family [Jannaschia sp. CCS1]
Length = 136
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 58/132 (43%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A D + IA+ + + + ++L L +AG++ + +G
Sbjct: 1 MKRNSRLSLALHTLGHMAGAPDKLRTSADIADHAGTNPVVVRRVLGRLREAGLLISEKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG RL R IT+ DV A +ES VA + C + ++SV++ +
Sbjct: 61 AGGWRLARAPQSITLADVYLALDESL-VASVESDDVPSCSVEHALHRRVSSVMKDIEQSL 119
Query: 119 FDVLTQYSIECL 130
+ L + +I +
Sbjct: 120 IERLGETTISEV 131
>gi|305665393|ref|YP_003861680.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170]
gi|88710148|gb|EAR02380.1| hypothetical protein FB2170_03815 [Maribacter sp. HTCC2170]
Length = 143
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 3/131 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ + Y ++ ++Y A+++ N+I I+E + + +L K+LQ L + IV + RG
Sbjct: 2 FSNSSKYALKAVLYLAVNSSESNKILAKNISEPINVPQAYLAKLLQELSRYNIVSSTRGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + T++++V + + C S + +C C L
Sbjct: 62 NGGFYLSGQNKKTTLIEIVNVIDGDNRLNSCLLSLQ-NCDNEKPCPLHEFAAPFRTDLLK 120
Query: 121 VLTQYSIECLV 131
L SIE L
Sbjct: 121 NLENSSIEDLA 131
>gi|257870322|ref|ZP_05649975.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
gi|257804486|gb|EEV33308.1| conserved hypothetical protein [Enterococcus gallinarum EG2]
Length = 141
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y + +IA++ + ++ +I+ L AG++E+ RG+
Sbjct: 1 MKYSTKYSDAIHILAYIEMLKGTDLSSDRIAQSVETNPAYVRRIMSDLRTAGLIESQRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+L + ++IT+LD+ + E+ + +C + GS L +
Sbjct: 61 AEP-KLLKKPEEITLLDIYSSVEKDQRLLHIDKKTNPNCLIGGSIQEVLDETYERLQKKI 119
Query: 119 FDVLTQYSIECLVRN 133
+ Q ++ ++
Sbjct: 120 ELEMQQITLADIIDK 134
>gi|228985043|ref|ZP_04145211.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
gi|228774731|gb|EEM23129.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar tochigiensis BGSC 4Y1]
Length = 147
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 5 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 123
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 124 AMEEVLRNITMGQL 137
>gi|47568316|ref|ZP_00239018.1| rrf2 family protein [Bacillus cereus G9241]
gi|47555009|gb|EAL13358.1| rrf2 family protein [Bacillus cereus G9241]
Length = 143
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L ++ +AE+ + + + K++ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNSSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 120 AMEEVLRNITMGQL 133
>gi|28377198|ref|NP_784090.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|254555410|ref|YP_003061827.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|300766930|ref|ZP_07076843.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308179412|ref|YP_003923540.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28270029|emb|CAD62929.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|254044337|gb|ACT61130.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|300495468|gb|EFK30623.1| transcriptional regulator [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308044903|gb|ADN97446.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 146
Score = 79.6 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R I +L Y I+ D IA + S + + +++ L +AG++ T G
Sbjct: 1 MRVSTRFSDSIHLLAYIKIYADTKLTSDAIARSIETSPVVVRRLMSKLRQAGLITTTPGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +P QI++L V A E + DC + G+ L + A A
Sbjct: 61 AQPA-LAKPLSQISLLSVFYAIEGDKPLLAVDPKTNPDCIVGGNIQTVLKQYYQDAQTAA 119
Query: 119 FDVLTQYSIECLVRN 133
L + S++ +V N
Sbjct: 120 EARLAKTSLQDVVDN 134
>gi|326334008|ref|ZP_08200237.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
gi|325948157|gb|EGD40268.1| Rrf2 family protein [Nocardioidaceae bacterium Broad-1]
Length = 153
Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 49/138 (35%), Gaps = 11/138 (7%)
Query: 4 TKRTDYGIRVLMYCA----IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
R + VL Y A P ++A + ++ + + K+L PL AG+V + G
Sbjct: 6 NTRFAVAVHVLTYLASCAAAGRTTPVSSDELAASTAVNPVHVRKVLGPLRTAGLVRSRPG 65
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL---- 115
GG L + + V + + V CP+ S + VL
Sbjct: 66 AHGGWELAADPGVVNLAQVWQLLQGDDPVLGIHGP-NPACPVGAS--IQGVLTDLDRRVA 122
Query: 116 NAFFDVLTQYSIECLVRN 133
A L ++ ++ +
Sbjct: 123 KAVLAELEGITLNDVLDD 140
>gi|229196161|ref|ZP_04322911.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
gi|228587319|gb|EEK45387.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1293]
Length = 146
Score = 79.6 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + K++ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|254509783|ref|ZP_05121850.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
bacterium KLH11]
gi|221533494|gb|EEE36482.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
bacterium KLH11]
Length = 134
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 57/132 (43%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A D S IA+ + + + ++L L +AG++ + +G
Sbjct: 1 MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGKLREAGLLTSEKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG RL RP I++ DV A +E ++ + C + + ++ VL + +
Sbjct: 61 AGGWRLARPPQNISLADVYLALDERLVASDEISEA-PACSVEHALQKRVSGVLEEIEQSL 119
Query: 119 FDVLTQYSIECL 130
L + SI +
Sbjct: 120 VQKLGETSISEV 131
>gi|167562245|ref|ZP_02355161.1| Rrf2 family protein [Burkholderia oklahomensis EO147]
Length = 152
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + L ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHALALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPSSITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|167745831|ref|ZP_02417958.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662]
gi|317470556|ref|ZP_07929944.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
gi|167654695|gb|EDR98824.1| hypothetical protein ANACAC_00525 [Anaerostipes caccae DSM 14662]
gi|316902071|gb|EFV23997.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
Length = 137
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 7/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +++ TDY +R+L A+ + I +I + F ++I++ L AG + RG
Sbjct: 1 MLISRETDYALRILR--ALSDGKKRSIEEICSLEATPKQFAYRIIKKLETAGWIIITRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG----SCGLTSVLRKALN 116
GG RL I++ +++ F + CF +C C + L +
Sbjct: 59 EGGCRLTADLHDISLFQLMQGLGSGFGINACFEEG-YECTRTPLCDEPCHIKEGLLQLEA 117
Query: 117 AFFDVLTQYSIECLV 131
A L + S+ L+
Sbjct: 118 AIEKELKEASLYSLI 132
>gi|116493495|ref|YP_805230.1| BadM/Rrf2 family transcriptional regulator [Pediococcus pentosaceus
ATCC 25745]
gi|116103645|gb|ABJ68788.1| transcriptional regulator, BadM/Rrf2 family [Pediococcus
pentosaceus ATCC 25745]
Length = 142
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 49/134 (36%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ D IA++ + + ++ L AG++ T G
Sbjct: 1 MKYSYKLSDAIHILTYLIIYKDGDLSSKTIADSIESNASTVRNLMSDLRSAGLITTKVGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
R +I+ILDV KA + C + GS L + +
Sbjct: 61 ASPALNAR-PSEISILDVYKAVNMDHNLLHIDPKTNPQCVVGGSIQDVLDDAYAEIQQSA 119
Query: 119 FDVLTQYSIECLVR 132
F + + +I +
Sbjct: 120 FQKMDEITIADITE 133
>gi|265989282|ref|ZP_06101839.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1
str. Rev.1]
gi|262999902|gb|EEZ12641.1| Rrf2 family transcriptional regulator [Brucella melitensis bv. 1
str. Rev.1]
Length = 123
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ +++ A + + S+IAE I FL I L AG V + +G+
Sbjct: 25 LTKKGKYGLKAMVHLAGVTDGQLVSASEIAEKHHIPRKFLDNIFTELRNAGFVLSRKGKG 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
GG L PA +I I ++++A + + C +
Sbjct: 85 GGFCLAHPASEIAIGNIIRALDGALAPIACASKTDY 120
>gi|260888343|ref|ZP_05899606.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185]
gi|330838337|ref|YP_004412917.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
ATCC 35185]
gi|260861879|gb|EEX76379.1| Rrf2 family protein [Selenomonas sputigena ATCC 35185]
gi|329746101|gb|AEB99457.1| transcriptional regulator, BadM/Rrf2 family [Selenomonas sputigena
ATCC 35185]
Length = 148
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + YG+ + + A + P I I+E IS+++L ++ L A +V + +
Sbjct: 1 MKISAKGRYGLAAMAFLARIGQANSPTTILTISENLGISKIYLEQVFSLLKHARLVTSSK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL-TSVLRKALNA 117
G +GG L R A +IT DV+ A + E D L + V A
Sbjct: 61 GSQGGYHLARAAQEITAWDVLAAI--ELPLTEKAGPATGDAQEDLEQALASCVYDPLDAA 118
Query: 118 FFDVLTQYSIECLVRNRS 135
L ++ ++
Sbjct: 119 IRKSLQGVNLCAILEEAD 136
>gi|260655751|ref|ZP_05861220.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
gi|260629367|gb|EEX47561.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
Length = 152
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 4/123 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
G+ L+ + P ++E+ S+ L K+LQ L AG V +RG GG +L
Sbjct: 4 GLHALVALGREPEQPRTTETLSESIGCSKTHLSKVLQKLCHAGYVTALRGPGGGYQLALR 63
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
++I +L V + F C H + C + +++ + AF D L +
Sbjct: 64 PEKICMLHVFELLGGPFIPTGCTVDHHQN----EPCLIGAMMDELTIAFRDYLATKTFYH 119
Query: 130 LVR 132
L+R
Sbjct: 120 LLR 122
>gi|116328585|ref|YP_798305.1| transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116331314|ref|YP_801032.1| transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
gi|116121329|gb|ABJ79372.1| Transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis L550]
gi|116125003|gb|ABJ76274.1| Transcriptional regulator [Leptospira borgpetersenii serovar
Hardjo-bovis JB197]
Length = 139
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 51/133 (38%), Gaps = 2/133 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T R I +L ++ ++AE+ + + + KIL L GIV G G
Sbjct: 1 MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNRGIVRNQMGPNG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
G L + I + ++ A +E F + +K C L+ V KA D
Sbjct: 61 GYVLAKTPSAINLKEIYVAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEDE 120
Query: 122 LTQYSIECLVRNR 134
L ++ L+
Sbjct: 121 LGSTNL-DLIARE 132
>gi|312960535|ref|ZP_07775041.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
gi|311285061|gb|EFQ63636.1| putative transcriptional regulator [Pseudomonas fluorescens WH6]
Length = 145
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 7/141 (4%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + + L L + G V + +G +
Sbjct: 6 RLSRM----LHVLIHMGRHEER-ATSETIAQMLGTNPVVVRRTLGLLKEKGYVRSEKGHQ 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L +P +IT+LD+ A A ++ C + + LT +A
Sbjct: 61 GGWSLGKPLSEITLLDIHNALGTPSIFAIGLSTDHPQCLVEQAVNAALTDAFEQAQALLL 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L + ++ L N ++
Sbjct: 121 KRLGKVTLAQLAENFDERYRV 141
>gi|116052211|ref|YP_788945.1| hypothetical protein PA14_09960 [Pseudomonas aeruginosa UCBPP-PA14]
gi|296387274|ref|ZP_06876773.1| hypothetical protein PaerPAb_04052 [Pseudomonas aeruginosa PAb1]
gi|115587432|gb|ABJ13447.1| putative transcriptional regulator [Pseudomonas aeruginosa
UCBPP-PA14]
Length = 142
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A H + P IA+ + + + + + L G V + +G R
Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIAQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG RL +P IT+LD+ +A S A ++ +C + + L A
Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
+ L ++E L
Sbjct: 121 ERLGSVTLEQLASE 134
>gi|291562312|emb|CBL41128.1| transcriptional regulator, BadM/Rrf2 family [butyrate-producing
bacterium SS3/4]
Length = 147
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 56/137 (40%), Gaps = 3/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + +L + A++ D +++AE+ + ++ +++ L K G++ +V+G
Sbjct: 1 MKYPTRLSDAVHILAFIALYPDCDLTSNKLAESIQTNPAYVRQLMSALRKGGLLVSVKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L R ++IT+LD +A E + + C + + L
Sbjct: 61 PRPA-LAREPEKITLLDAYRAVEGNKPLLHQDIHTNPACGVGVNIQLVLRDFYLDIQKTA 119
Query: 119 FDVLTQYSIECLVRNRS 135
+ + +++ ++
Sbjct: 120 EQRMQEITLKDVLEQYH 136
>gi|213962009|ref|ZP_03390274.1| Rrf2 family protein [Capnocytophaga sputigena Capno]
gi|213955362|gb|EEB66679.1| Rrf2 family protein [Capnocytophaga sputigena Capno]
Length = 145
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + Y I ++Y A+H IAEA I FL KILQ L + ++ + +G
Sbjct: 2 LSNSSKYAINAVIYLALHASPTKRLAPKDIAEALHIPTSFLAKILQTLARKKVISSNKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L +++VVK E+ C K +C C L + ++ + F
Sbjct: 62 GGGFWLTDEEKAAPLMNVVKQIGEAEKFTSCAMGFK-ECSSEKPCPLHTSVQPFRDNFMR 120
Query: 121 VLTQYSIECLVRN 133
LT SI +
Sbjct: 121 ELTNNSIASFAQK 133
>gi|53718907|ref|YP_107893.1| hypothetical protein BPSL1272 [Burkholderia pseudomallei K96243]
gi|53724208|ref|YP_103396.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
gi|76811767|ref|YP_332909.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
gi|121601481|ref|YP_992509.1| Rrf2 family protein [Burkholderia mallei SAVP1]
gi|126442156|ref|YP_001058415.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
gi|126448208|ref|YP_001080027.1| Rrf2 family protein [Burkholderia mallei NCTC 10247]
gi|126452517|ref|YP_001065649.1| putative transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|134283856|ref|ZP_01770553.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
gi|167003976|ref|ZP_02269754.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
gi|167737931|ref|ZP_02410705.1| putative transcriptional regulator [Burkholderia pseudomallei 14]
gi|167815112|ref|ZP_02446792.1| putative transcriptional regulator [Burkholderia pseudomallei 91]
gi|167823530|ref|ZP_02455001.1| putative transcriptional regulator [Burkholderia pseudomallei 9]
gi|167893621|ref|ZP_02481023.1| putative transcriptional regulator [Burkholderia pseudomallei 7894]
gi|167902069|ref|ZP_02489274.1| putative transcriptional regulator [Burkholderia pseudomallei NCTC
13177]
gi|167910306|ref|ZP_02497397.1| putative transcriptional regulator [Burkholderia pseudomallei 112]
gi|167918337|ref|ZP_02505428.1| putative transcriptional regulator [Burkholderia pseudomallei
BCC215]
gi|217423763|ref|ZP_03455264.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
gi|226198599|ref|ZP_03794165.1| putative transcriptional regulator [Burkholderia pseudomallei
Pakistan 9]
gi|237811658|ref|YP_002896109.1| Rrf2 family protein [Burkholderia pseudomallei MSHR346]
gi|238563952|ref|ZP_00437973.2| Rrf2 family protein [Burkholderia mallei GB8 horse 4]
gi|242316881|ref|ZP_04815897.1| putative transcriptional regulator [Burkholderia pseudomallei
1106b]
gi|254177742|ref|ZP_04884397.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
gi|254180297|ref|ZP_04886896.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
gi|254188276|ref|ZP_04894787.1| putative transcriptional regulator [Burkholderia pseudomallei
Pasteur 52237]
gi|254198415|ref|ZP_04904837.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
gi|254209429|ref|ZP_04915775.1| putative transcriptional regulator [Burkholderia mallei JHU]
gi|254260515|ref|ZP_04951569.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
gi|254358932|ref|ZP_04975205.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
gi|52209321|emb|CAH35266.1| conserved hypothetical protein [Burkholderia pseudomallei K96243]
gi|52427631|gb|AAU48224.1| Rrf2 family protein [Burkholderia mallei ATCC 23344]
gi|76581220|gb|ABA50695.1| Rrf2 family protein [Burkholderia pseudomallei 1710b]
gi|121230291|gb|ABM52809.1| Rrf2 family protein [Burkholderia mallei SAVP1]
gi|126221649|gb|ABN85155.1| putative transcriptional regulator [Burkholderia pseudomallei 668]
gi|126226159|gb|ABN89699.1| putative transcriptional regulator [Burkholderia pseudomallei
1106a]
gi|126241078|gb|ABO04171.1| Rrf2 family protein [Burkholderia mallei NCTC 10247]
gi|134244844|gb|EBA44941.1| putative transcriptional regulator [Burkholderia pseudomallei 305]
gi|147750202|gb|EDK57273.1| putative transcriptional regulator [Burkholderia mallei JHU]
gi|148028059|gb|EDK86080.1| putative transcriptional regulator [Burkholderia mallei 2002721280]
gi|157935955|gb|EDO91625.1| putative transcriptional regulator [Burkholderia pseudomallei
Pasteur 52237]
gi|160698781|gb|EDP88751.1| Rrf2 family protein [Burkholderia mallei ATCC 10399]
gi|169655156|gb|EDS87849.1| putative transcriptional regulator [Burkholderia pseudomallei S13]
gi|184210837|gb|EDU07880.1| putative transcriptional regulator [Burkholderia pseudomallei 1655]
gi|217393621|gb|EEC33642.1| putative transcriptional regulator [Burkholderia pseudomallei 576]
gi|225929342|gb|EEH25363.1| putative transcriptional regulator [Burkholderia pseudomallei
Pakistan 9]
gi|237506811|gb|ACQ99129.1| Rrf2 family protein [Burkholderia pseudomallei MSHR346]
gi|238519606|gb|EEP83077.1| Rrf2 family protein [Burkholderia mallei GB8 horse 4]
gi|242140120|gb|EES26522.1| putative transcriptional regulator [Burkholderia pseudomallei
1106b]
gi|243060594|gb|EES42780.1| putative transcriptional regulator [Burkholderia mallei PRL-20]
gi|254219204|gb|EET08588.1| putative transcriptional regulator [Burkholderia pseudomallei
1710a]
Length = 153
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGVPLSSEVIAGSVNTNPALIRRLLSMLAAAGLTASQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPSRITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|167755523|ref|ZP_02427650.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402]
gi|167704462|gb|EDS19041.1| hypothetical protein CLORAM_01037 [Clostridium ramosum DSM 1402]
Length = 167
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L TDY IR+++Y AI D + +++E I + +FKI + L I+ G +
Sbjct: 38 QLKVSTDYAIRIVLYIAIKKD-IVQSKELSETLGIPQSTVFKIGKKLSDNEIISIATGIQ 96
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL--VGSCGLTSVLRKALNAFF 119
GG +L + I+I ++ E + + C K C +C + V F
Sbjct: 97 GGFKLKKHPKDISIFSIIDIFEPTIRINSCLEEDKY-CSRFATETCPVRKVYCTMQKHFE 155
Query: 120 DVLTQYSIECLV 131
+ L + I L+
Sbjct: 156 EYLKKIKILDLI 167
>gi|223932766|ref|ZP_03624764.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
89/1591]
gi|330832047|ref|YP_004400872.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3]
gi|223898599|gb|EEF64962.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
89/1591]
gi|329306270|gb|AEB80686.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
ST3]
Length = 139
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG
Sbjct: 1 MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG RL + DQIT+L V +A E E + C + + L S L A
Sbjct: 61 V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLLDSRLENA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
+A + L + + L+
Sbjct: 120 QSALENELAKTRLADLLAE 138
>gi|24215428|ref|NP_712909.1| transcriptional regulator [Leptospira interrogans serovar Lai str.
56601]
gi|45657165|ref|YP_001251.1| hypothetical protein LIC11283 [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|24196551|gb|AAN49927.1| transcriptional regulator [Leptospira interrogans serovar Lai str.
56601]
gi|45600403|gb|AAS69888.1| conserved hypothetical protein [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
Length = 139
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 1/132 (0%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T R I +L ++ ++AE+ + + + KIL L GIV G G
Sbjct: 1 MTSRFTVAIHILSLLSLGEGKTKTSEELAESVNTNPVVIRKILSLLKNQGIVRNQMGPNG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKID-CPLVGSCGLTSVLRKALNAFFDV 121
G L + I + ++ +A +E F + +K C L+ V KA +
Sbjct: 61 GYVLAKTPASINLKEIYEAIDEKIFQMHSKSPNKKCICGHAIQPILSKVYEKAQKVLEEE 120
Query: 122 LTQYSIECLVRN 133
L ++ + +
Sbjct: 121 LGSTDLDSITKE 132
>gi|271963708|ref|YP_003337904.1| hypothetical protein Sros_2178 [Streptosporangium roseum DSM 43021]
gi|270506883|gb|ACZ85161.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 149
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ R DY +R A + P + ++A+ + +L IL + +AG+V RG
Sbjct: 1 MRLSARVDYALRAAAELAAAGEGPTTVGELAKEQDMPPKYLENILLQMRRAGLVRGQRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L RPA +IT+ DV++A + +D + L V +
Sbjct: 61 EGGYVLARPAAEITLADVIRAVDGPLANVRGERPEHVDY-RGPAESLQQVWIALRASERA 119
Query: 121 VLTQYSIECLV 131
+L + +++ +
Sbjct: 120 ILEEVTLDSVA 130
>gi|83719348|ref|YP_443374.1| Rrf2 family protein [Burkholderia thailandensis E264]
gi|167582421|ref|ZP_02375295.1| Rrf2 family protein [Burkholderia thailandensis TXDOH]
gi|167620514|ref|ZP_02389145.1| Rrf2 family protein [Burkholderia thailandensis Bt4]
gi|257139623|ref|ZP_05587885.1| Rrf2 family protein [Burkholderia thailandensis E264]
gi|83653173|gb|ABC37236.1| Rrf2 family protein [Burkholderia thailandensis E264]
Length = 154
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPSRITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|255522661|ref|ZP_05389898.1| hypothetical protein LmonocFSL_15876 [Listeria monocytogenes FSL
J1-175]
Length = 114
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
+ IA+ +SE +L +++ PL AGIV+++RG GG L ++IT D+++ E
Sbjct: 1 SLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGP 60
Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ E + + + NA DVL Q ++ L+++
Sbjct: 61 IVLVESMEDEEA--------AQRELWTRMRNAVRDVLDQTTLADLLKH 100
>gi|306829070|ref|ZP_07462260.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC
6249]
gi|322374754|ref|ZP_08049268.1| Rrf2 family protein [Streptococcus sp. C300]
gi|304428156|gb|EFM31246.1| Rrf2 family transcriptional regulator [Streptococcus mitis ATCC
6249]
gi|321280254|gb|EFX57293.1| Rrf2 family protein [Streptococcus sp. C300]
Length = 145
Score = 79.2 bits (194), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +++ A+ + D +A + ++ + + K L L KAG++ +V
Sbjct: 1 MQISSRFTIATHMMISIAMQDTDSKVTSDFLAASVGVNPVIIRKTLSQLKKAGLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E +S + + +CP+ + + +VL
Sbjct: 60 GTGGTEIIKDLQDISLLDVYQAVECLGKSGKLFSFHDNPNPNCPIGAN--IHAVLDQKLF 117
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + L Q S+ +V
Sbjct: 118 DVQAAMENQLRQTSLAQVVAE 138
>gi|146300166|ref|YP_001194757.1| BadM/Rrf2 family transcriptional regulator [Flavobacterium
johnsoniae UW101]
gi|146154584|gb|ABQ05438.1| transcriptional regulator, BadM/Rrf2 family [Flavobacterium
johnsoniae UW101]
Length = 149
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR ++ A + I +A+ E F KI+Q L K GI+ + +G
Sbjct: 2 FSKACEYGIRASIFIATKSSKGIRVGIKDVAKEIDSPEPFTAKIMQILTKNGIIHSAKGV 61
Query: 61 RGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + A I ++ +V A + C K +C C + +K
Sbjct: 62 GGGFEVSKEALKSIKLIQIVDAIDGDKIYRGCGIGLK-ECSEEHPCPVHFEFKKIRGLLL 120
Query: 120 DVLTQYSIECLV 131
+L+ ++E L
Sbjct: 121 QMLSTTTLEQLA 132
>gi|302023274|ref|ZP_07248485.1| transcriptional regulator protein [Streptococcus suis 05HAS68]
Length = 139
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG
Sbjct: 1 MQISSRFTTASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG RL + DQIT+L V +A E E + C + + + S + A
Sbjct: 61 V-GGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNPSCQVGRNIHPLIDSRMEHA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
+A + L + + L+
Sbjct: 120 QSALENELAKTRLADLLAE 138
>gi|322388749|ref|ZP_08062346.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
700779]
gi|321140368|gb|EFX35876.1| Rrf2 family transcriptional regulator [Streptococcus infantis ATCC
700779]
Length = 143
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +AE+ + ++ K++ L AG++ + +G+ G
Sbjct: 3 TKFSVSLHILTMIS-ESKETLSSQALAESVGTNASYIRKVIALLKNAGLITSHQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++T+L++ AT+E + + DCP+ ++ + A
Sbjct: 61 QLSKSPKEVTLLEIYFATQEVSHISLFPVHQNSNPDCPVGKHIQAAVSPLFASAEAQLEK 120
Query: 121 VLTQYSIECLVRN 133
L Q ++E ++ N
Sbjct: 121 ELAQQTLEDVINN 133
>gi|307705360|ref|ZP_07642222.1| transcriptional regulator family protein [Streptococcus mitis
SK597]
gi|307621147|gb|EFO00222.1| transcriptional regulator family protein [Streptococcus mitis
SK597]
Length = 145
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALKGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHEVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ A L Q S+E +V + S
Sbjct: 118 RIQQAMEAELGQTSLEQVVADAES 141
>gi|331082894|ref|ZP_08332015.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330400035|gb|EGG79688.1| hypothetical protein HMPREF0992_00939 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 311
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 2/114 (1%)
Query: 21 NDYPNRISQIAEACCISE--LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+ + + I + + +I+ L K VE V+G+ GG RL + I D+
Sbjct: 189 EEQEIKSNTIRLSIGTENIIDIIERIMPVLSKNHYVEGVQGKGGGYRLTKEPKDYRIGDI 248
Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
++ TE C + C C + ++ + + ++ L++
Sbjct: 249 LRLTEGQLVPVACLECNAETCKRANICKTLPMWKEFHHMVNNYFDNITLSDLMK 302
>gi|89096273|ref|ZP_01169166.1| rrf2 family protein [Bacillus sp. NRRL B-14911]
gi|89089127|gb|EAR68235.1| rrf2 family protein [Bacillus sp. NRRL B-14911]
Length = 138
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I L Y A+ D + I+++ + + + K+L L + G +++ G GG R
Sbjct: 8 AIHSLAYLALQLDRMSTSEAISKSAGVHPVRIRKVLSLLKRNGFIKSKEGTGGGFIFARE 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
D++++ D+ K T E +C C + + L S+ A + L Y+I
Sbjct: 68 LDEVSLWDIYKITSEGALQPKC-PESNEQCIVGANMRNVLFSIFIGAEEHLGEYLKDYTI 126
Query: 128 ECLVR 132
+ +V
Sbjct: 127 KDIVE 131
>gi|288923812|ref|ZP_06417900.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
gi|288344839|gb|EFC79280.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EUN1f]
Length = 151
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 35/134 (26%), Positives = 58/134 (43%), Gaps = 1/134 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R DY +R L+ A + + +A A + FL IL L ++G+V++ RG
Sbjct: 1 MQISARADYALRALLTLAASDGNLVKGETLASAQDLPLRFLENILTDLRRSGLVQSRRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG +LCRPA+ ITI V++AT+ + L V
Sbjct: 61 DGGYQLCRPAEDITIATVIRATDGPLASVRGRPPETAHYE-GAAKHLQDVWIATRVNLRR 119
Query: 121 VLTQYSIECLVRNR 134
VL ++ + +
Sbjct: 120 VLEAVTLADVASGK 133
>gi|254460966|ref|ZP_05074382.1| transcriptional regulator, putative [Rhodobacterales bacterium
HTCC2083]
gi|206677555|gb|EDZ42042.1| transcriptional regulator, putative [Rhodobacteraceae bacterium
HTCC2083]
Length = 110
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
Query: 34 CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
ISE +L KI L K G V + GR GG+ L I+I V++A +++ VAECF
Sbjct: 2 YGISENYLVKIATQLSKGGFVVSESGRGGGLTLAVLVVDISIGAVLRALKKNEPVAECFG 61
Query: 94 SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
S C ++ +C L L +A AFF L YS+ + + + +K +
Sbjct: 62 S-NTSCAILPTCSLRGPLLEAQEAFFAALVGYSLADVAKAKGYLKDLI 108
>gi|228477644|ref|ZP_04062273.1| Rrf2 family protein [Streptococcus salivarius SK126]
gi|228250533|gb|EEK09744.1| Rrf2 family protein [Streptococcus salivarius SK126]
Length = 149
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 59/143 (41%), Gaps = 8/143 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + +L A + N+ +A + ++ + + K L L KA ++ +V+
Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDFMAGSVGVNPVIIRKTLSQLRKADLI-SVQ 59
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
GG L + ++I +L V +A + S + + CP+ + L L
Sbjct: 60 RGTGGASLLKDPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRNIHGILDQSLED 119
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A L + ++ ++++ +
Sbjct: 120 VQMAMEKELEKKTLAGILKDAKA 142
>gi|120435754|ref|YP_861440.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
KT0803]
gi|117577904|emb|CAL66373.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
KT0803]
Length = 144
Score = 78.8 bits (193), Expect = 2e-13, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGI+ Y A+ + + +IA F KIL L K I+ +V+G
Sbjct: 2 FSKACEYGIKASTYIALQSLEGQRVSLKEIAGEIDSPIAFTAKILHQLAKNDILVSVKGP 61
Query: 61 RGGVRLCRPADQ-ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + I + +V A + C +C C L +
Sbjct: 62 YGGFYIPKEKIDVIKLAAIVYAIDGDSVYTGCALGF-NECNASKPCLLHDKFVGIRDELR 120
Query: 120 DVLTQYSIECL 130
++L S+ L
Sbjct: 121 EMLQNTSLYEL 131
>gi|307710681|ref|ZP_07647110.1| transcriptional regulator family protein [Streptococcus mitis
SK321]
gi|307617452|gb|EFN96623.1| transcriptional regulator family protein [Streptococcus mitis
SK321]
Length = 143
Score = 78.8 bits (193), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 61/143 (42%), Gaps = 7/143 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +A + + ++ K++ L AG++ + +G+ G
Sbjct: 3 TKFSVALHILTMIS-ESKETLSSQALAISVGTNASYIRKVIALLKNAGLITSHQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++T+L++ AT+E + + DCP+ ++ + A +
Sbjct: 61 QLSKSPKKMTLLEIYYATQEINHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120
Query: 121 VLTQYSIECLVRN-RSSIKKIFN 142
L ++E ++ N K++ N
Sbjct: 121 ELANQTLEDVIDNLYKQAKQVRN 143
>gi|253754824|ref|YP_003027964.1| transcriptional regulator [Streptococcus suis BM407]
gi|251817288|emb|CAZ55018.1| putative transcriptional regulator protein [Streptococcus suis
BM407]
Length = 139
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ + + IA + ++ + + IL L +AG+VE RG
Sbjct: 1 MQISSRFTIASHILVLLALEGEKEKQTSTSIAGSVGVNPVIIRNILSQLKEAGLVEVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG RL + DQIT+L V +A E E + + C + + L S L A
Sbjct: 61 -IGGARLAQGPDQITLLHVYQAVELFGEKGQLFAFHEQPNLSCQVGRNIHPLLDSRLENA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
+A + L + + L+
Sbjct: 120 QSALENELAKTRLADLLAE 138
>gi|329939769|ref|ZP_08289070.1| Rrf2 family transcriptional regulator, group III [Streptomyces
griseoaurantiacus M045]
gi|329301339|gb|EGG45234.1| Rrf2 family transcriptional regulator, group III [Streptomyces
griseoaurantiacus M045]
Length = 136
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 8/135 (5%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L A ++IAE+ + + + ++L L A +V + GR GG L R
Sbjct: 1 MHALAMLANRRGGSLTSAEIAESLDSNPVLVRRVLGRLRDARLVWSTEGRGGGWSLARAP 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIE 128
IT+ D A E+ + C + + G L + R A A + L +I
Sbjct: 61 RDITLYDAYAAVEDGQVFSRHAHPPNGTCAIGRNIGDLLDAEFRSAERALEEQLRGTTIA 120
Query: 129 CLVRNRSSIKKIFNA 143
L ++++ +A
Sbjct: 121 GL------LRQVLDA 129
>gi|229172640|ref|ZP_04300199.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
gi|228611111|gb|EEK68374.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus MM3]
Length = 143
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + IAE+ + + + K++ L +AG V RG
Sbjct: 1 MKISSRFSIAVHILSILKNNPSSLCTSDYIAESVNTNPVVIRKMMSYLKQAGFVYVNRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 61 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHMHEQPNPDCPIGANIQAVLEVILIQAQS 119
Query: 117 AFFDVLTQYSIECL 130
A ++L ++ L
Sbjct: 120 AMEEILRNITMGHL 133
>gi|315225080|ref|ZP_07866897.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea
F0287]
gi|314944763|gb|EFS96795.1| Rrf2 family transcriptional regulator [Capnocytophaga ochracea
F0287]
Length = 145
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/143 (26%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRI--SQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + Y I ++Y AIH+ +RI +AEA I FL KILQ L + ++ + +G
Sbjct: 2 LSNSSKYAINAVIYLAIHSSASHRIAPKDVAEALHIPTPFLAKILQTLARKKVISSNKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L Q ++ VV+ E+ C K +C C L + ++ + F
Sbjct: 62 GGGFWLSDEEKQAPLMTVVEQIGEADKFIACAMGFK-ECSSEKPCPLHASVQPFRDNFMR 120
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
LT+ SI + + +
Sbjct: 121 ELTENSIASFAQKIADKTAFLSP 143
>gi|134099141|ref|YP_001104802.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
gi|291009886|ref|ZP_06567859.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
gi|133911764|emb|CAM01877.1| rrf2 family protein [Saccharopolyspora erythraea NRRL 2338]
Length = 163
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
Query: 4 TKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
R L + +H +IA + + + + ++L + AG+V + RG
Sbjct: 4 NSRLTVAAHALTWIELHHRREGGTATSERIAGSVNTNPVVIRRLLGRMRDAGLVHSRRGA 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G L RP +++T+ DV +A E + A + +DCP+ + + A
Sbjct: 64 EAGWVLARPLEEMTLRDVYEAIEPAPLFAVHRSEPNLDCPIGSGIRPVMRLAYARVEQAV 123
Query: 119 FDVLTQYSIECLVRN 133
L ++ ++R+
Sbjct: 124 RAELECITLADVLRD 138
>gi|322516853|ref|ZP_08069753.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
ATCC 49124]
gi|322124613|gb|EFX96086.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
ATCC 49124]
Length = 143
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +AE+ + ++ K++ L AG++++ +G+ G
Sbjct: 3 TKFSVALHILTMIS-ESKETLSSQALAESVGTNASYIRKVVALLKNAGLIQSQQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+ + IT+L++ AT+E + + +DCP+ ++ + A
Sbjct: 61 QPSKSPKDITLLNIYFATQEVSHISLFPVHQNSNLDCPVGKHIQAAVSPLFASAEAQLEK 120
Query: 121 VLTQYSIECLVRN 133
L ++E ++ N
Sbjct: 121 ELAHQTLEDVIDN 133
>gi|227549985|ref|ZP_03980034.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
44291]
gi|227077937|gb|EEI15900.1| transcriptional regulator [Corynebacterium lipophiloflavum DSM
44291]
Length = 162
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + T++ L+ + D P +AE I + +L K LQ LV+AGI+ + G
Sbjct: 1 MKLPRGTEWMAHCLVALSACEDIGPLAKHTLAEMFDIPDAYLSKQLQQLVRAGIIRSSAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVL 111
RGG L RPA +T+LDV+K + + C F + G CG+ +
Sbjct: 61 NRGGYFLARPASTVTLLDVIKTVQGDAPLFVCEEVRCRGIFTNDADAIRETGPCGIHHAM 120
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
+A N + D L ++E L +
Sbjct: 121 VEAENRWRDSLATVTVEALTQQ 142
>gi|304311762|ref|YP_003811360.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
gi|301797495|emb|CBL45715.1| Predicted transcriptional regulator [gamma proteobacterium HdN1]
Length = 156
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 59/130 (45%), Gaps = 1/130 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ + K TDY + ++ A R+ +A+ + + + K++ LV A +V + RG
Sbjct: 2 LRIGKLTDYALILMNCMATRPAQLWRMELLADTTRLPQPTVRKLMGQLVAANLVRSERGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
RGG +L R + I++ +++ A E + EC C +G+C + +
Sbjct: 62 RGGYQLSRLPNLISMAEIIIAIEGPIAITECC-EVVPSCERLGACDMEGRWPAINDLILQ 120
Query: 121 VLTQYSIECL 130
+L ++ +
Sbjct: 121 LLRVVTLSDI 130
>gi|228933254|ref|ZP_04096110.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
gi|228826415|gb|EEM72192.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar andalousiensis BGSC 4AW1]
Length = 146
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 MKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL + L
Sbjct: 123 AMEEVLRNIKMGQL 136
>gi|317489305|ref|ZP_07947819.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|316911550|gb|EFV33145.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
Length = 158
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDYG+R ++Y A IAE I +L ++ Q L AGI+E G+
Sbjct: 1 MQLKASTDYGMRAILYLAAQ-GTTCSSKDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL + +L++++A ++ + + V +
Sbjct: 60 HGGYRLAKDPADTNVLEIMEALDDDAKQSTRAKRDARK-GGAMVQEIRQVYDLIEESMDA 118
Query: 121 VLTQYSIECLVR 132
L+ +++ L+
Sbjct: 119 YLSSLTVQMLLD 130
>gi|160935060|ref|ZP_02082446.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753]
gi|156866513|gb|EDO59885.1| hypothetical protein CLOLEP_03936 [Clostridium leptum DSM 753]
Length = 134
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+T DY +R++ + A IAE + F KIL+ LV I+ + +G
Sbjct: 1 MHMTLEADYAVRIVEFLAEQ-GCKTDAHTIAEQTRVPLRFALKILRTLVSQDIIVSYKGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG +L PA++IT+ V++A E + + C C +C V + +
Sbjct: 60 KGGYQLAHPAEEITLRQVIEAVEGPYVLNRCQHDE-YTCGHT-ACRFHHVYNEISQLVRE 117
Query: 121 VLTQY 125
L
Sbjct: 118 KLESV 122
>gi|30795085|ref|NP_851535.1| hypothetical protein pSLA2-L_p113 [Streptomyces rochei]
gi|30698458|dbj|BAC76571.1| hypothetical protein [Streptomyces rochei]
Length = 143
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
L + +H D +A + + + + ++L + AG+V + RG G L
Sbjct: 10 AAHALAWIELHRRIGDGTATSEGVAGSVNTNPVVIRRLLGRMRDAGLVHSRRGADAGWVL 69
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
RP + IT+ DV +A E S A + + CP+ + V + A L +
Sbjct: 70 ARPLEDITLRDVYEAIEPSPLFAMHRSDPNLGCPVGSGIQPAMRPVYARVEEAVRAELAR 129
Query: 125 YSIECLVRN 133
++ ++R+
Sbjct: 130 VTLAEVLRD 138
>gi|256393946|ref|YP_003115510.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Catenulispora acidiphila DSM 44928]
gi|256360172|gb|ACU73669.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
acidiphila DSM 44928]
Length = 159
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 8/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + ++G+ L+ A + P ++AE + +L K LQPLV+AGI+ + G
Sbjct: 1 MQMGEGVEWGLHCLLALAWLEEHTPVATGRLAEIFELPPEYLKKRLQPLVRAGILASSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC-------PLVGSCGLTSVLR 112
RGG L R ++IT++DVV A E C K CG+ +R
Sbjct: 61 ARGGYALARRPEEITLMDVVAAVEGREEAFRCTEIRKQGAGALAEADEFGEPCGIAKAMR 120
Query: 113 KALNAFFDVLTQYSIECLV 131
+A A+ L ++ ++
Sbjct: 121 RAEMAWRRELAAQTVADVM 139
>gi|167836110|ref|ZP_02462993.1| putative transcriptional regulator [Burkholderia thailandensis
MSMB43]
Length = 153
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSLQEGVPLSSDMIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPSCITLLDVCRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|257867558|ref|ZP_05647211.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257873887|ref|ZP_05653540.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
gi|257801614|gb|EEV30544.1| conserved hypothetical protein [Enterococcus casseliflavus EC30]
gi|257808051|gb|EEV36873.1| conserved hypothetical protein [Enterococcus casseliflavus EC10]
Length = 141
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 58/136 (42%), Gaps = 7/136 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y + +IA++ + ++ +I+ L AG++E+ RG+
Sbjct: 1 MKYSTKYSDAIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRIAGLIESQRGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALN 116
+L + +I++LD+ + E+ + +C + G+ VL +
Sbjct: 61 PNP-KLTKEPYEISLLDIYASVEKDQHLLHADKKTNPNCLIGGNIQT--VLEETYDVLQK 117
Query: 117 AFFDVLTQYSIECLVR 132
++ S++ ++
Sbjct: 118 KIEQEMSAISLQSIID 133
>gi|328543025|ref|YP_004303134.1| HTH-type transcriptional regulator rrf2-like protein [polymorphum
gilvum SL003B-26A1]
gi|326412771|gb|ADZ69834.1| Putative HTH-type transcriptional regulator rrf2-like protein
[Polymorphum gilvum SL003B-26A1]
Length = 142
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 4/121 (3%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
RI ++AE + FL IL L +AG++ + RGR+GG L + ++I ++++
Sbjct: 12 KALRIEEVAELSGAPKRFLEHILLDLKRAGLIGSRRGRKGGYELIKEPRHVSIAEILRLI 71
Query: 83 EESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
+ C + DC SC + +V +A+ ++ ++ L + ++
Sbjct: 72 DGPIAPLPCLSRRAYRPCEDCKDEKSCRVRAVFGGFYSAYILMIESLTLADLQQESQPLE 131
Query: 139 K 139
+
Sbjct: 132 R 132
>gi|256389825|ref|YP_003111389.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Catenulispora acidiphila DSM 44928]
gi|256356051|gb|ACU69548.1| transcriptional regulator, BadM/Rrf2 family [Catenulispora
acidiphila DSM 44928]
Length = 155
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L T++ + A + +Q+A + +L K LQ L +AGI+ G
Sbjct: 1 MKLPTSTEWVLHCAATLAQLRPAETASAAQLAAYYDLPAPYLAKQLQALTRAGILSATTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL R A IT+L +V+A + + EC +C L + +
Sbjct: 61 PRGGFRLARAAKDITMLQIVEAVDGAAAPYECREIRQQGRGGLTPDECQETCPLARTMAE 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A+ LT S+ ++
Sbjct: 121 AHTAWRASLTAVSLADILAE 140
>gi|330816101|ref|YP_004359806.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
gladioli BSR3]
gi|327368494|gb|AEA59850.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
gladioli BSR3]
Length = 146
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL A P IA + + + ++ L AGI + G
Sbjct: 1 MNTSSRFAFAVHVLTLLAQQEGVPLSSEYIAGSVNTNPALIRRLTSMLAAAGITTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R IT+L+V +A ++ A + DC + LT + A A
Sbjct: 61 GGGALLAREPGSITLLEVYRAVDDGQLFALHREAPNPDCLVGRHIQGVLTVYIDDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L + ++ ++ +
Sbjct: 121 EASLARRTVADVMAD 135
>gi|228472954|ref|ZP_04057711.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624]
gi|228275536|gb|EEK14313.1| Rrf2 family protein [Capnocytophaga gingivalis ATCC 33624]
Length = 143
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 3/128 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + Y I ++Y AI++ D + +I+E I FL K+LQ L K + + +G
Sbjct: 2 LSNSSKYAINAVLYLAINSSVDRKKGVKEISEVLHIPTAFLAKLLQILAKKKAICSAKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + + D+V+ + + C + C C + ++ + F
Sbjct: 62 GGGFYITPENLKAPLADIVRYIDGGDKFSICLLGIR-SCSEETPCPMHYAVKPFRDEFLQ 120
Query: 121 VLTQYSIE 128
L +++IE
Sbjct: 121 ELERHNIE 128
>gi|257789851|ref|YP_003180457.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|325832443|ref|ZP_08165396.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
gi|257473748|gb|ACV54068.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|325486004|gb|EGC88460.1| transcriptional regulator, Rrf2 family [Eggerthella sp. HGA1]
Length = 158
Score = 78.4 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L TDYG+R ++Y A IAE I +L ++ Q L AGI+E G+
Sbjct: 1 MQLKASTDYGMRAILYLAAQ-GTTCSSKDIAEDMSIPRDYLIQLAQLLRNAGIIEARPGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL + +L++++A ++ + + V +
Sbjct: 60 HGGYRLAKDPADTNVLEIMEALDDDAKQSTRAKRDARK-GGAMVQEIKQVYDLIEESMDA 118
Query: 121 VLTQYSIECLVR 132
L+ +++ L+
Sbjct: 119 YLSSLTVQMLLD 130
>gi|187251464|ref|YP_001875946.1| rrf2 family protein [Elusimicrobium minutum Pei191]
gi|186971624|gb|ACC98609.1| Rrf2 family protein (putative transcriptional regulator)
[Elusimicrobium minutum Pei191]
Length = 150
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/145 (21%), Positives = 66/145 (45%), Gaps = 5/145 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + +L A++ N + +A++ + + + +IL L KA IV++ G
Sbjct: 1 MKTNTRFTTAVHILALLALNKKEANTSALLAKSVNTNPVVVRRILSMLKKANIVDSKPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
+ GV L R I++L++ A + + +C + + L L++A A
Sbjct: 61 K-GVTLKRGPLTISLLEIYDAVKSPSDTFFPLHKNPSKECFIGANIHSALYDPLKEASQA 119
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFN 142
+L++YS++ + R + K++
Sbjct: 120 AEKILSKYSLKDITRPITK-KELLR 143
>gi|152987101|ref|YP_001346310.1| hypothetical protein PSPA7_0924 [Pseudomonas aeruginosa PA7]
gi|150962259|gb|ABR84284.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length = 142
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A H + P IA + + + + + L G V + +G R
Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIAHMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG RL +P IT+LD+ +A S A ++ +C + + L A
Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
+ L ++E L
Sbjct: 121 ERLGSVTLEQLASE 134
>gi|229121497|ref|ZP_04250724.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
gi|228661961|gb|EEL17574.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus 95/8201]
Length = 147
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 5 LKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 64
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 65 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEVILIQAQS 123
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 124 AMEEVLRNITMGQL 137
>gi|296140570|ref|YP_003647813.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Tsukamurella paurometabola DSM 20162]
gi|296028704|gb|ADG79474.1| transcriptional regulator, BadM/Rrf2 family [Tsukamurella
paurometabola DSM 20162]
Length = 159
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M + + ++ V + ++ P S++AE+ + +L K LQ L +AGI E++
Sbjct: 1 MRMNEGVEWAAHVCVLLHWLDEGDLTPVPASRLAESYDLPPAYLGKQLQALARAGITESL 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAEC-------FASHKIDCPLVGSCGLTSV 110
GRRGG+RL R +IT++DVV A E C S CG+
Sbjct: 61 PGRRGGIRLARSTAEITLMDVVSAIEGPSDAFACTEIRQRGMNSDNPRSDFTAPCGIAHA 120
Query: 111 LRKALNAFFDVLTQYSIECLVR 132
+R A ++ L SI L
Sbjct: 121 MRGAELSWRRELAATSIADLAA 142
>gi|118497442|ref|YP_898492.1| transcriptional regulator [Francisella tularensis subsp. novicida
U112]
gi|195536133|ref|ZP_03079140.1| transcriptional regulator family protein [Francisella tularensis
subsp. novicida FTE]
gi|208779236|ref|ZP_03246582.1| transcriptional regulator family protein [Francisella novicida FTG]
gi|254372803|ref|ZP_04988292.1| transcriptional regulator [Francisella tularensis subsp. novicida
GA99-3549]
gi|254374263|ref|ZP_04989745.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|118423348|gb|ABK89738.1| transcriptional regulator [Francisella novicida U112]
gi|151570530|gb|EDN36184.1| transcriptional regulator [Francisella novicida GA99-3549]
gi|151571983|gb|EDN37637.1| conserved hypothetical protein [Francisella novicida GA99-3548]
gi|194372610|gb|EDX27321.1| transcriptional regulator family protein [Francisella tularensis
subsp. novicida FTE]
gi|208745036|gb|EDZ91334.1| transcriptional regulator family protein [Francisella novicida FTG]
Length = 136
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + IT+LD+VK E+ + EC + C L G+C ++ + +
Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECC-DLQKKCSL-GNCMVSGYWKVLNSQLLS 119
Query: 121 VLTQYSIECLVRNRSS 136
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNKDK 135
>gi|42521817|ref|NP_967197.1| hypothetical protein Bd0184 [Bdellovibrio bacteriovorus HD100]
gi|39574347|emb|CAE77851.1| hypothetical protein with transcriptional regulator domain
[Bdellovibrio bacteriovorus HD100]
Length = 151
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPL-VKAGIVETVRG 59
+ ++ +Y + L Y + +++++ +++Q + K GI+ G
Sbjct: 3 KINRKLEYALMALKYMSQKIPGELTTAKEVSDSFHTPFDATARVMQQMAQKGGILRAEYG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG ++ + +++I D+V+ E + +C C + G+C + S + +
Sbjct: 63 ANGGYQITKDLAKVSIHDLVEVIEGPTALVKCLHKEAP-CEIQGTCNIVSPITALNDRLT 121
Query: 120 DVLTQYSIECLVRNRSSI 137
D S++ L+ R ++
Sbjct: 122 DFYKSLSLKELLVERMAM 139
>gi|225018040|ref|ZP_03707232.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum
DSM 5476]
gi|224949186|gb|EEG30395.1| hypothetical protein CLOSTMETH_01976 [Clostridium methylpentosum
DSM 5476]
Length = 153
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + L++ + +D ++A + + + + K+L L KAG++E G
Sbjct: 1 MKISSRFTVAVHCLLFISC-SDEKITSEKLAASVNTNPVVIRKVLGKLKKAGLIEVYSG- 58
Query: 61 RGGVRLCRPADQITILDVVKA--TEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L +PA IT+LD+ A + + ++C + L++ L+ A
Sbjct: 59 TGGAALLKPASSITLLDIFHAADVVDDNQLFS-LHDPNLECAVGKEVLPLLSNPLKTAQQ 117
Query: 117 AFFDVLTQYSIECLVRN 133
A L + ++ L+
Sbjct: 118 ALESSLEKTTLADLLDQ 134
>gi|83312490|ref|YP_422754.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82947331|dbj|BAE52195.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 136
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T + ++ A D ++IAE IS L K+L+ L + G+VE VRG
Sbjct: 1 MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R + T+LD+++ E+ D GL VL + +
Sbjct: 61 GGGYRFSGNRRRTTLLDIIQ-LFETIDPIRHGEREDGD-DTAEGKGLCQVLMEIEDTARA 118
Query: 121 VLTQYSIECLVR 132
+++ +++
Sbjct: 119 TFASITLDTMIK 130
>gi|312129124|ref|YP_003996464.1| transcriptional regulator, badm/rrf2 family [Leadbetterella
byssophila DSM 17132]
gi|311905670|gb|ADQ16111.1| transcriptional regulator, BadM/Rrf2 family [Leadbetterella
byssophila DSM 17132]
Length = 144
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 4/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR +Y A + D + +A+A + KILQ L K I+++ +G
Sbjct: 2 FSKACEYGIRAAIYIAQQSLVDRKVSLKDVAKAIESPTAYTSKILQKLSKNSIIKSDKGP 61
Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + +++ + +V A + C K C C + + +
Sbjct: 62 TGGFSMDKTELEKVKLCSIVYAIDGDAVYTGCGLGLKK-CNENKPCPVHNQFKLIREELK 120
Query: 120 DVLTQYSIECLVRN 133
+L +++ L +
Sbjct: 121 KMLETTTVKTLATD 134
>gi|229591081|ref|YP_002873200.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
gi|229362947|emb|CAY49875.1| putative DNA-binding protein [Pseudomonas fluorescens SBW25]
Length = 145
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 58/141 (41%), Gaps = 7/141 (4%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + + L L + G V + +G +
Sbjct: 6 RLSRM----LHVLIHMGRH-EARATSETIAQMLGTNPVVVRRTLGLLKEKGYVRSEKGHQ 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L +P +IT+LD+ A A ++ +C + + LT +A +
Sbjct: 61 GGWSLGKPLSEITLLDIHNALGTPSLFAIGLSTDHPECLVEQAVNAALTDAFDQAQSLLL 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
L ++ L + +I
Sbjct: 121 ARLGDVTLAQLADDFDQRYRI 141
>gi|291303191|ref|YP_003514469.1| BadM/Rrf2 family transcriptional regulator [Stackebrandtia
nassauensis DSM 44728]
gi|290572411|gb|ADD45376.1| transcriptional regulator, BadM/Rrf2 family [Stackebrandtia
nassauensis DSM 44728]
Length = 160
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 11/140 (7%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L T++ + A + + +Q+AE + +L K LQ LVKAGI+ G
Sbjct: 5 KLPTSTEWLLHSATTLAQLEPGHSASAAQLAEYYDLPPAYLAKQLQVLVKAGILAATTGA 64
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVLR 112
RGG RL +PA ++T+L +V+A + + EC + DC +C L + +
Sbjct: 65 RGGFRLAKPAAEVTLLAIVEAVDGTASPYECREIRQQGRGALPEKDCRR--TCVLAARMY 122
Query: 113 KALNAFFDVLTQYSIECLVR 132
A +A+ L ++ ++
Sbjct: 123 DAHDAWRRSLAGVTLADILD 142
>gi|83309299|ref|YP_419563.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82944140|dbj|BAE49004.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 151
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Query: 4 TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+K+ + I ++ A H P + +I I +L + LQ LV+AGI+ VRG RG
Sbjct: 5 SKKMLFAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQLVRAGILVGVRGPRG 64
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL R +I++ +VV+ + + +G+ + + L
Sbjct: 65 GYRLARERRRISVGEVVRVVRALETAEDPYQDMPAS--QLGAQVIRPMWGDLTEEIMSRL 122
Query: 123 TQYSIECLV 131
SI+ L
Sbjct: 123 DAISIDELC 131
>gi|217077940|ref|YP_002335658.1| Rrf2 family protein [Thermosipho africanus TCF52B]
gi|217037795|gb|ACJ76317.1| Rrf2 family protein [Thermosipho africanus TCF52B]
Length = 148
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 62/131 (47%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE-ACCISELFLFKILQPLVKAGIVETVRG 59
M +T ++DY +R+L+ +I N + I++ I F KIL LV +GI+E+ RG
Sbjct: 1 MAVTMKSDYALRLLLLLSIENKRMSTSELISKCKTSIPYEFAQKILSQLVASGILESSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + IT+ D+V + ++ + CF C + V + F
Sbjct: 61 KFGGYKLVKDPKDITVYDIVTSVDDISSMITCFVPPDKISLAPEICSVNEVWEIVMKRFK 120
Query: 120 DVLTQYSIECL 130
L ++E L
Sbjct: 121 QSLKSVTLEDL 131
>gi|328676938|gb|AEB27808.1| Iron-sulfur cluster regulator IscR [Francisella cf. novicida Fx1]
Length = 136
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAESTGLNIPTVRKLLNQLSLANIVTSRRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + IT+LD+VK E+ + EC + C L G+C ++ + +
Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECC-DLQKKCSL-GNCMVSGYWKVLNSQLLS 119
Query: 121 VLTQYSIECLVRNRSS 136
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNKDK 135
>gi|56460707|ref|YP_155988.1| rf2 family transcriptional regulator [Idiomarina loihiensis L2TR]
gi|56179717|gb|AAV82439.1| Predicted transcriptional regulator, rrf2 family [Idiomarina
loihiensis L2TR]
Length = 138
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 7/131 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + +L++ +P I++ + + + +++ L + G V +V+G
Sbjct: 6 QLSR----ALHILIHLGQKP-HPVTSETISKMLKTNPVVVRRMMGRLRENGYVTSVKGHN 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L R +IT+LD+ KA + F C + + L ++ A
Sbjct: 61 GGWSLSRSLREITLLDIHKALGDKNLFTIGFTEPDSKCLIEKAVNTQLEQTMKDAEAVLL 120
Query: 120 DVLTQYSIECL 130
D + ++ L
Sbjct: 121 DKFAKVTLNDL 131
>gi|322516487|ref|ZP_08069406.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
ATCC 49124]
gi|322125006|gb|EFX96418.1| Rrf2 family transcriptional regulator [Streptococcus vestibularis
ATCC 49124]
Length = 149
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 25/145 (17%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + +L A + N+ +A + ++ + + K L L KA ++ +V+
Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMAGSVGVNPVIIRKTLSQLKKADLI-SVQ 59
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR--- 112
GG L + ++I +L V +A + S + + CP+ + + +L
Sbjct: 60 RGSGGATLAKTPEEINLLQVYRAVDSIGPSGKLFSFHDNPNPACPVGRN--IHGILDQSL 117
Query: 113 -KALNAFFDVLTQYSIECLVRNRSS 136
A L + ++ ++++ +
Sbjct: 118 VDVQMAMEKELEKKTLAGILKDAKA 142
>gi|257065288|ref|YP_003144960.1| transcriptional regulator, BadM/Rrf2 family [Slackia
heliotrinireducens DSM 20476]
gi|256792941|gb|ACV23611.1| transcriptional regulator, BadM/Rrf2 family [Slackia
heliotrinireducens DSM 20476]
Length = 146
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 4/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ ++ + +A + ++ + + +L L AGIV TV
Sbjct: 1 MRFSSRLPVATHILLCIALLGHEHKTTSTFLAGSVGVNPVIVRNVLGQLKAAGIV-TVEP 59
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117
GG L R ++IT+ DV++A E+ V +CP+ L + L A A
Sbjct: 60 GVGGASLARAPEEITLRDVLEAVEDDAGVFRMHEHPSPECPVGRNVHAVLGAELDAAERA 119
Query: 118 FFDVLTQYSIECLVRNRSSI 137
D L ++ L +
Sbjct: 120 MMDRLASATLADLADETRGL 139
>gi|237748113|ref|ZP_04578593.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
gi|229379475|gb|EEO29566.1| transcriptional regulator [Oxalobacter formigenes OXCC13]
Length = 146
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 54/134 (40%), Gaps = 2/134 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + Y +++++ A+ + D I+ I+ IS L + + L AG++ET G
Sbjct: 6 MRIATKERYALKLMVDLALQDKDEYISINSISTRQGISIASLRAVARALTAAGLIETNTG 65
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-F 118
RL R A QI I ++++AT+ F C C C + F
Sbjct: 66 HLYHYRLNRDAAQIPIPEILRATDGKFACTACSEIEPEKCTRHRVCANVLFWEGMQESEF 125
Query: 119 FDVLTQYSIECLVR 132
+ ++ L
Sbjct: 126 IGTKSGQTLCDLTD 139
>gi|327405156|ref|YP_004345994.1| BadM/Rrf2 family transcriptional regulator [Fluviicola taffensis
DSM 16823]
gi|327320664|gb|AEA45156.1| transcriptional regulator, BadM/Rrf2 family [Fluviicola taffensis
DSM 16823]
Length = 144
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR ++ A + D + +AEA + KILQ L + I+ + +G
Sbjct: 2 FSKACEYGIRASIFIAEQSLLDRKVSLKDVAEAIDSPASYTSKILQKLSRNNIINSDKGP 61
Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + +++ + +V A + C K C C + + + +
Sbjct: 62 TGGFSMGKKELEKVKLSSIVFAIDGESIYNGCGLGLKK-CNEKMPCPVHNQFKMIRDQLK 120
Query: 120 DVLTQYSIECLVRNRSS 136
+L ++ L +
Sbjct: 121 KMLETTTVLSLAVDYEK 137
>gi|312863871|ref|ZP_07724109.1| transcriptional regulator [Streptococcus vestibularis F0396]
gi|311101407|gb|EFQ59612.1| transcriptional regulator [Streptococcus vestibularis F0396]
Length = 149
Score = 78.0 bits (191), Expect = 4e-13, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 59/143 (41%), Gaps = 8/143 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + +L A + N+ +A + ++ + + K L L KA ++ +V+
Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMAGSVGVNPVIIRKTLSQLKKADLI-SVQ 59
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
GG L + ++I +L V +A + S + + CP+ + L L
Sbjct: 60 RGSGGATLVKIPEEINLLQVYRAVDSIGPSGKLFSFHENPNPACPVGRNIHGILDQSLED 119
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A L + ++ ++++ +
Sbjct: 120 VQMAMEKELEKKTLAGILKDAKA 142
>gi|83645081|ref|YP_433516.1| transcriptional regulator [Hahella chejuensis KCTC 2396]
gi|83633124|gb|ABC29091.1| predicted transcriptional regulator [Hahella chejuensis KCTC 2396]
Length = 135
Score = 77.6 bits (190), Expect = 4e-13, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
++ + + VL++ A +D P QIAE + + + + + L G V++ +G GG
Sbjct: 5 SRLSRV-LHVLIHLAA-SDKPMTSGQIAEMLSTNPVVVRRTMGMLRVQGYVDSAKGHSGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
L +P ++IT+LDV A +C + + L + + A
Sbjct: 63 WTLIKPLNEITLLDVHNALGGPTLFTLGLTDEHSNCFIERAINEALKTAMDDAEKKLLSR 122
Query: 122 LTQYSIECLVRNRS 135
+ ++ ++ RS
Sbjct: 123 FGEITL-DILAKRS 135
>gi|260881170|ref|ZP_05403779.2| Rrf2 family protein [Mitsuokella multacida DSM 20544]
gi|260849700|gb|EEX69707.1| Rrf2 family protein [Mitsuokella multacida DSM 20544]
Length = 159
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 61/138 (44%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + A + + +A + ++ + + K + L KAG+++ RG
Sbjct: 8 MQISSRFTIAVHIFACIEAFGDQHKLTSDFLAGSVNVNPVIIRKTMSQLQKAGLIKVARG 67
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
GG+++ RP D+IT+ DV +A E + + + CP+ + L L A
Sbjct: 68 -TGGIKITRPLDEITLFDVFQAVEALDHKQLFHFHDNPNPSCPVGRNIHNILDGHLHDAQ 126
Query: 116 NAFFDVLTQYSIECLVRN 133
A L + ++ + +
Sbjct: 127 RALEQELAKTTLADIQKE 144
>gi|312862875|ref|ZP_07723115.1| transcriptional regulator, Rrf2 family [Streptococcus vestibularis
F0396]
gi|311101735|gb|EFQ59938.1| transcriptional regulator, Rrf2 family [Streptococcus vestibularis
F0396]
Length = 143
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +AE+ + ++ K++ L AG++++ +G+ G
Sbjct: 3 TKFSVALHILTMIS-ESKETLSSQALAESVGTNASYIRKVVALLKNAGLIQSQQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+ + IT+L++ AT+E + + +DCP+ ++ + A
Sbjct: 61 QPSKSPKDITLLNIYFATQEVSHISLFPVHQNSNLDCPVGKHIQAAVSPLFVSAEAQLEK 120
Query: 121 VLTQYSIECLVRN 133
L ++E ++ N
Sbjct: 121 ELAHQTLEDVIDN 133
>gi|190890245|ref|YP_001976787.1| transcriptional regulator protein [Rhizobium etli CIAT 652]
gi|218507620|ref|ZP_03505498.1| putative transcriptional regulator protein [Rhizobium etli Brasil
5]
gi|190695524|gb|ACE89609.1| putative transcriptional regulator protein [Rhizobium etli CIAT
652]
Length = 166
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I + + + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL + A++I++LD++ A E C + D C +++ + +
Sbjct: 61 PKGGYRLAKAAEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + SI L
Sbjct: 121 AERVYRAELAKTSIADL 137
>gi|270293196|ref|ZP_06199407.1| Rrf2 family protein [Streptococcus sp. M143]
gi|270279175|gb|EFA25021.1| Rrf2 family protein [Streptococcus sp. M143]
Length = 145
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L A ++ +V
Sbjct: 1 MQISSRFTIATHMLIIIALEGKKTKVTSDFLAASVGVNPVIIRKTLSQLKNAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++ DV +A E +S + + +CP+ + + VL
Sbjct: 60 GTGGTEILKDLQDISLFDVYQAVECLGKSGKLFSFHDNPNPNCPVGAN--IHEVLDQKLL 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
A + L Q S+ +V + +
Sbjct: 118 DIQEAMENQLRQTSLAQVVADAEA 141
>gi|163785917|ref|ZP_02180365.1| transcriptional regulator, BadM/Rrf2 family protein
[Flavobacteriales bacterium ALC-1]
gi|159877777|gb|EDP71833.1| transcriptional regulator, BadM/Rrf2 family protein
[Flavobacteriales bacterium ALC-1]
Length = 144
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGI+ +Y A ++ + +IA+ F KILQ LV+ I+ +V+G
Sbjct: 2 FSKACEYGIKATIYIATNSYEKKRVSLKEIAKEIDSPVAFTAKILQDLVRHQIINSVQGA 61
Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + I + +V A + + C C C + +
Sbjct: 62 YGGFEIEKHKIPTIKLAQIVNAIDGDKIYSGCGLGLH-TCDEEHPCPVHDKFKIVRTELK 120
Query: 120 DVLTQYSIECLV 131
D+L ++E L
Sbjct: 121 DMLENTNLEELA 132
>gi|229150178|ref|ZP_04278400.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
gi|228633297|gb|EEK89904.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus m1550]
Length = 146
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++ R + +L + +AE+ + + + KI+ L +AG V RG
Sbjct: 4 LKISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + +IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQS 122
Query: 117 AFFDVLTQYSIECL 130
A +VL ++ L
Sbjct: 123 AMEEVLRNITMGQL 136
>gi|257468462|ref|ZP_05632556.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
gi|317062725|ref|ZP_07927210.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
gi|313688401|gb|EFS25236.1| conserved hypothetical protein [Fusobacterium ulcerans ATCC 49185]
Length = 136
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ +DY I++++Y + + +I+EA +S F KIL+ L K +VE+ RG
Sbjct: 1 MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEQMSMKFALKILRRLCKVKLVESFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + A+ I++ V++ + F+ + + + S+L
Sbjct: 61 IKGGYKLKKSANDISLRSVIEVIQGDLFINTSLKNVNSAKKVEAD-PVNSLLYSIQEEVK 119
Query: 120 DVLTQYSIECL 130
L+ S + L
Sbjct: 120 AKLSNTSFKDL 130
>gi|254252764|ref|ZP_04946082.1| hypothetical protein BDAG_02004 [Burkholderia dolosa AUO158]
gi|124895373|gb|EAY69253.1| hypothetical protein BDAG_02004 [Burkholderia dolosa AUO158]
Length = 151
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMEEGVPLSSDVIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPHEITLLDVYRAVDDAQLFALHREAPNPACVVGRHIQGVLTDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|295835500|ref|ZP_06822433.1| Rrf2 family protein [Streptomyces sp. SPB74]
gi|197698596|gb|EDY45529.1| Rrf2 family protein [Streptomyces sp. SPB74]
Length = 156
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 5/129 (3%)
Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
L++ +H QIA + + + + ++L + +AG+V + RG G RL
Sbjct: 10 AAHALVWIELHCRAGHEVATSEQIAGSVNTNPVVIRRLLGRMREAGLVCSRRGSDAGWRL 69
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQ 124
RP + +T+ DV +A E S A +CP+ + +V +A A L +
Sbjct: 70 LRPLESMTLRDVYEAIEPSPLFELHRAEPNPECPVGCGIKPAMRTVYDRAEEAVRAELGR 129
Query: 125 YSIECLVRN 133
+++ ++R+
Sbjct: 130 VTLDEVLRD 138
>gi|260587111|ref|ZP_05853024.1| homoserine O-acetyltransferase [Blautia hansenii DSM 20583]
gi|260542601|gb|EEX23170.1| homoserine O-acetyltransferase [Blautia hansenii DSM 20583]
Length = 223
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 42/114 (36%), Gaps = 2/114 (1%)
Query: 21 NDYPNRISQIAEACCISE--LFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+ + + I + + +I+ L K VE V+G+ GG L + I D+
Sbjct: 101 EEQEIKSNTIRLSIGTENIIDIIERIMPVLSKNHYVEGVQGKGGGYCLAKEPKDYRIGDI 160
Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
++ TE C + C C + ++ + + ++ L++
Sbjct: 161 LRLTEGQLVPVACLECNAETCKRANICKTFPMWKEFHHMVNNYFDNITLSDLMK 214
>gi|313905671|ref|ZP_07839032.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
gi|313469495|gb|EFR64836.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium
cellulosolvens 6]
Length = 146
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + +++ +A + + + + KIL L AG++ +RG
Sbjct: 1 MQISSRFTVALHIFTCVDTFKDEHKVTSDFLAASINTNPVIIRKILTQLKNAGLINVIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG+ L R IT DV +A E E + S +CP+ + L L+
Sbjct: 61 -TGGIELTRDLKDITFYDVYQAIEPLEDGDLFRFHESPNPECPVGRNIHLLLDDKLKNIQ 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
A + +Y++ L RS ++++
Sbjct: 120 EAMESEMKKYTLNDL---RSGMQELL 142
>gi|325261733|ref|ZP_08128471.1| Rrf2 family protein [Clostridium sp. D5]
gi|324033187|gb|EGB94464.1| Rrf2 family protein [Clostridium sp. D5]
Length = 128
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+ DY IR+L + + + I +A + E F +KI++ L KAG V RG
Sbjct: 1 MLLTRENDYAIRILRSL--KDKEKHTVKDICQAEEVPEAFAYKIIRKLQKAGFVAVERGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL +T+ DVV A + + C +C + + L K +
Sbjct: 59 AGGCRLGTDLKSLTLYDVVTAVDAEPLIMPCMRQTCSR-NAGDACKVHAELMKIQKVLIE 117
Query: 121 VLTQYSIECL 130
L + L
Sbjct: 118 ELKSRRLFDL 127
>gi|186476514|ref|YP_001857984.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
STM815]
gi|184192973|gb|ACC70938.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum
STM815]
Length = 164
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 10/139 (7%)
Query: 1 MHL--------TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAG 52
M + + R + + VL ++ P IA + + + + ++L L +AG
Sbjct: 4 MRIGWSRAVNTSSRFAFAVHVLALLSLQEGVPLSSDLIAGSVNTNPVLIRRLLAMLAEAG 63
Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSV 110
+ + G GG L R + IT+LD+ +A +++ A + C + + LT +
Sbjct: 64 LTSSQLGAGGGALLARQPEDITLLDIYRAVDDAQLFAMHRETPNPACMVGRNIQTVLTGI 123
Query: 111 LRKALNAFFDVLTQYSIEC 129
+ A A L ++
Sbjct: 124 IGDAQQALEASLASRTLAD 142
>gi|26553766|ref|NP_757700.1| hypothetical protein MYPE3120 [Mycoplasma penetrans HF-2]
gi|26453773|dbj|BAC44104.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 143
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I + + D+ +A + ++ + + KIL L +G++E RG
Sbjct: 1 MQISSRFTIAIHIFVCIKTFEEDHKITSEFLASSTNVNPVIIRKILLQLKSSGLIEVQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
GG + +P DQI+ LD+ KA E E + + +CP+ + L L +
Sbjct: 61 -SGGSSIAKPLDQISFLDIYKAVECIEKGKLFHFHENPNQECPVGKNIHNILDDKLEQVQ 119
Query: 116 NAFFDVLTQYSIECLVRN 133
A D L + +++ ++ +
Sbjct: 120 KALEDELKKITLDQVIND 137
>gi|325473526|gb|EGC76719.1| hypothetical protein HMPREF9353_02145 [Treponema denticola F0402]
Length = 139
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + L+ D I+ + ++ + + KIL L KAG+VET G
Sbjct: 1 MKISVRFTAAVHTLLCIRYFEKDMRVTSDFISASTGVNAVIIRKILLQLQKAGLVETAAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
GG L + AD+IT+LDV A E + CP+ L + L A
Sbjct: 61 V-GGSHLAQAADKITLLDVYNAINEGEEERDIFNFHPKPNSKCPVGSKIHLVLDTKLDDA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
A D L + +I L ++
Sbjct: 120 QKAMKDSLNKTTIADLSKD 138
>gi|317508384|ref|ZP_07966057.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974]
gi|316253341|gb|EFV12738.1| transcriptional regulator [Segniliparus rugosus ATCC BAA-974]
Length = 147
Score = 77.6 bits (190), Expect = 5e-13, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 7/133 (5%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L++ A + P +IA + + + + + L + G+V + +G GG L R
Sbjct: 10 ALHTLLHLAS-KEEPMTSERIAAHLGTNAVVVRRTMAGLREHGLVASAKGHGGGWTLARS 68
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKALNAFFDVLTQYSI 127
+++T+ DV +A C + A ++
Sbjct: 69 LEKLTLFDVYRAVGSPNMFTMIRDEPDHPCMAARAVQTKLAESFDSAEALLLAAFGNITL 128
Query: 128 ----ECLVRNRSS 136
L + S
Sbjct: 129 AALRADLAHDPQS 141
>gi|294102885|ref|YP_003554743.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
colombiense DSM 12261]
gi|293617865|gb|ADE58019.1| transcriptional regulator, BadM/Rrf2 family [Aminobacterium
colombiense DSM 12261]
Length = 141
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ + AI + ++AEA +SE L K+ Q LV+ G V + RG G
Sbjct: 7 ISEAASLAFHGMGLLAI-SGKRMSTKEMAEAINVSEAHLAKVFQRLVRCGFVTSSRGPGG 65
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G L RPA+ I++LD+ +A E C H+ +CP +C +L+K D L
Sbjct: 66 GFELARPAESISLLDIYEAIEGQTDGGYCLL-HQKECPFR-TCIFGDMLKKMTKEIRDFL 123
Query: 123 TQYSIECLVRNR 134
+ ++ L R
Sbjct: 124 REKNLSELARGE 135
>gi|256852121|ref|ZP_05557508.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
gi|260661309|ref|ZP_05862222.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
gi|282933818|ref|ZP_06339168.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
208-1]
gi|297205002|ref|ZP_06922398.1| Rrf2 family transcriptional regulator [Lactobacillus jensenii
JV-V16]
gi|256615533|gb|EEU20723.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
gi|260547764|gb|EEX23741.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
gi|281302060|gb|EFA94312.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
208-1]
gi|297149580|gb|EFH29877.1| Rrf2 family transcriptional regulator [Lactobacillus jensenii
JV-V16]
Length = 142
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I + IA + + + +++ L G++ET +G+
Sbjct: 1 MKYSYKFSDAIHLLSYLEIFKNGDLSSKAIAASIESNPSIIRQLMSDLRNVGLIETRQGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+L R IT+ ++ A + + + CP+ + L + N+
Sbjct: 61 -ASAKLTRKPSAITLFEIYMAIDMDHELIHVDPQTNLKCPVGRNIQTSLNGFYEQIQNSA 119
Query: 119 FDVLTQYSIECLVRN 133
F+ + +++ ++ +
Sbjct: 120 FNQMKAITLQDVIDD 134
>gi|153814508|ref|ZP_01967176.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756]
gi|145848002|gb|EDK24920.1| hypothetical protein RUMTOR_00722 [Ruminococcus torques ATCC 27756]
Length = 95
Score = 77.6 bits (190), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 47 PLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSC 105
L KAGIV +VRG GG L + + I++ DV++A E S +C C + SC
Sbjct: 1 MLKKAGIVRSVRGAGGGYVLVKRLEDISVGDVLRALEGSLEPVDCAGLEPNGGCSVSDSC 60
Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRNR 134
V +K ++ + + ++ LV+
Sbjct: 61 VTKYVWKKINDSINQTVDEIKLDQLVKEN 89
>gi|331265868|ref|YP_004325498.1| transcriptional regulator, putative [Streptococcus oralis Uo5]
gi|326682540|emb|CBZ00157.1| transcriptional regulator, putative [Streptococcus oralis Uo5]
Length = 143
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 24/143 (16%), Positives = 62/143 (43%), Gaps = 7/143 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + D +AE+ + ++ K++ L AG++ + +G+ G
Sbjct: 3 TKFSVALHILTMISESKDT-LSSQALAESVGTNASYIRKVIALLKNAGLITSHQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++T+L++ AT+E + + DCP+ ++ + + +
Sbjct: 61 QLSKSPKKMTLLEIYYATQEIKHISLFPVHQNSNPDCPVGKHIQGAVSPLFASSESQLEK 120
Query: 121 VLTQYSIECLVRN-RSSIKKIFN 142
L ++E ++ N K++ N
Sbjct: 121 KLANQTLEDVIDNLYKQAKQVRN 143
>gi|319946559|ref|ZP_08020794.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC
700641]
gi|319747305|gb|EFV99563.1| Rrf2 family transcriptional regulator [Streptococcus australis ATCC
700641]
Length = 149
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R G VL+ A+ D IA + ++ + + K L L KAG++ RG
Sbjct: 1 MQISSRFTIGTHVLVMIALKGDCTKVTSDMIAGSVGVNPVIIRKTLSQLKKAGLIHVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + + I++LD+ +A E ++ + CP+ S + VL
Sbjct: 61 -TGGAEMAKELEDISLLDIYQAVECLGKTGQLFGFHEHPNPACPIGNS--IHGVLDGKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKI 140
K A + Q S++ +V ++
Sbjct: 118 KIQLAMEKEMAQTSLKEVVEQTKKQMEL 145
>gi|222084808|ref|YP_002543337.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
gi|221722256|gb|ACM25412.1| transcriptional regulator protein [Agrobacterium radiobacter K84]
Length = 166
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + I + A + + IAE +S +L K LQ L AGI++TV G
Sbjct: 1 MKLGEGVEQAIHSVAVLAGLSEGSVLSAAAIAEFHGVSVSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL R I++LD+V A E C + CG+++ +
Sbjct: 61 PKGGYRLARLPKDISLLDIVLAVEGPAPAFRCAEIRQRGPNSLPGKYFTKPCGISAAMLA 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A + L + +I ++ +
Sbjct: 121 AERVYRAELAKTAIADILAD 140
>gi|229167407|ref|ZP_04295145.1| Transcriptional regulator [Bacillus cereus AH621]
gi|228615969|gb|EEK73056.1| Transcriptional regulator [Bacillus cereus AH621]
Length = 120
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 7/121 (5%)
Query: 14 LMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+++ A + + Q+AE +S +L KIL L K G++ + G +GG L +
Sbjct: 1 MLFLAEATPNKLVSVHQLAEMQKVSPTYLSKILTKLTKEGMIHSSSGPKGGYSLSSNWED 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+ LD++ A E + EC C + V+ A + L I L +
Sbjct: 61 ISFLDIIHAIEGKTSLFECCL------HQEPGCLINEVMLAAEEKMEEELRNQKIVDLAK 114
Query: 133 N 133
Sbjct: 115 K 115
>gi|322391381|ref|ZP_08064851.1| Rrf2 family transcriptional regulator [Streptococcus peroris ATCC
700780]
gi|321145807|gb|EFX41198.1| Rrf2 family transcriptional regulator [Streptococcus peroris ATCC
700780]
Length = 145
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 11/147 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQISSRFTIATHMLVIIALEGKENKVTSDFLASSVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + + I++LD+ +A E ++ + + +CP+ + + VL +
Sbjct: 60 GTGGAEIIKNLEDISLLDIYQAVECLGKTGQLFSFHDNPNPNCPVGAN--IHVVLDEKLL 117
Query: 114 -ALNAFFDVLTQYSIECLVRNRSSIKK 139
A L+ S+ LV + + K
Sbjct: 118 KIQQAMEKELSLTSLAQLVTDTEARIK 144
>gi|104774105|ref|YP_619085.1| DeoR family transcriptional regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116514174|ref|YP_813080.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103423186|emb|CAI97984.1| Transcriptional regulator (DeoR family) [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116093489|gb|ABJ58642.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 153
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ + IA + S + + +++ L AG ++T G
Sbjct: 1 MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
L R I++L++ ATE + DC + G+ LT A A
Sbjct: 61 SPDP-ELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAETA 119
Query: 118 FFDVLTQYSIECLVR 132
VL + S++ ++
Sbjct: 120 AEAVLGKISLQDVID 134
>gi|218678083|ref|ZP_03525980.1| putative transcriptional regulator protein [Rhizobium etli CIAT
894]
Length = 166
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 60/137 (43%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I + + + + +A+ +S +L K LQ L AGI++TV G
Sbjct: 1 MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAQFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL + +I++LD++ A E C + D C +++ + +
Sbjct: 61 PKGGYRLAKAPAEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFATPCNISAAMLR 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + SI L
Sbjct: 121 AERVYRAELAKTSIADL 137
>gi|73541761|ref|YP_296281.1| BadM/Rrf2 family transcriptional regulator [Ralstonia eutropha
JMP134]
gi|72119174|gb|AAZ61437.1| transcriptional regulator, BadM/Rrf2 family [Ralstonia eutropha
JMP134]
Length = 144
Score = 77.3 bits (189), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A ++ P S IA + + + +++ L +AG+V ++ G
Sbjct: 1 MTTSSRFAVAVHILTLLASASE-PLPSSLIAGSVGTNPALIRRLIGQLAEAGLVTSIMGS 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPA++IT+LDV +A E + + ++ C + L V +A +A
Sbjct: 60 TGGSTLSRPAERITLLDVFRAVETTALITLHQSAPNPACMVGREITGALRQVADRAQSAM 119
Query: 119 FDVLTQYSIECLVRN 133
+ L + +I ++ +
Sbjct: 120 DNALAEITIASMLAD 134
>gi|254460865|ref|ZP_05074281.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
bacterium HTCC2083]
gi|206677454|gb|EDZ41941.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
bacterium HTCC2083]
Length = 142
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A + + IAE + + + ++L L +AG++ +V+G
Sbjct: 1 MKRNSRLSLALHTLSHMAGDPERKRTSADIAEHAGTNPVVVRRVLGKLREAGLLASVKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
GG L +PA+ IT+ DV A +E + + C + VL +
Sbjct: 61 AGGWSLAKPANSITLADVYIALDERLVSGGEQDAEAMYCSIERDLQTRVADVLGEIEENL 120
Query: 119 FDVLTQYSIECL 130
L++ SI +
Sbjct: 121 VQRLSETSITDV 132
>gi|144901312|emb|CAM78176.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 140
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 54/124 (43%), Gaps = 2/124 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + + P IA + + + + ++L L KAG+V ++RG GG L +
Sbjct: 10 AVHTCTLLGMSDGQPLTSDWIAGSVNTNPVVIRRLLSSLAKAGLVTSIRGSNGGSVLAQL 69
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
+ IT+LD+ +A +E A CP+ L V+ +A A VL+ +
Sbjct: 70 PEAITLLDIQRAVDEDTEPALHNQPPNQKCPVGRGIQPVLRRVIDRAEAAREAVLSTTLL 129
Query: 128 ECLV 131
++
Sbjct: 130 AEVI 133
>gi|56708063|ref|YP_169959.1| hypothetical protein FTT_0970 [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670534|ref|YP_667091.1| hypothetical protein FTF0970 [Francisella tularensis subsp.
tularensis FSC198]
gi|134301877|ref|YP_001121846.1| rrf2 family transcriptional regulator [Francisella tularensis
subsp. tularensis WY96-3418]
gi|187931697|ref|YP_001891681.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
mediasiatica FSC147]
gi|224457151|ref|ZP_03665624.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
tularensis MA00-2987]
gi|254370550|ref|ZP_04986555.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|254874866|ref|ZP_05247576.1| cysteine desulfurase activator complex subunit sufB [Francisella
tularensis subsp. tularensis MA00-2987]
gi|56604555|emb|CAG45603.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320867|emb|CAL08986.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC198]
gi|134049654|gb|ABO46725.1| transcriptional regulator, rrf2 family [Francisella tularensis
subsp. tularensis WY96-3418]
gi|151568793|gb|EDN34447.1| conserved hypothetical protein [Francisella tularensis subsp.
tularensis FSC033]
gi|187712606|gb|ACD30903.1| FeS assembly SUF system regulator [Francisella tularensis subsp.
mediasiatica FSC147]
gi|254840865|gb|EET19301.1| cysteine desulfurase activator complex subunit sufB [Francisella
tularensis subsp. tularensis MA00-2987]
gi|282159259|gb|ADA78650.1| transcriptional regulator, rrf2 family protein [Francisella
tularensis subsp. tularensis NE061598]
Length = 136
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A ++ P ++IAE ++ + K+L L A IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + IT+LD+VK E+ + EC + C L G+C ++ + +
Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECC-DLQKKCSL-GNCMVSGYWKVLNSQLLS 119
Query: 121 VLTQYSIECLVRNRSS 136
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNKDK 135
>gi|189499610|ref|YP_001959080.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides BS1]
gi|189495051|gb|ACE03599.1| transcriptional regulator, BadM/Rrf2 family [Chlorobium
phaeobacteroides BS1]
Length = 136
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 60/142 (42%), Gaps = 14/142 (9%)
Query: 3 LTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG+ ++ A + +I QI E I + +L +I LVK +V++VRG +
Sbjct: 4 LSAKAHYGLAAMLDLADNFGKQRLQIRQIVEKRGIPKNYLEQIFNRLVKNALVKSVRGNK 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L R +T+ +++A E + + + + +
Sbjct: 64 GGYELARSPSSLTVFSILEALEGKLEIV----------SDHDTKAMRQTFGNLEDLVMEY 113
Query: 122 LTQYSIECLV--RNRSSIKKIF 141
++E L+ R S K+I+
Sbjct: 114 F-SMTLEELIVQEKRFSQKQIY 134
>gi|32474577|ref|NP_867571.1| hypothetical protein RB6994 [Rhodopirellula baltica SH 1]
gi|32445116|emb|CAD75118.1| conserved hypothetical protein [Rhodopirellula baltica SH 1]
gi|327541268|gb|EGF27811.1| Transcriptional regulator, Rrf2 [Rhodopirellula baltica WH47]
Length = 141
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 51/135 (37%), Gaps = 7/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + Y +M A+H+ P R S+I I +L +IL+ L G V VR
Sbjct: 1 MVINAAVHYACLAMMDLAMHSNDGQPVRTSEITSRHDIPGPYLVQILRTLKSTGWVRAVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L D IT+LD+ +A + D L +A
Sbjct: 61 GSQGGYVLAVDPDSITLLDIAEAI-GCTESTDRGDQPMSD----AQHALQRRWNEASEES 115
Query: 119 FDVLTQYSIECLVRN 133
L + + +VR
Sbjct: 116 RKRLARVRLGDVVRE 130
>gi|306825709|ref|ZP_07459048.1| Rrf2 family transcriptional regulator [Streptococcus sp. oral taxon
071 str. 73H25AP]
gi|304432070|gb|EFM35047.1| Rrf2 family transcriptional regulator [Streptococcus sp. oral taxon
071 str. 73H25AP]
Length = 145
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 61/144 (42%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ AI + +A + ++ + + K L L KAG++ +V
Sbjct: 1 MQISSRFTIATHMLIIIAIKGRESKVTSDFLAASVGVNPVIIRKTLSQLKKAGLI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++ DV +A E +S + + +CP+ + + VL
Sbjct: 60 GTGGTEIIKDLQDISLFDVYQAVECLGKSGKLFSFHDNPNPNCPVGAN--IHKVLDQKLL 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
A + L Q S+ +V + +
Sbjct: 118 DIQVAMENQLRQMSLAQVVADAEA 141
>gi|241764639|ref|ZP_04762653.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
gi|241365910|gb|EER60547.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax delafieldii
2AN]
Length = 147
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L++ A D P IA+ + + + + + L +AGIV + RG
Sbjct: 1 MKHNSRLSSVLHALLHMAEQ-DGPVTSETIAQCLGTNPVVVRRTMGYLREAGIVTSDRGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG R+ +T+ + +A E A + +C + S L +A
Sbjct: 60 AGGWRIHADLRTVTLRQLHEALGEPAMFAIGNRNEAPECLVEQSVNAALEGTFAEAEALL 119
Query: 119 FDVLTQYSIECL 130
++ ++ L
Sbjct: 120 LKRFSEITLADL 131
>gi|154174545|ref|YP_001408025.1| BadM/Rrf2 family transcriptional regulator [Campylobacter curvus
525.92]
gi|112803332|gb|EAU00676.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter curvus
525.92]
Length = 134
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + L+ + + P + I+ IS+ FL KILQ L K I+++ +
Sbjct: 1 MLFTKASEYALLSLILISQKS-SPVDVDTISNELKISKSFLAKILQNLAKEQILKSYKVA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
GG L I+I +++ A + V EC S CP SC + + N
Sbjct: 60 NGGFALQADPQNISIKTIIECAEKREVSVFECSTSAD-GCPSAKASSCQIWLMFTGLQNK 118
Query: 118 FFDVLTQYSIECLVRN 133
++L + +++
Sbjct: 119 VDEMLDAIKLSDIIKK 134
>gi|227893626|ref|ZP_04011431.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
gi|227864486|gb|EEJ71907.1| transcriptional regulator [Lactobacillus ultunensis DSM 16047]
Length = 154
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ P IA + S + + K++ L KAG++ET G
Sbjct: 1 MKVSTRFSDAIHLLAFIHIYKGQIPLSSENIAGSIETSPVMVRKLMSELRKAGLIETKHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+L +P DQI++LDV A E+ + E C + G+ L +A A
Sbjct: 61 TPDP-KLAKPTDQISLLDVYLAVEKDKPLFEIDHKTNPQCIVGGNIQATLKEYYHQAEVA 119
Query: 118 FFDVLTQYSIECLVR 132
L + +V
Sbjct: 120 AKAKLNNIKLSDVVD 134
>gi|88195436|ref|YP_500240.1| hypothetical protein SAOUHSC_01732 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87202994|gb|ABD30804.1| conserved hypothetical protein [Staphylococcus aureus subsp.
aureus NCTC 8325]
Length = 116
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 1/98 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + YG+ +++ A + IAE +S+L+L +++ PL AG++ +VRG
Sbjct: 1 MKISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI 97
+GG +L PA++I+ D+++ E E S
Sbjct: 61 AKGGYQLRVPAEEISAGDIIRLLEGPITFVESIESEPP 98
>gi|227543670|ref|ZP_03973719.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
gi|300908730|ref|ZP_07126193.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
SD2112]
gi|227186354|gb|EEI66425.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
gi|300894137|gb|EFK87495.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
SD2112]
Length = 150
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 55/135 (40%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L Y ++ + IA++ + + +++ L AG++ T +G
Sbjct: 1 MKYSYKLSDAVHLLSYLHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
RL + +I + D+ +A + + C + G+ L + A
Sbjct: 61 AEP-RLAKKPREINLFDIYQAINMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAA 119
Query: 119 FDVLTQYSIECLVRN 133
F+ + Q S+ ++ +
Sbjct: 120 FNEMKQISLADVIDD 134
>gi|197117827|ref|YP_002138254.1| Rrf2 family transcriptional regulator [Geobacter bemidjiensis Bem]
gi|197087187|gb|ACH38458.1| transcriptional regulator, Rrf2 family [Geobacter bemidjiensis Bem]
Length = 154
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 60/136 (44%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K + + + ++ A + S IA+ IS L K+++ LV G+V+ +RG
Sbjct: 1 MKLNKASLFALISVLELARDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++ T+LD+++ E+ +E H L SV +
Sbjct: 61 GGGYRFAGNVNRTTLLDIIQ-LFETLE-SELDLPHWNKAAEPVVSELHSVTSEIDTVTRA 118
Query: 121 VLTQYSIECLVRNRSS 136
+L ++ +++N +
Sbjct: 119 ILDTVTLATVLKNTRA 134
>gi|257460830|ref|ZP_05625931.1| transcriptional regulator family protein [Campylobacter gracilis
RM3268]
gi|257442161|gb|EEV17303.1| transcriptional regulator family protein [Campylobacter gracilis
RM3268]
Length = 136
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +++ A + +A + I+ K++ L A +V T G
Sbjct: 1 MQVGIKFSLAVHIMLCVAYFREEKVTGDFVAASSGINPAIARKLISQLKNAALVLTTAGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG+ L R A IT+LD+ +A E + CP+ G L + N F
Sbjct: 61 -GGITLARDARLITLLDIYEAVSEEDAMFRLHKGSPSACPVGGKIEAVLAPRFARIQNDF 119
Query: 119 FDVLTQYSIECLVRN 133
L+ S+ L+ +
Sbjct: 120 KKSLSSVSLADLLSD 134
>gi|260430264|ref|ZP_05784238.1| putative transcriptional regulator [Citreicella sp. SE45]
gi|260418736|gb|EEX11992.1| putative transcriptional regulator [Citreicella sp. SE45]
Length = 126
Score = 77.3 bits (189), Expect = 7e-13, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 57/106 (53%)
Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
+ +AE +S L KI+Q L +AG+V+T RG GG L R +I + DVV EE
Sbjct: 14 STADLAEEFQLSRNHLIKIIQKLSRAGLVQTRRGGGGGATLARHPKEIRLGDVVLVLEEG 73
Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
+ ECF + DC + G C LT+ LR A AF + L + ++ +
Sbjct: 74 QALVECFQPNGGDCTIDGCCRLTTRLRVAEMAFIENLNRSTVADVA 119
>gi|313618824|gb|EFR90710.1| Rrf2 family protein [Listeria innocua FSL S4-378]
Length = 83
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRLCRPADQITILDVVKAT 82
GG L ++IT D+++
Sbjct: 61 AHGGYVLNGDPEKITAGDIIRTL 83
>gi|323341526|ref|ZP_08081765.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC
25644]
gi|323091047|gb|EFZ33680.1| Rrf2 family transcriptional regulator [Lactobacillus ruminis ATCC
25644]
Length = 186
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 54/138 (39%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK + ++ A N P I S+ +L KI++ LV G++ + G
Sbjct: 9 MQLTKGFEQAACIMALLATQNRGIPLSSHVIHTRVSSSQTYLKKIMRKLVVGGLITSASG 68
Query: 60 RRGGVRLCRPADQITILDVVKATEESFF------VAECFASHKIDCPLVGSCGLTSVLRK 113
GG L R + IT+L +V A E + + S G+ + +
Sbjct: 69 NSGGFSLAREPEDITLLQIVSAVEGEIHTYPNNGLLDLVFSDFKPIATEGNSAINAAFDA 128
Query: 114 ALNAFFDVLTQYSIECLV 131
A + L + +I L+
Sbjct: 129 ADQLWRQALDKVTIYDLL 146
>gi|161525268|ref|YP_001580280.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|189349994|ref|YP_001945622.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|221201430|ref|ZP_03574469.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans CGD2M]
gi|221208015|ref|ZP_03581021.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans CGD2]
gi|160342697|gb|ABX15783.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans ATCC 17616]
gi|189334016|dbj|BAG43086.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
multivorans ATCC 17616]
gi|221172200|gb|EEE04641.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans CGD2]
gi|221178698|gb|EEE11106.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans CGD2M]
Length = 151
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120
Query: 119 FDVLTQYSIECL 130
L ++ +
Sbjct: 121 EASLASRTLADV 132
>gi|184154498|ref|YP_001842838.1| hypothetical protein LAF_0022 [Lactobacillus fermentum IFO 3956]
gi|260662559|ref|ZP_05863454.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
gi|183225842|dbj|BAG26358.1| conserved hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260553250|gb|EEX26193.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
Length = 141
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R G+ VL Y +H D +++A + + + +++ L KAG++ T G
Sbjct: 1 MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + ++IT+LDV +A E+ + + DCP+ + LT K A
Sbjct: 61 ASPA-LAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKNIQGVLTQEFAKVQAAA 119
Query: 119 FDVLTQYSIECLVRN 133
+ + ++ + N
Sbjct: 120 EAAMQEITLAEITAN 134
>gi|116628074|ref|YP_820693.1| Rrf2 family protein [Streptococcus thermophilus LMD-9]
gi|116101351|gb|ABJ66497.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
thermophilus LMD-9]
Length = 149
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + +L A + N+ +A + ++ + + K L L KA ++ R
Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMARSVGVNPVIIRKTLSQLKKADLIFVQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
G GG L ++I +L V +A + S + + CP+ + L L
Sbjct: 61 G-SGGATLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRNIHGILDQSLED 119
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A L + ++ ++++ +
Sbjct: 120 VQMAMEKELEKKTLAGILKDAKA 142
>gi|154484942|ref|ZP_02027390.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC
27560]
gi|149733895|gb|EDM50014.1| hypothetical protein EUBVEN_02660 [Eubacterium ventriosum ATCC
27560]
Length = 143
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + NDY +A + ++ + + KIL L A ++E RG
Sbjct: 1 MQISSRFTVAVHIFACIKTFENDYKITSDFLAGSTNVNPVIIRKILGQLKGADLIEVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG ++ RP ++IT+LDV KA E E + + CP+ S L L +
Sbjct: 61 -TGGAKITRPLNEITLLDVYKAVECVEGGELFHFHENPNPQCPVGRSIHTVLDGKLEQVQ 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
A L ++E + I+K+
Sbjct: 120 KAMEKELNSITLEDV---EMDIQKLIG 143
>gi|313677740|ref|YP_004055736.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
DSM 4126]
gi|312944438|gb|ADR23628.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
DSM 4126]
Length = 147
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 61/140 (43%), Gaps = 5/140 (3%)
Query: 3 LTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++K++ Y I L++ + + P IS IAE I + FL IL L GI+ + +G+
Sbjct: 2 ISKKSKYAINALVHLGRKYGEGPTLISTIAEEESIPQKFLEAILLELKNDGILGSKKGKG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC----FASHKIDCPLVGSCGLTSVLRKALNA 117
GG L + + + + V++ + + + C F +C +C + K N
Sbjct: 62 GGYYLRKDPETVNLAQVLRLFDGAIALLPCVTFKFYECCEECKDEETCSIREAFLKVRNE 121
Query: 118 FFDVLTQYSIECLVRNRSSI 137
+ +++ L+ +
Sbjct: 122 TVKIFKGQTLKGLLDREKKL 141
>gi|149196442|ref|ZP_01873497.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155]
gi|149140703|gb|EDM29101.1| hypothetical protein LNTAR_14832 [Lentisphaera araneosa HTCC2155]
Length = 147
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 59/136 (43%), Gaps = 2/136 (1%)
Query: 2 HLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L K+ +Y I L + ++ + + +I E + +Q + AGI+++++G
Sbjct: 3 KLNKKVEYAIIALQHMKNVNEGEMSTVKEICELYGAPFDVTSRAMQKMASAGILKSIKGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + ++ +LD++++ +A C C ++ +C + + +
Sbjct: 63 HGGYLIQENLGELKLLDLIESISGDISLANCVIDACK-CDMISTCNIVDPITRLNELLRK 121
Query: 121 VLTQYSIECLVRNRSS 136
+ ++ L++ R S
Sbjct: 122 FFAEMTVLDLLQGRES 137
>gi|89256550|ref|YP_513912.1| hypothetical protein FTL_1231 [Francisella tularensis subsp.
holarctica LVS]
gi|115314981|ref|YP_763704.1| transcriptional regulator [Francisella tularensis subsp. holarctica
OSU18]
gi|156502669|ref|YP_001428734.1| rrf2 family transcriptional regulator [Francisella tularensis
subsp. holarctica FTNF002-00]
gi|167010975|ref|ZP_02275906.1| transcriptional regulator family protein [Francisella tularensis
subsp. holarctica FSC200]
gi|254369464|ref|ZP_04985476.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp.
holarctica FSC022]
gi|290953094|ref|ZP_06557715.1| transcriptional regulator, rrf2 family protein [Francisella
tularensis subsp. holarctica URFT1]
gi|295313700|ref|ZP_06804282.1| transcriptional regulator, rrf2 family protein [Francisella
tularensis subsp. holarctica URFT1]
gi|89144381|emb|CAJ79670.1| conserved hypothetical protein [Francisella tularensis subsp.
holarctica LVS]
gi|115129880|gb|ABI83067.1| probable transcriptional regulator [Francisella tularensis subsp.
holarctica OSU18]
gi|156253272|gb|ABU61778.1| transcriptional regulator, rrf2 family protein [Francisella
tularensis subsp. holarctica FTNF002-00]
gi|157122414|gb|EDO66554.1| hypothetical protein FTAG_00448 [Francisella tularensis subsp.
holarctica FSC022]
Length = 136
Score = 76.9 bits (188), Expect = 8e-13, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A ++ P ++IAE+ ++ + K+L L A IV + RG
Sbjct: 2 LKISKLLDYGLLVVVTIAQNDSNPYSTAKIAESTGLNIPTVRKLLNQLSLANIVTSKRGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + IT+LD+VK E+ + C + C L G+C ++ + +
Sbjct: 62 EGGYTLVSDSRDITVLDIVKCVEKDVNLTGCC-DLQKKCSL-GNCMVSGYWKVLNSQLLS 119
Query: 121 VLTQYSIECLVRNRSS 136
+L++ SI +V N+
Sbjct: 120 LLSKTSIYDIVNNKDK 135
>gi|310815934|ref|YP_003963898.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium
vulgare Y25]
gi|308754669|gb|ADO42598.1| transcriptional regulator, BadM/Rrf2 family [Ketogulonicigenium
vulgare Y25]
Length = 142
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 59/124 (47%), Gaps = 2/124 (1%)
Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L+ A+ + + +I++ IS +L ++ L +A +VE+ RG GG +L RP D
Sbjct: 3 ALVDLALQPESALVNLGEISKRQDISLPYLEQLFVKLRRADLVESARGPGGGYKLARPMD 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECL 130
QI++ D+++A +E+ A + LT+ + + L Q + +
Sbjct: 63 QISVADILEAVDETVSAMHKGAGVSGGLSGSRAQSLTNRLWEGLSAQVYVFLHQTKLSDI 122
Query: 131 VRNR 134
V+NR
Sbjct: 123 VKNR 126
>gi|17548747|ref|NP_522087.1| hypothetical protein RS00405 [Ralstonia solanacearum GMI1000]
gi|17430996|emb|CAD17677.1| probable cog1959, predicted transcriptional regulator protein
[Ralstonia solanacearum GMI1000]
Length = 143
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A P S IA + + + +++ L +AG V + G
Sbjct: 1 MSTSSRFAVAVHILTLLAS-AGEPVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD+IT+LDV +A E +A + C + L V +A +A
Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119
Query: 119 FDVLTQYSIECLVRN 133
L +I ++
Sbjct: 120 EAELAAQTIAGMLTE 134
>gi|229823777|ref|ZP_04449846.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271]
gi|229786816|gb|EEP22930.1| hypothetical protein GCWU000282_01079 [Catonella morbi ATCC 51271]
Length = 150
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 1 MHLTKRTDYGIR--VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ R I ++Y + + ++E+ ++ + + +L L AGI+E+ +
Sbjct: 1 MQISSRFTIAIHSLAVIYL-RQDHQRVTSNFLSESIQVNPVVVRSVLSGLKAAGIIESRQ 59
Query: 59 GRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKA 114
G GG RL +P D IT D+ + + + + DCP+ + + L +
Sbjct: 60 G-SGGSRLAKPLDAITFYDIYVTVDSVDKEGLFNFHPNPHQDCPVGRNIHQAVDGKLIQI 118
Query: 115 LNAFFDVLTQYSIECLVRN 133
A + L + +++ +V +
Sbjct: 119 QAAMENELKRITMQDVVDD 137
>gi|332185085|ref|ZP_08386834.1| transcriptional regulator family protein [Sphingomonas sp. S17]
gi|332014809|gb|EGI56865.1| transcriptional regulator family protein [Sphingomonas sp. S17]
Length = 143
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A H + P IA + + + + + L G V +G GG + +P
Sbjct: 11 LHVLLHMARH-ERPMTSEAIARMLGTNPVVVRRTMAGLRDVGYVGPEKGHGGGWEIAQPL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+ +LDV +A A + DC + + L LR A L S+
Sbjct: 70 QSVCLLDVHRAVGGPRLFAIGHENAHADCAVEKAVNTALDDALRDAETLLVARLDAISLA 129
Query: 129 CLVRN 133
L R+
Sbjct: 130 ELARD 134
>gi|289167407|ref|YP_003445676.1| transcriptional regulator [Streptococcus mitis B6]
gi|307705473|ref|ZP_07642327.1| transcriptional regulator family protein [Streptococcus mitis
SK597]
gi|307707522|ref|ZP_07644004.1| YwnA [Streptococcus mitis NCTC 12261]
gi|288906974|emb|CBJ21808.1| transcriptional regulator [Streptococcus mitis B6]
gi|307616474|gb|EFN95665.1| YwnA [Streptococcus mitis NCTC 12261]
gi|307620931|gb|EFO00014.1| transcriptional regulator family protein [Streptococcus mitis
SK597]
Length = 143
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 22/143 (15%), Positives = 60/143 (41%), Gaps = 7/143 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +A + + ++ K++ L A ++ + +G+ G
Sbjct: 3 TKFSVALHILTMIS-ESKETLSSQALAISVGTNASYIRKVIALLKNADLIHSQQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++T+L++ AT+E + + DCP+ ++ + A +
Sbjct: 61 QLSKSPKKMTLLEIYYATQEINHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120
Query: 121 VLTQYSIECLVRN-RSSIKKIFN 142
L ++E ++ N K++ N
Sbjct: 121 ELANQTLEDVIDNLYKQAKQVRN 143
>gi|317501323|ref|ZP_07959526.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088357|ref|ZP_08337276.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium
3_1_46FAA]
gi|316897287|gb|EFV19355.1| Rrf2 family protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408601|gb|EGG88067.1| hypothetical protein HMPREF1025_00859 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 144
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 9/139 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R I + +D +A + + + + KILQ L AG++E RG
Sbjct: 1 MQISSRFTMAIHMFACIDTFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
GGV + RP +QIT LDV KA E + + CP+ + + VL +
Sbjct: 60 TGGVTITRPLEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEV 117
Query: 115 LNAFFDVLTQYSIECLVRN 133
A + L++ ++ + ++
Sbjct: 118 QKAMEEKLSEMTLADVKKD 136
>gi|86356200|ref|YP_468092.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
gi|86280302|gb|ABC89365.1| putative transcriptional regulator protein [Rhizobium etli CFN 42]
gi|327192636|gb|EGE59577.1| putative transcriptional regulator protein [Rhizobium etli
CNPAF512]
Length = 166
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 62/137 (45%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I + + + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKMSDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG +L + A++I++LD++ A E C + D C +++ + +
Sbjct: 61 PRGGYKLAKAAEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + SI L
Sbjct: 121 AERVYRAELAKTSIADL 137
>gi|319653880|ref|ZP_08007974.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2]
gi|317394416|gb|EFV75160.1| Rrf2 family protein [Bacillus sp. 2_A_57_CT2]
Length = 137
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I L Y A+ D + I+E+ + + + K+L L K G +++ G GG R
Sbjct: 8 AIHSLTYLALQLDRMSTSDAISESAGVHPVRIRKVLSLLKKHGFIKSKEGTGGGFIFARD 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
++ + D+ K T E +C C + + L ++ A + L Y++
Sbjct: 68 LSEVNLWDIYKITSEGALQPKC-PDSNEACVVGANMQRVLINIFLGAEEHLGEYLKHYTL 126
Query: 128 ECLVR 132
+ +V
Sbjct: 127 KNIVD 131
>gi|300693471|ref|YP_003749444.1| transcriptional regulator, rrf2 [Ralstonia solanacearum PSI07]
gi|299075508|emb|CBJ34801.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
PSI07]
Length = 143
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L AG V + G
Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD+IT+LDV +A E +A + C + L V +A +A
Sbjct: 60 SGGSTLARPADRITLLDVFRAVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119
Query: 119 FDVLTQYSIECLVRN 133
L +I ++
Sbjct: 120 EAELAAQTIAGMLAE 134
>gi|56418891|ref|YP_146209.1| hypothetical protein GK0356 [Geobacillus kaustophilus HTA426]
gi|56378733|dbj|BAD74641.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 138
Score = 76.9 bits (188), Expect = 9e-13, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 7/138 (5%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L A IA++ + + + +I+ L KAG+V+ G
Sbjct: 1 MKQISTRFSMAVHILCLLATSPAD-CTGDFIAQSVNTNPVIIRRIMGMLKKAGLVDVRPG 59
Query: 60 RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG L +P DQIT+LDV +A E+ + I CP+ + L + L+ A
Sbjct: 60 V-GGASLRKPPDQITLLDVYRAVGVVETDQLFRIHEHPNIQCPVGRNIEAVLQAELKAAQ 118
Query: 116 NAFFDVLTQYSIECLVRN 133
A + L+Q +I L+
Sbjct: 119 AAMEERLSQTTISRLIAQ 136
>gi|62262806|gb|AAX78104.1| unknown protein [synthetic construct]
Length = 171
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 39/136 (28%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++K DYG+ V++ A ++ P ++IAE ++ + K+L L A IV + RG
Sbjct: 28 LKISKLLDYGLLVVVTIAQNDSNPYSAAKIAEFTGLNIPTVRKLLNQLSLANIVTSKRGI 87
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + IT+LD+VK E+ + EC + C L G+C ++ + +
Sbjct: 88 EGGYTLVSDSRDITVLDIVKCVEKDVNLTECC-DLQKKCSL-GNCMVSGYWKVLNSQLLS 145
Query: 121 VLTQYSIECLVRNRSS 136
+L++ SI +V N+
Sbjct: 146 LLSKTSIYDIVNNKDK 161
>gi|241202984|ref|YP_002974080.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240856874|gb|ACS54541.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 166
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I + + + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKIGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL + +I++LD+V A E S C + D C + + + K
Sbjct: 61 PKGGYRLAKAPKEISLLDIVLAVEGSAPAFRCAEIRQRGPNPVSDRLFAQPCTINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + S+ +
Sbjct: 121 AERVYRAELAKTSLADI 137
>gi|28377816|ref|NP_784708.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|254556000|ref|YP_003062417.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|300767801|ref|ZP_07077711.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308179992|ref|YP_003924120.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28270649|emb|CAD63555.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|254044927|gb|ACT61720.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|300494786|gb|EFK29944.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308045483|gb|ADN98026.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 174
Score = 76.9 bits (188), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K + VL+ A + P + E S ++ KI++ LV AG+V + G
Sbjct: 1 MQLAKSFEQAACVLVLLATQQPEIPLTADVLHERIGGSASYIRKIIRKLVVAGLVTSTSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA------ECFASHKIDCPLVGSCGLTSVLRK 113
GGV L R + I+I DVV A E + + G+ + + +
Sbjct: 61 NNGGVHLARSPEDISITDVVAAIEGTLQTFPNYGYFDRVFKDVEPVAHEGTKVVNGIFSR 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A + D L Q + L++
Sbjct: 121 ADQLWLDFLDQQKLATLIKE 140
>gi|221214010|ref|ZP_03586983.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans CGD1]
gi|221166187|gb|EED98660.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
multivorans CGD1]
Length = 151
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120
Query: 119 FDVLTQYSIECL 130
L ++ +
Sbjct: 121 EASLASRTLADV 132
>gi|188585903|ref|YP_001917448.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350590|gb|ACB84860.1| transcriptional regulator, BadM/Rrf2 family [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 144
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 61/131 (46%), Gaps = 4/131 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R+ + + +Y A++ + + +++A ISE +L ++ PL KA I+ + RG
Sbjct: 1 MKVSTRSKWALACSLYYAVNYSKEVIPLKTVSKALGISEKYLEQLSIPLKKADILASTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L ++IT+ V+ + E E + + L+ + +
Sbjct: 61 TQGGYKLKYHPEKITVYQVLSSI-EPIHFGEDASDQAGEKELLS--VTSEFWDELSQDLI 117
Query: 120 DVLTQYSIECL 130
L Q +++ L
Sbjct: 118 KQLNQITLDDL 128
>gi|229160056|ref|ZP_04288058.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
gi|228623367|gb|EEK80191.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus R309803]
Length = 140
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 13/112 (11%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
+AE +SE FL K+ L KAGIV +V G +GG RL + + ++ DV++A E +
Sbjct: 1 MAEFQGLSETFLSKVFGKLSKAGIVSSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60
Query: 90 ECF------------ASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+C C P SC + V+ +A + L + ++
Sbjct: 61 QCKNIVQNGLLYRDEDEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLA 112
>gi|307702099|ref|ZP_07639106.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
gi|307707432|ref|ZP_07643914.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
gi|322377393|ref|ZP_08051884.1| Rrf2 family protein [Streptococcus sp. M334]
gi|307616384|gb|EFN95575.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
gi|307616586|gb|EFN95776.1| RRF2 family protein [Streptococcus mitis NCTC 12261]
gi|321281593|gb|EFX58602.1| Rrf2 family protein [Streptococcus sp. M334]
Length = 145
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ A L Q S+E +V + S
Sbjct: 118 RIQLAMEAELGQTSLEQVVADAES 141
>gi|111225126|ref|YP_715920.1| RRF2 family protein [Frankia alni ACN14a]
gi|111152658|emb|CAJ64399.1| RRF2 family protein [Frankia alni ACN14a]
Length = 135
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A + + +A A + FL IL L +AG+V++ RG GG +L RPADQIT+
Sbjct: 1 MAASDGQLVKGESLALAQDLPLRFLENILTDLRRAGLVQSRRGADGGYQLGRPADQITVA 60
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
V++ T+ C + L V VL ++ + R
Sbjct: 61 TVIRVTDGPLASVRGRRPEDA-CYEGAAKNLQDVWIAVRVNLRRVLENVTLAEVAGGR 117
>gi|15599364|ref|NP_252858.1| hypothetical protein PA4169 [Pseudomonas aeruginosa PAO1]
gi|218889502|ref|YP_002438366.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
gi|254237049|ref|ZP_04930372.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|254242853|ref|ZP_04936175.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|9950377|gb|AAG07556.1|AE004833_7 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|126168980|gb|EAZ54491.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|126196231|gb|EAZ60294.1| conserved hypothetical protein [Pseudomonas aeruginosa 2192]
gi|218769725|emb|CAW25485.1| putative transcriptional regulator [Pseudomonas aeruginosa LESB58]
Length = 142
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A H + P I + + + + + + L G V + +G R
Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG RL +P IT+LD+ +A S A ++ +C + + L A
Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
+ L ++E L
Sbjct: 121 ERLGSVTLEQLASE 134
>gi|312865004|ref|ZP_07725232.1| transcriptional regulator, Rrf2 family [Streptococcus downei F0415]
gi|311099115|gb|EFQ57331.1| transcriptional regulator, Rrf2 family [Streptococcus downei F0415]
Length = 142
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/137 (19%), Positives = 60/137 (43%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + + + +L Y A++ + IA++ + + +++ L KAG++ T
Sbjct: 1 MKQSHKLSDALHILSYIALNQERLPKISSQTIADSVGTNPGLVRRLMSNLSKAGLLITKV 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALN 116
G +L + I+ DV +A E+ + + S DCP+ + L S ++
Sbjct: 61 GAAKP-QLAKAPKDISFYDVFEAV-ETDGLLKVDESTNPDCPIGSNVPKVLPSFYQRVAK 118
Query: 117 AFFDVLTQYSIECLVRN 133
A +D + S++ ++
Sbjct: 119 AAYDEMRAISLQDMMDE 135
>gi|55821356|ref|YP_139798.1| Rrf2 family protein [Streptococcus thermophilus LMG 18311]
gi|55823278|ref|YP_141719.1| Rrf2 family protein [Streptococcus thermophilus CNRZ1066]
gi|55737341|gb|AAV60983.1| conserved hypothetical protein, Rrf2 family protein [Streptococcus
thermophilus LMG 18311]
gi|55739263|gb|AAV62904.1| conserved hypothetical protein, Rrf2 family protein [Streptococcus
thermophilus CNRZ1066]
gi|312278675|gb|ADQ63332.1| Transcriptional regulator, BadM/Rrf2 family [Streptococcus
thermophilus ND03]
Length = 149
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 8/143 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + +L A + N+ +A + ++ + + K L L KA ++ R
Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMASSVGVNPVIIRKTLSQLKKADLIFVQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
G GG L ++I +L V +A + S + + CP+ + L L
Sbjct: 61 G-SGGSTLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRNIHGILDQSLED 119
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A L + ++ ++++ +
Sbjct: 120 VQMAMEKELEKKTLAGILKDAKA 142
>gi|325571307|ref|ZP_08146807.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
ATCC 12755]
gi|325155783|gb|EGC67979.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
ATCC 12755]
Length = 156
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 59/135 (43%), Gaps = 7/135 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + I +L Y + +IA++ + ++ +I+ L AG++E+ RG+
Sbjct: 17 KYSTKYSDAIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRVAGLIESQRGKP 76
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNA 117
+L + ++I++LD+ + E+ + +C + G+ + VL +
Sbjct: 77 NP-KLTKEPNEISLLDIYASVEKDHHLLHADKKTNPNCLIGGN--IQGVLEETYDVLQKK 133
Query: 118 FFDVLTQYSIECLVR 132
++ S++ ++
Sbjct: 134 IEQEMSAISLQSIIE 148
>gi|168703183|ref|ZP_02735460.1| transcriptional regulator, BadM/Rrf2 family protein [Gemmata
obscuriglobus UQM 2246]
Length = 136
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 37/138 (26%), Positives = 57/138 (41%), Gaps = 12/138 (8%)
Query: 14 LMYCAIHND--YPNRISQIAEACCIS-ELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ A H P R++ IA IS FL +IL L K G+V + RG GG + R
Sbjct: 1 MLELAAHYGDPKPVRLTDIANKHGISSPRFLVQILIQLNKDGLVTSTRGAAGGYHIARAP 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL-------T 123
IT+ DV+ A E + + K PL + L V + A D L
Sbjct: 61 SAITLADVIAAVEGTEQAGTRTKARKPTSPLAAA--LDDVWDRVRTAHEDFLLKQAAILK 118
Query: 124 QYSIECLVRNRSSIKKIF 141
++ LV + ++ +
Sbjct: 119 STTLAQLVDSGEPLQYVI 136
>gi|152981839|ref|YP_001353596.1| transcriptional regulator [Janthinobacterium sp. Marseille]
gi|151281916|gb|ABR90326.1| transcriptional regulator [Janthinobacterium sp. Marseille]
Length = 148
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/132 (23%), Positives = 49/132 (37%), Gaps = 5/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + LM+ A H P +A + + + + + L G+V + RG
Sbjct: 1 MKKNSKLSASLHALMHMA-HQQEPLTSETLAVCMHTNPVVVRRTMAGLRDNGLVTSGRGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L RP +IT+ DV A E + C L S L +A + F
Sbjct: 60 GGGWALARPVAEITLRDVYTALNEPVPLQ--LEEDAPVCQLEHAVSTALNHAYAEAESLF 117
Query: 119 FDVLTQYSIECL 130
L ++ L
Sbjct: 118 ARSLANITLADL 129
>gi|300902070|ref|ZP_07120084.1| Rrf2 family protein [Escherichia coli MS 84-1]
gi|301307042|ref|ZP_07213079.1| Rrf2 family protein [Escherichia coli MS 124-1]
gi|300405815|gb|EFJ89353.1| Rrf2 family protein [Escherichia coli MS 84-1]
gi|300837728|gb|EFK65488.1| Rrf2 family protein [Escherichia coli MS 124-1]
gi|315252301|gb|EFU32269.1| Rrf2 family protein [Escherichia coli MS 85-1]
Length = 148
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
TK +YGIR ++ A+++ + +IA++ E F KILQ L K I+ +V+G
Sbjct: 2 FTKACEYGIRACIFVALNSMEKRRVSLKEIAQSIDSPEYFTAKILQKLAKGKIIYSVQGA 61
Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + I+I D+V + C K C V C + +
Sbjct: 62 QGGFEMEEAKIRTISIEDIVLVIDGEVAFTMCVLGLKK-CSEVNPCPVHHKYKNIKADLK 120
Query: 120 DVLTQYSIECLVRN 133
+++ ++ +V
Sbjct: 121 EMIKTTTVFDMVDQ 134
>gi|283781762|ref|YP_003372517.1| BadM/Rrf2 family transcriptional regulator [Pirellula staleyi DSM
6068]
gi|283440215|gb|ADB18657.1| transcriptional regulator, BadM/Rrf2 family [Pirellula staleyi DSM
6068]
Length = 152
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 34/133 (25%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ Y +R + A + + P S++A A + E FL +IL+ LV GI+ + RG
Sbjct: 1 MKLSRTVAYAVRATLQLAQLEAEGPVPCSRLASAGKMPERFLLQILRNLVTHGILRSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L +PA +I++L+V++A E + + + L L +
Sbjct: 61 VDGGYSLVKPAGEISLLEVIEAIEGPY---DSSLEMGEGLSIDSQTKLQDALNSVTSTTR 117
Query: 120 DVLTQYSIECLVR 132
+ L + L++
Sbjct: 118 NQLEAIKLAQLLK 130
>gi|325125866|gb|ADY85196.1| Transcription regulator (Putative) [Lactobacillus delbrueckii
subsp. bulgaricus 2038]
Length = 153
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ + IA S + + +++ L AG ++T G
Sbjct: 1 MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASYLNTSPVVVRRLMSNLRDAGFIKTTHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
L R I++L++ ATE + DC + G+ LT A A
Sbjct: 61 SPDP-ELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAETA 119
Query: 118 FFDVLTQYSIECLVR 132
VL + S++ ++
Sbjct: 120 AEAVLGKISLQDVID 134
>gi|306833586|ref|ZP_07466713.1| transcriptional regulator superfamily protein [Streptococcus bovis
ATCC 700338]
gi|304424356|gb|EFM27495.1| transcriptional regulator superfamily protein [Streptococcus bovis
ATCC 700338]
Length = 159
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K + + VL A+ ++ P + +++ +S+ +L KIL L +AG++++
Sbjct: 1 MKLNKSFEQAVYVLTMLALQENHTPVKSRVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
+ GG +L + IT+ DV A + V E + V K
Sbjct: 61 KVGGYQLAQSVTTITLKDVFFALDLQANVIEFKHMAHHIYDDTSH--VKQVENKVQQTLE 118
Query: 117 ----AFFDVLTQYSIECLVRNR 134
AF+ L +I L++
Sbjct: 119 KGLFAFYHELDTLTIADLLQEE 140
>gi|229829819|ref|ZP_04455888.1| hypothetical protein GCWU000342_01917 [Shuttleworthia satelles DSM
14600]
gi|229791808|gb|EEP27922.1| hypothetical protein GCWU000342_01917 [Shuttleworthia satelles DSM
14600]
Length = 146
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/138 (18%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + + ++ D + +A + + + + ++ L ++GI+E +G
Sbjct: 1 MQITSKFTIAVHIITAIDYFKDSEKVTSNFLAGSVGANPVIVRNVMGNLKESGIIEISQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT--SVLRKAL 115
+ G+ L + D+IT DV KA + + + + I CP+ + L L++
Sbjct: 61 K-SGISLAKGLDEITFYDVYKAVDCVDGEGLFRFHENPNIKCPVGRNIHLAMDEKLQRVQ 119
Query: 116 NAFFDVLTQYSIECLVRN 133
+ + L +I + +
Sbjct: 120 DTMENELRHITIADVAAD 137
>gi|313123820|ref|YP_004034079.1| transcriptional regulator, badm/rrf2 family [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|312280383|gb|ADQ61102.1| Transcriptional regulator, BadM/Rrf2 family [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 153
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ + IA + S + + +++ L AG ++T G
Sbjct: 1 MKVSTRFSDSIHLLAFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
L R I++L++ ATE + DC + + L+ A A
Sbjct: 61 SPDP-ELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGCNILPTLSDYFSHAETA 119
Query: 118 FFDVLTQYSIECLVR 132
VL + S++ ++
Sbjct: 120 AEAVLGKISLQDVID 134
>gi|229084913|ref|ZP_04217166.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
gi|228698386|gb|EEL51118.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-44]
Length = 146
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 64/147 (43%), Gaps = 8/147 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ ++ R + +L + +AE+ + + + KI+ L +A V RG
Sbjct: 4 LKISSRFSIAVHILSILKNNPSSICTSEFMAESVNTNPVVIRKIMFYLKQAKFVYVNRGP 63
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG L + ++IT+LDV A E + DCP+ + L +L +A +
Sbjct: 64 -GGAGLLKGLNEITLLDVYHAVNVVEEDKLFYIHEQPNPDCPIGANIQAVLEVILVQAQS 122
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++E L S+++ NA
Sbjct: 123 AMEEVLKNITMEHLFE---SLQEKMNA 146
>gi|255283024|ref|ZP_05347579.1| Rrf2 family protein [Bryantella formatexigens DSM 14469]
gi|255266326|gb|EET59531.1| Rrf2 family protein [Bryantella formatexigens DSM 14469]
Length = 150
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 62/146 (42%), Gaps = 8/146 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T R I ++ A + + +A + + ++L L AG V+ G
Sbjct: 1 MQITSRFTVAIHTMLCIAHYEGKKKMTSAALAGSTGADATIIRRLLGQLQTAGYVKVNAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
GG L +P IT+LD+ +A + E+ + + + CP+ + L L +
Sbjct: 61 V-GGAHLIKPLKDITLLDLFRAVDAETRNLFRFYENPDCVCPVGNNIHSVLDGHLCEVQQ 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKIFN 142
A ++ + + +++ L I+ + +
Sbjct: 120 AMYNKMQEINLQTL---YEEIEPLLS 142
>gi|262066052|ref|ZP_06025664.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
gi|291380302|gb|EFE87820.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
Length = 144
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + NDY +A + + + + KIL L AG++ TV
Sbjct: 1 MQISSRFTIALHIFTCVETFKNDYKITSDFLARSINTNPVIIRKILTQLKNAGLI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
GG+ RP +I+ DV +A E E+ + ++ CP+ + + ++L
Sbjct: 60 GTGGISPTRPLKEISFYDVYQAIEPVENGDLFNFHSNPNPQCPVGKN--IHALLDDKLKT 117
Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIF 141
A + + +Y+++ L R ++++
Sbjct: 118 IQLAMENEMKKYTLDDL---RIGMQELL 142
>gi|307709675|ref|ZP_07646127.1| transcriptional regulator family protein [Streptococcus mitis
SK564]
gi|307619573|gb|EFN98697.1| transcriptional regulator family protein [Streptococcus mitis
SK564]
Length = 136
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 56/133 (42%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +A + + ++ K++ L A ++ + +G+ G
Sbjct: 3 TKFSVALHILTMIS-ESKETLSSQALAISVGTNASYIRKVIALLKNADLIHSQQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + +IT+L++ AT+E + + DCP+ ++ + A +
Sbjct: 61 QLSKSPKKITLLEIYYATQEIKHISLFPVHQNSNPDCPVGKHIQGAVSPLFASAESQLEK 120
Query: 121 VLTQYSIECLVRN 133
L ++E ++ N
Sbjct: 121 ELANQTLEDVIDN 133
>gi|229095595|ref|ZP_04226579.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
gi|228687839|gb|EEL41733.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus Rock3-29]
Length = 140
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 52/112 (46%), Gaps = 13/112 (11%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
+AE +SE FL K+ L KAGIV +V G +GG RL + + ++ DV++A E +
Sbjct: 1 MAEFQGLSETFLSKVFGKLSKAGIVNSVPGVKGGYRLAKSPEDVSFWDVIEAVEGPKPIF 60
Query: 90 ECF------------ASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+C A C P SC + V+ +A + L + ++
Sbjct: 61 QCKNIVQNGLLYRDEAEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLA 112
>gi|23014795|ref|ZP_00054594.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 136
Score = 76.5 bits (187), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/132 (25%), Positives = 56/132 (42%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T + ++ A D ++IAE IS L K+L+ L + G+VE VRG
Sbjct: 1 MKLQKATRCALFAILELASGQDRQLSANEIAEKYGISTNHLAKVLRSLGRVGLVEAVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R + T+LD+++ E+ D GL VL + +
Sbjct: 61 GGGYRFSGNRRRTTLLDIIQ-LFETIDPIRNGEREDGD-DTAEGKGLCQVLMEIEDTARA 118
Query: 121 VLTQYSIECLVR 132
+++ +++
Sbjct: 119 TFASITLDTMIK 130
>gi|42782474|ref|NP_979721.1| rrf2 family protein [Bacillus cereus ATCC 10987]
gi|42738400|gb|AAS42329.1| rrf2 family protein [Bacillus cereus ATCC 10987]
Length = 137
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R ++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLSEVNLWHIYQITSEGALQPKC-PESNNQCIVGSNMRKVLFAIFLGAEEHLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|226197420|ref|ZP_03792997.1| putative transcriptional regulator [Burkholderia pseudomallei
Pakistan 9]
gi|225930799|gb|EEH26809.1| putative transcriptional regulator [Burkholderia pseudomallei
Pakistan 9]
Length = 142
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 65/122 (53%), Gaps = 3/122 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ I +I++A IS+ L K++Q L + G +ETVRGR GG+RL + +T+ +VV+ TE
Sbjct: 1 MSTIQEISDAYGISKNHLMKVVQQLGELGWIETVRGRNGGLRLNAQSVTLTVGEVVRKTE 60
Query: 84 ESFFVAECF---ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
F + CF + C + +C L V A AFF L +++I L + S + +
Sbjct: 61 NDFALVGCFAGESESHRSCVIQSACRLRGVFAAAREAFFAELDKHTIGELAQPASQLATL 120
Query: 141 FN 142
Sbjct: 121 LG 122
>gi|323137246|ref|ZP_08072325.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
49242]
gi|322397604|gb|EFY00127.1| transcriptional regulator, BadM/Rrf2 family [Methylocystis sp. ATCC
49242]
Length = 147
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 57/132 (43%), Gaps = 8/132 (6%)
Query: 1 MHL-TKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L + + + + A+H P ++A + L +LQ LV+AGI+++VR
Sbjct: 1 MRLLPRSARFALMAALDVALHARGRPVPSKELAARHDLPPRRLETLLQALVRAGILKSVR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G GG L R ++ + ++V+ + P + + L V+ +A +
Sbjct: 61 GPAGGYELARERRRLCVGEIVRV------ALRAEEEDENQSPALLAAVLEPVIAQAEESA 114
Query: 119 FDVLTQYSIECL 130
L + ++E L
Sbjct: 115 LARLDEITLEDL 126
>gi|330958789|gb|EGH59049.1| hypothetical protein PMA4326_09575 [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 148
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 62/141 (43%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + L A+ + P R +A + + + +L L AG+ + G
Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPA++I +LDV +A E++ + + C + G+ L L +A +A
Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDTELFSSHRVAPCEKCAVGGNILEALAPTLVRARSAL 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
D L + ++ + + + K
Sbjct: 121 EDELAKVTVADIAAEVARLGK 141
>gi|262199394|ref|YP_003270603.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Haliangium ochraceum DSM 14365]
gi|262082741|gb|ACY18710.1| transcriptional regulator, BadM/Rrf2 family [Haliangium ochraceum
DSM 14365]
Length = 165
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 51/132 (38%), Gaps = 5/132 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + P+ +A+ + + L +I+ L G V++ +G GG L
Sbjct: 11 LHVLLHLA-QREGPSTSETLAKVMDTNPVVLRRIMAGLRDRGYVQSSKGHGGGWTLSCDI 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
IT+ DV A ++ S DC + + L V + ++
Sbjct: 70 AAITLGDVYDALGRPPLLSLRHRSEHPDCVVEAAVNDALGDVFDEVEALLLARFEDITLS 129
Query: 129 CLVRNRSSIKKI 140
L + +++
Sbjct: 130 AL--DEEVRRRL 139
>gi|163734987|ref|ZP_02142424.1| transcriptional regulator, rrf2 family, putative [Roseobacter
litoralis Och 149]
gi|161391769|gb|EDQ16101.1| transcriptional regulator, rrf2 family, putative [Roseobacter
litoralis Och 149]
Length = 140
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A + IAE + + + ++L L +AG++ + +G
Sbjct: 1 MKRNSRLSLALHTLGHMAGDPAGVRTSADIAEHAGTNPVVVRRVLGKLREAGLLTSEKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG RL R +IT+ DV A +ES VA C + + SVL +
Sbjct: 61 AGGWRLAREPHEITLADVYLALDESL-VATGEQEVASSCSVENILQRKVASVLEDVERSL 119
Query: 119 FDVLTQYSIECL 130
+ L +I +
Sbjct: 120 VERLAATTIAEV 131
>gi|318041035|ref|ZP_07972991.1| BadM/Rrf2 family transcriptional regulator [Synechococcus sp.
CB0101]
Length = 142
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + +T YG+ LM A + ++S+IA I E +L +++ L ++GI+ ++R
Sbjct: 1 MGFSAKTTYGLLALMELADVAGSGERLQVSEIAARQAIPERYLEQMMTSLRRSGILRSIR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG +L + ADQI + +V+ E + + + ++ +
Sbjct: 61 GARGGYQLAKAADQILLSEVILCLEGEPNTVDPSSGSP------ERQVINALADELRRQR 114
Query: 119 FDVLTQYSIECLVRNRSS 136
L ++ L +R +
Sbjct: 115 TTRLAATTLADLQHDRDA 132
>gi|159038768|ref|YP_001538021.1| BadM/Rrf2 family transcriptional regulator [Salinispora arenicola
CNS-205]
gi|157917603|gb|ABV99030.1| transcriptional regulator, BadM/Rrf2 family [Salinispora arenicola
CNS-205]
Length = 169
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L T++ + A + +Q+A + +L K LQ LVKAG++ G
Sbjct: 1 MKLPISTEWLLHCAATLAQLDAGSTASAAQLARYYDLPAPYLAKQLQALVKAGVLVATTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
GG RL +PA +IT+L +V+A + C +C + C L +
Sbjct: 61 PTGGFRLAQPASEITLLRIVEAVGGTSPPYVCREIRQQGQGALPADECQNM--CVLAEKM 118
Query: 112 RKALNAFFDVLTQYSIECLVR 132
+A A+ L S+ +V
Sbjct: 119 TEAHEAWRRSLAGVSLADIVA 139
>gi|315651088|ref|ZP_07904122.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
3986]
gi|315486678|gb|EFU77026.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
3986]
Length = 144
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 31/146 (21%), Positives = 64/146 (43%), Gaps = 9/146 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + + + +A + + + + KIL L AG++ RG
Sbjct: 1 MQISSKFTVALHIFTCVDTFGNEYKITSDFLAGSINTNPVIIRKILSQLKNAGLIMVARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GGV + RP ++IT DV +A + E+ + A CP+ + L L+
Sbjct: 61 -TGGVEITRPLNEITFYDVYEAIDPVENGDLFSFHAGPNPQCPVGRNIHVLLDDKLKAVQ 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIF 141
A + + +Y+++ L +S +K++
Sbjct: 120 LAMENEMKKYTLDDL---KSEMKELL 142
>gi|255264484|ref|ZP_05343826.1| transcriptional regulator [Thalassiobium sp. R2A62]
gi|255106819|gb|EET49493.1| transcriptional regulator [Thalassiobium sp. R2A62]
Length = 143
Score = 76.1 bits (186), Expect = 1e-12, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + L + A D ++IA+ + + + ++L L AG++ + RG
Sbjct: 1 MKRNSCLSLALHALSHMAYDTDDAQTSAEIADHAGTNPVVVRRVLGKLRAAGLLTSERGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG RL R IT+ DV A E+ V C + + +L++ +
Sbjct: 61 SGGWRLGRETKHITLADVYAALGENL-VVSGQRIKTDTCAVERALDVRVQQILKEIEQSL 119
Query: 119 FDVLTQYSIECL 130
+ L Q +I +
Sbjct: 120 VERLGQTTIADV 131
>gi|289167495|ref|YP_003445764.1| hypothetical protein smi_0647 [Streptococcus mitis B6]
gi|288907062|emb|CBJ21896.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 145
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGRENKVTSDFLAASVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ A L Q S+E +V + S
Sbjct: 118 RIQLAMEAELGQTSLEQVVADAES 141
>gi|28869602|ref|NP_792221.1| hypothetical protein PSPTO_2406 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28852844|gb|AAO55916.1| conserved protein of unknown function [Pseudomonas syringae pv.
tomato str. DC3000]
gi|331018967|gb|EGH99023.1| hypothetical protein PLA106_23258 [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 148
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + L A+ + P R +A + + + +L L AG+ + G
Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPA++I +LDV +A E++ + + C + G+ L L +A A
Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDTELFSSHRVAPCEQCAVGGNILEALAPTLGRARTAL 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
D L + ++ + + + K
Sbjct: 121 EDELAKVTVADIAAEVARLGK 141
>gi|144900811|emb|CAM77675.1| Rrf2-like transcriptional regulator protein [Magnetospirillum
gryphiswaldense MSR-1]
Length = 136
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T + ++ A +IA+ IS L K+L+ L +AG++E VRG
Sbjct: 1 MKLQKATRCALFAILELAGDPGRQMSAHEIADKYGISTNHLAKVLRSLGRAGLLEAVRGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R + T+LDV++ E +A P G+ L VL + +
Sbjct: 61 GGGYRFSGSVKRTTLLDVIQLFETIDPLARGEREDGDGTPGGGA--LCEVLTEIEDIARA 118
Query: 121 VLTQYSIECLVR 132
S+E +++
Sbjct: 119 TFASISLETMLK 130
>gi|206969275|ref|ZP_03230230.1| rrf2 family protein [Bacillus cereus AH1134]
gi|218235528|ref|YP_002368113.1| rrf2 family protein [Bacillus cereus B4264]
gi|206736316|gb|EDZ53474.1| rrf2 family protein [Bacillus cereus AH1134]
gi|218163485|gb|ACK63477.1| rrf2 family protein [Bacillus cereus B4264]
gi|326941103|gb|AEA16999.1| RRF2 family protein [Bacillus thuringiensis serovar chinensis
CT-43]
Length = 137
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R
Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
D+I + + + T E +C C + + L ++ A + L Y++
Sbjct: 68 LDEINLWHIYQITSEGALQPKC-PESNNQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTM 126
Query: 128 ECLVR 132
+ +V
Sbjct: 127 KEVVD 131
>gi|49076390|gb|AAT49554.1| PA4169 [synthetic construct]
Length = 143
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL + A H + P I + + + + + + L G V + +G R
Sbjct: 6 RLSRM----LHVLTHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG RL +P IT+LD+ +A S A ++ +C + + L A
Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
+ L ++E L
Sbjct: 121 ERLGSVTLEQLASE 134
>gi|213971257|ref|ZP_03399374.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|301383893|ref|ZP_07232311.1| hypothetical protein PsyrptM_14720 [Pseudomonas syringae pv. tomato
Max13]
gi|302063596|ref|ZP_07255137.1| hypothetical protein PsyrptK_26743 [Pseudomonas syringae pv. tomato
K40]
gi|302131005|ref|ZP_07256995.1| hypothetical protein PsyrptN_06391 [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213924010|gb|EEB57588.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 148
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + L A+ + P R +A + + + +L L AG+ + G
Sbjct: 1 MPTSSRFVVAVHTLAALAVSDGRPLRSEDLAYSANTGAVVIRGLLSRLSTAGLTRSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPA++I +LDV +A E++ + + C + G+ L L +A A
Sbjct: 61 GGGALLARPAEKIRLLDVYEAVEDTELFSSHRMAPCEQCAVGGNILEALAPTLGRARTAL 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
D L + ++ + + + K
Sbjct: 121 EDELAKVTVADIAAEVARLGK 141
>gi|167748622|ref|ZP_02420749.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662]
gi|167651936|gb|EDR96065.1| hypothetical protein ANACAC_03395 [Anaerostipes caccae DSM 14662]
Length = 145
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + + +L+ A + P + ++E +S+ +L KI++ LV AG+V++ G
Sbjct: 1 MKIKGSLEQAVCILLVIAHTKGHAPVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
++GG L R I++LDV +A E + + + + + SV +
Sbjct: 61 KKGGFVLKRAPKNISLLDVFEAIESTAPFLSTTNLVDKVFPKEKMIAHEKEQQIISVFTR 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A+ L+Q++++ +V
Sbjct: 121 AEQAYRQSLSQFTLDHVVAE 140
>gi|300812053|ref|ZP_07092503.1| transcriptional regulator, Rrf2 family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|313122806|ref|YP_004033065.1| transcriptional regulator, badm/rrf2 family [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
gi|300496979|gb|EFK32051.1| transcriptional regulator, Rrf2 family [Lactobacillus delbrueckii
subsp. bulgaricus PB2003/044-T3-4]
gi|312279369|gb|ADQ60088.1| Transcriptional regulator, BadM/Rrf2 family [Lactobacillus
delbrueckii subsp. bulgaricus ND02]
Length = 142
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 54/135 (40%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L+Y I D IA + + + ++ L KAG+++T +G
Sbjct: 1 MKFSHKLSDAVHLLVYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
L + ++I++ D+ A + + CP+ G+ L + A
Sbjct: 61 AEP-ELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119
Query: 119 FDVLTQYSIECLVRN 133
F + + S+ +V
Sbjct: 120 FAKMREISLREIVDQ 134
>gi|227544764|ref|ZP_03974813.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
gi|300908989|ref|ZP_07126452.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
SD2112]
gi|227185250|gb|EEI65321.1| transcriptional regulator [Lactobacillus reuteri CF48-3A]
gi|300894396|gb|EFK87754.1| Rrf2 family transcriptional regulator [Lactobacillus reuteri
SD2112]
Length = 151
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 4/146 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I P + IA S + + +++ L KAG++ TV G
Sbjct: 1 MKISTRFSDSIHILAFINICQGIIPLTSNNIASTIETSPVVVRRLMSALNKAGLINTVHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + I++ DV A E + C + G+ L ++A A
Sbjct: 61 AADPALA-KSPENISLYDVFLAIEGDAHLFTIDERTNPQCIVGGNIQETLDGFYQQAETA 119
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNA 143
L + S++ ++ + + +A
Sbjct: 120 AKAKLARISLQDVIDTIRVKQALKDA 145
>gi|300812882|ref|ZP_07093277.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
gi|300496218|gb|EFK31345.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus PB2003/044-T3-4]
Length = 152
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ + IA + S + + +++ L AG ++T G
Sbjct: 1 MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
L R I++L++ ATE + DC + G+ LT A A
Sbjct: 61 SPDP-ELLREPKDISLLEIYLATEGKSPLFAIDHETNPDCIVGGNIQPTLTDYFSHAEIA 119
Query: 118 FFDVLTQYSIECLVR 132
VL + S++ ++
Sbjct: 120 AEAVLGKISLQDVID 134
>gi|52142135|ref|YP_084695.1| transcriptional regulator [Bacillus cereus E33L]
gi|51975604|gb|AAU17154.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
cereus E33L]
Length = 137
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R +++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLEEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|229154646|ref|ZP_04282763.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
gi|228629044|gb|EEK85754.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus ATCC 4342]
Length = 137
Score = 76.1 bits (186), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 11/110 (10%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
+AE +SE FL K+ L KA IV +V G +GG RL + + I+ DV++A E +
Sbjct: 1 MAEFQGLSETFLSKVFGKLSKADIVNSVPGVKGGYRLAKSPEDISFWDVIEAVEGPKPIF 60
Query: 90 EC----------FASHKIDC-PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+C C P SC + V+ +A + L + ++
Sbjct: 61 QCKNIVQNGLLYRDEACNSCEPSNSSCTINLVMLEAEEHMREFLRKKTLA 110
>gi|168705374|ref|ZP_02737651.1| possible transcriptional regulator, Rrf2 family protein [Gemmata
obscuriglobus UQM 2246]
Length = 140
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 55/133 (41%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R VL A +D IA + + + + +IL L +AG+V T G
Sbjct: 1 MTRSSRFVVAAHVLTLLA-RSDGALTSEYIAGSVNTNPVVIRRILAVLARAGLVATQEGT 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG RL +PA +IT+ V +A E A CP+ G L LR A A
Sbjct: 60 GGGGRLAKPAAEITLRAVYEAVEPDALFALHPRDPNPLCPVGGGIQSALEPTLRAAETAL 119
Query: 119 FDVLTQYSIECLV 131
L S+ LV
Sbjct: 120 LGSLAGTSVADLV 132
>gi|165937166|ref|ZP_02225731.1| HTH-type transcriptional regulator IscR [Yersinia pestis biovar
Orientalis str. IP275]
gi|165915029|gb|EDR33641.1| HTH-type transcriptional regulator IscR [Yersinia pestis biovar
Orientalis str. IP275]
Length = 118
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 47 PLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
L K G+V +VRG GG L + A I + V+ A +ES C K C C
Sbjct: 2 RLRKNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNRCL 59
Query: 107 LTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
++ R L ++ LV N+ ++
Sbjct: 60 THTLWRDLSERISSFLNNITLAELVNNQDILE 91
>gi|256787721|ref|ZP_05526152.1| hypothetical protein SlivT_24808 [Streptomyces lividans TK24]
gi|289771609|ref|ZP_06530987.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289701808|gb|EFD69237.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 144
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + + QIA + + + + ++L L ++G+VE+
Sbjct: 1 MSANSRLTIAAHALAWIGLYQRQGHEVATSEQIAASANTNPVVIRRLLGELRRSGLVESR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RG G L R +T+LDV +A E A + C + + V
Sbjct: 61 RGVGAGWSLARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGHGIQPVMRDVYEGIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
L + ++E ++RN
Sbjct: 121 ETVRHELARVTLEDVLRN 138
>gi|332367121|gb|EGJ44857.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK1059]
Length = 170
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 61/148 (41%), Gaps = 12/148 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 79
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 80 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137
Query: 114 -ALNAFFDVLTQYSIECLVRN-RSSIKK 139
A L Q S++ +V + IK+
Sbjct: 138 AIQAAMEAELAQTSLDEVVAATKKEIKE 165
>gi|313205515|ref|YP_004044692.1| transcriptional regulator, badm/rrf2 family [Riemerella
anatipestifer DSM 15868]
gi|312444831|gb|ADQ81186.1| transcriptional regulator, BadM/Rrf2 family [Riemerella
anatipestifer DSM 15868]
gi|315023387|gb|EFT36397.1| rrf2 family protein (putative transcriptional regulator)
[Riemerella anatipestifer RA-YM]
gi|325335053|gb|ADZ11327.1| Predicted transcriptional regulator [Riemerella anatipestifer
RA-GD]
Length = 144
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y IR + A N+ + +I+ + F+ KILQ L KA I+E+VRG
Sbjct: 2 FSKACEYAIRSAICIAQKRLNNQRVNVKEISASIDAPVAFIAKILQQLCKANIIESVRGH 61
Query: 61 RGGVRLC-RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + +I I D++ A + S +C K +C V C + + R+
Sbjct: 62 QGGFSIDIEQLKEIKIYDIIVAIDGSGLFTKCGLGLK-ECSSVNPCPVHNDFREIKAKLE 120
Query: 120 DVLTQYSIECLV 131
++ YS+ L
Sbjct: 121 NITKSYSLYDLA 132
>gi|253701416|ref|YP_003022605.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Geobacter sp. M21]
gi|251776266|gb|ACT18847.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M21]
Length = 154
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/133 (24%), Positives = 59/133 (44%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K + + + ++ A + S IA+ IS L K+++ LV G+V+ +RG
Sbjct: 1 MKLNKASLFALISVLELASDPERQLSTSDIADKYGISSHHLAKVMRNLVHQGVVQAMRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++ T+LD+++ E+ +E H L SV +
Sbjct: 61 GGGYRFAGNVNRTTLLDIIQ-LFETLE-SELDLPHWNKAAEPVISELHSVTSEIDTVTRA 118
Query: 121 VLTQYSIECLVRN 133
+L ++ L++N
Sbjct: 119 ILDTITLSTLLKN 131
>gi|28379895|ref|NP_786787.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|254558035|ref|YP_003064452.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|300769029|ref|ZP_07078919.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308182109|ref|YP_003926237.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28272736|emb|CAD65665.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|83778489|gb|ABC47132.1| putative transcriptional regulator [Lactobacillus plantarum]
gi|254046962|gb|ACT63755.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|300493441|gb|EFK28619.1| Rrf2 family transcriptional regulator [Lactobacillus plantarum
subsp. plantarum ATCC 14917]
gi|308047600|gb|ADO00144.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 141
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 58/138 (42%), Gaps = 4/138 (2%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ +D ++ Y A+H D + IA + + +++ L KAG++ +VRG
Sbjct: 4 TQLSD-ATHIMAYIALHTDDQLKSEHIASSLNTDPTMVRRMMSKLRKAGLLTSVRGVARP 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
C + IT+ D+ A + CP+ + N+
Sbjct: 63 TLAC-SPNDITLKDIYVAVVAKRNFLNVDHNTSETCPVGSVIPRVMEKYYCDIQNSAEAR 121
Query: 122 LTQYSIECLVRNRSSIKK 139
+++ +++ ++ + S++++
Sbjct: 122 MSRVTLQDIIDDISAVQQ 139
>gi|46201310|ref|ZP_00055264.2| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 144
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 51/126 (40%), Gaps = 7/126 (5%)
Query: 9 YGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ I ++ A H P + +I I +L + LQ +V+AGI+ VRG RGG RL
Sbjct: 3 FAIEAVLDIAYHAGGEPVQSREITRRQGIPRRYLEQTLQQMVRAGILVGVRGPRGGYRLA 62
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDVLTQY 125
R +I++ +VV+ E D P G + + L
Sbjct: 63 RERRRISVGEVVRVVRA----LETAEDPYQDMPASELGKQVIRPMWGDLTEEIMARLDAI 118
Query: 126 SIECLV 131
SI+ L
Sbjct: 119 SIDELC 124
>gi|227514141|ref|ZP_03944190.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
gi|227087512|gb|EEI22824.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
Length = 143
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R G+ VL Y +H D +++A + + + +++ L KAG++ T G
Sbjct: 3 MKYSHRVSDGVHVLSYVYLHQDTKISSARLASSIDSNPSLVRRLMSRLTKAGLLVTHPGT 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + ++IT+LDV +A E+ + + DCP+ + LT K A
Sbjct: 63 ASPA-LAKEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKNIQGVLTQEFAKVQAAA 121
Query: 119 FDVLTQYSIECLVRN 133
+ + ++ + N
Sbjct: 122 EAAMQEITLAEITAN 136
>gi|213965359|ref|ZP_03393555.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium
amycolatum SK46]
gi|213951975|gb|EEB63361.1| transcriptional regulator, BadM/Rrf2 family [Corynebacterium
amycolatum SK46]
Length = 157
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 5/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT +D +RV+ A+ +++AE+ S + K++ LV+ G ++ V+G
Sbjct: 1 MQLTLFSDLSLRVITLMAMGEPGRKYTAAEVAESLNASRAHVSKVVSRLVELGFLDAVKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG+ L A ++ +++ E+ V +C DCPL+ +C L L A AFF
Sbjct: 61 RNGGIYLRDSATDKSVGKLLRTL-ENNEVVDCVG---TDCPLLPTCLLRGKLAAAQEAFF 116
Query: 120 DVLTQYSIECLV 131
L I L+
Sbjct: 117 AALDPVLIADLI 128
>gi|299068911|emb|CBJ40152.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
CMR15]
Length = 148
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L +AG V + G
Sbjct: 6 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLAEAGFVTSQMGA 64
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD+IT+LDV +A E +A ++ C + L V +A +A
Sbjct: 65 SGGSTLARPADRITLLDVFRAVESPVLIALPYSQPNPACEVGREITGVLERVTARAQSAM 124
Query: 119 FDVLTQYSIECLVRN 133
L +I ++
Sbjct: 125 EAELAAQTIAGMLAE 139
>gi|226952787|ref|ZP_03823251.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC
27244]
gi|226836490|gb|EEH68873.1| Rrf2 family transcriptional regulator [Acinetobacter sp. ATCC
27244]
Length = 139
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + +IA + + + + + L AG +++V+G +GG L
Sbjct: 2 LHVLLHMARQ-NKIFTSEEIAHMLSTNAVVVRRTMAGLKNAGFIQSVKGPKGGWHLIADL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
++ T+LD+ A E A +C + + L +++A + L ++
Sbjct: 61 EKTTLLDIYNAVGEPTIFAIGNERENPECGVERVVNEALEDAMQQAQDILLAKLKATTLA 120
Query: 129 CLV 131
L
Sbjct: 121 DLA 123
>gi|170702204|ref|ZP_02893109.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
gi|172060143|ref|YP_001807795.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|170132890|gb|EDT01313.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
gi|171992660|gb|ACB63579.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MC40-6]
Length = 151
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + L + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLIDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|196042814|ref|ZP_03110053.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|225865368|ref|YP_002750746.1| rrf2 family protein [Bacillus cereus 03BB102]
gi|196026298|gb|EDX64966.1| rrf2 family protein [Bacillus cereus 03BB108]
gi|225790074|gb|ACO30291.1| rrf2 family protein [Bacillus cereus 03BB102]
Length = 137
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R ++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLSEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|30021504|ref|NP_833135.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|228973382|ref|ZP_04133970.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001]
gi|29897059|gb|AAP10336.1| RRF2 family protein [Bacillus cereus ATCC 14579]
gi|228786362|gb|EEM34353.1| Rrf2 [Bacillus thuringiensis serovar thuringiensis str. T01001]
Length = 131
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R
Sbjct: 2 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 61
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
D+I + + + T E +C C + + L ++ A + L Y++
Sbjct: 62 LDEINLWHIYQITSEGALQPKC-PESNNQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTM 120
Query: 128 ECLVR 132
+ +V
Sbjct: 121 KEVVD 125
>gi|307707011|ref|ZP_07643808.1| transcriptional regulator family protein [Streptococcus mitis
SK321]
gi|307617537|gb|EFN96707.1| transcriptional regulator family protein [Streptococcus mitis
SK321]
Length = 145
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 59/143 (41%), Gaps = 11/143 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRS 135
+ A L Q S+E +V +
Sbjct: 118 RIQLAMEAELGQTSLEQVVADAE 140
>gi|254254969|ref|ZP_04948286.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158]
gi|124899614|gb|EAY71457.1| hypothetical protein BDAG_04291 [Burkholderia dolosa AUO158]
Length = 146
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA + + + ++L L G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSETIATMLGTNAVVVRRLLGGLRDCGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++VL+ A A
Sbjct: 61 GGWALGVALDDITLLDVYRAVGEPPLFSDLVSEDTPECLVEQAVNAHLSAVLKDAEAALL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R
Sbjct: 121 ARFGEVTLGMLSRE 134
>gi|107103686|ref|ZP_01367604.1| hypothetical protein PaerPA_01004757 [Pseudomonas aeruginosa PACS2]
Length = 133
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A H + P I + + + + + + L G V + +G RGG RL +P
Sbjct: 2 LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
IT+LD+ +A S A ++ +C + + L A + L ++E
Sbjct: 61 ADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLLERLGSVTLE 120
Query: 129 CLVRN 133
L
Sbjct: 121 QLASE 125
>gi|322373240|ref|ZP_08047776.1| Rrf2 family protein [Streptococcus sp. C150]
gi|321278282|gb|EFX55351.1| Rrf2 family protein [Streptococcus sp. C150]
Length = 149
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 8/143 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + VL A++ D +A + ++ + + K L L KA ++ +V+
Sbjct: 1 MQIPSRFTIAVHVLTLIALNKDNETKLTSDFMAGSVGVNPVIIRKTLSQLKKADLI-SVQ 59
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCG--LTSVLRK 113
GG L + ++I +L V A + S + CP+ + L L
Sbjct: 60 RGTGGAALVKSPEEINLLQVYHAVDSIGPSGKLFSFHDHPNPACPVGRNIHGILDQSLED 119
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A L ++ ++++ +
Sbjct: 120 VQMAMEKELETKTLAGILKDAKA 142
>gi|291287446|ref|YP_003504262.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
gi|290884606|gb|ADD68306.1| transcriptional regulator, BadM/Rrf2 family [Denitrovibrio
acetiphilus DSM 12809]
Length = 141
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
DY IR+++Y A + I ++ +S + KI+ L G + T G+ GG+ +
Sbjct: 10 DYAIRIIIYLATE-GKMVKTKDICKSLYLSRPIVVKIINKLKSCGFLITKTGKEGGLTIA 68
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
++ D+++ + + +C HK C L+ C + + + + L Q I
Sbjct: 69 EKIYDASLYDILQCMGFNSRMNQCTT-HKATCKLMPICSVNVLFCEIQQDIENRLKQAKI 127
Query: 128 ECLVRNRSSIKKIFN 142
+ + +K+ N
Sbjct: 128 KEFLFENRD-RKLVN 141
>gi|260654665|ref|ZP_05860155.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
gi|260630681|gb|EEX48875.1| Rrf2 family protein [Jonquetella anthropi E3_33 E1]
Length = 133
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
P + IA+ +S+ +L +++ L +AG++ + RG GG L + +ITIL++V+A+
Sbjct: 14 PVSVMDIAQREELSDTYLEQLVSKLRRAGLLRSYRGANGGYELAKDPSEITILEIVQASG 73
Query: 84 ESFFVAECFASHKIDCP----LVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
E EC + K C C RK +A ++ ++E L+ S
Sbjct: 74 EKLEFPECAFNEK-GCELARQRGSVCPSAFFWRKLSSAVLELSRSMTLEDLLSQSSK 129
>gi|251795969|ref|YP_003010700.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2]
gi|247543595|gb|ACT00614.1| transcriptional regulator, TrmB [Paenibacillus sp. JDR-2]
Length = 133
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 4/133 (3%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L + +G++ L+ A + S+IAE L KIL LV+ GI+E +GR
Sbjct: 3 QLKRFG-FGVQALIVLASQTE-LLTSSEIAERIHCEPTALRKILSQLVEGGIIEVKQGRT 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG +L + + +T+ +V K E + + + ++ + +
Sbjct: 61 GGYQLAKRPELVTLREVYKTVHEEEPPWDRMLDTTGNHHFGKKVNESFKQIMADISDQVY 120
Query: 120 DVLTQYSIECLVR 132
VL Y+I L+
Sbjct: 121 FVLGNYTISDLLD 133
>gi|30263359|ref|NP_845736.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|47528737|ref|YP_020086.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49186205|ref|YP_029457.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|65320688|ref|ZP_00393647.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
str. A2012]
gi|165868327|ref|ZP_02212987.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167632500|ref|ZP_02390827.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|167637112|ref|ZP_02395392.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|170685042|ref|ZP_02876267.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|170704922|ref|ZP_02895387.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|177649964|ref|ZP_02932965.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190564684|ref|ZP_03017605.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|196035535|ref|ZP_03102939.1| rrf2 family protein [Bacillus cereus W]
gi|196038146|ref|ZP_03105456.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|206975367|ref|ZP_03236280.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|218904535|ref|YP_002452369.1| rrf2 family protein [Bacillus cereus AH820]
gi|222096863|ref|YP_002530920.1| rrf2 family protein [Bacillus cereus Q1]
gi|227813772|ref|YP_002813781.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229604113|ref|YP_002867615.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|254685971|ref|ZP_05149830.1| rrf2 family protein [Bacillus anthracis str. CNEVA-9066]
gi|254723374|ref|ZP_05185162.1| rrf2 family protein [Bacillus anthracis str. A1055]
gi|254738442|ref|ZP_05196145.1| rrf2 family protein [Bacillus anthracis str. Western North America
USA6153]
gi|254742392|ref|ZP_05200077.1| rrf2 family protein [Bacillus anthracis str. Kruger B]
gi|254752758|ref|ZP_05204794.1| rrf2 family protein [Bacillus anthracis str. Vollum]
gi|254761271|ref|ZP_05213295.1| rrf2 family protein [Bacillus anthracis str. Australia 94]
gi|301054901|ref|YP_003793112.1| putative Rrf2 family transcriptional regulator [Bacillus anthracis
CI]
gi|30257993|gb|AAP27222.1| rrf2 family protein [Bacillus anthracis str. Ames]
gi|47503885|gb|AAT32561.1| rrf2 family protein [Bacillus anthracis str. 'Ames Ancestor']
gi|49180132|gb|AAT55508.1| rrf2 family protein [Bacillus anthracis str. Sterne]
gi|164715053|gb|EDR20570.1| rrf2 family protein [Bacillus anthracis str. A0488]
gi|167514619|gb|EDR89985.1| rrf2 family protein [Bacillus anthracis str. A0193]
gi|167532798|gb|EDR95434.1| rrf2 family protein [Bacillus anthracis str. A0442]
gi|170129777|gb|EDS98639.1| rrf2 family protein [Bacillus anthracis str. A0389]
gi|170671302|gb|EDT22040.1| rrf2 family protein [Bacillus anthracis str. A0465]
gi|172083916|gb|EDT68975.1| rrf2 family protein [Bacillus anthracis str. A0174]
gi|190564001|gb|EDV17965.1| rrf2 family protein [Bacillus anthracis Tsiankovskii-I]
gi|195991836|gb|EDX55800.1| rrf2 family protein [Bacillus cereus W]
gi|196031416|gb|EDX70013.1| rrf2 family protein [Bacillus cereus NVH0597-99]
gi|206746269|gb|EDZ57663.1| rrf2 family protein [Bacillus cereus H3081.97]
gi|218539133|gb|ACK91531.1| rrf2 family protein [Bacillus cereus AH820]
gi|221240921|gb|ACM13631.1| rrf2 family protein [Bacillus cereus Q1]
gi|227005217|gb|ACP14960.1| rrf2 family protein [Bacillus anthracis str. CDC 684]
gi|229268521|gb|ACQ50158.1| rrf2 family protein [Bacillus anthracis str. A0248]
gi|300377070|gb|ADK05974.1| putative transcriptional regulator, Rrf2 family [Bacillus cereus
biovar anthracis str. CI]
Length = 137
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R D++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLDEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|21221109|ref|NP_626888.1| hypothetical protein SCO2652 [Streptomyces coelicolor A3(2)]
gi|6900951|emb|CAB71827.1| hypothetical protein SC8E4A.22 [Streptomyces coelicolor A3(2)]
Length = 144
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 52/138 (37%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + + QIA + + + + ++L L ++G+VE+
Sbjct: 1 MSANSRLTIAAHALAWIGLYQRQGHEVATSEQIAASANTNPVVIRRLLGELRRSGLVESR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RG G L R +T+LDV +A E A + C + + V
Sbjct: 61 RGVGAGWSLARELGSMTLLDVYEAVEPGPLFAMHRTTPDQGCVVGHGIQPAMRDVYEGIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
L + ++E ++RN
Sbjct: 121 ETVRHELARVTLEDVLRN 138
>gi|326406059|gb|ADZ63130.1| Putative HTH-type transcriptional regulator [Lactococcus lactis
subsp. lactis CV56]
Length = 156
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G
Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
+ GG L + I+ DV A E + + + + C +TS L +
Sbjct: 61 KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKAKRCAITSALDEIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
N L+ S+ +
Sbjct: 121 NTLVRTLSNVSLAQVADE 138
>gi|288905395|ref|YP_003430617.1| transcriptional regulator [Streptococcus gallolyticus UCN34]
gi|306831475|ref|ZP_07464633.1| transcriptional regulator superfamily protein [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325978384|ref|YP_004288100.1| transcriptional regulator [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288732121|emb|CBI13686.1| putative transcriptional regulator [Streptococcus gallolyticus
UCN34]
gi|304426260|gb|EFM29374.1| transcriptional regulator superfamily protein [Streptococcus
gallolyticus subsp. gallolyticus TX20005]
gi|325178312|emb|CBZ48356.1| transcriptional regulator [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 159
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K + + VL A+ ++ P + +++ +S+ +L KIL L +AG++++
Sbjct: 1 MKLNKSFEQAVYVLTMLALQENHTPVKSHVLSDILEVSDSYLKKILVKLTRAGLIQSNAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--- 116
+ GG +L + IT+ DV A + V E + V K
Sbjct: 61 KVGGYQLAQSVTTITLKDVFFALDLQANVIEFKHMAHHIYDDTSH--VKQVENKVQQTLE 118
Query: 117 ----AFFDVLTQYSIECLVRNR 134
AF+ L +I L++
Sbjct: 119 KGLFAFYHELDTLTIADLLQEE 140
>gi|15672540|ref|NP_266714.1| hypothetical protein L153086 [Lactococcus lactis subsp. lactis
Il1403]
gi|13432280|sp|Q48660|YFFB_LACLA RecName: Full=Putative HTH-type transcriptional regulator yffB
gi|12723445|gb|AAK04656.1|AE006290_1 hypothetical protein L153086 [Lactococcus lactis subsp. lactis
Il1403]
Length = 156
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G
Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
+ GG L + I+ DV A E + + + + C +TS L +
Sbjct: 61 KNGGFSLNKELHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKAKRCAITSALDEIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
N L+ S+ +
Sbjct: 121 NTLVRTLSNVSLAQVADE 138
>gi|206559473|ref|YP_002230234.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
gi|198035511|emb|CAR51390.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
Length = 151
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQSALTGYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
L ++ + + +++
Sbjct: 121 EASLATRTLADVTADMLDLEQ 141
>gi|118478673|ref|YP_895824.1| BadM/Rrf2 family transcriptional regulator [Bacillus thuringiensis
str. Al Hakam]
gi|118417898|gb|ABK86317.1| transcriptional regulator, BadM/Rrf2 family [Bacillus thuringiensis
str. Al Hakam]
Length = 137
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 53/132 (40%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R ++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLSEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|134295230|ref|YP_001118965.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
vietnamiensis G4]
gi|134138387|gb|ABO54130.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
vietnamiensis G4]
Length = 146
Score = 75.7 bits (185), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ + P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQDGVPLSSEIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R I++LDV +A +++ A + C + L + A A
Sbjct: 61 GGGALLAREPGDISLLDVYRAVDDAQLFALHREAPNPACMVGRHIQGVLIDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|153006117|ref|YP_001380442.1| BadM/Rrf2 family transcriptional regulator [Anaeromyxobacter sp.
Fw109-5]
gi|152029690|gb|ABS27458.1| transcriptional regulator, BadM/Rrf2 family [Anaeromyxobacter sp.
Fw109-5]
Length = 173
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ + + VLM+ A ++ P +AE + + + +++ + +AG V +GR GG
Sbjct: 5 TRLSRV-LHVLMHMA-RSNGPFTSEHMAEMLGTNPVVVRRMMGAVREAGYVRAEKGRGGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
+ T+ DV +A A C + + L +R A
Sbjct: 63 WTIACDLGTTTLRDVYQAVGSPTLFAIGSGGSNSSCAVERAVNGALRDAVRSAQELLLAR 122
Query: 122 LTQYSIECLVR 132
L Q ++ L
Sbjct: 123 LGQVTLADLAA 133
>gi|325124883|gb|ADY84213.1| Transcription regulator [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 142
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L Y I D IA + + + ++ L KAG ++T +G
Sbjct: 1 MKFSHKLSDAVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGFLKTKQGS 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
L + ++I++ D+ A + + CP+ G+ L + A
Sbjct: 61 AEP-ELAKKPEEISLYDIFAAVGMEHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119
Query: 119 FDVLTQYSIECLVRN 133
F + + S+ +V
Sbjct: 120 FAKMREISLREIVDQ 134
>gi|313109618|ref|ZP_07795565.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
gi|310882067|gb|EFQ40661.1| putative transcriptional regulator [Pseudomonas aeruginosa 39016]
Length = 142
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A H + P I + + + + + + L G V + +G R
Sbjct: 6 RLSRM----LHVLIHMARH-EGPATSEAIGQMLGTNPVVVRRTMALLKNEGYVSSEKGHR 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG RL +P IT+LD+ +A S A ++ +C + + L A
Sbjct: 61 GGWRLAKPLADITLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
L ++E L
Sbjct: 121 GRLGSVTLEQLASE 134
>gi|260662062|ref|ZP_05862958.1| transcription regulator [Lactobacillus fermentum 28-3-CHN]
gi|260553445|gb|EEX26337.1| transcription regulator [Lactobacillus fermentum 28-3-CHN]
Length = 149
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R I +L + ++ + ++ + IS + + +++ L +AG+V+T +G
Sbjct: 1 MRASTRFSDAIHILCFLQVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RL R +IT+ DV A EE + C + G L V ++A
Sbjct: 61 AQP-RLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPRCKVGGHIQPILAEVYQEAQ 119
Query: 116 NAFFDVLTQYSIECLVRN 133
A ++ +V
Sbjct: 120 AAAMIRFNNVTVADIVDQ 137
>gi|171322497|ref|ZP_02911294.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
gi|171092170|gb|EDT37571.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
Length = 151
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + L + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLIDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|313207165|ref|YP_004046342.1| transcriptional regulator, badm/rrf2 family [Riemerella
anatipestifer DSM 15868]
gi|312446481|gb|ADQ82836.1| transcriptional regulator, BadM/Rrf2 family [Riemerella
anatipestifer DSM 15868]
gi|315022434|gb|EFT35461.1| rrf2 family protein [Riemerella anatipestifer RA-YM]
gi|325335395|gb|ADZ11669.1| transcriptional regulator, BadM/Rrf2 family protein [Riemerella
anatipestifer RA-GD]
Length = 145
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 59/143 (41%), Gaps = 5/143 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR Y I + + +++ +A+ E F KIL L K IV +++G
Sbjct: 2 FSKACEYGIRACAYITIESMQNRKVKVADVAKKVGTPEAFTAKILSALTKHNIVNSIKGP 61
Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + A I I D+V A + ++ C C C L N
Sbjct: 62 YGGFEIGEQRAKSIKIKDIVIAIDGHSILSSCSLGF-SSCDESNPCPLHFKYVSVRNELC 120
Query: 120 DVLTQYSIECLVRN-RSSIKKIF 141
+L ++ + + ++ K+
Sbjct: 121 KMLDTTTLFEMAIDVKNKKSKLL 143
>gi|218672764|ref|ZP_03522433.1| putative transcriptional regulator protein [Rhizobium etli GR56]
Length = 166
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I + + + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL +P ++I++LD++ A E C + D C +++ + +
Sbjct: 61 PRGGYRLAKPPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCTISAAMLR 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + SI L
Sbjct: 121 AERIYRAELAKTSIADL 137
>gi|171778450|ref|ZP_02919608.1| hypothetical protein STRINF_00459 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|171282851|gb|EDT48275.1| hypothetical protein STRINF_00459 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
Length = 149
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 12/142 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + R + +L A + N+ +A + ++ + + K L L KA ++ R
Sbjct: 1 MQIPSRFTIAVHILTLIAQNKGNETKLTSDLMASSVGVNPVIIRKTLSQLKKADLIFVQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR--- 112
G GG L ++I +L V +A + S + + CP+ + + +L
Sbjct: 61 G-SGGATLAMAPEEINLLQVYRAVDSIGPSGQLFSFHDNPNPACPVGRN--IHGILDQSL 117
Query: 113 -KALNAFFDVLTQYSIECLVRN 133
A L + ++ ++++
Sbjct: 118 GDVQMAMEKELEKKTLAGILKD 139
>gi|239813117|ref|YP_002942027.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
S110]
gi|239799694|gb|ACS16761.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
S110]
Length = 153
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A + P +A A + + +++ L +AG V + +G GG L P
Sbjct: 11 LHALLHMA-EMEGPVTSESLAMAMQTHPVVVRRVMAGLREAGFVSSAKGHGGGWVLSCPL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
D +T+ D+ +A +A + C + + L R+A + ++
Sbjct: 70 DAVTLGDIHQAVGSPALLAMGNRTESPGCIVEQAVNAALDGACREAEALLLERFNSITLA 129
Query: 129 CLVRN 133
L R+
Sbjct: 130 DLSRD 134
>gi|313669379|ref|YP_004049806.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
DSM 16994]
gi|313156576|gb|ADR35253.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
DSM 16994]
Length = 137
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 1/113 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH +K +Y IRVL Y H++ + ++ + + + +L K++ LVK G+V RGR
Sbjct: 1 MHFSKTAEYAIRVLSYLYRHHESSHSVNVLHQELVLPYKYLTKMVTDLVKKGLVNASRGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
GG+ L + ADQI + D+++A E C + C C L +
Sbjct: 61 EGGISLAKNADQIRLRDILEAIGEPLEHERCILGFEK-CDASNPCALHEQWVQ 112
>gi|115351142|ref|YP_772981.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|115281130|gb|ABI86647.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
AMMD]
Length = 151
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + L + A A
Sbjct: 61 GGGALLAREPGKITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLIDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|281491024|ref|YP_003353004.1| Rrf2 family transcriptional regulator [Lactococcus lactis subsp.
lactis KF147]
gi|281374782|gb|ADA64302.1| Transcriptional regulator, Rrf2 family [Lactococcus lactis subsp.
lactis KF147]
Length = 156
Score = 75.3 bits (184), Expect = 2e-12, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G
Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
+ GG L + I+ DV A E + + + + C +TS L +
Sbjct: 61 KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGSESGKATRCAITSALDEIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
N L+ S+ +
Sbjct: 121 NTLVRTLSNVSLAQVADE 138
>gi|186685463|ref|YP_001868659.1| BadM/Rrf2 family transcriptional regulator [Nostoc punctiforme PCC
73102]
gi|186467915|gb|ACC83716.1| transcriptional regulator, BadM/Rrf2 family [Nostoc punctiforme PCC
73102]
Length = 156
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + +Y + L+ A H+ P +S+I I E +L +IL L +AG+V++ RG
Sbjct: 16 LSSKVEYALLALLELASHHGKKLPLTMSEITTKQPIPERYLEQILTNLRRAGVVQSQRGS 75
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L R QIT+L++V E + P + + V +A A +
Sbjct: 76 KGGFVLAREPWQITLLEIVTLVEGERK-----EKDTSNSPTLEKTLVYEVWEQANAAAIE 130
Query: 121 VLTQYSIECLVRNRS 135
VL +Y+++ L R
Sbjct: 131 VLGRYTLQDLCEERE 145
>gi|325686154|gb|EGD28205.1| transcriptional regulator [Lactobacillus delbrueckii subsp. lactis
DSM 20072]
Length = 152
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ + IA + S + + +++ L AG ++T G
Sbjct: 1 MKVSTRFSDSIHLLTFLVIYKGKTTLSSNIIASSLNTSPVVVRRLMSNLRDAGFIKTTHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
L R I++L++ ATE + DC + G+ LT A A
Sbjct: 61 SPDP-ELLREPKDISLLEIYLATEGKSPLFTIDHETNPDCIVGGNIQPTLTDYFSHAEIA 119
Query: 118 FFDVLTQYSIECLVR 132
VL + S++ ++
Sbjct: 120 AEAVLGKISLQDVID 134
>gi|291523912|emb|CBK89499.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
DSM 17629]
gi|291528627|emb|CBK94213.1| transcriptional regulator, BadM/Rrf2 family [Eubacterium rectale
M104/1]
Length = 141
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 9/136 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R I + +D +A + + + + KILQ L AG++E RG
Sbjct: 1 MQISSRFTMAIHMFACIDTFSDQKMTSDFMAASIGTNPVIIRKILQQLKAAGLIEVARG- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
GGV + RP +QIT LDV KA E + + CP+ + + VL +
Sbjct: 60 TGGVTITRPLEQITFLDVYKAVECAPDEQLFHFHENPNQKCPVGKN--IHHVLDKRLLEV 117
Query: 115 LNAFFDVLTQYSIECL 130
A + L++ ++ +
Sbjct: 118 QRAMEEKLSEMTLADV 133
>gi|323488201|ref|ZP_08093452.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2]
gi|323398205|gb|EGA91000.1| transcription regulator (putative) [Planococcus donghaensis MPA1U2]
Length = 168
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 6/139 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK + I +++ A + P +I++ +S ++ KI + LV GI +V G
Sbjct: 1 MQLTKGVEQAICIIVLLATQESSAPLASDEISKRLGVSPSYMKKITRKLVVQGIAVSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-----CFASHKIDCPLVGSCGLTSVLRKA 114
GGV L + A IT+LDV++A E + A + G L +V +
Sbjct: 61 NNGGVSLAKSATDITMLDVIEAMEGPIKIYPDTGLIRLAFKDGEYAKKGQEILQNVFAQG 120
Query: 115 LNAFFDVLTQYSIECLVRN 133
+ L++ + L++
Sbjct: 121 DRLLIEYLSKVTAADLLKE 139
>gi|254476371|ref|ZP_05089757.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
gi|214030614|gb|EEB71449.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
Length = 134
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L + A D S IA+ + + + ++L L +AG++ + +G
Sbjct: 1 MKRNSRLSLALHTLSHMAGEPDRVRTSSDIADHAGTNPVVVRRVLGRLREAGLLTSEKGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG RL R I+ DV A +E ++ + C + + ++ VL +
Sbjct: 61 AGGWRLARSPQDISFADVYLALDERLVASDEISEA-PACSVEHALQKRVSGVLEEIEQTL 119
Query: 119 FDVLTQYSIECL 130
L + SI +
Sbjct: 120 IQKLGEASISEV 131
>gi|327460982|gb|EGF07315.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK1057]
Length = 170
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 79
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 80 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157
>gi|225861464|ref|YP_002742973.1| Rrf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
gi|298229231|ref|ZP_06962912.1| Rrf2 family protein [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298254514|ref|ZP_06978100.1| Rrf2 family protein [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298503378|ref|YP_003725318.1| Rrf2 family transcriptional regulator [Streptococcus pneumoniae
TCH8431/19A]
gi|225727494|gb|ACO23345.1| Rrf2 family protein [Streptococcus pneumoniae Taiwan19F-14]
gi|298238973|gb|ADI70104.1| Rrf2 family transcriptional regulator [Streptococcus pneumoniae
TCH8431/19A]
gi|327389821|gb|EGE88166.1| RRF2 family protein [Streptococcus pneumoniae GA04375]
Length = 145
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + KIL L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ L Q S+E +V + S
Sbjct: 118 RIQLTMEAELGQISLEKVVADAES 141
>gi|317470881|ref|ZP_07930261.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
gi|316901625|gb|EFV23559.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
Length = 145
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 66/140 (47%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + + +L+ A P + ++E +S+ +L KI++ LV AG+V++ G
Sbjct: 1 MKIKGSLEQAVCILLVIAHTRGHAPVKSYTLSERLGLSDSYLKKIMRQLVVAGLVDSEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE------ESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
++GG L R I++LDV +A E + + + + + SV +
Sbjct: 61 KKGGFVLKRAPKNISLLDVFEAIESTAPFLSTTNLVDKVFPKEKMIAHEKEQQIISVFTR 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A+ L+Q++++ +V
Sbjct: 121 AEQAYRQSLSQFTLDHVVAE 140
>gi|294650114|ref|ZP_06727497.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
ATCC 19194]
gi|292824021|gb|EFF82841.1| Rrf2 family transcriptional regulator [Acinetobacter haemolyticus
ATCC 19194]
Length = 139
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + +IA + + + + + L AG++++V+G +GG L
Sbjct: 2 LHVLLHMARQ-NKIFTSEEIAHMLSTNAVVVRRTMAGLKNAGLIQSVKGPKGGWHLIADL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
++ T+LD+ A E A +C + + L +++A + L ++
Sbjct: 61 EKTTLLDIYNAVGEPTIFAIGNERENPECGVERVVNAALEDAMQQAQDILLAKLKATTLA 120
Query: 129 CLV 131
L
Sbjct: 121 DLA 123
>gi|324991473|gb|EGC23406.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK353]
Length = 164
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 15 MQISSRFTIATHMLIVLALEGKKQKLTSDILASSVGVNPVIIRKTLSQLKNAGMI-TVAR 73
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 74 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 131
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 132 AIQAAMEAELAQTSLDEVVA 151
>gi|325690774|gb|EGD32775.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK115]
gi|332358975|gb|EGJ36796.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK49]
Length = 169
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 79
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 80 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157
>gi|218898464|ref|YP_002446875.1| rrf2 family protein [Bacillus cereus G9842]
gi|218543993|gb|ACK96387.1| rrf2 family protein [Bacillus cereus G9842]
Length = 137
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R
Sbjct: 8 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 67
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
++ + + + T E +C C + + L ++ A + L Y++
Sbjct: 68 LGEVNLWHIYQITSEGALQPKC-PESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTM 126
Query: 128 ECLVR 132
+ +V
Sbjct: 127 KEVVD 131
>gi|311070181|ref|YP_003975104.1| hypothetical protein BATR1942_16270 [Bacillus atrophaeus 1942]
gi|310870698|gb|ADP34173.1| hypothetical protein BATR1942_16270 [Bacillus atrophaeus 1942]
Length = 134
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L ++ D IA++ + + + +++ L KA I+ + G
Sbjct: 2 INSRLAVAIHILSIISV--DEKASSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVP- 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFD 120
G L + I++L+V +A ++ + + CP+ C L A D
Sbjct: 59 GASLKKDPADISLLEVYRAVQKQEELFAVHDNPNPKCPVGKRIQCALDETFESVQKAMED 118
Query: 121 VLTQYSIECLVRN 133
L S+ ++ +
Sbjct: 119 ELASKSLNDVMNH 131
>gi|284048055|ref|YP_003398394.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
fermentans DSM 20731]
gi|283952276|gb|ADB47079.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
fermentans DSM 20731]
Length = 144
Score = 75.3 bits (184), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 58/139 (41%), Gaps = 9/139 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I +L + D+ +A + + + + ++ L KAG++ +VR
Sbjct: 1 MQVSTKFTIAIHILAAASYFGKDHKVTSEFLAGSIGCNPVIVRNLMMDLKKAGLI-SVRR 59
Query: 60 RRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSCGLTSVLR----KA 114
GGV + RP DQIT DV A E + + CP+ + + L
Sbjct: 60 GPGGVEVTRPLDQITFRDVYDAVETRKDRLFNFHENPNPLCPVGRN--IHQALDGKLLDI 117
Query: 115 LNAFFDVLTQYSIECLVRN 133
F + L +++ +V +
Sbjct: 118 QKQFQEDLRGHTLAEVVGD 136
>gi|324327310|gb|ADY22570.1| rrf2 family protein [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 137
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R ++ + + + T E +C C + + L ++ A
Sbjct: 61 GFIFARDLSEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGK 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|220911591|ref|YP_002486900.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Arthrobacter chlorophenolicus A6]
gi|219858469|gb|ACL38811.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter
chlorophenolicus A6]
Length = 161
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + D +R LM A IA++ + K + L G+++ RG
Sbjct: 1 MKINAFADVSLRALMVLAAAPGNQLLTTQNIADSVGTPYNHVSKAMARLRTMGLIDVERG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
R GG RL T+ +++ + A+C A +CPL+ C L + L +A AF+
Sbjct: 61 RTGGSRLSSAGRTATVGQILRELDTRTDPADCMA-ATGNCPLINECKLRAALARAREAFY 119
Query: 120 DVLTQYSIECL 130
L I L
Sbjct: 120 RELDPVVIANL 130
>gi|262366531|gb|ACY63088.1| hypothetical protein YPD8_2413 [Yersinia pestis D182038]
Length = 149
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
VK G+V +VRG GG L + A I + V+ A +ES C K C
Sbjct: 31 FHAYVKNGLVASVRGPGGGYLLGKDASAIAVGAVITAVDESVDATRC--QGKEGCQGGNR 88
Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
C ++ R L ++ LV N+ ++
Sbjct: 89 CLTHTLWRDLSERISSFLNNITLAELVNNQDILE 122
>gi|255597053|ref|XP_002536683.1| conserved hypothetical protein [Ricinus communis]
gi|223518885|gb|EEF25699.1| conserved hypothetical protein [Ricinus communis]
Length = 149
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 45/125 (36%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A D P +A+ + + + + + L + GIV + +G GG +
Sbjct: 11 LHALLHMAEQ-DGPLTSETLAQCMHTNPVVVRRTMGLLREVGIVNSTKGHTGGWTIAADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
+T+ + +A E A + +C + S L +A ++
Sbjct: 70 KTVTLRQLHEALGEPAVFAIGNRNETPECLVEQSVNSVLDDAFAEAEALLLQRFENVTLA 129
Query: 129 CLVRN 133
L
Sbjct: 130 DLAAE 134
>gi|325677675|ref|ZP_08157327.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
gi|324110643|gb|EGC04807.1| transcriptional regulator, Rrf2 family [Ruminococcus albus 8]
Length = 145
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T DY +R+ D +++ C++ F KIL+ LV AG+V++ +G
Sbjct: 1 MYITLEADYAVRITAEL-CKADGRLDAKTLSDKTCVTLRFSLKILRKLVSAGLVKSFKGT 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAF 118
+GG + + IT+ V++A E ++ + C DC G+C
Sbjct: 60 QGGYMIAKSPKDITLRMVIEAIEGTYCFSRCLQPD-ADCSRGASGNCPFQDAFCDITKMV 118
Query: 119 FDVLTQYSIECL 130
+ L Y+ L
Sbjct: 119 SEKLETYNFAQL 130
>gi|307709575|ref|ZP_07646029.1| transcriptional regulator family protein [Streptococcus mitis
SK564]
gi|307619706|gb|EFN98828.1| transcriptional regulator family protein [Streptococcus mitis
SK564]
Length = 145
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + K L L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKTLSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHEVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ A L Q S+E +V + S
Sbjct: 118 RIQLAMETELGQTSLEQVVADAES 141
>gi|78223304|ref|YP_385051.1| BadM/Rrf2 family transcriptional regulator [Geobacter
metallireducens GS-15]
gi|78194559|gb|ABB32326.1| transcriptional regulator, BadM/Rrf2 family [Geobacter
metallireducens GS-15]
Length = 143
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 2/140 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K + + + ++ A + +IA +S L KI++ LV G+V+ VRG
Sbjct: 1 MRLNKASLFALFAVLELASDPERQLSTGEIASKYGVSPHHLAKIMRDLVHEGLVQAVRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R + T+LD+++ E + +D P++ L S+ + +
Sbjct: 61 GGGYRFSGNIQRTTLLDIIQMFENLESELDVPHGSPLDVPILEE--LKSIANEIDDLTKA 118
Query: 121 VLTQYSIECLVRNRSSIKKI 140
VL ++E ++ +I
Sbjct: 119 VLDTITLETALKGARQRVEI 138
>gi|310641709|ref|YP_003946467.1| rrf2 family transcriptional regulator protein [Paenibacillus
polymyxa SC2]
gi|309246659|gb|ADO56226.1| Rrf2 family transcriptional regulator protein [Paenibacillus
polymyxa SC2]
Length = 144
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L+ A S IA + + + + +I+ L +AG+V++ G R
Sbjct: 1 MSTHFSVSIHCLLLLAEGAPERMTSSLIASSINTNPVVVRRIMSRLKQAGLVDSSPGAR- 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
G RL + I + + +AT++ + +C + + L + A
Sbjct: 60 GFRLSMSSSNINLKMIYEATKDEGPLFAIHTDSNHNCEVGRNIDALLDGLYTVAEQKIQA 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
++ L ++K+
Sbjct: 120 FFETVTLRDL---EQALKQ 135
>gi|331092200|ref|ZP_08341030.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330401972|gb|EGG81546.1| hypothetical protein HMPREF9477_01673 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 133
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK DY IR++ A+ + +S I +S +KI + L KAG+++++RG
Sbjct: 1 MLFTKECDYAIRIMR--ALSSGEFINVSTICTMENLSSAMTYKITRKLEKAGLLKSLRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG L R I++ DV + E + EC + C + +
Sbjct: 59 NGGYALNRSLKDISLYDVCTSIEPDILLLECMKKDYQCSMNTQNTPCLVHGEFCRIQRIL 118
Query: 119 FDVLTQYSIECL 130
L ++ L
Sbjct: 119 LQELQHKNLAEL 130
>gi|148994892|ref|ZP_01823913.1| Rrf2 family protein [Streptococcus pneumoniae SP9-BS68]
gi|168488651|ref|ZP_02712850.1| Rrf2 family protein [Streptococcus pneumoniae SP195]
gi|147926960|gb|EDK78005.1| Rrf2 family protein [Streptococcus pneumoniae SP9-BS68]
gi|183572805|gb|EDT93333.1| Rrf2 family protein [Streptococcus pneumoniae SP195]
gi|332072468|gb|EGI82951.1| RRF2 family protein [Streptococcus pneumoniae GA17570]
Length = 145
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + IL L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRNILSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ L Q S+E +V + S
Sbjct: 118 RIQLTMEAELGQTSLEKVVADAES 141
>gi|325685122|gb|EGD27251.1| Rrf2 family transcriptional regulator [Lactobacillus delbrueckii
subsp. lactis DSM 20072]
Length = 142
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L Y I D IA + + + ++ L KAG+++T +G
Sbjct: 1 MKFSHKLSDAVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGLLKTKQGN 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
L + ++I++ D+ A + + CP+ G+ L + A
Sbjct: 61 AEP-ELAKKPEEISLYDIFAAVGMDHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAA 119
Query: 119 FDVLTQYSIECLVRN 133
F + + S+ +V
Sbjct: 120 FAKMREISLREIVDQ 134
>gi|323341640|ref|ZP_08081873.1| iron-sulfur cluster assembly transcription regulator IscR
[Erysipelothrix rhusiopathiae ATCC 19414]
gi|322464065|gb|EFY09258.1| iron-sulfur cluster assembly transcription regulator IscR
[Erysipelothrix rhusiopathiae ATCC 19414]
Length = 141
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 8/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ RT YGI + Y I++ + IAE IS+++L ++ L +A +V+ V+G
Sbjct: 1 MKLSARTRYGIAAMTYMHINDQELTTLVNIAEHLNISKIYLEQVFSSLKQANLVDAVKGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + + + +++ A E S + E + D + + + A +
Sbjct: 61 AGGYYL--KSKECNMFNILNALEPS--LFEKTPASTDDSIINAALCTH-LYTPIDAALRE 115
Query: 121 VLTQYSI---ECLVRNRS 135
L + L++N S
Sbjct: 116 TLKGIKLKEIAELIKNES 133
>gi|257877644|ref|ZP_05657297.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
gi|257811810|gb|EEV40630.1| conserved hypothetical protein [Enterococcus casseliflavus EC20]
Length = 156
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 58/135 (42%), Gaps = 7/135 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + I +L Y + +IA++ + ++ +I+ L AG++E+ RG+
Sbjct: 17 KYSTKYSDAIHILAYIHLFKGTDLSSDRIAQSVETNPAYVRRIMSDLRIAGLIESQRGKP 76
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNA 117
+L + ++I++LD+ + E+ + +C + G+ VL +
Sbjct: 77 NP-KLTKEPNEISLLDIYASVEKDQHLLHADKKTNPNCLIGGNIQT--VLEETYDVLQKK 133
Query: 118 FFDVLTQYSIECLVR 132
++ S++ ++
Sbjct: 134 IEQEMSAISLQSIID 148
>gi|300697092|ref|YP_003747753.1| Rrf2 family transcriptional regulator [Ralstonia solanacearum
CFBP2957]
gi|299073816|emb|CBJ53337.1| putative transcriptional regulator, Rrf2 [Ralstonia solanacearum
CFBP2957]
Length = 143
Score = 75.0 bits (183), Expect = 3e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L AG V + G
Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD+IT+LDV + E +A + C + L V +A +A
Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119
Query: 119 FDVLTQYSIECLVRN 133
L +I ++
Sbjct: 120 EAELAAQTIAGMLAE 134
>gi|322385029|ref|ZP_08058679.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC
51100]
gi|321270939|gb|EFX53849.1| Rrf2 family transcriptional regulator [Streptococcus cristatus ATCC
51100]
Length = 149
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEITKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|315497324|ref|YP_004086128.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
excentricus CB 48]
gi|315415336|gb|ADU11977.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
excentricus CB 48]
Length = 163
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A D ++A+ + + + +++ L G+V++ +G GG RL RP
Sbjct: 11 LHVLLHLA-DTDKAVTSERLAQMMSTNPVVIRRVMAGLRAQGLVQSEKGHGGGWRLGRPL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
++T+ +V +A E A + +C + + + + L +A + ++
Sbjct: 70 KEVTLAEVYRAVGEPELFAMGNRTENPECLVEQAVNAAIDNALSEAEALLMQRFGEVTLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 MLAAD 134
>gi|89894263|ref|YP_517750.1| hypothetical protein DSY1517 [Desulfitobacterium hafniense Y51]
gi|219668676|ref|YP_002459111.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Desulfitobacterium hafniense DCB-2]
gi|89333711|dbj|BAE83306.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219538936|gb|ACL20675.1| transcriptional regulator, BadM/Rrf2 family [Desulfitobacterium
hafniense DCB-2]
Length = 151
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ R +++L+ A D +A + + + + +I+ L KAG++ +
Sbjct: 1 MQLSSRFPVAVQILIIIAWCPEDVKVTSEALAVSVNTNPVLIRRIMGYLKKAGLI-AISS 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG +L R ++IT+L V +A E + + A CP+ L L +A
Sbjct: 60 GTGGAKLTRSTEEITLLAVYRAVELTDQHALFGLHAHPNAYCPIGCRINDVLRPPLEEAR 119
Query: 116 NAFFDVLTQYSIECLV 131
NA L + +I+ L+
Sbjct: 120 NALEGSLAKVTIQELL 135
>gi|184155425|ref|YP_001843765.1| transcription regulator [Lactobacillus fermentum IFO 3956]
gi|183226769|dbj|BAG27285.1| transcription regulator [Lactobacillus fermentum IFO 3956]
Length = 149
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R GI +L + ++ + ++ + IS + + +++ L +AG+V+T +G
Sbjct: 1 MRASTRFSDGIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RL R +IT+ DV A EE + C + G L V ++A
Sbjct: 61 AQP-RLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPQCKVGGHIQPILAEVYQEAQ 119
Query: 116 NAFFDVLTQYSIECLVRN 133
A ++ +V
Sbjct: 120 AAAMIRFNNVTVADIVDQ 137
>gi|15901472|ref|NP_346076.1| Rrf2 family protein [Streptococcus pneumoniae TIGR4]
gi|15903520|ref|NP_359070.1| Rrf2 family protein [Streptococcus pneumoniae R6]
gi|111657543|ref|ZP_01408284.1| hypothetical protein SpneT_02001265 [Streptococcus pneumoniae
TIGR4]
gi|116515825|ref|YP_816905.1| Rrf2 family protein [Streptococcus pneumoniae D39]
gi|148984068|ref|ZP_01817363.1| Rrf2 family protein [Streptococcus pneumoniae SP3-BS71]
gi|148988679|ref|ZP_01820112.1| Rrf2 family protein [Streptococcus pneumoniae SP6-BS73]
gi|148997684|ref|ZP_01825248.1| Rrf2 family protein [Streptococcus pneumoniae SP11-BS70]
gi|149001909|ref|ZP_01826863.1| Rrf2 family protein [Streptococcus pneumoniae SP14-BS69]
gi|149006703|ref|ZP_01830389.1| Rrf2 family protein [Streptococcus pneumoniae SP18-BS74]
gi|149011509|ref|ZP_01832756.1| Rrf2 family protein [Streptococcus pneumoniae SP19-BS75]
gi|149021274|ref|ZP_01835520.1| Rrf2 family protein [Streptococcus pneumoniae SP23-BS72]
gi|168483494|ref|ZP_02708446.1| Rrf2 family protein [Streptococcus pneumoniae CDC1873-00]
gi|168487275|ref|ZP_02711783.1| Rrf2 family protein [Streptococcus pneumoniae CDC1087-00]
gi|168491484|ref|ZP_02715627.1| Rrf2 family protein [Streptococcus pneumoniae CDC0288-04]
gi|168493534|ref|ZP_02717677.1| Rrf2 family protein [Streptococcus pneumoniae CDC3059-06]
gi|168575177|ref|ZP_02721140.1| Rrf2 family protein [Streptococcus pneumoniae MLV-016]
gi|169832589|ref|YP_001695027.1| Rrf2 family protein [Streptococcus pneumoniae Hungary19A-6]
gi|182684580|ref|YP_001836327.1| rrf2 family protein [Streptococcus pneumoniae CGSP14]
gi|194396960|ref|YP_002038252.1| RRF2 family protein [Streptococcus pneumoniae G54]
gi|221232378|ref|YP_002511531.1| transcriptional regulator protein [Streptococcus pneumoniae ATCC
700669]
gi|225857253|ref|YP_002738764.1| Rrf2 family protein [Streptococcus pneumoniae P1031]
gi|225859392|ref|YP_002740902.1| Rrf2 family protein [Streptococcus pneumoniae 70585]
gi|237649186|ref|ZP_04523438.1| Rrf2 family protein [Streptococcus pneumoniae CCRI 1974]
gi|237822263|ref|ZP_04598108.1| Rrf2 family protein [Streptococcus pneumoniae CCRI 1974M2]
gi|303253989|ref|ZP_07340109.1| putative transcriptional regulator protein [Streptococcus
pneumoniae BS455]
gi|303258562|ref|ZP_07344542.1| rrf2 family protein [Streptococcus pneumoniae SP-BS293]
gi|303262652|ref|ZP_07348592.1| rrf2 family protein [Streptococcus pneumoniae SP14-BS292]
gi|303263591|ref|ZP_07349513.1| rrf2 family protein [Streptococcus pneumoniae BS397]
gi|303266965|ref|ZP_07352840.1| rrf2 family protein [Streptococcus pneumoniae BS457]
gi|303269871|ref|ZP_07355615.1| rrf2 family protein [Streptococcus pneumoniae BS458]
gi|307068264|ref|YP_003877230.1| putative transcriptional regulator [Streptococcus pneumoniae AP200]
gi|307127846|ref|YP_003879877.1| RRF2 family protein [Streptococcus pneumoniae 670-6B]
gi|14973126|gb|AAK75716.1| Rrf2 family protein [Streptococcus pneumoniae TIGR4]
gi|15459135|gb|AAL00281.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076401|gb|ABJ54121.1| Rrf2 family protein [Streptococcus pneumoniae D39]
gi|147756183|gb|EDK63225.1| Rrf2 family protein [Streptococcus pneumoniae SP11-BS70]
gi|147759718|gb|EDK66708.1| Rrf2 family protein [Streptococcus pneumoniae SP14-BS69]
gi|147761618|gb|EDK68582.1| Rrf2 family protein [Streptococcus pneumoniae SP18-BS74]
gi|147764499|gb|EDK71430.1| Rrf2 family protein [Streptococcus pneumoniae SP19-BS75]
gi|147923357|gb|EDK74470.1| Rrf2 family protein [Streptococcus pneumoniae SP3-BS71]
gi|147925880|gb|EDK76955.1| Rrf2 family protein [Streptococcus pneumoniae SP6-BS73]
gi|147930375|gb|EDK81359.1| Rrf2 family protein [Streptococcus pneumoniae SP23-BS72]
gi|168995091|gb|ACA35703.1| Rrf2 family protein [Streptococcus pneumoniae Hungary19A-6]
gi|172043161|gb|EDT51207.1| Rrf2 family protein [Streptococcus pneumoniae CDC1873-00]
gi|182629914|gb|ACB90862.1| rrf2 family protein [Streptococcus pneumoniae CGSP14]
gi|183569828|gb|EDT90356.1| Rrf2 family protein [Streptococcus pneumoniae CDC1087-00]
gi|183574285|gb|EDT94813.1| Rrf2 family protein [Streptococcus pneumoniae CDC0288-04]
gi|183576253|gb|EDT96781.1| Rrf2 family protein [Streptococcus pneumoniae CDC3059-06]
gi|183578739|gb|EDT99267.1| Rrf2 family protein [Streptococcus pneumoniae MLV-016]
gi|194356627|gb|ACF55075.1| RRF2 family protein [Streptococcus pneumoniae G54]
gi|220674839|emb|CAR69413.1| putative transcriptional regulator protein [Streptococcus
pneumoniae ATCC 700669]
gi|225722037|gb|ACO17891.1| Rrf2 family protein [Streptococcus pneumoniae 70585]
gi|225725981|gb|ACO21833.1| Rrf2 family protein [Streptococcus pneumoniae P1031]
gi|301800456|emb|CBW33090.1| putative transcriptional regulator protein [Streptococcus
pneumoniae OXC141]
gi|301802339|emb|CBW35093.1| putative transcriptional regulator protein [Streptococcus
pneumoniae INV200]
gi|302599077|gb|EFL66103.1| putative transcriptional regulator protein [Streptococcus
pneumoniae BS455]
gi|302636208|gb|EFL66703.1| rrf2 family protein [Streptococcus pneumoniae SP14-BS292]
gi|302640063|gb|EFL70518.1| rrf2 family protein [Streptococcus pneumoniae SP-BS293]
gi|302640606|gb|EFL71009.1| rrf2 family protein [Streptococcus pneumoniae BS458]
gi|302643482|gb|EFL73754.1| rrf2 family protein [Streptococcus pneumoniae BS457]
gi|302646629|gb|EFL76854.1| rrf2 family protein [Streptococcus pneumoniae BS397]
gi|306409801|gb|ADM85228.1| Predicted transcriptional regulator [Streptococcus pneumoniae
AP200]
gi|306484908|gb|ADM91777.1| RRF2 family protein [Streptococcus pneumoniae 670-6B]
gi|332072803|gb|EGI83284.1| RRF2 family protein [Streptococcus pneumoniae GA17545]
gi|332073970|gb|EGI84448.1| RRF2 family protein [Streptococcus pneumoniae GA41301]
gi|332199666|gb|EGJ13741.1| RRF2 family protein [Streptococcus pneumoniae GA41317]
gi|332200197|gb|EGJ14270.1| RRF2 family protein [Streptococcus pneumoniae GA47368]
gi|332201063|gb|EGJ15134.1| RRF2 family protein [Streptococcus pneumoniae GA47901]
Length = 145
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 60/144 (41%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ + +A + ++ + + KIL L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKESKVTSDFLAASVGVNPVIIRKILSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTEIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ L Q S+E +V + S
Sbjct: 118 RIQLTMEAELGQTSLEKVVADAES 141
>gi|304385691|ref|ZP_07368035.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM
20284]
gi|304328195|gb|EFL95417.1| Rrf2 family transcriptional regulator [Pediococcus acidilactici DSM
20284]
Length = 160
Score = 75.0 bits (183), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R I VL Y A +H+ P IA + + + +I+ L KAG+++T G
Sbjct: 3 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 62
Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
+ L R +QI++LD+ + +E + + DC + G+ L +
Sbjct: 63 KPQPA-LTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGNIQDALNAQYAHFQK 121
Query: 117 AFFDVLTQYSIECLVRN 133
D + + ++ ++++
Sbjct: 122 VVQDEMAKTTLADVIQD 138
>gi|325694827|gb|EGD36732.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK150]
Length = 160
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 69
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 70 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 128 AIQAAMEAELAQTSLDEVVA 147
>gi|58039649|ref|YP_191613.1| hypothetical protein GOX1196 [Gluconobacter oxydans 621H]
gi|58002063|gb|AAW60957.1| Hypothetical protein GOX1196 [Gluconobacter oxydans 621H]
Length = 148
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 8/129 (6%)
Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
I +++ A H + IA + + +LQ L +AG++ +VRG +GG RL
Sbjct: 11 AISIMLDVAFHAGRSGVVSGADIARRGDMLRRGIEPVLQALSRAGLLSSVRGPKGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
RP IT+ ++V+ E + L+ + L + + + + ++
Sbjct: 71 RPPRTITLNEIVRTVTEDPEM------PGDGVNLLRTKVLEPFWQSVDHEVSEKMASVTL 124
Query: 128 ECLVRNRSS 136
E L++N
Sbjct: 125 EHLLQNAEE 133
>gi|75760212|ref|ZP_00740268.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74492298|gb|EAO55458.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 149
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I L Y A+ D + + I+E+ + + + K+L L K +++ G GG R
Sbjct: 20 AIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARD 79
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
++ + + + T E +C C + + L ++ A + L Y++
Sbjct: 80 LGEVNLWHIYQITSEGALQPKC-PESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTM 138
Query: 128 ECLVR 132
+ +V
Sbjct: 139 KEVVD 143
>gi|327470615|gb|EGF16071.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK330]
Length = 149
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIVKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|253581432|ref|ZP_04858657.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
gi|251836502|gb|EES65037.1| conserved hypothetical protein [Fusobacterium varium ATCC 27725]
Length = 140
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 2/131 (1%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ +DY I++++Y + + +I+EA +S F KIL+ L K +VE+ RG
Sbjct: 5 MKITQESDYAIKIVLYLSKLDKGEIANAREISEAEKMSMKFALKILRRLCKVKLVESFRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG +L + AD I++ V++ + F+ + + + S+L
Sbjct: 65 IKGGYKLKKSADDISLRSVIEVIQGDLFINTSLKNINSAKKVETD-PVNSLLYSIQEDVK 123
Query: 120 DVLTQYSIECL 130
L+ S + L
Sbjct: 124 RKLSNTSFKDL 134
>gi|225374493|ref|ZP_03751714.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM
16841]
gi|225213731|gb|EEG96085.1| hypothetical protein ROSEINA2194_00108 [Roseburia inulinivorans DSM
16841]
Length = 139
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 62/131 (47%), Gaps = 7/131 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ TDY +R+L A+ + + + + I E + + F +KI+ L K G+V++VRG
Sbjct: 1 MIITRETDYALRILR--ALSDGHRHTMKNICEEAVVPQQFAYKIIAKLAKGGVVDSVRGS 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG----LTSVLRKALN 116
GG L ++++ +++ + + C AS +C C + L +
Sbjct: 59 GGGCLLDCDLRELSLYRLLEIMGDDDRINACMASE-YECSWEKKCRKHCEIRRKLCRIQM 117
Query: 117 AFFDVLTQYSI 127
L Q+S+
Sbjct: 118 QLQKELDQHSV 128
>gi|116250351|ref|YP_766189.1| Rrf2 transcriptional regulator [Rhizobium leguminosarum bv. viciae
3841]
gi|115254999|emb|CAK06073.1| putative Rrf2 transcriptional regulator [Rhizobium leguminosarum
bv. viciae 3841]
Length = 166
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 59/137 (43%), Gaps = 7/137 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I + + + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
+GG RL + +I++LD+V A E S C + D C + + + K
Sbjct: 61 PKGGYRLAKAPKEISLLDIVLAVEGSAPAFRCAEIRQRGPNPVSDRLFAQPCTINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECL 130
A + L + S+ +
Sbjct: 121 AERVYRAELAKTSLADI 137
>gi|107022281|ref|YP_620608.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia AU 1054]
gi|116689227|ref|YP_834850.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia HI2424]
gi|105892470|gb|ABF75635.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia AU 1054]
gi|116647316|gb|ABK07957.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia HI2424]
Length = 151
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 6/150 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120
Query: 119 FDVLTQYSI----ECLVRNRSSIKKIFNAG 144
L ++ ++ ++ AG
Sbjct: 121 EASLATRTLVDVTADMLDREQRTQRAARAG 150
>gi|301166453|emb|CBW26029.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 139
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M RT I +++ ++ D P ++ + + + + +IL L KA IV++ +G
Sbjct: 1 MKKNSRTSVAIHSVLHLSMM-DRPVTSEELGQCQNTNPVMIRRILGDLKKAEIVDSEKGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-CGLTS-VLRKALNAF 118
GG L + IT D+ A +S + +C ++ C L +A
Sbjct: 60 GGGWILLKSPKAITFQDIFMALNDSLLPSPIELDEGENCLIMKEICSTMDEFLDEAEILL 119
Query: 119 FDVLTQYSIECLVRN 133
L++ +I+ L+
Sbjct: 120 AKKLSKITIQSLINQ 134
>gi|227890967|ref|ZP_04008772.1| transcriptional regulator [Lactobacillus salivarius ATCC 11741]
gi|227867376|gb|EEJ74797.1| transcriptional regulator [Lactobacillus salivarius ATCC 11741]
Length = 153
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ + ++IA + + + ++ L KAG++ G
Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNGDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PA +I++LDV +A + + +C + + L +V ++ NA
Sbjct: 61 -AKASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQDTLNNVYQRVQNAA 119
Query: 119 FDVLTQYSIECLVR 132
++Q SI+ ++
Sbjct: 120 ELEMSQISIQDVID 133
>gi|170747484|ref|YP_001753744.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
radiotolerans JCM 2831]
gi|170654006|gb|ACB23061.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
radiotolerans JCM 2831]
Length = 155
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 7/133 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A H D P I + + + + + L AG V++ +G
Sbjct: 10 RLSRT----LHVLLHMARH-DGPMTSEAIGRMLGTNPVVVRRTMAGLRNAGYVKSEKGHG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG + +++LDV +A A C + + + LR+A
Sbjct: 65 GGWTIAADLSAVSLLDVHRAVGGPRIFAIGSDRANPACAVEKVVNEAVEETLREAEALLI 124
Query: 120 DVLTQYSIECLVR 132
L S+ L R
Sbjct: 125 ARLGSVSLAELAR 137
>gi|116334813|ref|YP_796340.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
gi|116100160|gb|ABJ65309.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
ATCC 367]
Length = 144
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L+Y I + IA + + + +++ + KAG++ + G
Sbjct: 1 MKYSHKLSDAIHILVYVQIAPTGQLDSATIANSVEANPSVVRRLMAAMKKAGLLMSRAGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
RL RPA QIT+ V A E + + IDCP+ + L + A
Sbjct: 61 AEP-RLARPASQITLQAVFHAVEMNHDLLHVDPQTNIDCPVGANIQQALDEAYARVQQAA 119
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
L + +++ +V +++
Sbjct: 120 EAELAKLTVQDIVDRVQGLRQ 140
>gi|332358706|gb|EGJ36529.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK355]
Length = 150
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|324993824|gb|EGC25743.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK405]
gi|324994855|gb|EGC26768.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK678]
gi|327474699|gb|EGF20104.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK408]
gi|328946722|gb|EGG40860.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK1087]
Length = 159
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 69
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 70 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 128 AIQAAMEAELAQTSLDEVVA 147
>gi|237746415|ref|ZP_04576895.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377766|gb|EEO27857.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 144
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + Y ++++ A+ +D P ++ I+ IS L I + LV A ++E
Sbjct: 1 MRIATKERYALKMMADLAVASDSEPVSLTAISTRQNISVGSLRVIAEALVLASLIEADSH 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA-- 117
R L + D+I + D+ ++T+ F C + +C C
Sbjct: 61 RPYHYHLAQQPDRIRLQDIFRSTDGRFACLACNDARPDECRRYRVCSRVHFWEGLQEIDL 120
Query: 118 -FFDV-LTQYSIEC-LVRNRSSI 137
D ++ ++ L + ++ +
Sbjct: 121 PLHDANMSLKTLADYLTKRKTPL 143
>gi|125623396|ref|YP_001031879.1| putative transcriptional regulator [Lactococcus lactis subsp.
cremoris MG1363]
gi|806485|gb|AAC41452.1| ORF156 [Lactococcus lactis subsp. cremoris]
gi|124492204|emb|CAL97133.1| putative transcriptional regulator [Lactococcus lactis subsp.
cremoris MG1363]
gi|300070144|gb|ADJ59544.1| putative transcriptional regulator [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 156
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G
Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
+ GG L + I+ DV A E + + + + C +T+ L +
Sbjct: 61 KNGGFSLNKDLHDISFYDVFLAIEGRGRIFQSQGLLQNFIGAESGKAQHCAITTALDEIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
N L+ S+ +
Sbjct: 121 NTLVRTLSNVSLAQVADE 138
>gi|56964902|ref|YP_176633.1| transcriptional regulator [Bacillus clausii KSM-K16]
gi|56911145|dbj|BAD65672.1| transcriptional regulator [Bacillus clausii KSM-K16]
Length = 169
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 6/146 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + + +L+ A + I+ +S +L KI++ LV + ++ +V G
Sbjct: 1 MKIKSGVEQAVCILVILATQTGQQHVKSDTISARLRVSPSYLKKIMRKLVISKLITSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKA 114
GG L + + IT+LD+++A E + + +I GS L ++ +A
Sbjct: 61 NSGGFALAKSPEAITMLDILEAIEGTSPFFQTEGLIQYVFPEIPAAEAGSKRLEAIFLEA 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKI 140
+ L + ++ + + +KI
Sbjct: 121 QEQYMASLAKTTLAEAIHQTLNREKI 146
>gi|148261260|ref|YP_001235387.1| BadM/Rrf2 family transcriptional regulator [Acidiphilium cryptum
JF-5]
gi|146402941|gb|ABQ31468.1| transcriptional regulator, BadM/Rrf2 family [Acidiphilium cryptum
JF-5]
Length = 97
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 1/98 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++ TDY + VL+ A IA I E + K+L+ L ++G+V + RG
Sbjct: 1 MRLSRLTDYAVVVLVRLA-QAGCVETAPSIAAGTGIPEPTVAKVLKGLAQSGLVSSQRGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKID 98
GG RL RP I I DV+ A + + C
Sbjct: 60 HGGYRLGRPLAAIPIADVIVAIDGPIALTACVEGTGGS 97
>gi|49478477|ref|YP_037503.1| transcriptional regulator [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|49330033|gb|AAT60679.1| possible transcriptional regulator (rrf2 family protein) [Bacillus
thuringiensis serovar konkukian str. 97-27]
Length = 137
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ + + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESAGVHPVRIRKVLGLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R D++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLDEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEYLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|78065784|ref|YP_368553.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
gi|77966529|gb|ABB07909.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
Length = 151
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 2/141 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R IT+LDV +A +++ A + C + L + A A
Sbjct: 61 GGGALLAREPGAITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGALIDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRNRSSIKK 139
L ++ + + ++++
Sbjct: 121 EASLGTRTLADVTADVLNLEQ 141
>gi|325696155|gb|EGD38046.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK160]
Length = 149
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|257886094|ref|ZP_05665747.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257821950|gb|EEV49080.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
Length = 155
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 61/142 (42%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I VL+Y + D IA + + + KI+ L K+G++ T G
Sbjct: 1 MKYSLQFSDAIHVLVYIEMFQDTQSLSSEMIASSIETNAANVRKIMSQLKKSGLIFTKTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ L + DQI++LDV ++ E + + + +C + + L +
Sbjct: 61 KPQPS-LAKSPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQKK 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+ + + +++ L+ + ++K
Sbjct: 120 AEEEMAKITLDSLIHKIAVLEK 141
>gi|42518338|ref|NP_964268.1| hypothetical protein LJ0251 [Lactobacillus johnsonii NCC 533]
gi|41582622|gb|AAS08234.1| hypothetical protein LJ_0251 [Lactobacillus johnsonii NCC 533]
Length = 149
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 59/142 (41%), Gaps = 6/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK + I +L A+ +P IA++ + ++ KI+ L I+E+ RG+
Sbjct: 1 MKDTKFS-IAIHILSMIALSP-HPINSVDIAKSVGTNPSYIRKIMSLLKDHKIIESHRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
G++L + +L + K EE + + + +CP+ + + L A
Sbjct: 59 -TGIQLLVDPGDLDLLTIYKIVEEENPHIFQVHQNANAECPVGRNIVNAVFPFLDDAEKR 117
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
L ++ ++ +++
Sbjct: 118 LQHSLQHDTLADVIDRLKQLER 139
>gi|70725313|ref|YP_252227.1| hypothetical protein SH0312 [Staphylococcus haemolyticus JCSC1435]
gi|68446037|dbj|BAE03621.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 160
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 6/136 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ + +++ + +++ +S+ +L KI++ LVK G+V + G
Sbjct: 1 MKLSIGWEQAVYVLLMLNLLSEHSVMTSTALSDRLNVSDSYLKKIIKALVKEGLVNSSTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKA 114
+ GG L +P +QIT DV A E + + + C ++ L
Sbjct: 61 KNGGFSLNKPLNQITFYDVFLAIEGRDAIFSSQQLLKPFLGENEGQKAEMCVVSHALNTI 120
Query: 115 LNAFFDVLTQYSIECL 130
+ L+ +++ +
Sbjct: 121 QHTLISTLSSITLDEV 136
>gi|206560912|ref|YP_002231677.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
gi|198036954|emb|CAR52866.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
Length = 177
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A D P +A + + + + + L +AGIV + RG GG R+
Sbjct: 39 LHALLHMAEQ-DGPVTSETLALCLGTNPVVVRRTMGYLRQAGIVTSERGHSGGWRIHADL 97
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ + +A E A + +C + + L +A ++ ++
Sbjct: 98 GSVTLRQLHEALGEPATFAIGNRNETPECLVEQTVNAALEGTFAEAEALLLKRFSEITLA 157
Query: 129 CLVRN 133
L +
Sbjct: 158 DLASD 162
>gi|332653231|ref|ZP_08418976.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
gi|332518377|gb|EGJ47980.1| Rrf2 family protein [Ruminococcaceae bacterium D16]
Length = 152
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 6/138 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + L++ ++E+ + + + IL L KAG++ TV
Sbjct: 1 MQISMKCSIAVHCLIFIHEAKGIAKVTSGLLSESTGSNPVVIRNILSALKKAGLI-TVPR 59
Query: 60 RRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
GG LC QIT+ + A E + + + CP+ + L + +K
Sbjct: 60 GTGGAELCADPSQITLYQIYTALEPNGLSSLIGIHPCQQRPCPVAQNIRRVLQTPYQKIE 119
Query: 116 NAFFDVLTQYSIECLVRN 133
++ + +++ ++
Sbjct: 120 DSIKQAMEGITLQSMIDE 137
>gi|288573879|ref|ZP_06392236.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
peptidovorans DSM 11002]
gi|288569620|gb|EFC91177.1| transcriptional regulator, BadM/Rrf2 family [Dethiosulfovibrio
peptidovorans DSM 11002]
Length = 159
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 3/122 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + A+ RI ++A+A SE + K+ Q LV+AG+V +VRG GG L +
Sbjct: 14 ALHGMGILAL-AGKRMRIREMAKAVEASEAHMAKVFQRLVRAGLVGSVRGPAGGFELLKK 72
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
+I++ V +A E C CP C + F D L S+
Sbjct: 73 PSEISLYVVYRAIEGDLRPKSCVLGLSR-CPFRE-CMFGDFPNRVYEEFTDHLKSRSLGE 130
Query: 130 LV 131
LV
Sbjct: 131 LV 132
>gi|229085778|ref|ZP_04218006.1| Transcriptional regulator [Bacillus cereus Rock3-44]
gi|228697577|gb|EEL50334.1| Transcriptional regulator [Bacillus cereus Rock3-44]
Length = 131
Score = 74.6 bits (182), Expect = 4e-12, Method: Composition-based stats.
Identities = 36/127 (28%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 14 LMYCAIHNDYPNR-ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++Y + + + Q+A+ +S +L KIL LVKAG++E+ G GG + R +
Sbjct: 1 MVYLTLTPKGKSTGVEQLAKIQNLSPTYLSKILTKLVKAGLIESNPGVNGGYSIVRRSHN 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
I+ LDV+ A E + C H+ C + +V+ A N D L + I + +
Sbjct: 61 ISFLDVIHAIEGQTTLFSCSLEHEKL-FRNDDCLIENVMIDAENKMKDELNKKYIIDIAK 119
Query: 133 NRSSIKK 139
S KK
Sbjct: 120 QIQSKKK 126
>gi|116333047|ref|YP_794574.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
gi|116098394|gb|ABJ63543.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
ATCC 367]
Length = 146
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L Y I+ D+ + IA + + + +++ L +A ++ T +G
Sbjct: 1 MRYSHKLSDAVHILAYIVIYRDHDLSSAAIAASVTSNPALVRRLMGALRRANLLATTQGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+L R IT+LD+ +A E + C + G+ L + + A
Sbjct: 61 AAP-KLARDPALITLLDIYRAVENPGDLLHVDEETNPKCIVGGNIQATLETAYSEVQQAA 119
Query: 119 FDVLTQYSIECLVRN 133
+ Q ++ L+ +
Sbjct: 120 ERQMQQITLASLITD 134
>gi|116691671|ref|YP_837204.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia HI2424]
gi|116649671|gb|ABK10311.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia HI2424]
Length = 159
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA C + + + ++L L G V++ +G
Sbjct: 19 RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 73
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A +
Sbjct: 74 GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLL 133
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 134 ARFGEVTLGMLSRD 147
>gi|308068789|ref|YP_003870394.1| transcriptional regulator [Paenibacillus polymyxa E681]
gi|305858068|gb|ADM69856.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
Length = 144
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 6/139 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L+ A S IA + + + + +I+ L +AG+V++ G R
Sbjct: 1 MSTHFSVSIHCLLLLAEGAPERMTSSLIASSINTNPVVVRRIMSRLKQAGLVDSSPGAR- 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
G RL + I + + +AT++ + +C + + L + A
Sbjct: 60 GFRLSMSSSNINLKMIYEATKDEGPLFAIHTDSNHNCEVGRNIDALLDGLYTVAEQKIQA 119
Query: 121 VLTQYSIECLVRNRSSIKK 139
++ L ++++
Sbjct: 120 FFETVTLRDL---EQALQQ 135
>gi|255322125|ref|ZP_05363272.1| RRF2 family protein [Campylobacter showae RM3277]
gi|255300823|gb|EET80093.1| RRF2 family protein [Campylobacter showae RM3277]
Length = 151
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + ++ I +L+ C D N +A + + + I++ L A ++ G
Sbjct: 12 MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTIGTNPVIVRNIIRLLKSANLINVSAG- 70
Query: 61 RGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
GG L + +QIT+ D+ A E + + + CPL G LT A A
Sbjct: 71 TGGASLAKKPEQITLFDIFSAVNEGENDIFKIHKNSPPPCPLGGRIEALLTPKFGSAQQA 130
Query: 118 FFDVLTQYSIECLVRN 133
FD L +++ L+
Sbjct: 131 MFDSLAGVNLQNLLDE 146
>gi|52081678|ref|YP_080469.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580]
gi|52787064|ref|YP_092893.1| hypothetical protein BLi03369 [Bacillus licheniformis ATCC 14580]
gi|319647593|ref|ZP_08001812.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2]
gi|52004889|gb|AAU24831.1| hypothetical protein BL02553 [Bacillus licheniformis ATCC 14580]
gi|52349566|gb|AAU42200.1| conserved hypothetical protein [Bacillus licheniformis ATCC 14580]
gi|317390319|gb|EFV71127.1| hypothetical protein HMPREF1012_02851 [Bacillus sp. BT1B_CT2]
Length = 144
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ R + +L + +D+ QIA++ + + + +I + L KAG++E RG
Sbjct: 1 MKISSRFTIAVHMLSLMHVRSDH-LTSEQIADSVNTNPVIIRQISRLLKKAGLIEVKRG- 58
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
GG L R A I++ DV KA E + + DC + + L VL KA
Sbjct: 59 TGGAHLLRDAGAISLYDVYKAVEVVGEGELFHTHENPNPDCWVGANIHQVLELVLLKAQT 118
Query: 117 AFFDVLTQYSIECLVR 132
A ++L + SI+ L
Sbjct: 119 AMENILKEMSIKELTD 134
>gi|323351192|ref|ZP_08086848.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
VMC66]
gi|322122416|gb|EFX94127.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
VMC66]
Length = 169
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 21 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 79
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 80 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 137
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 138 AIQAAMEAELAQTSLDEVVA 157
>gi|296331295|ref|ZP_06873767.1| hypothetical protein BSU6633_09336 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676281|ref|YP_003867953.1| hypothetical protein BSUW23_18045 [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296151410|gb|EFG92287.1| hypothetical protein BSU6633_09336 [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414525|gb|ADM39644.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
str. W23]
Length = 133
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L ++ D IA + + + + +++ L KA I+ + G
Sbjct: 2 INSRLSVAIHILSLISM--DEKESSETIAGSVNTNPVVVRRMISMLKKADILTSRAGVP- 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + I++L+V +A ++ + + +CP+ L A D
Sbjct: 59 GASLKKDPADISLLEVYRAVQKQDELFAIHENPNPNCPVGKRIQNALDETFESVQKAMED 118
Query: 121 VLTQYSIECLVRN 133
L S++ ++ +
Sbjct: 119 ELASKSLKDVMNH 131
>gi|262282684|ref|ZP_06060452.1| RRF2 family protein [Streptococcus sp. 2_1_36FAA]
gi|262261975|gb|EEY80673.1| RRF2 family protein [Streptococcus sp. 2_1_36FAA]
Length = 149
Score = 74.6 bits (182), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 58/140 (41%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQI-AEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ S I A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKRKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIAKDLKDISLLDVYCAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|116511357|ref|YP_808573.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis
subsp. cremoris SK11]
gi|116107011|gb|ABJ72151.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis
subsp. cremoris SK11]
Length = 156
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ A + + +A +S +L KI++ LV G++ + G
Sbjct: 1 MKLSSGWEQSVYVLLILARLPENRTMSSIALANRLKVSPSYLKKIIKSLVDEGLLRSTTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKAL 115
+ GG L + I+ DV A E + + + + C +T+ L +
Sbjct: 61 KNGGFSLNKDLLDISFYDVFLAIEGRGRIFQSQGLLQNFIGAESGKAQHCAITTALDEIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
N L+ S+ +
Sbjct: 121 NTLVRTLSNVSLAQVADE 138
>gi|148242252|ref|YP_001227409.1| transcriptional regulator [Synechococcus sp. RCC307]
gi|147850562|emb|CAK28056.1| Predicted transcriptional regulator [Synechococcus sp. RCC307]
Length = 149
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 61/141 (43%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
LT+ +R L+ A ++A+ + E L +IL L +A +VE RGR G
Sbjct: 2 LTRAGTIALRALVELARSPHSVISGPELAKRQELPEARLEQILLQLRQAQLVEARRGRSG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL R AD +++ DV+ A + S + G + ++ A L
Sbjct: 62 GYRLSRRADDLSVQDVLDAVGGRRQLNLEIESAEGAIGQAGQRLEQQLQQRLQRAMEREL 121
Query: 123 TQYSIECLVRNRSSIKKIFNA 143
+Q ++ L+ ++ S + +
Sbjct: 122 SQLTVAELLYDQRSWEASLDP 142
>gi|311030960|ref|ZP_07709050.1| transcriptional regulator, BadM/Rrf2 family protein [Bacillus sp.
m3-13]
Length = 137
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 8/134 (5%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
TK I+ L+ A +N+ ++AE +FL KIL+ LVK +++ GR GG
Sbjct: 8 TKWFSVAIQALVVLA-NNEGRCPSGELAEKLNSKSVFLRKILRHLVKTELIQAKEGRDGG 66
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDC----PLVGSCGLTSVLRKALNAFF 119
L + +I + +V A + F F +C C L +
Sbjct: 67 YFLVKDPSEIKLSEVYDAMKAETFPKGFFNVESKECFASTTRESLCTLR---DEMEGWVV 123
Query: 120 DVLTQYSIECLVRN 133
L Q +I L++
Sbjct: 124 AGLEQKTIADLMKK 137
>gi|284989652|ref|YP_003408206.1| BadM/Rrf2 family transcriptional regulator [Geodermatophilus
obscurus DSM 43160]
gi|284062897|gb|ADB73835.1| transcriptional regulator, BadM/Rrf2 family [Geodermatophilus
obscurus DSM 43160]
Length = 165
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 54/133 (40%), Gaps = 1/133 (0%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T R DY +R + A +IA A I FL IL L A +V + RGR
Sbjct: 6 RITARVDYAVRAAVELAAAAPGALTCDRIAAAQGIPSRFLQSILSDLQHARLVTSQRGRE 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG RL P +++I V++ + ++ L SV A A+ V
Sbjct: 66 GGYRLALPPAEVSIARVMRVEQGFLAEVHGQRPEDVEYSGTAV-PLASVWVAAREAYRRV 124
Query: 122 LTQYSIECLVRNR 134
L Q ++ +V
Sbjct: 125 LEQVTLADVVAGE 137
>gi|308175394|ref|YP_003922099.1| hypothetical protein BAMF_3503 [Bacillus amyloliquefaciens DSM 7]
gi|307608258|emb|CBI44629.1| conserved hypothetical protein [Bacillus amyloliquefaciens DSM 7]
gi|328555369|gb|AEB25861.1| hypothetical protein BAMTA208_18555 [Bacillus amyloliquefaciens
TA208]
gi|328913739|gb|AEB65335.1| hypothetical protein LL3_03809 [Bacillus amyloliquefaciens LL3]
Length = 134
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L + D IA + + + + + + L KAGI+ + G
Sbjct: 2 INSRLAVAIHILSLIST--DERASSDMIAGSVNTNPVVVRRTISQLKKAGILTSRAGVP- 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + +IT+L+V +A + + + DCP+ + L A +
Sbjct: 59 GASLKKDPSEITLLEVYRAVQNKEELFAVHDNPNPDCPVGKNIQRALDETFGSVQRAMEN 118
Query: 121 VLTQYSIECLVRN 133
L S+ ++ +
Sbjct: 119 ELASKSLYDVMNH 131
>gi|125718392|ref|YP_001035525.1| hypothetical protein SSA_1586 [Streptococcus sanguinis SK36]
gi|125498309|gb|ABN44975.1| Conserved hypothetical protein [Streptococcus sanguinis SK36]
Length = 150
Score = 74.2 bits (181), Expect = 5e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGRKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|297620718|ref|YP_003708855.1| putative HTH-type transcriptional repressor [Waddlia chondrophila
WSU 86-1044]
gi|297376019|gb|ADI37849.1| putative HTH-type transcriptional repressor [Waddlia chondrophila
WSU 86-1044]
Length = 144
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ ++Y +R+++ A + + ++A+ +SE + KILQ L +AG+V+ +G
Sbjct: 2 LSSTSEYALRIMVILAHQKENSFLKGKELAKETKVSEAYSAKILQLLNRAGLVQAQKGLG 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L R AD+I++ D++ A + EC C L L F +
Sbjct: 62 GGYLLSRSADEISLFDIINAVDPFTRFDECPLGIA---EHKTLCPLHRKLDNVYADFQKI 118
Query: 122 LTQYSIECLVRNRSS 136
S+ +NR
Sbjct: 119 FKDCSLSTFSKNREQ 133
>gi|238855677|ref|ZP_04645976.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus jensenii
269-3]
gi|260664938|ref|ZP_05865789.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
gi|282933382|ref|ZP_06338763.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
208-1]
gi|313472516|ref|ZP_07813006.1| Rrf2 family protein [Lactobacillus jensenii 1153]
gi|238831699|gb|EEQ24037.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus jensenii
269-3]
gi|239529949|gb|EEQ68950.1| Rrf2 family protein [Lactobacillus jensenii 1153]
gi|260561421|gb|EEX27394.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
gi|281302486|gb|EFA94707.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus jensenii
208-1]
Length = 143
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I + IA + + + +++ L A ++ET +G+
Sbjct: 1 MKYSYKFSDAIHLLSYLEIFKNEDLSSRAIAASIESNPSIIRQLMSDLRSAVLIETRQGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
RL R IT+ D+ A + + ++C + + + + N+
Sbjct: 61 -ASARLIRKPSDITLFDIYMAIDIDHELLHVDPKTNLNCSVGRNVQTSLVGFYEEIQNSA 119
Query: 119 FDVLTQYSIECLVRN 133
F+ + + +++ ++ +
Sbjct: 120 FEQMKKITLQDVISD 134
>gi|307323805|ref|ZP_07603014.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306890254|gb|EFN21231.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 143
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + ++ QIA + + + + ++L L + G+V++
Sbjct: 1 MSANSRLTIAAHALTWIGLYQRRGHDVATSEQIATSVNTNPVVIRRLLSELRRTGLVDSR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
RG G L R IT+LDV +A E A ++ +C + LT+V +
Sbjct: 61 RGAGAGWTLSRDLAAITLLDVYEAVEPGPVFALHRSAPDPECVVGHGIGPALTAVYGEIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
L + ++E ++R+
Sbjct: 121 ATLRRELARTTLEDVLRD 138
>gi|157150627|ref|YP_001450032.1| RRF2 family protein [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075421|gb|ABV10104.1| RRF2 family protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 149
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIAKDLKDISLLDVYCAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMEAELAQTSLDEVVA 137
>gi|170732528|ref|YP_001764475.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia MC0-3]
gi|254245838|ref|ZP_04939159.1| hypothetical protein BCPG_00558 [Burkholderia cenocepacia PC184]
gi|124870614|gb|EAY62330.1| hypothetical protein BCPG_00558 [Burkholderia cenocepacia PC184]
gi|169815770|gb|ACA90353.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia MC0-3]
Length = 151
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 6/150 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGMPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPGEITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTGYIGDAQRAM 120
Query: 119 FDVLTQYSI----ECLVRNRSSIKKIFNAG 144
L ++ ++ ++ AG
Sbjct: 121 EASLATRTLVDVTADMLDREQRTQRAARAG 150
>gi|325676084|ref|ZP_08155766.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|325553124|gb|EGD22804.1| Rrf2 family transcriptional regulator [Rhodococcus equi ATCC 33707]
Length = 152
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH++ R D +R + A + ++ + ++ FL +L L + G+V++ RG
Sbjct: 1 MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPA +TI DV++ E + L V
Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVEGPLASVRGERPEDVTYDGAAE-SLQQVWIAVRVNLR 119
Query: 120 DVLTQYSIECLVR 132
VL +I +
Sbjct: 120 TVLEGVTIADVAA 132
>gi|317056183|ref|YP_004104650.1| BadM/Rrf2 family transcriptional regulator [Ruminococcus albus 7]
gi|315448452|gb|ADU22016.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus albus 7]
Length = 143
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T DY +R+ + I++ C++ F KIL+ LV AG+V++ +G
Sbjct: 1 MYITLEADYAVRITAAL-CRAEGKLDAKTISDQTCVTLRFSLKILRKLVSAGLVQSFKGT 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
+GG + IT+ V++A E + + C +C S C
Sbjct: 60 QGGYMIAMEPKDITLRMVIEAIEGKYCFSRCLQED-AECSRGASGKCPFQDAFCDITKMV 118
Query: 119 FDVLTQYSIECL 130
+ L ++ L
Sbjct: 119 SEKLDSHNFAEL 130
>gi|312137813|ref|YP_004005149.1| transcriptional regulator [Rhodococcus equi 103S]
gi|311887152|emb|CBH46461.1| putative transcriptional regulator [Rhodococcus equi 103S]
Length = 152
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 52/133 (39%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH++ R D +R + A + ++ + ++ FL +L L + G+V++ RG
Sbjct: 1 MHISARVDCAVRALVDLAAADAPALVKADALSASQSVAPKFLEAVLADLRRGGLVDSRRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPA +TI DV++ E + L V
Sbjct: 61 PDGGYRLTRPATDVTIADVIRTVEGPLASVRGERPEDVTYDGAAE-SLQQVWIAVRVNLR 119
Query: 120 DVLTQYSIECLVR 132
VL +I +
Sbjct: 120 TVLEGVTIADVAA 132
>gi|171317789|ref|ZP_02906970.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
gi|171097073|gb|EDT41928.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MEX-5]
Length = 146
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 57/134 (42%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA + + + ++L L G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDCGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A
Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 121 ARFGEVTLGMLSRD 134
>gi|94311031|ref|YP_584241.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
metallidurans CH34]
gi|93354883|gb|ABF08972.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
metallidurans CH34]
Length = 144
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 59/133 (44%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L +AG V T G
Sbjct: 1 MSTSSRFAVAVHILTLLA-QAEGPVPSSMIAGSVGTNPALIRRMIGALTEAGFVTTTMGS 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPA QIT+L+V +ATE + + ++ C + L V +A A
Sbjct: 60 TGGAMLTRPASQITLLEVFQATETTALITLHQSAPNPACLVGREITGTLQVVADRAQAAM 119
Query: 119 FDVLTQYSIECLV 131
L + +I ++
Sbjct: 120 DATLAEITIASML 132
>gi|307324043|ref|ZP_07603252.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306890492|gb|EFN21469.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 152
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDY-GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + DY L A D + IA A I FL IL L + G+V + RG
Sbjct: 1 MRISAKADYAVRAALELAAAGADTSVKAEVIAGAQGIPHKFLEGILGDLRRGGLVASQRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG RL RPAD I+I +V++ + ++ + L +
Sbjct: 61 GNGGYRLARPADTISIAEVIRVVDGPLVSVRGVRPPELSYC-GPAESLLPLWIAVRANVR 119
Query: 120 DVLTQYSIECLVRNR 134
+L + ++ + R
Sbjct: 120 KILGEVTLAEVAAAR 134
>gi|284034151|ref|YP_003384082.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283813444|gb|ADB35283.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
17836]
Length = 158
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
++G+ + + ++A + +L K LQ L +AGI+ + G +GG +L
Sbjct: 5 VEWGMHTCVNLSWMPGEALPAKKLAAFYELPTAYLNKQLQALTRAGILSSTSGPKGGFQL 64
Query: 67 CRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKALNAFFD 120
RP D+IT+LD+V A + C +C ++ +R+A +
Sbjct: 65 ARPTDRITLLDIVVAIDGPDEAFRCTEILKAGPGADPREDYRTTCLISQAMRQAELVYRR 124
Query: 121 VLTQYSIECLVRN 133
L +I +V +
Sbjct: 125 ELAARTIADIVAD 137
>gi|225855064|ref|YP_002736576.1| Rrf2 family protein [Streptococcus pneumoniae JJA]
gi|225722419|gb|ACO18272.1| Rrf2 family protein [Streptococcus pneumoniae JJA]
gi|301794623|emb|CBW37071.1| putative transcriptional regulator protein [Streptococcus
pneumoniae INV104]
Length = 145
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R +L+ A+ +A + ++ + + KIL L KA ++ +V
Sbjct: 1 MQIPSRFTIATHMLIIIALEGKKSKVTSDFLAASVGVNPVIIRKILSQLKKAELI-SVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLR---- 112
GG + + I++LDV +A E ++ + + +CP+ + VL
Sbjct: 60 GTGGTDIVKDLKDISLLDVYQAVECLGKTGQLFSFHDNPNPNCPVGAH--IHDVLDQKLE 117
Query: 113 KALNAFFDVLTQYSIECLVRNRSS 136
+ L Q S+E +V + S
Sbjct: 118 RIQLTMEAELGQTSLEKVVADAES 141
>gi|254467026|ref|ZP_05080437.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
bacterium Y4I]
gi|206687934|gb|EDZ48416.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
bacterium Y4I]
Length = 142
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 2/123 (1%)
Query: 13 VLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + I++ IS +L ++ L ++G+VE+VRG GG RL +PA
Sbjct: 3 ALADIALQTQGDLVPLGDISKRQDISLPYLEQLFVKLRRSGLVESVRGPGGGYRLAKPAS 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECL 130
+I I+DV+ A +E+ A + LT+ + + L Q + +
Sbjct: 63 EIRIVDVLSAVDETVDAMHKGAGASGALSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRN 133
++N
Sbjct: 123 IKN 125
>gi|296126632|ref|YP_003633884.1| BadM/Rrf2 family transcriptional regulator [Brachyspira murdochii
DSM 12563]
gi|296018448|gb|ADG71685.1| transcriptional regulator, BadM/Rrf2 family [Brachyspira murdochii
DSM 12563]
Length = 149
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ + + +Y +I + IAE +S L K+LQ LVKAG + + +G G
Sbjct: 4 ISEASAIALHSAVYISIK--EFASLKDIAERFDVSSNHLSKVLQALVKAGYLTSSKGPAG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G ++ + + L++ + E + C K D +C + ++ F + +
Sbjct: 62 GFKIAEGKENTSFLEIYETIEGKNWQRSCLFHSKCD-KYCSNCIMGDLVNDINRKFKNYM 120
Query: 123 TQYSIEC--LVRNRSSIKK 139
++I+ L+ I K
Sbjct: 121 ESHTIKDHYLLDKDFKINK 139
>gi|254445085|ref|ZP_05058561.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
DG1235]
gi|198259393|gb|EDY83701.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
DG1235]
Length = 137
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + DY R L A + +RI ++A+ I +L +IL L G++E+ R
Sbjct: 1 MKLSVKLDYACRALARMASRRPSGELSRIEELADVEAIPANYLVQILGELRNGGLIESRR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G++GG L R ++IT+ +V+ + F + + + + F
Sbjct: 61 GKQGGYLLARAPEEITLREVIALVQGDVF------GSVANPVGGSGSTVAKTWKVLQDCF 114
Query: 119 FDVLTQYSIECLVRN 133
++ ++ L+ +
Sbjct: 115 EQKASELTVRDLMPD 129
>gi|311745248|ref|ZP_07719033.1| Rrf2 family protein [Algoriphagus sp. PR1]
gi|126577775|gb|EAZ81995.1| Rrf2 family protein [Algoriphagus sp. PR1]
Length = 136
Score = 74.2 bits (181), Expect = 6e-12, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 62/135 (45%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ T+ I +L A + IA + I+ + + K + L KAG+VE+ +G+
Sbjct: 1 MNNTRFAT-AIHILTLLADSEEEWMSSDWIAGSININPVMVRKEIGVLTKAGLVESRKGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG +L + + I + ++ A + S + + + CP+ + L S+ + N+
Sbjct: 60 VGGSKLAKRSSDIRLDEIYLAVKNSDVLGKKNLKPNVLCPIGKNINQKLGSLFSEIDNSV 119
Query: 119 FDVLTQYSIECLVRN 133
D L ++E V+
Sbjct: 120 IDELHGKTLENFVKK 134
>gi|294054230|ref|YP_003547888.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
akajimensis DSM 45221]
gi|293613563|gb|ADE53718.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
akajimensis DSM 45221]
Length = 137
Score = 73.8 bits (180), Expect = 6e-12, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 8/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ + +Y RVL D I +A+A I +L +IL L AG++ + R
Sbjct: 1 MKLSHKLEYACRVLAQLGRSYGQDKLAHIDTLADAEKIPANYLVQILNELRTAGLITSKR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G++GG L R +I + +V+A + + + ++ F
Sbjct: 61 GKQGGYALSREPSKIQLSAIVQAVDAELL------EQHLSSDGHSGERVATIWGDIAKNF 114
Query: 119 FDVLTQYSIECLV 131
+ + +Y++E ++
Sbjct: 115 EEQVGRYTLEDMI 127
>gi|154687779|ref|YP_001422940.1| YwnA [Bacillus amyloliquefaciens FZB42]
gi|154353630|gb|ABS75709.1| YwnA [Bacillus amyloliquefaciens FZB42]
Length = 134
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L + D IA + + + + + + L KAGI+ + G
Sbjct: 2 INSRLAVAIHILSLIST--DERASSDMIAGSVNTNPVVVRRTISQLKKAGILTSRAGVP- 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + +IT+L+V +A + + + DCP+ + L A +
Sbjct: 59 GASLKKDPSEITLLEVYRAVQNREELFAVHDNPNPDCPVGKNIQRALDETFGSVQRAMEN 118
Query: 121 VLTQYSIECLVRN 133
L S+ ++ +
Sbjct: 119 ELASKSLYDVMNH 131
>gi|84686207|ref|ZP_01014102.1| hypothetical protein 1099457000256_RB2654_08387 [Maritimibacter
alkaliphilus HTCC2654]
gi|84665734|gb|EAQ12209.1| hypothetical protein RB2654_08387 [Rhodobacterales bacterium
HTCC2654]
Length = 144
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ H D P +I + + + + L AGIV +V+G GG L RP
Sbjct: 11 LHALLHLERH-DGPATSDEIGRMLNTNATVVRRTMGGLRDAGIVGSVKGHGGGWTLARPL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSIE 128
DQIT+L + A E A A C L + L A F L + ++
Sbjct: 70 DQITMLTIYDALGEPSLFALGQAQDAPGCRLEQAANTALGKALDGARRRFRKELERVTVA 129
Query: 129 CL 130
L
Sbjct: 130 DL 131
>gi|69245516|ref|ZP_00603480.1| Protein of unknown function UPF0074 [Enterococcus faecium DO]
gi|257879779|ref|ZP_05659432.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257882506|ref|ZP_05662159.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257891620|ref|ZP_05671273.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257894098|ref|ZP_05673751.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|258614203|ref|ZP_05711973.1| transcription regulator [Enterococcus faecium DO]
gi|260559454|ref|ZP_05831635.1| transcription regulator [Enterococcus faecium C68]
gi|261206604|ref|ZP_05921302.1| transcription regulator [Enterococcus faecium TC 6]
gi|289564966|ref|ZP_06445420.1| transcription regulator [Enterococcus faecium D344SRF]
gi|293553612|ref|ZP_06674236.1| transcription regulator [Enterococcus faecium E1039]
gi|293564096|ref|ZP_06678502.1| transcription regulator [Enterococcus faecium E1162]
gi|293570033|ref|ZP_06681113.1| transcription regulator [Enterococcus faecium E1071]
gi|294617015|ref|ZP_06696735.1| transcription regulator [Enterococcus faecium E1636]
gi|294618251|ref|ZP_06697833.1| transcription regulator [Enterococcus faecium E1679]
gi|294620949|ref|ZP_06700149.1| transcriptional regulator [Enterococcus faecium U0317]
gi|314940090|ref|ZP_07847273.1| Rrf2 family protein [Enterococcus faecium TX0133a04]
gi|314942501|ref|ZP_07849340.1| Rrf2 family protein [Enterococcus faecium TX0133C]
gi|314949391|ref|ZP_07852732.1| Rrf2 family protein [Enterococcus faecium TX0082]
gi|314952852|ref|ZP_07855824.1| Rrf2 family protein [Enterococcus faecium TX0133A]
gi|314993716|ref|ZP_07859061.1| Rrf2 family protein [Enterococcus faecium TX0133B]
gi|314994780|ref|ZP_07859912.1| Rrf2 family protein [Enterococcus faecium TX0133a01]
gi|68195767|gb|EAN10204.1| Protein of unknown function UPF0074 [Enterococcus faecium DO]
gi|257814007|gb|EEV42765.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257818164|gb|EEV45492.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257827980|gb|EEV54606.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|257830477|gb|EEV57084.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|260074553|gb|EEW62874.1| transcription regulator [Enterococcus faecium C68]
gi|260079097|gb|EEW66790.1| transcription regulator [Enterococcus faecium TC 6]
gi|289163173|gb|EFD11019.1| transcription regulator [Enterococcus faecium D344SRF]
gi|291587405|gb|EFF19289.1| transcription regulator [Enterococcus faecium E1071]
gi|291590169|gb|EFF21958.1| transcription regulator [Enterococcus faecium E1636]
gi|291595467|gb|EFF26778.1| transcription regulator [Enterococcus faecium E1679]
gi|291599479|gb|EFF30496.1| transcriptional regulator [Enterococcus faecium U0317]
gi|291602187|gb|EFF32415.1| transcription regulator [Enterococcus faecium E1039]
gi|291604014|gb|EFF33542.1| transcription regulator [Enterococcus faecium E1162]
gi|313590964|gb|EFR69809.1| Rrf2 family protein [Enterococcus faecium TX0133a01]
gi|313591816|gb|EFR70661.1| Rrf2 family protein [Enterococcus faecium TX0133B]
gi|313595086|gb|EFR73931.1| Rrf2 family protein [Enterococcus faecium TX0133A]
gi|313598722|gb|EFR77567.1| Rrf2 family protein [Enterococcus faecium TX0133C]
gi|313640690|gb|EFS05270.1| Rrf2 family protein [Enterococcus faecium TX0133a04]
gi|313644222|gb|EFS08802.1| Rrf2 family protein [Enterococcus faecium TX0082]
Length = 155
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I VL Y + D IA + + + KI+ L K+G++ T G
Sbjct: 1 MKYSLQFSDAIHVLAYIEMFQDTRSLSSEMIASSIETNAANVRKIMSQLKKSGLIFTKTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ L + DQI++LDV ++ E + + + +C + + L +
Sbjct: 61 KPQPS-LAKSPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQKK 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+ + + +++ L+ + ++K
Sbjct: 120 AEEEMAKITLDSLIHKIAVLEK 141
>gi|170743141|ref|YP_001771796.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium sp.
4-46]
gi|168197415|gb|ACA19362.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium sp.
4-46]
Length = 162
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 11 IRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ ++ A+H +A + L +LQ LV+ G+++ +RG GG L R
Sbjct: 28 VAAVIDIALHARPQAVSARALAARHGLPPRHLETVLQALVRHGLLKGLRGPHGGYELARE 87
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
+I + D+ +A + P + + +L A AF L ++E
Sbjct: 88 RRRIRVGDIARAVLA-------LGDGEAGRPAPAAGLIDPLLAAAGQAFLATLDAVTVEE 140
Query: 130 LVRNRSSIK 138
L R + +
Sbjct: 141 LCRRAEAAR 149
>gi|217960811|ref|YP_002339375.1| rrf2 family protein [Bacillus cereus AH187]
gi|217065699|gb|ACJ79949.1| rrf2 family protein [Bacillus cereus AH187]
Length = 137
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 55/132 (41%), Gaps = 3/132 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ I L Y A+ D + + I+E+ C+ + + K+L L K +++ G G
Sbjct: 1 MSSDFTLAIHSLTYLALQPDRMSTSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G R D++ + + + T E +C C + + L ++ A +
Sbjct: 61 GFIFARDLDEVNLWHIYQITSEGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGE 119
Query: 121 VLTQYSIECLVR 132
L Y+++ +V
Sbjct: 120 YLKNYTMKEVVD 131
>gi|83749686|ref|ZP_00946666.1| Rrf2 family protein [Ralstonia solanacearum UW551]
gi|207739012|ref|YP_002257405.1| cog1959, predicted transcriptional regulator protein [Ralstonia
solanacearum IPO1609]
gi|83723648|gb|EAP70846.1| Rrf2 family protein [Ralstonia solanacearum UW551]
gi|206592383|emb|CAQ59289.1| cog1959, predicted transcriptional regulator protein [Ralstonia
solanacearum IPO1609]
Length = 143
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L AG V + G
Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD+IT+LDV + E +A + C + L V +A +A
Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACEVGREITGVLERVTARAQSAM 119
Query: 119 FDVLTQYSIECLVRN 133
L +I ++
Sbjct: 120 ETELAAQTIAGMLAE 134
>gi|115522626|ref|YP_779537.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris BisA53]
gi|115516573|gb|ABJ04557.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris BisA53]
Length = 153
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T G+ ++ A H D IAE IS L K+L+ LV+A ++E+VRG
Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYDISLNHLAKVLRTLVRARLIESVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG ++T+LD++ A E S L VL +
Sbjct: 61 GGGYTFSGNPKRVTLLDII-ALFEDTSP---DPEQAASDKHEESRALHKVLHDIDDIAMT 116
Query: 121 VLTQYSIECLVR 132
L SI L++
Sbjct: 117 TLRSVSITSLLK 128
>gi|115360049|ref|YP_777187.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
AMMD]
gi|115285337|gb|ABI90853.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
AMMD]
Length = 146
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA + + + ++L L +G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLGTNPVVVRRLLGGLRDSGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A
Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 121 ARFGEVTLGMLSRD 134
>gi|90424127|ref|YP_532497.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris BisB18]
gi|90106141|gb|ABD88178.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris BisB18]
Length = 153
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ I + P +A+A + + + +I+ L AG V + +G GG +
Sbjct: 11 LHVLLHM-IGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDAGFVRSEKGHGGGWTIACDP 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
IT+ D+ +A +A + C + + L R+ AF L ++
Sbjct: 70 AAITLADIYRAVGAPAILAMGHRTESPGCLVEQAVNHALDGAFREVETAFMAKLGDVTLA 129
Query: 129 CLVRN 133
L ++
Sbjct: 130 VLAKD 134
>gi|90961949|ref|YP_535865.1| transcription regulator [Lactobacillus salivarius UCC118]
gi|90821143|gb|ABD99782.1| Transcription regulator [Lactobacillus salivarius UCC118]
Length = 153
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ + ++IA + + + ++ L KAG++ G
Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNDDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PA +I++LDV +A + + +C + + L V ++ +A
Sbjct: 61 -ARASLAKPASEISVLDVYRAITPTASLLHVDPKTNPNCVVGANIQNTLEEVYQRVQDAA 119
Query: 119 FDVLTQYSIECLVR 132
++Q SI+ ++
Sbjct: 120 ELEMSQISIQDVID 133
>gi|325525923|gb|EGD03623.1| putative transcriptional regulator [Burkholderia sp. TJI49]
Length = 158
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGAPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R +IT+LD+ +A +++ A + C + L + A A
Sbjct: 61 GGGALLAREPGEITLLDIYRAVDDAQLFALHREAPNPACLVGRHIQGALIGYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLADVTAD 135
>gi|207724271|ref|YP_002254668.1| cog1959, predicted transcriptional regulator protein [Ralstonia
solanacearum MolK2]
gi|206589487|emb|CAQ36448.1| cog1959, predicted transcriptional regulator protein [Ralstonia
solanacearum MolK2]
Length = 143
Score = 73.8 bits (180), Expect = 7e-12, Method: Composition-based stats.
Identities = 34/135 (25%), Positives = 56/135 (41%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L AG V + G
Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEEPVPSSLIAGSVGTNPALIRRLVALLADAGFVTSQMGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPAD+IT+LDV + E +A + C + L V +A +A
Sbjct: 60 SGGSTLARPADRITLLDVFRTVESPVLIALPHSQPNPACDVGREITGVLERVTARAQSAM 119
Query: 119 FDVLTQYSIECLVRN 133
L +I ++
Sbjct: 120 ETELAAQTIAGMLAE 134
>gi|254489600|ref|ZP_05102802.1| DNA-binding protein [Roseobacter sp. GAI101]
gi|214041770|gb|EEB82411.1| DNA-binding protein [Roseobacter sp. GAI101]
Length = 149
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/130 (23%), Positives = 58/130 (44%), Gaps = 4/130 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ +D + VL++ D P ++A++ + + + L AG V++ RG GG
Sbjct: 5 TRLSDV-LHVLLHL-NQVDEPVTSDRLAKSMGTNPAVFRRTMAGLRNAGYVQSGRGHGGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDV 121
L RP +IT+LD+ A + A S+ DC + L + ++ F +
Sbjct: 63 WSLVRPLSEITLLDIYTALGQPALFAIGMRSNNTDCLVERNVNAALKDTMAQSEALFLER 122
Query: 122 LTQYSIECLV 131
++E L+
Sbjct: 123 FGAITLESLL 132
>gi|325687289|gb|EGD29311.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK72]
Length = 160
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 11 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 69
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 70 GTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 127
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S+ +V
Sbjct: 128 AIQAAMEAELAQTSLNEVVA 147
>gi|226311119|ref|YP_002771013.1| hypothetical protein BBR47_15320 [Brevibacillus brevis NBRC 100599]
gi|226094067|dbj|BAH42509.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
Length = 145
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 51/134 (38%), Gaps = 3/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L A ++ IA+ C + + KI+ L K V+T G G
Sbjct: 1 MNSEFTIAVHSLALLAHIPEHMASSELIAKNVCTNPARIRKIMSILRKNEFVKTKEGIGG 60
Query: 63 GVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G L +++T+ ++ ++ + C + C + + + + +A F
Sbjct: 61 GYILACDPNEVTLAEIYRSISNGTLKPHWCSGDPQEACQVSANMHGVMDQIFTEAEMYFT 120
Query: 120 DVLTQYSIECLVRN 133
L Q +I+ ++
Sbjct: 121 KYLEQITIQTVLDK 134
>gi|284036641|ref|YP_003386571.1| BadM/Rrf2 family transcriptional regulator [Spirosoma linguale DSM
74]
gi|283815934|gb|ADB37772.1| transcriptional regulator, BadM/Rrf2 family [Spirosoma linguale DSM
74]
Length = 135
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 7 TDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ I +L A N +A + I+ + + K L L G+V + G+ GG
Sbjct: 3 GRFAISMHILTLLAKANGEWLPSDLLAGSININPVLVRKELINLRNKGLVVSREGKYGGS 62
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVL 122
L + A QI + DV AT + F+ +CP+ + ++A A L
Sbjct: 63 MLAKSAAQIRVSDVFLATRQGAFLGTSRNDPNPNCPVGKQINQHLDGLYQEAEEALLHKL 122
Query: 123 TQYSIECLVRN 133
++ R
Sbjct: 123 GDTTLADFSRR 133
>gi|306819699|ref|ZP_07453360.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304552265|gb|EFM40195.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 146
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 65/148 (43%), Gaps = 13/148 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + +DY +A + + + + KIL L AG++ TV
Sbjct: 1 MQISSRFTVALHIFTCVDTFKDDYKITSDFLAGSINTNPVIIRKILTQLKNAGLI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
GG+ R +I+ DV +A E E+ + S +CP+ + + ++L
Sbjct: 60 GTGGITPTRDLKEISFYDVYQAIEPVENGDLFNFHNSPNPNCPVGRN--IHALLDDKLKA 117
Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIF 141
A D + +YSI+ L RS ++++
Sbjct: 118 IQVAMEDEMKKYSIDDL---RSGMQELL 142
>gi|46201015|ref|ZP_00207932.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 141
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 30/124 (24%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + A + IA + + + + ++L L KAG+V + RG GG L
Sbjct: 10 AVHIASLLASMDGKACTSEWIAGSVNTNPVVVRRLLSALAKAGLVHSTRGSAGGSVLALG 69
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
++I++LD+ +A +E A DCP+ + L V+ +A A VL+ +
Sbjct: 70 PERISLLDIHRAVDEEEEPALHNQPPNPDCPVGRNIQSVLVRVIERADAARDGVLSATLL 129
Query: 128 ECLV 131
+V
Sbjct: 130 SDVV 133
>gi|322383829|ref|ZP_08057576.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321151645|gb|EFX44718.1| hypothetical protein PL1_3395 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 132
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ +L A++++ +A + + + + +I+ L KAG+V+ G GG L +
Sbjct: 1 MHILSLLAMNDNSLCTSEWVAGSVNTNPVVIRRIMGQLKKAGLVQVRSG-TGGAYLLKSL 59
Query: 71 DQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
D+IT+LD+ KA + E + + +CP+ + L VL +A A VL +
Sbjct: 60 DEITLLDIYKAVDVVEEGELFQMHEDPNPNCPVGANIQSVLMLVLGRAQEAMEQVLKDIT 119
Query: 127 IECLV 131
++ LV
Sbjct: 120 MDELV 124
>gi|312196443|ref|YP_004016504.1| BadM/Rrf2 family transcriptional regulator [Frankia sp. EuI1c]
gi|311227779|gb|ADP80634.1| transcriptional regulator, BadM/Rrf2 family [Frankia sp. EuI1c]
Length = 159
Score = 73.8 bits (180), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/138 (25%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ + + + + P +++AE +S +L K LQ L +A +V++V+G+
Sbjct: 1 MRLSGGVETALHCCVVLTAAAE-PVPAARLAELHGVSATYLAKQLQALSRARLVQSVQGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKA 114
GG L RP ++I +LDVV+A + + C C + + A
Sbjct: 60 AGGYVLTRPPEEIKVLDVVEAVDGAAPTFVCTEIRQRGPLAAPPEACAAPCAIKRTMIAA 119
Query: 115 LNAFFDVLTQYSIECLVR 132
A+ VL + S+ L R
Sbjct: 120 DQAWRAVLREVSVADLAR 137
>gi|328883585|emb|CCA56824.1| Predicted transcriptional regulator of 4-carboxymuconolactone
decarboxylase, Rrf2 family [Streptomyces venezuelae ATCC
10712]
Length = 157
Score = 73.4 bits (179), Expect = 8e-12, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 8/144 (5%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ ++ + + A I + +++A + +L K LQ L +AGIV +V G +
Sbjct: 1 MSDGVEWALHSCLNLAWIGSGQAVTAARLAAYHELPPAYLNKQLQALARAGIVTSVSGPK 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRKAL 115
GG RL R D+IT++DVV A E C C + + +A
Sbjct: 61 GGFRLARALDRITLMDVVAAIEGPDEAFRCTEIRQQGPGAAAPESYAAECAIAGAMSRAE 120
Query: 116 NAFFDVLTQYSIECLVRNRSSIKK 139
A+ L +++ VR R+ ++
Sbjct: 121 LAWRRELMAQTLDD-VRARAELQA 143
>gi|254241655|ref|ZP_04934977.1| hypothetical protein PA2G_02359 [Pseudomonas aeruginosa 2192]
gi|126195033|gb|EAZ59096.1| hypothetical protein PA2G_02359 [Pseudomonas aeruginosa 2192]
Length = 147
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 49/122 (40%), Gaps = 3/122 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A D P +A+ + + + + + L +AGIV + RG GG R+
Sbjct: 11 LHALLHMAEQ-DGPVTSETLAQCLGTNPVVVRRTMGYLREAGIVTSDRGHAGGWRIHADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
+T+ + +A E A + +C + S L +A ++ ++
Sbjct: 70 GAVTLRQLHEALGEPAMFAIGNRNQTPECLVEQSVNAALEGTFAEAEALLLKRFSEITLA 129
Query: 129 CL 130
L
Sbjct: 130 DL 131
>gi|241666997|ref|YP_002985081.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
gi|240862454|gb|ACS60119.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 151
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + + + L + G V + +G
Sbjct: 6 RLSRM----LHVLIHMDKHQ-HSATSDMIAKMLNTNPVVVRRTMAGLREKGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L RP +IT+LDV +A E A A + +C + + L +++A
Sbjct: 61 GGWTLVRPLSEITLLDVYRAIGEPHLFAIGPADDQPECLVEQAVNVVLGDAMKEAEALLL 120
Query: 120 DVLTQYSIECLVRN 133
L +++ + +
Sbjct: 121 QRLDSVTLDKIAAD 134
>gi|320102385|ref|YP_004177976.1| BadM/Rrf2 family transcriptional regulator [Isosphaera pallida ATCC
43644]
gi|319749667|gb|ADV61427.1| transcriptional regulator, BadM/Rrf2 family [Isosphaera pallida
ATCC 43644]
Length = 137
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
D P + +IA I E +L +IL L AG+V++VRG GG RL RP ++T+ +V++A
Sbjct: 25 DEPIPLREIAAEDGIPERYLVQILLQLKGAGLVQSVRGSTGGYRLARPPHRLTLGEVIRA 84
Query: 82 TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
S L V R A + +L Q ++ LV S
Sbjct: 85 IGGSASPLPQPLGPGGR-------ALAQVWRAIEQAEWSILDQTTLAQLVPPEDS 132
>gi|299821160|ref|ZP_07053048.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
gi|299816825|gb|EFI84061.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
Length = 146
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + GI +L Y I D IA + + + +++ LVKAG++E+ G
Sbjct: 1 MKYSHKLSDGIHILAYMCICKDSDLSSKAIAASIESNPSLVRRMMAQLVKAGLIESRPGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PA++I++L++ +A E+ + + C + G+ L + +
Sbjct: 61 VAP-VLTKPAEEISLLEIYQAIEQDHRILHVDKNTNPRCIVGGNIQHTLNGIYDQLQANV 119
Query: 119 FDVLTQYSIECLVRN 133
+ + +++ +V +
Sbjct: 120 EQEMREVTLQTVVDD 134
>gi|88607096|ref|YP_505255.1| rrf2 family protein /cysteine desulfurase [Anaplasma
phagocytophilum HZ]
gi|88598159|gb|ABD43629.1| rrf2 family protein /cysteine desulfurase [Anaplasma
phagocytophilum HZ]
Length = 486
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
IA++ +SE +L +++ L G+V+ RG GG L D+IT+ ++ + + +
Sbjct: 2 IADSQSLSEGYLERVISHLKSRGLVKPTRGPGGGYSLGMSPDRITLDMLLDSVGDKVKMV 61
Query: 90 ECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNAG 144
C A C G C + +I + + +++K++ G
Sbjct: 62 RCDADGNTGCISSYAGKCNSHDLWESMEKYMMHYFANTTILDV--SNNTLKELGGGG 116
>gi|56963162|ref|YP_174890.1| transcriptional regulator [Bacillus clausii KSM-K16]
gi|56909402|dbj|BAD63929.1| transcriptional regulator [Bacillus clausii KSM-K16]
Length = 148
Score = 73.4 bits (179), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 2/127 (1%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
Y ++ L++ + ++IAE C ++L LVKAGIVE GR GG L R
Sbjct: 17 YALQSLVFMSGQQKSHCASNEIAEHVCSEATLTRRVLSRLVKAGIVEAREGREGGYALRR 76
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYS 126
+ I+ DV +A + + P T+V+ ++ VL +++
Sbjct: 77 KPEDISFADVYRAIQVVDPLYTGLLDTTTSGPFAQETREMFTTVINESEKQLIQVLERHT 136
Query: 127 IECLVRN 133
I L++
Sbjct: 137 IADLIKK 143
>gi|326316721|ref|YP_004234393.1| BadM/Rrf2 family transcriptional regulator [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323373557|gb|ADX45826.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax avenae
subsp. avenae ATCC 19860]
Length = 147
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A H + P +A+ + + + + L AGIV + +G GG R+
Sbjct: 11 LHALLHMAEH-EGPMTSDALAQCLGTHPVVVRRTMGYLRDAGIVTSDKGHGGGWRIHADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ + +A E A + +C + L +A ++ ++
Sbjct: 70 GTVTLRQLHEALGEPAMFAIGNRNESPECLVKQSVNAALEGTFAEAEALLLKRFSEITLA 129
Query: 129 CL 130
L
Sbjct: 130 DL 131
>gi|115525039|ref|YP_781950.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris BisA53]
gi|115518986|gb|ABJ06970.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris BisA53]
Length = 153
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 52/125 (41%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ I + P +A+A + + + +I+ L AG V + +G GG +
Sbjct: 11 LHVLLHM-IGLEQPTTSEHLAKAMMTNPVVVRRIMAGLRDAGFVRSEKGHGGGWTIACDP 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
IT+ D+ +A +A + C + + L R+ AF L ++
Sbjct: 70 AAITLADIYRAVGAPAILAMGHRTESPGCLVEQAVNHALDGAFREVETAFMAKLGDVTLA 129
Query: 129 CLVRN 133
L ++
Sbjct: 130 VLAKD 134
>gi|316935429|ref|YP_004110411.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris DX-1]
gi|315603143|gb|ADU45678.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris DX-1]
Length = 154
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG
Sbjct: 1 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRTLVRARLIESVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++T+LD++ A E + S L VLR
Sbjct: 61 GGGYRFAGNPKRVTLLDII-ALFEDTGL---DLQEAASDEHEESRALHKVLRDIDEIAMT 116
Query: 121 VLTQYSIECLVR 132
L SI L++
Sbjct: 117 TLRSVSITSLLK 128
>gi|239833885|ref|ZP_04682213.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum
intermedium LMG 3301]
gi|239821948|gb|EEQ93517.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum
intermedium LMG 3301]
Length = 167
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 55/125 (44%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A H P +A+A + + + +++ L + G V + +G GG +
Sbjct: 24 LHVLLHMAEHRG-PVTSEVLAKAMTTNPVVVRRVMGGLREQGYVRSEKGHGGGWEIACDL 82
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+++T+ D+ +A E +A + K +C + + L A N + + ++
Sbjct: 83 NKVTLRDIYEAIGEPTLLAMGNRAEKPECLVEQAVNASLGKAFSDAENLLLERFGEVTLA 142
Query: 129 CLVRN 133
L +
Sbjct: 143 MLSAD 147
>gi|257459683|ref|ZP_05624792.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
gracilis RM3268]
gi|257443108|gb|EEV18242.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter
gracilis RM3268]
Length = 137
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG+ ++ A ++ P I +IAE +S+ +L +IL L +V +++G+
Sbjct: 4 LSTKGVYGLAAILQIAKASEVAPISIKEIAERTGVSKNYLEQILNTLRNEKLVCSIKGKN 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVA 89
GG L R A +I+ ++ A E+ +
Sbjct: 64 GGYHLARDASEISFGEIFTALEKDLRMT 91
>gi|15893411|ref|NP_346760.1| hypothetical protein CA_C0115 [Clostridium acetobutylicum ATCC 824]
gi|15022941|gb|AAK78100.1|AE007524_5 Uncharacterized protein, Yje/RRF2 family [Clostridium
acetobutylicum ATCC 824]
gi|325507523|gb|ADZ19159.1| Conserved hypothetical protein [Clostridium acetobutylicum EA 2018]
Length = 137
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ DY +RV++Y + + + IAE + FL K+L+ L+K+GIV++ RG
Sbjct: 1 MRITQEADYSMRVVLYLSKLGYEQKIDAATIAEHEKLPLRFLLKLLRKLIKSGIVKSYRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
+GG L + I + +V++A + V C C G C + + L +
Sbjct: 61 VKGGYALNKYPKDINLREVIEAIDGPICVNRCLTDSSY-CNAKRTGICEIHNALSLVRSD 119
Query: 118 FFDVLTQYSIECL 130
L + + E L
Sbjct: 120 LIKNLEKINFEDL 132
>gi|170697290|ref|ZP_02888384.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
gi|170137910|gb|EDT06144.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
IOP40-10]
Length = 146
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA C + + + ++L L +G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A
Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 121 ARFDEVTLGMLSRD 134
>gi|262068100|ref|ZP_06027712.1| transcriptional regulator family protein [Fusobacterium
periodonticum ATCC 33693]
gi|291378186|gb|EFE85704.1| transcriptional regulator family protein [Fusobacterium
periodonticum ATCC 33693]
Length = 141
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SC-GLTSVLRKALNA 117
GG +L + IT+ D V+ E+ + C + SC + S L + N
Sbjct: 61 ANGGYKLNKDPKDITLRDAVETIEDEIII------KDRSCVVGQTSCSVIFSALEEVENN 114
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
F + L + + + L +K
Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135
>gi|300866831|ref|ZP_07111509.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
gi|300335181|emb|CBN56669.1| conserved hypothetical protein [Oscillatoria sp. PCC 6506]
Length = 146
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ P +I IA I + +L ++L L + G++ + RG +GG L R +IT+L+++
Sbjct: 23 NEGEPLQIRSIASQQNIPDRYLEQLLATLRRGGVIRSQRGAKGGYLLAREPWKITLLEIL 82
Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
E + + ++ L + + V ++A VL +Y+++ L ++ ++
Sbjct: 83 NCLEGAD--MDRSENNSTTKTLESA-VVFEVWQEAREIANSVLQKYTLQDLTERLNARRQ 139
Query: 140 I 140
+
Sbjct: 140 L 140
>gi|257899894|ref|ZP_05679547.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|257837806|gb|EEV62880.1| conserved hypothetical protein [Enterococcus faecium Com15]
Length = 155
Score = 73.4 bits (179), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I VL Y + D IA + + + KI+ L K+G++ T G
Sbjct: 1 MKYSLQFSDAIHVLAYIEMFQDTRLLSSEMIANSIETNAANVRKIMSQLKKSGLILTKTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ L + DQI++LDV ++ E + + + +C + + L +
Sbjct: 61 KPQPS-LAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQKK 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+ + + +++ L+ + ++K
Sbjct: 120 AEEEMAKITLDSLIHKIAVLEK 141
>gi|227552744|ref|ZP_03982793.1| transcriptional regulator [Enterococcus faecium TX1330]
gi|257897331|ref|ZP_05676984.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|293378906|ref|ZP_06625061.1| transcriptional regulator [Enterococcus faecium PC4.1]
gi|293572813|ref|ZP_06683767.1| transcription regulator [Enterococcus faecium E980]
gi|227178144|gb|EEI59116.1| transcriptional regulator [Enterococcus faecium TX1330]
gi|257833896|gb|EEV60317.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|291607163|gb|EFF36531.1| transcription regulator [Enterococcus faecium E980]
gi|292642447|gb|EFF60602.1| transcriptional regulator [Enterococcus faecium PC4.1]
Length = 155
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I VL Y + D IA + + + KI+ L K+G++ T G
Sbjct: 1 MKYSLQFSDAIHVLAYIEMFQDTRLLSSEMIASSIETNAANVRKIMSQLKKSGLILTKTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ L + DQI++LDV ++ E + + + +C + + L +
Sbjct: 61 KPQPS-LAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQKK 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+ + + +++ L+ + ++K
Sbjct: 120 AEEEMAKITLDSLIHKIAVLEK 141
>gi|270290058|ref|ZP_06196284.1| transcription regulator [Pediococcus acidilactici 7_4]
gi|270281595|gb|EFA27427.1| transcription regulator [Pediococcus acidilactici 7_4]
Length = 168
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R I VL Y A +H+ P IA + + + +I+ L KAG+++T G
Sbjct: 11 MKYSMRFSDTIHVLAYIAILHDTAPLTSQAIAASVETNPSNIRRIMASLKKAGLIKTTVG 70
Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
+ L R +QI++LD+ + +E + + DC + G+ L +
Sbjct: 71 KPQPA-LTRAPEQISLLDIFNSLDEADTNLIQVDPKTNPDCVVGGNIQDALNAQYAHFQK 129
Query: 117 AFFDVLTQYSIECLVRN 133
D + + ++ ++++
Sbjct: 130 VVQDEMAKTTLADVIQD 146
>gi|256026588|ref|ZP_05440422.1| hypothetical protein PrD11_01075 [Fusobacterium sp. D11]
gi|260494648|ref|ZP_05814778.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289764592|ref|ZP_06523970.1| transcriptional regulator [Fusobacterium sp. D11]
gi|260197810|gb|EEW95327.1| conserved hypothetical protein [Fusobacterium sp. 3_1_33]
gi|289716147|gb|EFD80159.1| transcriptional regulator [Fusobacterium sp. D11]
Length = 141
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + D S+IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
GG +L R IT+ D V+ E+ + + C A + C + + L K N
Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVAG-QTSCSI-----IFEALEKVENN 114
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
F L + + + L +K
Sbjct: 115 FLKNLEKVNFQELTCPHVPLK 135
>gi|39933740|ref|NP_946016.1| putative transcriptional regulator BadM [Rhodopseudomonas palustris
CGA009]
gi|6136594|sp|O07465|BADM_RHOPA RecName: Full=Putative HTH-type transcriptional regulator BadM
gi|2190585|gb|AAC13361.1| unknown [Rhodopseudomonas palustris]
gi|39647587|emb|CAE26107.1| putative transcriptional regulator, badM [Rhodopseudomonas
palustris CGA009]
Length = 156
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG
Sbjct: 3 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++T+LD++ A E + S L VLR
Sbjct: 63 GGGYRFAGNPKRVTLLDII-ALFEDTGL---DLQEAASDDHEESRALHKVLRDIDEIAMT 118
Query: 121 VLTQYSIECLVR 132
L SI L++
Sbjct: 119 TLRSVSITSLLK 130
>gi|226226357|ref|YP_002760463.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
gi|226089548|dbj|BAH37993.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
Length = 170
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A H + P+ +A A + + + +++ L G V + +G GG +
Sbjct: 11 LHVLLHMAEH-EGPSTSESLARAMDTNPVVVRRVMAGLRDRGFVRSEKGPGGGWTIACDL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
++T+ DV +A E +A S C + + L +A + ++
Sbjct: 70 RRVTLRDVYEALGEPRLLAIGNRSEAPQCLVEQAVNATLGDAFAEAEALLLQRFGEVTLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|254249066|ref|ZP_04942386.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184]
gi|124875567|gb|EAY65557.1| hypothetical protein BCPG_03924 [Burkholderia cenocepacia PC184]
Length = 146
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA C + + + ++L L G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A +
Sbjct: 61 GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 121 ARFGEVTLGMLSRD 134
>gi|76819017|ref|YP_337666.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
gi|76583490|gb|ABA52964.1| putative DNA-binding protein [Burkholderia pseudomallei 1710b]
Length = 571
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 424 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 478
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + + L +A
Sbjct: 479 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMREALGEAQALLL 538
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 539 ARFGAITVGDLARD 552
>gi|301299314|ref|ZP_07205599.1| transcriptional regulator [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300853054|gb|EFK80653.1| transcriptional regulator [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 153
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ + ++IA + + + ++ L KAG++ G
Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNDDLSSARIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
L +PA +I++LDV +A + + +C + + L V ++ NA
Sbjct: 61 -ARASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQNRLEEVYQRVQNAA 119
Query: 119 FDVLTQYSIECLVR 132
++Q SI+ ++
Sbjct: 120 ELEMSQISIQDVID 133
>gi|258541842|ref|YP_003187275.1| BadM/Rrf2 family transcriptional regulator [Acetobacter
pasteurianus IFO 3283-01]
gi|256632920|dbj|BAH98895.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-01]
gi|256635977|dbj|BAI01946.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-03]
gi|256639032|dbj|BAI04994.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-07]
gi|256642086|dbj|BAI08041.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-22]
gi|256645141|dbj|BAI11089.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-26]
gi|256648196|dbj|BAI14137.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-32]
gi|256651249|dbj|BAI17183.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-01-42C]
gi|256654240|dbj|BAI20167.1| transcriptional regulator BadM/Rrf2 [Acetobacter pasteurianus IFO
3283-12]
Length = 149
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 60/129 (46%), Gaps = 7/129 (5%)
Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ +++ A H + IAE ++ + +LQ L ++G++E++RG RGG RL
Sbjct: 11 AVLIMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
RP I+++D+++A + A + ++ C K +++ ++
Sbjct: 71 RPRRDISLVDIIEAVLNTDADANDGPQGALFQKVLAPC-----WDKFDQKLITQMSKTTL 125
Query: 128 ECLVRNRSS 136
+ LV+ S
Sbjct: 126 DDLVKQAES 134
>gi|153010905|ref|YP_001372119.1| BadM/Rrf2 family transcriptional regulator [Ochrobactrum anthropi
ATCC 49188]
gi|151562793|gb|ABS16290.1| transcriptional regulator, BadM/Rrf2 family [Ochrobactrum anthropi
ATCC 49188]
Length = 154
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A H P +A+A + + + +++ L + G V + +G GG +
Sbjct: 11 LHVLLHMAEHKG-PVTSEVLAKAMTTNPVVVRRVMGGLREQGYVRSEKGHGGGWEIACDL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+++T+ D+ +A E +A + C + + L+ A N + + ++
Sbjct: 70 NKVTLRDIYEAIGEPALLAMGNRTEMPGCLVEQAVNASLSKAFTDAENLLLERFGEVTLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 MLSAD 134
>gi|126734658|ref|ZP_01750404.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. CCS2]
gi|126715213|gb|EBA12078.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. CCS2]
Length = 125
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/125 (26%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A+ D P IA+ + + KI+ L +AGI + G +GG L R +QIT+L
Sbjct: 1 MAVKGDVPIGSEDIAKRASTNAAVVRKIISMLGRAGITTSQPGAKGGTHLARSPEQITLL 60
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----ALNAFFDVLTQYSIECLVR 132
DV +A + A CP+ + VL + A A L SI +
Sbjct: 61 DVYRAVDTQEIFANPNCPPDASCPIGS--RIGPVLDEIKANATQAMEAELAAVSIAGIAG 118
Query: 133 NRSSI 137
+
Sbjct: 119 KLKPL 123
>gi|237744867|ref|ZP_04575348.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
gi|229432096|gb|EEO42308.1| conserved hypothetical protein [Fusobacterium sp. 7_1]
Length = 141
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/141 (26%), Positives = 64/141 (45%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + D S+IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDKIVTSSEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
GG +L R IT+ D V+ E+ + + C A + C + + L K N
Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCVAG-QTSCSI-----IFEALEKVENN 114
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
F L + + + L +K
Sbjct: 115 FLKNLEKVNFQELTCPHVPLK 135
>gi|257888713|ref|ZP_05668366.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257824767|gb|EEV51699.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
Length = 155
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I VL Y + D IA + + + KI+ L K+G++ T G
Sbjct: 1 MKYSLQFSDAIHVLAYIEMFQDTQLLSSEMIASSIETNAANVRKIMSQLKKSGLILTKTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ L + DQI++LDV ++ E + + + +C + + L +
Sbjct: 61 KPQPS-LAKRPDQISLLDVYRSIEGNTQLIQVDPKTNPNCVVGANIQEALEESYARLQKK 119
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
+ + + +++ L+ + ++K
Sbjct: 120 AEEEMAKITLDSLIHKIAVLEK 141
>gi|295690375|ref|YP_003594068.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
21756]
gi|295432278|gb|ADG11450.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
ATCC 21756]
Length = 139
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 4/129 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ +D + VL++ A D P +A++ + + + L +AG V + +G GG
Sbjct: 5 TRLSDV-LHVLLHMA-QVDQPLTSEVLAKSMGTNPAVFRRTMAGLREAGYVRSGKGHGGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDV 121
RL RP DQIT+L + +A A + S DC + + L+ + +A F +
Sbjct: 63 WRLGRPLDQITLLAIYEALNRPRLFAIGYRSDHPDCLIEQNVNAALSETMAQAEALFIER 122
Query: 122 LTQYSIECL 130
Q +++ L
Sbjct: 123 FGQVTLDQL 131
>gi|297561597|ref|YP_003680571.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Nocardiopsis dassonvillei subsp. dassonvillei DSM
43111]
gi|296846045|gb|ADH68065.1| transcriptional regulator, BadM/Rrf2 family [Nocardiopsis
dassonvillei subsp. dassonvillei DSM 43111]
Length = 150
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/145 (22%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 4 TKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
R L + ++ QIA + + + + ++L L KAG+ ++ RG
Sbjct: 11 NSRLTIAAHALTWIGLYQRRGHEVATSEQIATSVNTNPVVIRRLLAKLNKAGLADSRRGA 70
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
G L R IT+LDV +A E A A+ +C + +T+V A
Sbjct: 71 GAGWMLARDLAAITLLDVYQAIEPGPVFALHRATPDPECVVGHGIGPAMTAVYDGVEAAL 130
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
L + ++E ++R+ + NA
Sbjct: 131 RGELAKTTLEDVLRD------VLNA 149
>gi|332830471|gb|EGK03099.1| hypothetical protein HMPREF9455_01349 [Dysgonomonas gadei ATCC
BAA-286]
Length = 136
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 2/127 (1%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
++ + +L+ A D +A + I+ + + K L L + GIV + G+ GG
Sbjct: 4 RKFSISMHILVLLATSLDEWISSDYLAGSMNINPVLVRKELSNLRRHGIVVSKEGKNGGS 63
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
L +PAD+I + D+ + + AS CP+ L + +A + L
Sbjct: 64 MLAKPADKILLSDIYRIVSSQTALGNSLASPNPKCPVGKQINEHLHDLNMEAEDFIIAKL 123
Query: 123 TQYSIEC 129
+ ++
Sbjct: 124 SDQTLAD 130
>gi|167587582|ref|ZP_02379970.1| transcriptional regulator, BadM/Rrf2 family protein [Burkholderia
ubonensis Bu]
Length = 151
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL ++ P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSMQEGVPLSSDIIAGSVNTNPALIRRLLSMLAAAGLTTSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R IT+LDV +A +++ A + C + LT + A A
Sbjct: 61 GGGALLAREPGSITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLATRTLTDVTAD 135
>gi|327490256|gb|EGF22044.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK1058]
Length = 149
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R +L+ A+ +A + ++ + + K L L AG++ TV
Sbjct: 1 MQISSRFTIATHMLIVLALEGKKQKLTSDILAGSVGVNPVIIRKTLSQLKNAGMI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSVLRK--- 113
GG + + I++LDV A E +S + DCP+ + + +VL
Sbjct: 60 GTGGAEIAKDLKGISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNVLDDRLA 117
Query: 114 -ALNAFFDVLTQYSIECLVR 132
A L Q S++ +V
Sbjct: 118 AIQAAMESELAQTSLDEVVA 137
>gi|126651648|ref|ZP_01723851.1| hypothetical protein BB14905_13585 [Bacillus sp. B14905]
gi|126591597|gb|EAZ85703.1| hypothetical protein BB14905_13585 [Bacillus sp. B14905]
Length = 134
Score = 73.0 bits (178), Expect = 1e-11, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 48/129 (37%), Gaps = 5/129 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I VL + D +IA + + + + +I L KAGI+ + G G L R
Sbjct: 9 AIHVLSLIST--DSTLSSEKIASSVNTNPVVIRRISSDLKKAGILTSKVGVP-GSSLTRD 65
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
IT+ D+ KA + + DC + L A + L ++
Sbjct: 66 PSDITLFDIYKAVHLEKELFPIHNNPNPDCHVGKKIQHTLNVTFESVQTAMENELKNKTL 125
Query: 128 ECLVRNRSS 136
E ++ + +
Sbjct: 126 ESVMNHLNE 134
>gi|117164516|emb|CAJ88062.1| putative transcriptional regulator [Streptomyces ambofaciens ATCC
23877]
Length = 150
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + ++ QIA + + + + ++L L KAG+VE+
Sbjct: 1 MSANSRLTIAAHALAWIGLYQRRGHEVATSEQIATSANTNPVVIRRLLGELRKAGLVESR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RG G L R + +T+LDV +A E A + +C + + ++
Sbjct: 61 RGVGAGWSLARELESMTLLDVYEAVEPGPLFAMHRTTPDQECVVGHGIQPAMQNIYEGIE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
D L + ++ ++R+
Sbjct: 121 KTLRDELARVTLANVLRD 138
>gi|315925641|ref|ZP_07921851.1| transcriptional regulator superfamily protein [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315621182|gb|EFV01153.1| transcriptional regulator superfamily protein [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 152
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T++TDY IR+L A + +I +AE + F +KI + L +AGIV RG
Sbjct: 1 MLITRKTDYAIRLLRGIA--DGGKKKIPVLAENEQVPRPFAYKITKKLQQAGIVAVGRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDC-PLVGSCGLTSVLRKALNA 117
GG L RP T+LD+++A ++ V C + H C +C + +
Sbjct: 59 AGGTSLNRPLAAFTLLDLLRALDDYPTVTACTRAPYHCDWCEHHRMACCAHQHMSQIQRR 118
Query: 118 FFDVLTQYSIECLV 131
L ++++ ++
Sbjct: 119 LEAELAAHTLQAVI 132
>gi|223040323|ref|ZP_03610599.1| RRF2 family protein [Campylobacter rectus RM3267]
gi|222878392|gb|EEF13497.1| RRF2 family protein [Campylobacter rectus RM3267]
Length = 138
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 56/136 (41%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + ++ I +L+ C D N +A + + + I++ L A ++ G
Sbjct: 1 MQIGQKFSIAIHILLSCEFFKDEKNTSEFLAGTVGTNPVIVRNIIRLLKSANLINVSAG- 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFF-VAECFASHKIDCPLVGSC--GLTSVLRKALNA 117
GG L + DQIT+ D+ A E + + + CPL G LT A A
Sbjct: 60 TGGASLAKKPDQITLFDIFSAVNEGENGIFKIHKNSPPPCPLGGRIEALLTPKFASAQRA 119
Query: 118 FFDVLTQYSIECLVRN 133
FD L +++ L+
Sbjct: 120 MFDSLAGVNLQNLLDE 135
>gi|302532311|ref|ZP_07284653.1| rrf2 family protein [Streptomyces sp. C]
gi|302441206|gb|EFL13022.1| rrf2 family protein [Streptomyces sp. C]
Length = 144
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 48/128 (37%), Gaps = 6/128 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M + R L + A QIA + + + + + L L AG+VE+
Sbjct: 1 MSASSRMTVATHTLTWMARVCPRRPGGIVTSEQIAASVNTNPVVIRRTLGSLRDAGLVES 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
RG+ G RL R + IT+ DV A E + + CP+ L V +A
Sbjct: 61 RRGQGAGWRLARTPESITLRDVHLAVEPEPLIPLHSSPPNRKCPVAQGIPAVLREVYDRA 120
Query: 115 LNAFFDVL 122
A L
Sbjct: 121 EEAMKAEL 128
>gi|90420066|ref|ZP_01227974.1| possible transcriptional regulator [Aurantimonas manganoxydans
SI85-9A1]
gi|90335400|gb|EAS49150.1| possible transcriptional regulator [Aurantimonas manganoxydans
SI85-9A1]
Length = 155
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A D P Q+A+A + + + +I+ L G+V + +G GG + +
Sbjct: 11 LHVLLHMA-ETDGPVTSEQLAKAMQTNPVVIRRIMAGLRNQGLVRSTKGHGGGWTIAKEL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ +A F A + C + + + +A + L + ++
Sbjct: 70 STVTLRDIYEALGSPEFFAMGNRTEAPGCLVEEAVNAAMDDTFARAEALLLERLGEVTLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|148555080|ref|YP_001262662.1| BadM/Rrf2 family transcriptional regulator [Sphingomonas wittichii
RW1]
gi|148500270|gb|ABQ68524.1| transcriptional regulator, BadM/Rrf2 family [Sphingomonas wittichii
RW1]
Length = 152
Score = 72.6 bits (177), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A D P +A+A + + +++ L + G+V + +G GG + RP
Sbjct: 11 LHVLLHMAEQ-DGPVTSEVLAKAMDTHPVVVRRVMAGLREQGLVRSEKGHGGGWTIARPL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
D IT+ D+ A +A + C + + L A + ++
Sbjct: 70 DGITLRDIYGALGGPSLLAMGHRTEAPGCLVEQAVNAALGRAFHDAEALLLARFGEVTLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 MLSAD 134
>gi|220908247|ref|YP_002483558.1| BadM/Rrf2 family transcriptional regulator [Cyanothece sp. PCC
7425]
gi|219864858|gb|ACL45197.1| transcriptional regulator, BadM/Rrf2 family [Cyanothece sp. PCC
7425]
Length = 147
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 3/117 (2%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
P + + IA I+ +L +IL L +AGIV + RG GG L R +IT+ DV
Sbjct: 27 QPLKANAIAARQEIASRYLEQILSMLRQAGIVASYRGAAGGYTLARDPSEITVWDVFSCL 86
Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
E + + L + +++ A +VL Q +++ L+ R K+
Sbjct: 87 EGETINKQPAPDGPPNLTKE---ILQEIWQQSTTAAQNVLQQITLQDLLIRRKEYKQ 140
>gi|167772123|ref|ZP_02444176.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM
17241]
gi|167665921|gb|EDS10051.1| hypothetical protein ANACOL_03497 [Anaerotruncus colihominis DSM
17241]
Length = 130
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 3/131 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M++T DY +R++ A H ++ A ++ F KIL+ LV GIV + +G
Sbjct: 1 MYITLEADYAVRIVDCLAQHQ-MRMDAKSLSAATGVTLRFALKILRKLVAEGIVRSYKGT 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
+GG L RPA +I + +V++ E ++ C C V C +
Sbjct: 60 QGGYELARPAGEIALGEVIEIVEGPIVISRCVGDDTFQCSRVEKCACRFNKTYTEIAQLV 119
Query: 119 FDVLTQYSIEC 129
+ L + E
Sbjct: 120 REHLYAVNFEQ 130
>gi|55670826|pdb|1XD7|A Chain A, Crsytal Structure Of A Putative Dna Binding Protein
Length = 145
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L ++ D IA++ + + + +++ L KA I+ + G
Sbjct: 4 INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVP- 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + I++L+V +A ++ + + CP+ L A +
Sbjct: 61 GASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGKKIQNALDETFESVQRAMEN 120
Query: 121 VLTQYSIECLVRN 133
L S++ ++ +
Sbjct: 121 ELASKSLKDVMNH 133
>gi|192289160|ref|YP_001989765.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris TIE-1]
gi|192282909|gb|ACE99289.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris TIE-1]
Length = 156
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 38/132 (28%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T G+ ++ A + D IA+ IS L K+L+ LV+A ++E+VRG
Sbjct: 3 MRLQKSTMCGLYAVLELAANPDRQVSAGDIADKYDISLNHLAKVLRALVRARLIESVRGP 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++T+LD++ A E + S L VLR
Sbjct: 63 GGGYRFAGNPKRVTLLDII-ALFEDTGL---DLQEAASDDHEESRALHKVLRDIDEIAMT 118
Query: 121 VLTQYSIECLVR 132
L SI L++
Sbjct: 119 TLRSVSITSLLK 130
>gi|114798919|ref|YP_761419.1| hypothetical protein HNE_2740 [Hyphomonas neptunium ATCC 15444]
gi|114739093|gb|ABI77218.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
Length = 147
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ +++ A D P ++A + + + + + L +AG V + RG GG R+
Sbjct: 11 LHAILHMAEQ-DRPMTSDELAVCMRTNPVVVRRTMGLLREAGFVSSERGHSGGWRIKADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
++T+ + +A E A +C + S L S +A + ++
Sbjct: 70 ARLTLRQLHEALGEPTVFAIGNRHETPECLVEQSVNSVLDSAFAEAEALLLERFASVTLA 129
Query: 129 CLVRN 133
L
Sbjct: 130 DLAAE 134
>gi|209546345|ref|YP_002278235.1| BadM/Rrf2 family transcriptional regulator [Rhizobium leguminosarum
bv. trifolii WSM2304]
gi|209539202|gb|ACI59135.1| transcriptional regulator, BadM/Rrf2 family [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 151
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + + + L + G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHQ-HSATSEMIAKMLNTNPVVVRRTMAGLRERGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L RP +IT+LDV A E A A + C + + L +++A
Sbjct: 61 GGWTLVRPLWEITLLDVYNALGEPHLFAIGPADDQPKCLVEQAVNSVLQDAMKEAEALLL 120
Query: 120 DVLTQYSIECLVRN 133
L ++E + +
Sbjct: 121 RRLGGVTLEEIAAD 134
>gi|19704428|ref|NP_603990.1| hypothetical protein FN1093 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19714688|gb|AAL95289.1| Hypothetical protein FN1093 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 142
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + + ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SC-GLTSVLRKALNA 117
GG +L + IT+ D V+ E+ + C + SC + L K N
Sbjct: 61 ANGGYKLNKEPKDITLRDAVETIEDEIII------KDKSCVVGQTSCSIIFEALEKVENN 114
Query: 118 FFDVLTQYSIECL 130
F + L + + + L
Sbjct: 115 FLNNLEKVNFQEL 127
>gi|329768830|ref|ZP_08260259.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325]
gi|328838223|gb|EGF87836.1| hypothetical protein HMPREF0433_00023 [Gemella sanguinis M325]
Length = 167
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 58/141 (41%), Gaps = 10/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G
Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHIYLNSKEISKRLNISPTYLKKIMRKLVVHNLVKANTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV-------AECFASHKIDCPLVGSCGLTSVLR 112
GG + R +T+ DV A V + S L V
Sbjct: 61 VGGGYKY-RSNKTVTLYDVYVALNGEVEVFVLKTDYVSKIFEGALAVDKRYSEYLRKV-N 118
Query: 113 KALNAFFDVLTQYSIECLVRN 133
++ + L Q +IE +V +
Sbjct: 119 TINHSIKEALEQITIEEIVED 139
>gi|149370370|ref|ZP_01890059.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified
eubacterium SCB49]
gi|149355921|gb|EDM44478.1| transcriptional regulator, BadM/Rrf2 family protein [unidentified
eubacterium SCB49]
Length = 144
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K YGI+ +Y A + + +IAEA F K+LQ L KA I+ +G
Sbjct: 2 FSKTCRYGIKATIYIAQQSQEGKRASLKEIAEAIDSPVAFTAKVLQFLSKAAIINATKGF 61
Query: 61 RGGVRLCRP-ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG + + ++IT+ +VKA + EC I C C +
Sbjct: 62 NGGYSIEKELLEKITLKQIVKAIDGDQLFEECALGLSI-CNANEPCPMHDQFVNIRAQLN 120
Query: 120 DVLTQYSIECLVRN 133
+ L ++ +V+
Sbjct: 121 NTLAASNLLSVVKE 134
>gi|228475630|ref|ZP_04060348.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis
SK119]
gi|228270412|gb|EEK11847.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus hominis
SK119]
Length = 160
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/148 (19%), Positives = 59/148 (39%), Gaps = 9/148 (6%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + I VL+ + + +++ +S+ +L KI++ LVK +V + G
Sbjct: 1 MKLSTGWEQAIYVLLILNQLPRQSVMTSTALSKRLKVSDSYLKKIVKALVKENLVYSTTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKA 114
+ GG L + IT DV A E + + + C ++ L
Sbjct: 61 KNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNISIALNHI 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
+ L+ +++ + I K++N
Sbjct: 121 EHTLISTLSNINLDDI---YQDIIKLYN 145
>gi|300214658|gb|ADJ79074.1| Transcription regulator [Lactobacillus salivarius CECT 5713]
Length = 153
Score = 72.6 bits (177), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ + ++IA + + + ++ L KAG++ G
Sbjct: 1 MKHSYKLSDAIHILTYVDIYKNDDLSSTRIAASIEANASVVRNLMSKLKKAGLLNNQPGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L +PA +I++LDV +A + + +C + + L V ++ NA
Sbjct: 61 -ARASLAKPASEISVLDVYRAITSTASLLHVDPKTNPNCVVGANIQNTLEEVYQRVQNAA 119
Query: 119 FDVLTQYSIECLVR 132
++Q SI+ ++
Sbjct: 120 ELEMSQISIQDVID 133
>gi|296328218|ref|ZP_06870749.1| transcriptional regulator superfamily protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|296154730|gb|EFG95516.1| transcriptional regulator superfamily protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 142
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + + ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SC-GLTSVLRKALNA 117
GG +L + IT+ D V+ E+ + C + SC + L K N
Sbjct: 61 ANGGYKLNKEPKDITLRDAVETIEDEIII------KDKSCVVGQTSCSIIFEALEKVENN 114
Query: 118 FFDVLTQYSIECL 130
F + L + + + L
Sbjct: 115 FLNNLEKVNFQEL 127
>gi|60594413|pdb|1YLF|A Chain A, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus
Cereus, A Member Of The Rrf2 Family Of Putative
Transcription Regulators.
gi|60594414|pdb|1YLF|B Chain B, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus
Cereus, A Member Of The Rrf2 Family Of Putative
Transcription Regulators.
gi|60594415|pdb|1YLF|C Chain C, X-Ray Crystal Structure Of Bc1842 Protein From Bacillus
Cereus, A Member Of The Rrf2 Family Of Putative
Transcription Regulators
Length = 149
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 5/129 (3%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ R + +L + AE+ + + + KI L +AG V RG
Sbjct: 8 KISSRFSIAVHILSILKNNPSSLCTSDYXAESVNTNPVVIRKIXSYLKQAGFVYVNRGP- 66
Query: 62 GGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
GG L + +IT+LDV A E + DCP+ + L +L +A +A
Sbjct: 67 GGAGLLKDLHEITLLDVYHAVNVVEEDKLFHIHEQPNPDCPIGANIQAVLEIILIQAQSA 126
Query: 118 FFDVLTQYS 126
+VL +
Sbjct: 127 XEEVLRNIT 135
>gi|213612431|ref|ZP_03370257.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 87
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL +PA+ I I DVV+ E + C + C + +C L L KA+ +F
Sbjct: 8 NGGIRLGKPANTICIGDVVREL-EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLK 63
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
L Y++ LV + K+
Sbjct: 64 ELDNYTLADLVEENQPLYKLL 84
>gi|194289994|ref|YP_002005901.1| transcriptional regulator hth rrf2-type DNA-binding domain
[Cupriavidus taiwanensis LMG 19424]
gi|193223829|emb|CAQ69836.1| putative transcriptional regulator, HTH rrf2-type DNA-binding
domain [Cupriavidus taiwanensis LMG 19424]
Length = 144
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L +AG+V T G
Sbjct: 1 MSTSSRFAVAVHILTLLASSAE-PLPSSLIAGSVGTNPALIRRLVGQLAEAGLVATTMGS 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG L RPA IT+L+V + E + +A ++ C + L V +A A
Sbjct: 60 TGGATLARPAASITLLEVFRVVETTALIALHQSAPNPACLVGREITGALRKVADRAQAAM 119
Query: 119 FDVLTQYSIECLVRN 133
+ L +I ++ +
Sbjct: 120 DETLAGITIASMLAD 134
>gi|319779902|ref|YP_004139378.1| hypothetical protein Mesci_0155 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317165790|gb|ADV09328.1| protein of unknown function UPF0074 [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 149
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 3/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + +L++ A + Q+A + + + + + L AGIV + RG
Sbjct: 1 MKRNSRLSSTLHILVHMAEKPEQALTSEQLATFIHTNPVVVRRTIAGLRDAGIVTSSRGH 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG L R ++I++ ++ A E+ C + + L A
Sbjct: 61 GGGWLLGRVPEKISLAEISVALGETLLPFS-TEPESPGCLVEQAVIAVLDDFRIAAERLL 119
Query: 119 FDVLTQYSIECLVRNRSSIKKIFN 142
+ L++ ++ L + +
Sbjct: 120 AEKLSRITLADLTADFRRRFDLIG 143
>gi|254442216|ref|ZP_05055692.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
DG1235]
gi|198256524|gb|EDY80832.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
DG1235]
Length = 139
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 45/126 (35%), Gaps = 4/126 (3%)
Query: 10 GIRVLMYCAIHNDYPNR---ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
I L Y A D IA + + + K+L L +AG+V G +GG L
Sbjct: 11 AIMALCYLAEGFDNGVTRHTSRDIATNRNLPQPIVAKLLVLLSQAGLVLGTPGPKGGYWL 70
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
R IT+ D+V E C C C L L + D L + +
Sbjct: 71 ARDPQDITLYDIVSHFERDGERISC-PKGIGKCDESNPCALHQKLIDLDHQLVDFLHENT 129
Query: 127 IECLVR 132
+E V
Sbjct: 130 LEAFVE 135
>gi|312891725|ref|ZP_07751234.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
paludis DSM 18603]
gi|311295808|gb|EFQ72968.1| transcriptional regulator, BadM/Rrf2 family [Mucilaginibacter
paludis DSM 18603]
Length = 136
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 2/131 (1%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
R + +L A +A + I+ + + K L L K +V + G+ GG
Sbjct: 3 NSRFSISVHILTLLASAEGGIVTSDYLAGSININPVLVRKELINLRKHNLVGSKEGKNGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDV 121
L +PA +I + DV +A ++S + + + CP+ S+ A A
Sbjct: 63 AYLLKPATEIRLSDVYEAVKQSPLLGQAKNTPNPACPVGRQINQHLDSLHADAERALVKQ 122
Query: 122 LTQYSIECLVR 132
L +++ V
Sbjct: 123 LNTTTLQQFVN 133
>gi|113868325|ref|YP_726814.1| putative transcriptional regulator [Ralstonia eutropha H16]
gi|113527101|emb|CAJ93446.1| Putative Transcriptional regulator [Ralstonia eutropha H16]
Length = 136
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ +L A + P S IA + + + +++ L +AG+V T G GG L RP
Sbjct: 2 AVHILTLLASSAE-PVPSSLIAASVGTNPALIRRLVGQLAEAGLVATTMGSTGGATLARP 60
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
A IT+LDV + E + + ++ CP+ L V +A A D L +I
Sbjct: 61 AASITLLDVFRVVETTALITLHQSAPNPACPVGREITGALRKVADRAQAAMDDTLAGATI 120
Query: 128 ECLVRN 133
++ +
Sbjct: 121 ASMLAD 126
>gi|21232974|ref|NP_638891.1| hypothetical protein XCC3545 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|66766953|ref|YP_241715.1| hypothetical protein XC_0614 [Xanthomonas campestris pv. campestris
str. 8004]
gi|21114816|gb|AAM42815.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66572285|gb|AAY47695.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. 8004]
Length = 157
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A + P QIA + + + + + L +AG V++ +G
Sbjct: 6 RLSRM----LHVLLHMA-RSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHH 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG +L R Q+T+LDV +A A C + + + L A
Sbjct: 61 GGWQLARDLAQVTLLDVHRAVGGPHLFAIGTDQDHPQCGVERVVNAAIADALTAAETLLL 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L ++ L + ++ K
Sbjct: 121 ERLGTVTLADLASDFDALCK 140
>gi|324993812|gb|EGC25731.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK405]
gi|324994867|gb|EGC26780.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK678]
Length = 143
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 59/133 (44%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +A + + ++ K++ L AG++ + +G+ G
Sbjct: 3 TKFSVALHILTMIS-ESRETLSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGK-SGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++++L++ AT+E + + + +CP+ + ++ + A
Sbjct: 61 QLGKTPKKMSLLEIYYATQEVKRISLFQMHQNANQECPVGQNIQEAVSPIFASAEAQLEK 120
Query: 121 VLTQYSIECLVRN 133
L+ +++ ++ N
Sbjct: 121 ALSHQTLDDVINN 133
>gi|297191372|ref|ZP_06908770.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
25486]
gi|197720618|gb|EDY64526.1| transcriptional regulator [Streptomyces pristinaespiralis ATCC
25486]
Length = 160
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ ++ + + + P +++AE +S +L K LQ L +AG+V +V+G+
Sbjct: 1 MKMSGGVEWALHCCVVL-TSVEEPVPATRLAELHDVSASYLAKQLQALSRAGLVRSVQGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAEC--------FASHKIDCPLVGSCGLTSVLR 112
GG L R IT+LDVV+A + C A+ C C + +
Sbjct: 60 AGGYVLTREPASITVLDVVEAVDGPGQAFTCTEIRQRGPLATPAESC--TAPCAIARAMA 117
Query: 113 KALNAFFDVLTQYSIECLVR 132
A A+ L SI LV+
Sbjct: 118 GADAAWRAALRAVSIADLVQ 137
>gi|170736329|ref|YP_001777589.1| BadM/Rrf2 family transcriptional regulator [Burkholderia
cenocepacia MC0-3]
gi|169818517|gb|ACA93099.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia
cenocepacia MC0-3]
Length = 137
Score = 72.3 bits (176), Expect = 2e-11, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ D P IA C + + + ++L L G V++ +G GG L
Sbjct: 2 LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHGGGWALSVAL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
D IT+LDV +A E ++ + +C + + L++ L++A + + ++
Sbjct: 61 DDITLLDVYRAVGEPPLFSDLVPEDEPECLVEQAVNAHLSATLKEAEASLLARFGEVTLG 120
Query: 129 CLVRN 133
L R+
Sbjct: 121 MLSRD 125
>gi|282901029|ref|ZP_06308962.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
raciborskii CS-505]
gi|281194120|gb|EFA69084.1| Transcriptional Regulator, BadM/Rrf2 family [Cylindrospermopsis
raciborskii CS-505]
Length = 160
Score = 71.9 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
I+ IA I E +L +IL L +AG+V++ RG +GG L R +I++L++V E
Sbjct: 44 LTINDIAAKQPIPERYLEQILTQLRRAGVVQSQRGSKGGFLLVREPWEISLLEIVSLIEG 103
Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
+ + + + +A A +VL +Y+++ L + R
Sbjct: 104 ERN-----EKRNANVLTIEKTLVWEIWERANTASVEVLGRYTLQDLCQERE 149
>gi|15887587|ref|NP_353268.1| hypothetical protein Atu0237 [Agrobacterium tumefaciens str. C58]
gi|15155126|gb|AAK86053.1| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 152
Score = 71.9 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 4/132 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ + + +L++ H + IA + + + + + L + G V + +G GG
Sbjct: 5 TRLSRV-LHILIHMEKH-EGAATSENIAAMLQTNPVVVRRTMAGLREHGYVSSEKGHGGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDV 121
L +P +IT+LD+ +A + A +C + + L + +A N
Sbjct: 63 WVLAQPLTEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAENILLSR 122
Query: 122 LTQYSIECLVRN 133
++ L
Sbjct: 123 FGSITLSTLAEE 134
>gi|16080716|ref|NP_391544.1| hypothetical protein BSU36630 [Bacillus subtilis subsp. subtilis
str. 168]
gi|221311621|ref|ZP_03593468.1| hypothetical protein Bsubs1_19801 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221315948|ref|ZP_03597753.1| hypothetical protein BsubsN3_19717 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320860|ref|ZP_03602154.1| hypothetical protein BsubsJ_19665 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325145|ref|ZP_03606439.1| hypothetical protein BsubsS_19831 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|81345681|sp|P71036|YWNA_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywnA
gi|1592697|emb|CAA69860.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
gi|2636188|emb|CAB15680.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. 168]
gi|291486238|dbj|BAI87313.1| hypothetical protein BSNT_05590 [Bacillus subtilis subsp. natto
BEST195]
Length = 133
Score = 71.9 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L ++ D IA++ + + + +++ L KA I+ + G
Sbjct: 2 INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADILTSRAGVP- 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + I++L+V +A ++ + + CP+ L A +
Sbjct: 59 GASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGKKIQNALDETFESVQRAMEN 118
Query: 121 VLTQYSIECLVRN 133
L S++ ++ +
Sbjct: 119 ELASKSLKDVMNH 131
>gi|329767570|ref|ZP_08259091.1| hypothetical protein HMPREF0428_00788 [Gemella haemolysans M341]
gi|328839197|gb|EGF88781.1| hypothetical protein HMPREF0428_00788 [Gemella haemolysans M341]
Length = 167
Score = 71.9 bits (175), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G
Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVVNDLVKANTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-------HKIDCPLVGSCGLTSVLR 112
GG + + ++T+ D+ A + + + S L V
Sbjct: 61 IGGGYKY-KSNKKVTLYDIYVALNDEVEIFALKTDYVSKIFEGALAVDKRYSKYLKKV-N 118
Query: 113 KALNAFFDVLTQYSI----ECLVRNRSSIK 138
A L + +I E ++ S I+
Sbjct: 119 TVNKAIKASLEEITIENLVEDILEENSKIR 148
>gi|301166543|emb|CBW26119.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
Length = 159
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 1/131 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ + K+ +Y + L + +I + K++Q + I+ +V+G
Sbjct: 2 LKVNKKVEYALMALKFMVEKGGELTSAREICDHFKTPFDTTAKVMQVMNSHDILSSVKGI 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG + I+ L + + E + C + + C L C + + +
Sbjct: 62 KGGYTINVDLSTISYLKLARIIEAKEVKSICQTNKGL-CELHCDCNIVNPMSTLSEKLNQ 120
Query: 121 VLTQYSIECLV 131
L SI+ L+
Sbjct: 121 FLNSLSIQELL 131
>gi|291545297|emb|CBL18406.1| transcriptional regulator, BadM/Rrf2 family [Ruminococcus sp.
18P13]
Length = 147
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 63/147 (42%), Gaps = 9/147 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L+ D +A + + + + K+L L AG+VE RG
Sbjct: 1 MQISSRFTLAVHILLCLDTFRDQYKVTSEFLAGSTNVHPVMIRKLLGQLKTAGLVEVTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG + +P +QIT+LDV +A + ++ + CP+ + L L +A
Sbjct: 61 -SGGASIAKPLEQITLLDVYRAVDSVDADSLFHFHEKPNQLCPVGRNVHGVLDPCLARAQ 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFN 142
+A L ++ + R ++ +
Sbjct: 120 HAMERELQSVTMAQV---RGELQHRLD 143
>gi|294053610|ref|YP_003547268.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
akajimensis DSM 45221]
gi|293612943|gb|ADE53098.1| transcriptional regulator, BadM/Rrf2 family [Coraliomargarita
akajimensis DSM 45221]
Length = 150
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 4/122 (3%)
Query: 10 GIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
I + Y A + +IAE + + + K+L L +AG+V+ RG GG L
Sbjct: 11 AISAMSYLAKVYDGGETKISSKEIAEERQLPQTLVAKLLVTLSQAGLVDGARGPNGGYWL 70
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
+ I + D+V+ E+ A C C C L L + L + S
Sbjct: 71 AKAPKDIVLYDIVRLFEKGGSGAMCPFGPD-WCGNGEPCPLHDQLVELDGNLMSFLERTS 129
Query: 127 IE 128
+
Sbjct: 130 LA 131
>gi|251799050|ref|YP_003013781.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247546676|gb|ACT03695.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 141
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 31/135 (22%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ R + +L I+N IA + + + +I+ L KAG++ + G
Sbjct: 2 ISSRFTVAVHILALVHINNGN-VTSEYIASSVNTNPAVIRRIMSMLSKAGLISSQPGVI- 59
Query: 63 GVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G++L P I++LDV KA E + + C + L+ LR A
Sbjct: 60 GIKLQHPIADISLLDVYKAVELPEKKELFTLHQNTNEHCVVGKGIQQALSDPLRDAQQQM 119
Query: 119 FDVLTQYSIECLVRN 133
L++ +IE +V+
Sbjct: 120 EQSLSRTTIEQIVKK 134
>gi|188990044|ref|YP_001902054.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
campestris pv. campestris str. B100]
gi|167731804|emb|CAP49988.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
campestris pv. campestris]
Length = 181
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A + P QIA + + + + + L +AG V++ +G
Sbjct: 30 RLSRM----LHVLLHMA-RSAQPMTSEQIARMLSTNAVVVRRTMAGLREAGYVQSSKGHH 84
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG +L R Q+T+LDV +A A C + + + L A
Sbjct: 85 GGWQLARDLAQVTLLDVHRAVGGPHLFAIGTDQDHPQCGVERVVNAAIADALTAAETLLL 144
Query: 120 DVLTQYSIECLVRNRSSIKK 139
+ L ++ L + ++ K
Sbjct: 145 ERLGTVTLADLASDFDALCK 164
>gi|320095699|ref|ZP_08027354.1| Rrf2 family transcriptional regulator [Actinomyces sp. oral taxon
178 str. F0338]
gi|319977374|gb|EFW09062.1| Rrf2 family transcriptional regulator [Actinomyces sp. oral taxon
178 str. F0338]
Length = 138
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
R I L+ + + P + IA + + ++ K+ L KAG + + GG
Sbjct: 3 TRFSSAIHALILIS-EAERPINSTAIAASVGTNASYIRKLTTRLAKAGFIAS-SRAAGGF 60
Query: 65 RLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
L PA QI++ D+ A ++ + + + +C + LT V + A
Sbjct: 61 TLTVPAQQISLRDIYCAVTDTDRIQLFDIHGNPNDECVVGAHIRPTLTDVFARQQEALER 120
Query: 121 VLTQYSIEC 129
LT ++
Sbjct: 121 ELTTTTLAD 129
>gi|169828207|ref|YP_001698365.1| YwnA [Lysinibacillus sphaericus C3-41]
gi|168992695|gb|ACA40235.1| YwnA [Lysinibacillus sphaericus C3-41]
Length = 137
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 46/134 (34%), Gaps = 4/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ R I +L A +D IA + + + + +++ L KAG++ + G
Sbjct: 2 VNSRFSVAIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLLSHSGV- 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
G L +T+L + +A + C + L V A
Sbjct: 61 AGYELLVEPKNLTLLAIYQAINGPEQLFAIHDEPNPACAVGREIQHTLEDVYTSIWQAME 120
Query: 120 DVLTQYSIECLVRN 133
L +++ ++
Sbjct: 121 AQLHAQTLQDVLDQ 134
>gi|83952084|ref|ZP_00960816.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius nubinhibens ISM]
gi|83837090|gb|EAP76387.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Roseovarius nubinhibens ISM]
Length = 143
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 2/124 (1%)
Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + + ++ IS +L ++ L +A +V +VRG GG RL RP
Sbjct: 3 ALADIAMQEANGLVTLGDVSRRQDISLPYLEQLFVKLRRAELVASVRGPGGGYRLARPPS 62
Query: 72 QITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+I + +++ A +E+ + + + L Q + +
Sbjct: 63 EIRVAEILAAVDETVDALHKGAGASGAASGSRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRNR 134
+ N
Sbjct: 123 IENE 126
>gi|119385841|ref|YP_916896.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119376436|gb|ABL71200.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 165
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A D P + + + + + + L +AG+V RG GG R+
Sbjct: 29 LHALLHMAEQ-DGPVTSEALGRCLGTNPVVVRRTMGLLREAGLVTAERGHAGGWRISADL 87
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIE 128
+++ + +A E A + +C + S L +A + + ++
Sbjct: 88 AAVSLRRLHEALGEPAIFAIGNRNETPECLVEQSVNAALEGAFAEAEALLLERFAEVTLA 147
Query: 129 CLVRN 133
L +
Sbjct: 148 DLAED 152
>gi|114327571|ref|YP_744728.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
gi|114315745|gb|ABI61805.1| rrf2 family protein [Granulibacter bethesdensis CGDNIH1]
Length = 149
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 56/129 (43%), Gaps = 7/129 (5%)
Query: 10 GIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
I V++ H + IAE ++ + +LQ L +AG++E+VRG RGG RL
Sbjct: 11 AISVMLDVGFHGSRTNTVSAADIAERIGLARRGMEPLLQSLSRAGLLESVRGPRGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
RP I + D+V VA+ H+ + + + + L ++
Sbjct: 71 RPKRDIRVSDIVA-----VAVADDGEGHEGPTGRLQVAVVDRLWTELEETVRAQLAAITL 125
Query: 128 ECLVRNRSS 136
+ L++ ++
Sbjct: 126 DDLLKRAAA 134
>gi|321313211|ref|YP_004205498.1| hypothetical protein BSn5_09255 [Bacillus subtilis BSn5]
gi|320019485|gb|ADV94471.1| hypothetical protein BSn5_09255 [Bacillus subtilis BSn5]
Length = 133
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 53/133 (39%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ R I +L ++ D IA++ + + + +++ L KA ++ + G
Sbjct: 2 INSRLAVAIHILSLISM--DEKTSSEIIADSVNTNPVVVRRMISLLKKADLLTSRAGVP- 58
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
G L + I++L+V +A ++ + + CP+ L A +
Sbjct: 59 GASLKKDPADISLLEVYRAVQKQEELFAVHENPNPKCPVGKKIQNALDETFESVQRAMEN 118
Query: 121 VLTQYSIECLVRN 133
L S++ ++ +
Sbjct: 119 ELASKSLKDVMNH 131
>gi|259416991|ref|ZP_05740911.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp.
TrichCH4B]
gi|259348430|gb|EEW60207.1| transcriptional regulator, BadM/Rrf2 family [Silicibacter sp.
TrichCH4B]
Length = 142
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 2/124 (1%)
Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + ++ I++ IS +L ++ L + G+V +VRG GG RL RPA
Sbjct: 3 ALADIALQPSEGLVVLADISKRQDISLPYLEQLFVKLRRGGLVASVRGPGGGYRLARPAS 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECL 130
+I +++++ A +E+ A + LT+ + + L Q + +
Sbjct: 63 EIRVVEILAAVDETVDAMHKGAGASGGSSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRNR 134
+ N
Sbjct: 123 IANE 126
>gi|116255261|ref|YP_771094.1| hypothetical protein pRL110061 [Rhizobium leguminosarum bv. viciae
3841]
gi|115259909|emb|CAK03003.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 151
Score = 71.9 bits (175), Expect = 3e-11, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + + + L + G V + +G
Sbjct: 6 RLSRM----LHVLIHMDKHQ-HSATSDMIAKMLNTNPVVVRRTMAGLREQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L RP IT+LDV A E A A + C + + L +++A
Sbjct: 61 GGWTLVRPLSDITLLDVYNAIGEPHLFAIGPADDQPQCLVEQAVNVALGDAMKEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
L +++ + +
Sbjct: 121 RRLDSVTLDKIAAD 134
>gi|172062519|ref|YP_001810170.1| BadM/Rrf2 family transcriptional regulator [Burkholderia ambifaria
MC40-6]
gi|171995036|gb|ACB65954.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia ambifaria
MC40-6]
Length = 146
Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA C + + + ++L L +G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSEAIAAMLCTNPVVVRRLLGGLRDSGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A
Sbjct: 61 GGWALAVALDDITLLDVYRAVGEPPVFSDLVSEDAPECLVEQAVNAHLSATLKEAEAVLL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 121 ARFGEVTLGMLSRD 134
>gi|304408323|ref|ZP_07389971.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304342792|gb|EFM08638.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 149
Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L++ + + + +A FL +I+ LV+AG+VE GR GG L +
Sbjct: 17 AVHALVWLS-QSGCVVSSAMMAGQVNSHATFLRRIMVHLVQAGMVEAKEGRDGGYFLRKS 75
Query: 70 ADQITILDVVKATEES--FFVAECFASHKIDCPLVGSC---GLTSVLRKALNAFFDVLTQ 124
IT+ DV A + A A + C G L S++ +A D L Q
Sbjct: 76 PADITLADVYMAVKSDCGTEQASVAADDEGGCGAAGQQLDSVLESIMGQAEQHTIDYLRQ 135
Query: 125 YSIECLVRN 133
++++ ++R
Sbjct: 136 FTVDDVMRQ 144
>gi|34763033|ref|ZP_00144008.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|237742023|ref|ZP_04572504.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
gi|256845364|ref|ZP_05550822.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|294785339|ref|ZP_06750627.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
gi|27887293|gb|EAA24389.1| hypothetical protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|229429671|gb|EEO39883.1| transcriptional regulator [Fusobacterium sp. 4_1_13]
gi|256718923|gb|EEU32478.1| conserved hypothetical protein [Fusobacterium sp. 3_1_36A2]
gi|294487053|gb|EFG34415.1| transcriptional regulator superfamily [Fusobacterium sp. 3_1_27]
Length = 141
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
GG +L R IT+ D V+ E+ + + C A + C + + L K N
Sbjct: 61 ANGGYKLNREPKDITLRDAVETIEDEIIIKDRSCIAG-QTSCSI-----IFGALEKVENN 114
Query: 118 FFDVLTQYSIECL 130
F L + + + L
Sbjct: 115 FLKNLEKVNFKEL 127
>gi|257468365|ref|ZP_05632459.1| BadM/Rrf2 family transcriptional regulator [Fusobacterium ulcerans
ATCC 49185]
gi|317062638|ref|ZP_07927123.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
gi|313688314|gb|EFS25149.1| transcriptional regulator [Fusobacterium ulcerans ATCC 49185]
Length = 144
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/142 (21%), Positives = 66/142 (46%), Gaps = 3/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T+ T+ I+ ++Y + + + I ++ S+ F+ K+L+PL A IV RG
Sbjct: 1 MKITQETNCAIKTILYLSTLQKGEISPAKTIGKSIGFSDKFVLKVLRPLTSANIVLPFRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L + D+IT+ DV+ A + + + + + S+ +
Sbjct: 61 VTGGYCLGKTTDKITLFDVIVAVQNDINILTVMKNMSKK--DIKKDEIFSIFDQIQELEK 118
Query: 120 DVLTQYSIECLVRNRSSIKKIF 141
+L + + + ++ N+ ++K I
Sbjct: 119 KILKKITFDMIINNKVNLKNIL 140
>gi|42522704|ref|NP_968084.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
gi|39573900|emb|CAE79077.1| transcriptional regulator [Bdellovibrio bacteriovorus HD100]
Length = 137
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 56/130 (43%), Gaps = 6/130 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+R + ++ A H ++ + + + +++ LV AG++ + +G+ GGV
Sbjct: 4 QRFSVSVHIMTALAYHKGDLMTSEELGASIRTNPTVIRRLISKLVDAGLLTSFKGKAGGV 63
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF----D 120
+L + +I++ DV A + +A +C + SC + ++ + ++ D
Sbjct: 64 KLAKAPKEISLRDVYVAITDKKLIATPDKEPFKNCVV--SCSMKKLMCELVDGIENNSMD 121
Query: 121 VLTQYSIECL 130
L + L
Sbjct: 122 YLGGIRLSDL 131
>gi|87309332|ref|ZP_01091468.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM
3645]
gi|87287971|gb|EAQ79869.1| conserved protein (RRF2 family protein) [Blastopirellula marina DSM
3645]
Length = 160
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/144 (23%), Positives = 63/144 (43%), Gaps = 4/144 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L++ Y ++ + A + P S++A + E FL ++L+ LV GI+ + RG
Sbjct: 1 MKLSRTVAYALQATLQLAETDSSSPVPCSKLAAKGDMPERFLLQVLRNLVTHGILRSTRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L RPA+QI++L++++A + + + + L L A
Sbjct: 61 VDGGYTLVRPAEQISLLEIIEAIDGPM---DSRLPIESEVDSSFQENLKEALANVTTAMR 117
Query: 120 DVLTQYSIECLVRNRSSIKKIFNA 143
L I LV ++ + +
Sbjct: 118 QQLADIKISKLVTKSTNGRPVIAP 141
>gi|260587960|ref|ZP_05853873.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583]
gi|331082470|ref|ZP_08331596.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium
6_1_63FAA]
gi|260541487|gb|EEX22056.1| FeS assembly SUF system regulator [Blautia hansenii DSM 20583]
gi|330400956|gb|EGG80557.1| hypothetical protein HMPREF0992_00520 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 136
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +T+ DYG+R++ A N + QI E ++ F++KIL+ L K IV++ RG
Sbjct: 1 MLITRECDYGVRIIRALA--NGDKMCVHQICEQEDLTPAFVYKILKKLEKKEIVKSFRGS 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAF 118
GG L ++T+LD+ A + F++ EC K C + L +
Sbjct: 59 NGGYALKSSVKELTLLDIYLAVDPEFYMIECMNPQKPCTHNQSDCGCAVHRELARVQQIL 118
Query: 119 FDVLTQYSIECLV 131
L +SI ++
Sbjct: 119 LTELKVHSIAEII 131
>gi|227431453|ref|ZP_03913502.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
gi|227352819|gb|EEJ42996.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
mesenteroides subsp. cremoris ATCC 19254]
Length = 150
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + VL+ A+ D P + ++E +SE +L K ++ LV A +++ +
Sbjct: 1 MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLGVSESYLKKTMRKLVVANLIKAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP-----LVGSCGLTSVLRKA 114
+ GG +L R + IT+LDV +A E P + G+ + S++ +A
Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIEGEDSFIHSTQLADRVFPAKTAVVEGTKEVLSIVYEA 120
Query: 115 LNAFFDVLTQYSIECLV 131
F L + SI L+
Sbjct: 121 EKDFKKRLKRTSIADLL 137
>gi|224477582|ref|YP_002635188.1| hypothetical protein Sca_2098 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222422189|emb|CAL29003.1| hypothetical protein SCA_2098 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 173
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + + L+ A + +AE+ + + + + + L A ++ RG
Sbjct: 1 MRVSTQFPIAVHALLMIAYFPNIRVTSDMVAESVGKNPVIIRNVYKKLKDADLLTVQRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESF--FVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
G L RPA +IT+ D+ KA E + + + C + GS LT L++A++
Sbjct: 61 -GTTELIRPASKITLWDIYKAVETDQIDEIFKFPETLSGVCTVGGSIRELLTIHLQEAID 119
Query: 117 AFFDVLTQYSIECL 130
+ L++ ++E L
Sbjct: 120 ELKNALSKTTVEEL 133
>gi|229552795|ref|ZP_04441520.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
gi|258540586|ref|YP_003175085.1| transcriptional regulator Rrf2 family [Lactobacillus rhamnosus Lc
705]
gi|229313777|gb|EEN79750.1| transcriptional regulator [Lactobacillus rhamnosus LMS2-1]
gi|257152262|emb|CAR91234.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus Lc
705]
Length = 146
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M + + + Y A H D I +I+E I + KI L K+GI+
Sbjct: 1 MAFSVAFSQALEITAYVNAKSQAQHED-YLSIQKISEMLNIPVPSIKKISSTLKKSGILT 59
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109
+ G GG+RL + IT+ +++ A E + + + + G T+
Sbjct: 60 SKTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLTASTN 119
Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136
VL +A +A VL Q SI L +
Sbjct: 120 VLNRAEDAMVQVLKQTSIADLAEAAEA 146
>gi|260464287|ref|ZP_05812479.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
gi|259029911|gb|EEW31195.1| transcriptional regulator, BadM/Rrf2 family [Mesorhizobium
opportunistum WSM2075]
Length = 172
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + I A + + + +AE+ +S +L K L L A I+E+V G
Sbjct: 1 MKLGEGVEAAIHCAATLASVEGNSTMPGAALAESFGLSPSYLLKHLNMLTAARILESVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113
GG RL +PA++IT+LD+V A E C + + + CG+ + + K
Sbjct: 61 PAGGYRLAKPAERITLLDIVLAVEGREPAFRCGEIRRNGPVKLDASAYVKPCGINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A A+ L + + +V +
Sbjct: 121 AERAYRAALAETRLSDIVATYQA 143
>gi|294791271|ref|ZP_06756428.1| Rrf2 family protein [Scardovia inopinata F0304]
gi|294457742|gb|EFG26096.1| Rrf2 family protein [Scardovia inopinata F0304]
Length = 150
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 7/147 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + + +++Y AI HN IA++ + + KI+ L KAG++ + RG
Sbjct: 5 MKQSVQLSDSVHIMLYLAIKHNPDQLTSEAIAQSVNTNPSAVRKIMSNLKKAGLISSHRG 64
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + RP IT+LD+ + + + + CP+ + L +
Sbjct: 65 KADP-VIIRPLKDITLLDIFHSLPGTNDLLQPDRHTSRSCPVGANIQTVLNEKYHQIQLV 123
Query: 118 FFDVLTQYSIECLVRNRSSIKKIFNAG 144
D +++ +++ L I + G
Sbjct: 124 IEDQMSRITLKELT---DEINGLIGEG 147
>gi|325696168|gb|EGD38059.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK160]
gi|327460971|gb|EGF07304.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK1057]
Length = 160
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +A + + ++ K++ L AG++ + +G+ G
Sbjct: 20 TKFSVALHILTMIS-ESRETLSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGK-SGY 77
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++++L++ AT+E + + + +CP+ + ++ + A
Sbjct: 78 QLGKIPKKMSLLEIYYATQEVKHISLFQMHQNANQECPVGQNIQEAVSPIFASAEAQLEK 137
Query: 121 VLTQYSIECLVRN 133
L +++ ++ N
Sbjct: 138 ALRHQTLDDVINN 150
>gi|206603887|gb|EDZ40367.1| Putative transcriptional regulator, BadM/Rrf2 family
[Leptospirillum sp. Group II '5-way CG']
Length = 159
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 1 MHLTKRTDYGIRVLM---YCAIH-------NDYPNRISQIAEACCISELFLFKILQPLVK 50
M R +L+ Y H + +AE+ + + +IL L K
Sbjct: 13 MAANSRFAVATHLLVGLGYLPAHTPPHDPKKGEWVNSAHLAESVNTHPVVVRRILGDLRK 72
Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLT 108
AG+V + +G+ GGV L + + I++L++ +A E A CP+ + +
Sbjct: 73 AGLVISQQGKNGGVALGKRPEDISLLEIFRAVGEESVFAFNPNPPNPKCPVSVNMFRLIE 132
Query: 109 SVLRKALNAFFDVLTQYSIECLV 131
V R A L + + L+
Sbjct: 133 PVFRAVGVALEKELDRIRLSDLI 155
>gi|121996942|ref|YP_001001729.1| BadM/Rrf2 family transcriptional regulator [Halorhodospira
halophila SL1]
gi|121588347|gb|ABM60927.1| transcriptional regulator, BadM/Rrf2 family [Halorhodospira
halophila SL1]
Length = 176
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 12/138 (8%)
Query: 2 HLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+T R Y + +++ A+H++ P +++I+ IS ++ +I L I+E + G
Sbjct: 12 QVTARGRYAVGAVLHIALHDEIGPVPLAEISVCQNISTSYVDQIFADLRPHRIIEGIPGP 71
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG RL RPA ++T+ +++ A E ++ + +V + +
Sbjct: 72 GGGYRLARPASEVTVAEIIAAVERREAGTTYRSALEG-----------AVWSRLMADIAH 120
Query: 121 VLTQYSIECLVRNRSSIK 138
+ + ++ LV ++ +
Sbjct: 121 FMERLTVADLVERPAARE 138
>gi|184155248|ref|YP_001843588.1| hypothetical protein LAF_0772 [Lactobacillus fermentum IFO 3956]
gi|183226592|dbj|BAG27108.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
Length = 158
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R I ++++ A D + IA++ ++ + +I+ L + I+++V G
Sbjct: 8 MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 67
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+L + ++ + + +A + + +C + L + + A
Sbjct: 68 HVCP-QLVKDPAELDLATIYQAVDG-GDLLHFNNETNTECRIGEGMPDALDLIFGQVQRA 125
Query: 118 FFDVLTQYSIECLVRN 133
L YSI ++
Sbjct: 126 ALAKLATYSIRDVLNQ 141
>gi|255534651|ref|YP_003095022.1| rrf2 family protein (putative transcriptional regulator)
[Flavobacteriaceae bacterium 3519-10]
gi|255340847|gb|ACU06960.1| rrf2 family protein (putative transcriptional regulator)
[Flavobacteriaceae bacterium 3519-10]
Length = 144
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 28/132 (21%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGI+ +Y A + + + +A + F KILQ L + I+++VRG+
Sbjct: 2 FSKACEYGIKAAIYIAQQSQLNRTVNVKDVALSIDAPVAFTAKILQLLCREEILQSVRGK 61
Query: 61 RGGVRL-CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG Q I D+V + +C + C C + + + + F
Sbjct: 62 QGGFFFSEEKQRQFRIYDLVTRIDGDGLFTQCGLGLQR-CSSENPCPVHNDFKIVRDRLF 120
Query: 120 DVLTQYSIECLV 131
++ ++++ L
Sbjct: 121 EMTSKHTFFDLA 132
>gi|227514658|ref|ZP_03944707.1| possible transcriptional regulator [Lactobacillus fermentum ATCC
14931]
gi|227086967|gb|EEI22279.1| possible transcriptional regulator [Lactobacillus fermentum ATCC
14931]
Length = 151
Score = 71.5 bits (174), Expect = 4e-11, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R I ++++ A D + IA++ ++ + +I+ L + I+++V G
Sbjct: 1 MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+L + ++ + + +A + + +C + L + + A
Sbjct: 61 HVCP-QLVKDPAELDLATIYQAVDG-GDLLHFNNETNTECRIGEGMPDALDLIFGQVQRA 118
Query: 118 FFDVLTQYSIECLVRN 133
L YSI ++
Sbjct: 119 ALAKLATYSIRDVLNQ 134
>gi|124514978|gb|EAY56489.1| putative transcriptional regulator, BadM/Rrf2 family
[Leptospirillum rubarum]
Length = 159
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 12/143 (8%)
Query: 1 MHLTKRTDYGIRVLM---YCAIH-------NDYPNRISQIAEACCISELFLFKILQPLVK 50
M R +L+ Y H + +AE+ + + +IL L K
Sbjct: 13 MAANSRFAVATHLLVGLGYLPAHTPLQDPKKGEWVNSAHLAESVNTHPVVVRRILGDLRK 72
Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLT 108
AG+V + +G+ GGV L + + I++L++ +A E A CP+ + +
Sbjct: 73 AGLVISQQGKNGGVALGKRPEDISLLEIFRAVGEESVFAFNPNPPNPKCPVSVNMFRLIE 132
Query: 109 SVLRKALNAFFDVLTQYSIECLV 131
V R A L + + L+
Sbjct: 133 PVFRAVGVALEKELDRIRLSDLI 155
>gi|157738370|ref|YP_001491054.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
RM4018]
gi|315636657|ref|ZP_07891890.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
JV22]
gi|157700224|gb|ABV68384.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter butzleri
RM4018]
gi|315479083|gb|EFU69783.1| BadM/Rrf2 family transcriptional regulator [Arcobacter butzleri
JV22]
Length = 137
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + YG+ + + H D P +I I+ I + +L ++L L KA +V ++RG R
Sbjct: 4 ISTKGVYGLSAMYELSKHKADTPMQIKDISANANIPQNYLEQLLSKLRKANLVNSIRGAR 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L + D+I I+D++ A E+ + + + + L ++ N+ +
Sbjct: 64 GGYILAKKPDEIKIVDILIALEDDIKIIDSKSENP---------ILNIFFDESKNSMKKI 114
Query: 122 LTQYSIECLVRNRSSIKKIF 141
+ L + ++
Sbjct: 115 FD-IKLSKLDEYQEKYNEVL 133
>gi|91976008|ref|YP_568667.1| hypothetical protein RPD_1529 [Rhodopseudomonas palustris BisB5]
gi|91682464|gb|ABE38766.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris BisB5]
Length = 154
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T G+ ++ A H D IA+ IS L K+L+ LV+A ++E+VRG
Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAKKYDISLNHLAKVLRTLVRARLIESVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG ++T+LD++ A E A + S L VL
Sbjct: 61 GGGYTFSGNPKRVTLLDII-ALFEDTAPA---SDLTASDDHEESRALHKVLGDIDEIAIT 116
Query: 121 VLTQYSIECLVR 132
L S+ L++
Sbjct: 117 TLRSVSLTSLLK 128
>gi|152994406|ref|YP_001339241.1| BadM/Rrf2 family transcriptional regulator [Marinomonas sp. MWYL1]
gi|150835330|gb|ABR69306.1| transcriptional regulator, BadM/Rrf2 family [Marinomonas sp. MWYL1]
Length = 152
Score = 71.1 bits (173), Expect = 4e-11, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ D P +IA + + + + + L G V +V+G
Sbjct: 10 RLSRM----LHVLIHM-NQLDAPATSEKIASMLNTNPVVVRRTMAGLRDKGYVSSVKGHG 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFF 119
GG L IT+LD+ A ES + CP+ + ++ VL +A
Sbjct: 65 GGWSLAISLSDITLLDIHNAIGESSVFTIGLSDEHTSCPIEIAVNQAISDVLIEAEALLL 124
Query: 120 DVLTQYSIECLV 131
+ ++E L
Sbjct: 125 ERFRDVTLEMLA 136
>gi|313676819|ref|YP_004054815.1| transcriptional regulator, badm/rrf2 family [Marivirga tractuosa
DSM 4126]
gi|312943517|gb|ADR22707.1| transcriptional regulator, BadM/Rrf2 family [Marivirga tractuosa
DSM 4126]
Length = 144
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 4/126 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP--NRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +Y IR +Y A + + IA+ E F KILQ LVK +V +++G
Sbjct: 2 FSKTCEYAIRATIYIANKSKEGTNVGLKDIAKNIDSPEAFTAKILQKLVKDDLVSSIKGP 61
Query: 61 RGGVRLCR-PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
GG L ++ ++DVV+ + S C C C + ++
Sbjct: 62 NGGFSLSATQQKEVYLIDVVRCIDGSQTYDGC-GLGLSQCSEEKPCPIHFQFKEVRTKLK 120
Query: 120 DVLTQY 125
+L
Sbjct: 121 RMLENT 126
>gi|255034872|ref|YP_003085493.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
DSM 18053]
gi|254947628|gb|ACT92328.1| transcriptional regulator, BadM/Rrf2 family [Dyadobacter fermentans
DSM 18053]
Length = 136
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 7 TDYGI--RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ I +L A D +A + I+ + + K L L + G+V + G+ GG
Sbjct: 4 GRFAISVHILTLLAFSEDEWTSSEYLAGSININPVLVRKELGNLRERGLVASKEGKSGGS 63
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
RL +PA QI + +V +A + + + S DCP+ L + A L
Sbjct: 64 RLAKPAGQIFMSEVYEAVRQKDLLGKGINSPNPDCPVGRKINDHLDGLYDAAEQTLLASL 123
Query: 123 TQYSIECLVRN 133
+ S+
Sbjct: 124 GKVSLAEFCAK 134
>gi|199598905|ref|ZP_03212315.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
rhamnosus HN001]
gi|199590213|gb|EDY98309.1| transcriptional regulator, BadM/Rrf2 family protein [Lactobacillus
rhamnosus HN001]
Length = 146
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 12/147 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M + + + Y A H D I +I+E I + KI L K+GI+
Sbjct: 1 MAFSVAFSQALEITAYVNAKSQAQHED-YLSIQKISEMLNIPVPSIKKISSTLKKSGILT 59
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109
+ G GG+RL + IT+ +++ A E + + + + G T+
Sbjct: 60 SKTGLNGGLRLAKTPQTITVYEILAAIEGTAPLFKLHQEIDPAAFVNGERVTSWLVASTN 119
Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136
VL +A +A VL Q SI L +
Sbjct: 120 VLNRAEDAMVQVLKQTSIADLAEAAEA 146
>gi|118475517|ref|YP_892257.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
subsp. fetus 82-40]
gi|118414743|gb|ABK83163.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus
subsp. fetus 82-40]
Length = 134
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M TK ++Y + + ++ P + ++ IS+ FL KILQ L K GI+ + +G
Sbjct: 1 MLFTKASEYALLS-LILLSQSNSPKDVDTMSTELGISKSFLAKILQNLAKEGILNSFKGA 59
Query: 61 RGGVRLCRPADQITILDVVK-ATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNA 117
GG L I+I +++ A + V EC ++ + DCP C + +
Sbjct: 60 NGGFILANKPANISIKKILESAEKRKASVFEC-SNARSDCPSNKGDICKMWPMFNSLQLK 118
Query: 118 FFDVLTQYSIECLVRN 133
D L S+ +++
Sbjct: 119 VDDFLDNISLADIIKK 134
>gi|86608330|ref|YP_477092.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556872|gb|ABD01829.1| rrf2 family protein [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 146
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y + L+ A H + +I +IA I + +L ++L L + G+V + R
Sbjct: 1 MELSCKSEYALLALLELAQHYSDGQVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G +GG L R QI++LDV++A E P L + A A
Sbjct: 61 GSKGGYFLARAPWQISLLDVIQAIEGEDLSRSRDLPSGDLTPERE--VLLKAWQDAQAAA 118
Query: 119 FDVLTQYSIECLVR 132
+L + +++ L
Sbjct: 119 VAILQKTTLQDLCD 132
>gi|294818112|ref|ZP_06776754.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces
clavuligerus ATCC 27064]
gi|294322927|gb|EFG05062.1| Transcriptional regulator, BadM/Rrf2 family [Streptomyces
clavuligerus ATCC 27064]
Length = 143
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + ++ QIA + + + + ++L L + G+V++
Sbjct: 1 MGANSRLTVAAHALTWIGLYQRRGHEVATSEQIASSVNTNPVVIRRLLAQLREGGLVDSR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
RG G L R IT+LDV +A E A A+ +C + L +
Sbjct: 61 RGTGAGWMLSRDLPTITLLDVYEAVETGPVFALHPAAPDPECVVGRGIAPVLGAAYDGVE 120
Query: 116 NAFFDVLTQYSIECLVRN 133
A L + ++E ++R+
Sbjct: 121 AALRAELARTTLEDVLRD 138
>gi|116490751|ref|YP_810295.1| BadM/Rrf2 family transcriptional regulator [Oenococcus oeni PSU-1]
gi|290890174|ref|ZP_06553256.1| hypothetical protein AWRIB429_0646 [Oenococcus oeni AWRIB429]
gi|116091476|gb|ABJ56630.1| transcriptional regulator, BadM/Rrf2 family [Oenococcus oeni PSU-1]
gi|290480218|gb|EFD88860.1| hypothetical protein AWRIB429_0646 [Oenococcus oeni AWRIB429]
Length = 146
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/143 (20%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
T+ +D VL+Y A+H + + S+IA + + + +I+ L KA ++ V+G
Sbjct: 4 TQLSD-ATHVLVYIALHKNKQSVKSSEIAVSLQTAPSLVRRIMSKLKKAHLLNAVQGSPQ 62
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
L + A+QIT+ + A + + + + CP+ + L R+ A
Sbjct: 63 P-VLAKAAEQITLQETYLAVSQKRNLLNVDQNTDMLCPIGTAIPKVLDHYYREIQTAAEM 121
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
+ + +++ ++ + + +K F++
Sbjct: 122 KMAEITLQDIINDTKAREKQFDS 144
>gi|329847412|ref|ZP_08262440.1| transcriptional regulator family protein [Asticcacaulis
biprosthecum C19]
gi|328842475|gb|EGF92044.1| transcriptional regulator family protein [Asticcacaulis
biprosthecum C19]
Length = 151
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 57/139 (41%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M ++R L Y A N + S +A + + + + ++ L KAG+V T
Sbjct: 1 MSDSQRFPVAAHTLAYLAHRNAYSREAAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVAT 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
G GG L + + I + +V++A + CP+ + + S ++ A
Sbjct: 61 CSGVAGGAWLLKRPEDIRLDEVLRAVNGCAHLGS-APIGAEGCPVSQAIPKAVNSAMQLA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
A + L ++ L+R+
Sbjct: 120 NQAASEALATVTVADLLRH 138
>gi|254476324|ref|ZP_05089710.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
gi|214030567|gb|EEB71402.1| transcriptional regulator, BadM/Rrf2 family [Ruegeria sp. R11]
Length = 142
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 2/123 (1%)
Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + + I++ IS +L ++ L +AG+V++VRG GG RL RPA
Sbjct: 3 ALADIALQPEGHLVVLGDISKRQDISLPYLEQLFVKLRRAGLVDSVRGPGGGYRLARPAS 62
Query: 72 QITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+I ++DV+ A +E+ + + + L Q + +
Sbjct: 63 EIRVVDVLGAVDETVDAMHKGAGASGGLSGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRN 133
++N
Sbjct: 123 IKN 125
>gi|312870588|ref|ZP_07730703.1| transcriptional regulator, Rrf2 family [Lactobacillus oris
PB013-T2-3]
gi|311093903|gb|EFQ52232.1| transcriptional regulator, Rrf2 family [Lactobacillus oris
PB013-T2-3]
Length = 154
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I+ P IA + S + + +++ L K G++ETV G
Sbjct: 1 MRVSTRLSDSIHILAFLQIYRGKVPLTSENIAGSVETSPVVVRRLMSALRKGGLIETVLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
RL RPAD+I++ D+ A E + +C + G+ L ++A
Sbjct: 61 FADP-RLARPADEISLYDIYLAVEGPDRHLFAIDEKTAPECIVGGNIQATLAEYYQQAET 119
Query: 117 AFFDVLTQYSIECLVR 132
A L S++ ++
Sbjct: 120 AAQAKLAGISLQDVLD 135
>gi|284045053|ref|YP_003395393.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2
family [Conexibacter woesei DSM 14684]
gi|283949274|gb|ADB52018.1| transcriptional regulator, BadM/Rrf2 family [Conexibacter woesei
DSM 14684]
Length = 130
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T ++ Y +R L P I+++A I FL ++ L +AG++++ RG +
Sbjct: 4 ITTKSPYALRALTELGRLGGSGPVPIAELARRREIPVQFLEQLFAVLRRAGVLKSQRGVK 63
Query: 62 GGVRLCRPADQITILDVVKATEE 84
GG R +IT+L++V+ +
Sbjct: 64 GGYSFAREPGEITVLEIVELLDG 86
>gi|241889351|ref|ZP_04776652.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans
ATCC 10379]
gi|241863894|gb|EER68275.1| transcriptional regulator, BadM/Rrf2 family [Gemella haemolysans
ATCC 10379]
Length = 167
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 32/150 (21%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G
Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVVNDLVKANTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-------HKIDCPLVGSCGLTSVLR 112
GG + + ++T+ DV A + + + S L V
Sbjct: 61 IGGGYKY-KSNKKVTLYDVYVALNDEVEIFALKTDYVSKIFEGALAVDKRYSKYLKKV-N 118
Query: 113 KALNAFFDVLTQYSI----ECLVRNRSSIK 138
A L + +I E ++ S I+
Sbjct: 119 TVNKAIKSSLEEITIENLVEDILEENSKIR 148
>gi|326335576|ref|ZP_08201763.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325692342|gb|EGD34294.1| BadM/Rrf2 family transcriptional regulator [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 143
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 3/128 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + Y I ++Y AI++ + + +IAE I FL KILQ L K + + +G
Sbjct: 2 LSNSSKYAINAVLYLAINSSVNNKKGVKEIAETLQIPTAFLAKILQVLAKKEAICSTKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG L + + +V + S A C + C C + ++ F +
Sbjct: 62 GGGFYLTEEKAKAPLASIVHYIDGSDKFAVCLLGIR-SCSEEIPCPMHYAVKPFKVRFLE 120
Query: 121 VLTQYSIE 128
L ++SIE
Sbjct: 121 ELEKHSIE 128
>gi|53721942|ref|YP_110927.1| DNA-binding protein [Burkholderia pseudomallei K96243]
gi|167742245|ref|ZP_02415019.1| DNA-binding protein [Burkholderia pseudomallei 14]
gi|167819422|ref|ZP_02451102.1| DNA-binding protein [Burkholderia pseudomallei 91]
gi|254192911|ref|ZP_04899346.1| transcriptional regulator [Burkholderia pseudomallei S13]
gi|254264345|ref|ZP_04955210.1| transcriptional regulator [Burkholderia pseudomallei 1710a]
gi|254300275|ref|ZP_04967721.1| transcriptional regulator [Burkholderia pseudomallei 406e]
gi|52212356|emb|CAH38380.1| putative DNA-binding protein [Burkholderia pseudomallei K96243]
gi|157810436|gb|EDO87606.1| transcriptional regulator [Burkholderia pseudomallei 406e]
gi|169649665|gb|EDS82358.1| transcriptional regulator [Burkholderia pseudomallei S13]
gi|254215347|gb|EET04732.1| transcriptional regulator [Burkholderia pseudomallei 1710a]
Length = 153
Score = 71.1 bits (173), Expect = 5e-11, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + + L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMREALGEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLARD 134
>gi|206562460|ref|YP_002233223.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
gi|198038500|emb|CAR54458.1| putative transcriptional regulator [Burkholderia cenocepacia J2315]
Length = 146
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA C + + + ++L L G V++ +G
Sbjct: 6 RLSRM----LHALIHM-DQADGPLTSETIATMLCTNPVVVRRLLGGLRDCGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ ++C + + L++ L++A +
Sbjct: 61 GGWALSVALDDITLLDVYRAVGEPPLFSDLVPEDALECLVEQAVNAHLSATLKEAEASLL 120
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 121 ARFGEVTLGMLSRD 134
>gi|330717994|ref|ZP_08312594.1| transcriptional regulator [Leuconostoc fallax KCTC 3537]
Length = 153
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +++ + + VL+ A+ D P + ++ +SE + K ++ L AGIV +
Sbjct: 1 MKMSQAVEQSLVVLIMLAVQQDNAPVKSHILSSRLEVSESYFKKTMRKLRIAGIVTAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES------FFVAECFASHKIDCPLVGSCGLTSVLRK 113
+ GG +L RP QIT+LDV +A E +A+ + G+ + +++
Sbjct: 61 KEGGFKLARPLHQITLLDVYEAIEGEDSFIHSTQLADRIFKGSDELVKSGTKEVLAIIYD 120
Query: 114 ALNAFFDVLTQYSIECLVRN--RSSIKKI 140
A AF L Y+I ++ + SI+ I
Sbjct: 121 AEQAFKQKLADYTIADILSHIGEESIEAI 149
>gi|237740772|ref|ZP_04571253.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
gi|229422789|gb|EEO37836.1| transcriptional regulator [Fusobacterium sp. 2_1_31]
Length = 138
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 63/141 (44%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKALNA 117
GG +L + IT+ D V+ E+ + + C A + C + L N
Sbjct: 61 ANGGYKLNKDPKDITLRDAVETIEDEIIIKDRSCVAG-QTSCS-----VIFKALESVENN 114
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
F + L + + + L +K
Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135
>gi|154148775|ref|YP_001406452.1| BadM/Rrf2 family transcriptional regulator [Campylobacter hominis
ATCC BAA-381]
gi|153804784|gb|ABS51791.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter hominis
ATCC BAA-381]
Length = 137
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTKR Y +++ + + P I IA+ S+ +L + + L KAG+++ +RG
Sbjct: 4 LTKRGVYAAIIMLEISKGDKTAPVSIKSIADTLGKSKNYLEQAINALRKAGLIKALRGPN 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L + ++IT D+ ATE + ++ L N
Sbjct: 64 GGYFLLKKPNEITFGDIFNATEGELVMTNLDIKNEN---------LKRFFDDLNNKIKKT 114
Query: 122 LTQYSIEC 129
L +
Sbjct: 115 LE-IPLSD 121
>gi|326692599|ref|ZP_08229604.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773]
Length = 141
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 20/135 (14%), Positives = 47/135 (34%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ IA + + + ++ L AG++ T +G
Sbjct: 1 MRFSYKLSDAIHILAYIHINQTNDLSSKAIAASIGANASVVRSLMLDLRAAGLLTTRQGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+ I++ D+ A + + +C + G L +A
Sbjct: 61 ATPALAQ-LPEDISLYDIYMAINMTHQLLHIDPKTNPNCLVGGQIQATLNHFYTDIESAA 119
Query: 119 FDVLTQYSIECLVRN 133
+ + S+ ++ +
Sbjct: 120 YQKMQAISLADVISD 134
>gi|167578112|ref|ZP_02370986.1| Transcriptional regulator family protein [Burkholderia
thailandensis TXDOH]
Length = 153
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D +T+LDV +A + + + + DC + +T L +A
Sbjct: 61 GGWELACELDAMTLLDVYRAIGQPPLFSIGSHADQPDCLVEKAVDARMTEALNEAETLLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGGITVGDLARD 134
>gi|254387868|ref|ZP_05003106.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064]
gi|326446779|ref|ZP_08221513.1| transcriptional regulator, BadM/Rrf2 family protein [Streptomyces
clavuligerus ATCC 27064]
gi|197701593|gb|EDY47405.1| rrf2 family protein [Streptomyces clavuligerus ATCC 27064]
Length = 146
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 55/138 (39%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + ++ QIA + + + + ++L L + G+V++
Sbjct: 4 MGANSRLTVAAHALTWIGLYQRRGHEVATSEQIASSVNTNPVVIRRLLAQLREGGLVDSR 63
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
RG G L R IT+LDV +A E A A+ +C + L +
Sbjct: 64 RGTGAGWMLSRDLPTITLLDVYEAVETGPVFALHPAAPDPECVVGRGIAPVLGAAYDGVE 123
Query: 116 NAFFDVLTQYSIECLVRN 133
A L + ++E ++R+
Sbjct: 124 AALRAELARTTLEDVLRD 141
>gi|118588622|ref|ZP_01546030.1| Transcriptional regulator family protein [Stappia aggregata IAM
12614]
gi|118438608|gb|EAV45241.1| Transcriptional regulator family protein [Stappia aggregata IAM
12614]
Length = 137
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ D P QI + + + + + L +AG V +G GG L +
Sbjct: 2 LHVLLHLDQTQD-PVTSDQIGKMLNTNPSLVRRTMAGLREAGFVGATKGHGGGWVLAKNL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
D I++ +V A A ++ C + ++ L A F + L Q ++
Sbjct: 61 DSISLAEVYAALGSPQLFAVGKSADAPTCLLEQAANRATSAALEAARETFQEKLGQVTVA 120
Query: 129 CLVR-NRSSIKK 139
LVR + I++
Sbjct: 121 DLVRPHAQEIRQ 132
>gi|120611990|ref|YP_971668.1| BadM/Rrf2 family transcriptional regulator [Acidovorax citrulli
AAC00-1]
gi|120590454|gb|ABM33894.1| transcriptional regulator, BadM/Rrf2 family [Acidovorax citrulli
AAC00-1]
Length = 147
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 47/122 (38%), Gaps = 3/122 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A H +A+ + + + + L +AGIV + +G GG R+
Sbjct: 11 LHALLHMAGHEGR-MTSDALAQCLGTHPVVVRRTMGYLREAGIVTSDKGHAGGWRIHADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ + +A E A + +C + + L +A ++ ++
Sbjct: 70 GTVTLRQLHEALGEPAMFAIGNRNESPECLVEQAVNAALAGTFAEAEALLLKRFSEITLA 129
Query: 129 CL 130
L
Sbjct: 130 DL 131
>gi|32475221|ref|NP_868215.1| a transcriptional regulator [Rhodopirellula baltica SH 1]
gi|32445762|emb|CAD78493.1| conserved hypothetical protein-putative a transcriptional regulator
[Rhodopirellula baltica SH 1]
Length = 124
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 3/124 (2%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
P +AE + +L ++LQ L AG+V + G GG LC P D +TIL
Sbjct: 1 MGSQVGKPVPADHLAEQTKVPRRYLTRVLQDLGAAGLVRSRPGPGGGYELCVPTDTLTIL 60
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
DVV + +C K C L + L + A + +I+ LV + +
Sbjct: 61 DVVNTVAPVERIRKCPLGLK---SHTDLCPLHTELDRVYAATEEAFRGVTIDDLVNSTNP 117
Query: 137 IKKI 140
I +
Sbjct: 118 ILPL 121
>gi|149180765|ref|ZP_01859268.1| transcriptional regulator [Bacillus sp. SG-1]
gi|148851555|gb|EDL65702.1| transcriptional regulator [Bacillus sp. SG-1]
Length = 206
Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats.
Identities = 32/128 (25%), Positives = 53/128 (41%), Gaps = 8/128 (6%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I+ L+ A H + +AE +FL KIL+ LVK +++ GR GG L +
Sbjct: 83 AIQALLVLANH-EGLCPSGVLAEKLDSKSVFLRKILRHLVKEELIQAKEGRDGGYYLVKN 141
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF----DVLTQY 125
+ I + DV A F F +C +C L + + + L Q
Sbjct: 142 PEDIKLSDVYNAMRSETFSKGFFDVESKEC--FAAC-TRDSLFELRDEMESWIVNGLEQK 198
Query: 126 SIECLVRN 133
+I+ L++
Sbjct: 199 TIKDLMKQ 206
>gi|254509346|ref|ZP_05121435.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
16]
gi|219547742|gb|EED24778.1| HTH-type transcriptional regulator IscR [Vibrio parahaemolyticus
16]
Length = 115
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
+V +VRG GG RL A I+I V+ A +ES +C + K DC C ++ R
Sbjct: 1 MVASVRGPGGGYRLGEDAQSISIGTVIAAVDESVDATKC--NGKGDCQGGTRCLTHTLWR 58
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIK 138
+ D L ++ L+ + ++
Sbjct: 59 DLSSRISDFLNNITLGELMHDNEVLE 84
>gi|238062427|ref|ZP_04607136.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
gi|237884238|gb|EEP73066.1| transcriptional regulator [Micromonospora sp. ATCC 39149]
Length = 141
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 5/138 (3%)
Query: 1 MHLTKRTDYGIRVL--MYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + A H ++A + + + + + L L +AG+V
Sbjct: 1 MAANSRVTIAAHALAWLELARRHGREVLTSEEVAASVNTNAVIVRRSLGDLQRAGLVRAR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RG G L RPA +IT+LDV A +A + ++C + LT + +A
Sbjct: 61 RGNGAGFSLGRPATEITLLDVWLAVSPEPLLALHHSEPNLECQVGRGIRPVLTDLYDEAT 120
Query: 116 NAFFDVLTQYSIECLVRN 133
N F L ++++ ++
Sbjct: 121 NTFRAALARWTVNDVLER 138
>gi|27383085|ref|NP_774614.1| hypothetical protein blr7974 [Bradyrhizobium japonicum USDA 110]
gi|27356259|dbj|BAC53239.1| blr7974 [Bradyrhizobium japonicum USDA 110]
Length = 152
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 50/135 (37%), Gaps = 6/135 (4%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A P +A+A + + + +I+ L G V + +G GG L
Sbjct: 11 LHVLLHMAQQPG-PFTSETLAKAMDTNPVVIRRIMAGLRDLGYVRSEKGHGGGWTLACDL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
++T+ DV A +A + C + + L + A L ++
Sbjct: 70 SKVTLRDVYTALGNPPLLAMGNRTEAPGCLVEQAVNAALDRTFQDAEALLLSRLGAVTLA 129
Query: 129 CLVRNRSSIKKIFNA 143
L ++K A
Sbjct: 130 ML---GDDLRKRLGA 141
>gi|254303065|ref|ZP_04970423.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323257|gb|EDK88507.1| possible transcriptional regulator [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 142
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/133 (24%), Positives = 60/133 (45%), Gaps = 9/133 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + + ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDRNRIVTSAEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SC-GLTSVLRKALNA 117
GG +L + IT+ D V+ E+ + C + SC + L K N
Sbjct: 61 ANGGYKLNKEPKDITLRDAVETIEDEIII------KDRSCVVGQTSCSIIFKALEKVENN 114
Query: 118 FFDVLTQYSIECL 130
F L + + + L
Sbjct: 115 FLSNLEKVNFQEL 127
>gi|15612869|ref|NP_241172.1| hypothetical protein BH0306 [Bacillus halodurans C-125]
gi|10172919|dbj|BAB04025.1| BH0306 [Bacillus halodurans C-125]
Length = 143
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L + A + IA + + + + I+ L KA ++ G
Sbjct: 1 MKQISSRFSIAVHILTFIASVREG-CTGDFIAGSVNSNPVIVRNIMGMLKKADLIGVRPG 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG L + AD+IT+LDV +A + + F + KI+C + L L++A
Sbjct: 60 V-GGAYLKKDADEITLLDVYRAVDVIGDDQLF-GFHNPKIECEVGRIIENTLREELKQAQ 117
Query: 116 NAFFDVLTQYSIECLVRNRS 135
A L +I+ L+
Sbjct: 118 EAMEQRLQLVTIQQLLDQPE 137
>gi|167950664|ref|ZP_02537738.1| Iron-sulphur cluster assembly transcription factor IscR [Endoriftia
persephone 'Hot96_1+Hot96_2']
Length = 108
Score = 70.7 bits (172), Expect = 7e-11, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+RG GG L R A +I I +V+ A +ES C +H +C C +
Sbjct: 1 MRGPGGGYSLGREAAEIFIGEVITAVDESMDTTRCHGAH--NCQNNDRCLTHDLWADLSE 58
Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
+ L + S++ L+ +R ++K++
Sbjct: 59 QIYHYLNRISLQDLM-DRKAVKEV 81
>gi|238855802|ref|ZP_04646094.1| rrf2 family protein [Lactobacillus jensenii 269-3]
gi|260665236|ref|ZP_05866085.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
gi|282933517|ref|ZP_06338889.1| transcriptional regulator [Lactobacillus jensenii 208-1]
gi|313472788|ref|ZP_07813276.1| Rrf2 family protein [Lactobacillus jensenii 1153]
gi|238831578|gb|EEQ23923.1| rrf2 family protein [Lactobacillus jensenii 269-3]
gi|239529039|gb|EEQ68040.1| Rrf2 family protein [Lactobacillus jensenii 1153]
gi|260560973|gb|EEX26948.1| transcriptional regulator [Lactobacillus jensenii SJ-7A-US]
gi|281302363|gb|EFA94593.1| transcriptional regulator [Lactobacillus jensenii 208-1]
Length = 150
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + +A + + ++ KIL L +GI+ + +G+ G
Sbjct: 3 TKFAVALHILTMISEETSK-LSSQTLANSVGTNASYIRKILALLKNSGIITSHQGK-TGY 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
+L R +QI++L + A +E + + CP+ + + +
Sbjct: 61 QLTRLPEQISLLTIYLAIQESDHIHLFAVHQNANPKCPVGKYIESAMRPLFADIEVQLAE 120
Query: 121 VLTQYSIECLVRN 133
L + +++ ++ N
Sbjct: 121 ALRRQTLKDVIDN 133
>gi|118586565|ref|ZP_01544007.1| transcriptional regulator, Rrf2 family [Oenococcus oeni ATCC
BAA-1163]
gi|118433006|gb|EAV39730.1| transcriptional regulator, Rrf2 family [Oenococcus oeni ATCC
BAA-1163]
Length = 146
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 67/143 (46%), Gaps = 5/143 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
T+ +D +L+Y A+H + + S+IA + + + +I+ L KA ++ V+G
Sbjct: 4 TQLSD-ATHILVYIALHKNKQSVKSSEIAVSLQTAPSLVRRIMSKLKKAHLLNAVQGSPQ 62
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
L + A+QIT+ ++ A + + + + CP+ + L R+ A
Sbjct: 63 P-VLAKAAEQITLQEIYLAVSQKRNLLNVDQNTDMLCPIGTAIPKVLDHYYREIQTAAEM 121
Query: 121 VLTQYSIECLVRNRSSIKKIFNA 143
+ + +++ ++ + +K F++
Sbjct: 122 KMAEITLQDIINDTKVQEKQFDS 144
>gi|78063394|ref|YP_373302.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. 383]
gi|77971279|gb|ABB12658.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia sp. 383]
Length = 163
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 29/134 (21%), Positives = 58/134 (43%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ D P IA C + + + ++L L G V++ +G
Sbjct: 23 RLSRM----LHALIHM-DQVDGPMTSEAIATMLCTNPVVVRRLLGGLRDRGYVQSEKGHG 77
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E ++ + +C + + L++ L++A
Sbjct: 78 GGWVLSVALDDITLLDVYRAVGEPPLFSDLVTDDEAECLVEQAVNAHLSATLKEAETTLL 137
Query: 120 DVLTQYSIECLVRN 133
+ ++ L R+
Sbjct: 138 ARFGEVTLGMLSRD 151
>gi|282897323|ref|ZP_06305325.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
D9]
gi|281197975|gb|EFA72869.1| Transcriptional Regulator, BadM/Rrf2 family [Raphidiopsis brookii
D9]
Length = 160
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 5/111 (4%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
I+ IA I E +L +IL L +AGIV++ RG +GG L R +I++L++V E
Sbjct: 44 LTINDIAAKQPIPERYLEQILTQLRRAGIVQSQRGSKGGFLLVREPWEISLLEIVTLIEG 103
Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
+ + + +A A +VL +Y+++ L + R
Sbjct: 104 ERN-----EKRNAKVLTIEKSLVWEIWERANIASVEVLGRYTLQDLCQERE 149
>gi|75911214|ref|YP_325510.1| BadM/Rrf2 family transcriptional regulator [Anabaena variabilis
ATCC 29413]
gi|75704939|gb|ABA24615.1| transcriptional regulator, BadM/Rrf2 family [Anabaena variabilis
ATCC 29413]
Length = 156
Score = 70.3 bits (171), Expect = 7e-11, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 5/116 (4%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
P +S I+ I E +L +IL L +AG+V++ RG RGG L R Q+T+L+VV
Sbjct: 36 QKTPTTMSDISAKHPIPERYLEQILSSLRRAGVVQSQRGSRGGFVLTREPRQLTLLEVVI 95
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
+ + + + ++A A ++L+QY+I+ L R +
Sbjct: 96 MLDGEQK-----EKESPSEENLEKSLVCEIWQQADVAAQNILSQYTIQDLCDQREA 146
>gi|163731797|ref|ZP_02139244.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
gi|161395251|gb|EDQ19573.1| transcriptional regulator, putative [Roseobacter litoralis Och 149]
Length = 147
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/124 (22%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ D + IA IS +L ++ L +A +V +VRG GG RL R
Sbjct: 3 ALADIAMQPGDKLVSLGDIATRQAISLAYLEQLFVKLRRADLVTSVRGPGGGYRLKRSPS 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECL 130
I +++++ A +E+ A + LT+ + + L Q + +
Sbjct: 63 DIRVVEILSAVDETVDAMHKGAGASGGASGSQAQSLTNRLWESLSAHVYVFLHQTRLSDV 122
Query: 131 VRNR 134
+ N
Sbjct: 123 IANE 126
>gi|317496580|ref|ZP_07954929.1| transcriptional regulator [Gemella moribillum M424]
gi|316913383|gb|EFV34880.1| transcriptional regulator [Gemella moribillum M424]
Length = 167
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 8/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MHLTK T+ I +++ + + + +I++ IS +L KI++ LV +V+ G
Sbjct: 1 MHLTKSTEQAICIMVMLYLQDRHVFLNSKEISQRLNISPTYLKKIMRKLVLHDLVKANTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKI---DCPLVGSCGLTSVLRK--- 113
GG + + ++++ D+ A + + + L L K
Sbjct: 61 VGGGYKY-KANKKVSLYDIYVALNGEVEIFVLKTDYVSKIFEGALAVDKRYKKYLNKVNS 119
Query: 114 ALNAFFDVLTQYSIECLVRN 133
+ L + +I+ LV +
Sbjct: 120 INQSIKKSLEEITIDNLVED 139
>gi|116334323|ref|YP_795850.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
gi|116099670|gb|ABJ64819.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
ATCC 367]
Length = 140
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ +D I VL Y A D +A + S + KIL L + G+V +
Sbjct: 4 TRLSD-TIHVLTYIAYFKDQKITSQAMASSLQTSPSLVRKILANLKRGGLVCPGQA-TTH 61
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
V L +PA +IT+ D+ + + + DCP+ + L + A D
Sbjct: 62 VSLAKPAAEITMRDIYRTLPDRGPLLNVDTKTNEDCPVGAAVPVALNRYYAEIQAAAEDR 121
Query: 122 LTQYSIECLVRN 133
+ + +++ ++ +
Sbjct: 122 MARITLQDILAD 133
>gi|304407124|ref|ZP_07388778.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304344111|gb|EFM09951.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 139
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 31/140 (22%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ R I +L + ++ + IA + + + + +I+ L KAG++E+ G
Sbjct: 2 ISSRFTVAIHILALIEM-SEGSITSAYIAGSVNTNPVVIRRIMSLLSKAGLIESRPGV-T 59
Query: 63 GVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
G++L RP + IT LDV +A E+ + + C + + L L +A
Sbjct: 60 GMKLVRPLESITFLDVYRAVEVPENDVLFAIHQNSNPQCVVGRNVQNALEEPLLEAQRQM 119
Query: 119 FDVLTQYSIECLVRNRSSIK 138
L ++ +VR S +
Sbjct: 120 ELSLANTTVAQVVRQMESKQ 139
>gi|13471616|ref|NP_103182.1| transcriptional regulator [Mesorhizobium loti MAFF303099]
gi|14022358|dbj|BAB48968.1| probable transcriptional regulator [Mesorhizobium loti MAFF303099]
Length = 174
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 37/143 (25%), Positives = 64/143 (44%), Gaps = 7/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + I A + + + +AE +S +L K L L A I+E+V G
Sbjct: 1 MKLGEGVEAAIHCTATLASVEGNSTMPGAALAECFGLSASYLLKHLNMLTAASILESVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113
GG RL R A++IT+LD+V A E C + + + CG+ + + K
Sbjct: 61 PAGGYRLARAAERITLLDIVLAIEGREPAFRCGEIRRNGPVKIDASAYVKPCGINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSS 136
A A+ L + + +V + ++
Sbjct: 121 AERAYRAALAEVKLSDIVADYAA 143
>gi|126456922|ref|YP_001075296.1| transcriptional regulator [Burkholderia pseudomallei 1106a]
gi|167827792|ref|ZP_02459263.1| transcriptional regulator [Burkholderia pseudomallei 9]
gi|217419315|ref|ZP_03450822.1| transcriptional regulator [Burkholderia pseudomallei 576]
gi|242311392|ref|ZP_04810409.1| transcriptional regulator [Burkholderia pseudomallei 1106b]
gi|254190011|ref|ZP_04896520.1| transcriptional regulator [Burkholderia pseudomallei Pasteur 52237]
gi|126230690|gb|ABN94103.1| transcriptional regulator [Burkholderia pseudomallei 1106a]
gi|157937688|gb|EDO93358.1| transcriptional regulator [Burkholderia pseudomallei Pasteur 52237]
gi|217398619|gb|EEC38634.1| transcriptional regulator [Burkholderia pseudomallei 576]
gi|242134631|gb|EES21034.1| transcriptional regulator [Burkholderia pseudomallei 1106b]
Length = 153
Score = 70.3 bits (171), Expect = 8e-11, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + +T L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 AHFGAITVGDLARD 134
>gi|53717100|ref|YP_105929.1| hypothetical protein BMAA1311 [Burkholderia mallei ATCC 23344]
gi|124381671|ref|YP_001024383.1| transcriptional regulator [Burkholderia mallei NCTC 10229]
gi|126447815|ref|YP_001078192.1| transcriptional regulator [Burkholderia mallei NCTC 10247]
gi|254174401|ref|ZP_04881063.1| transcriptional regulator [Burkholderia mallei ATCC 10399]
gi|254356988|ref|ZP_04973263.1| transcriptional regulator [Burkholderia mallei 2002721280]
gi|52423070|gb|AAU46640.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344]
gi|124289691|gb|ABM98960.1| transcriptional regulator [Burkholderia mallei NCTC 10229]
gi|126240669|gb|ABO03781.1| transcriptional regulator [Burkholderia mallei NCTC 10247]
gi|148026015|gb|EDK84138.1| transcriptional regulator [Burkholderia mallei 2002721280]
gi|160695447|gb|EDP85417.1| transcriptional regulator [Burkholderia mallei ATCC 10399]
Length = 153
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + +T L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLARD 134
>gi|255004297|ref|ZP_05279098.1| Putative cystine defulfurase (nifS-like protein) [Anaplasma
marginale str. Virginia]
Length = 506
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
P R S IA+ +SE +L +++ L G+V++ RG GG L P + IT+ ++ +
Sbjct: 15 QPKRASSIADKQSLSEGYLERVITSLKNKGLVKSTRGPGGGYSLGMPPEHITLDLLLDSV 74
Query: 83 EESFFVAECFASHKIDCPLVG-SCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ + C + P G C ++ L SI + N
Sbjct: 75 GDKVRMVRCGSERGGCLPFPGVRCNSHNLWDGIERYVMHYLKNTSILDVFNNN 127
>gi|307313736|ref|ZP_07593354.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
gi|306899226|gb|EFN29863.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
Length = 135
Score = 70.3 bits (171), Expect = 9e-11, Method: Composition-based stats.
Identities = 28/130 (21%), Positives = 52/130 (40%), Gaps = 5/130 (3%)
Query: 7 TDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
T + VL++ + IA+ + + + + + L + GIV + GR GG
Sbjct: 4 TRLARMLHVLVHMHLLGGGE-TSETIAKMLNTNPVVVRRTMAALKEKGIVTSAGGRSGGW 62
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
R+ + AD+IT+ V A + + + CP+ G+ L + A A
Sbjct: 63 RIAKGADEITVEQVHDALQTGSAFSIALSRDHSTCPVEGAVNTFLDQAMADAERALRTRF 122
Query: 123 TQYSIECLVR 132
+I+ L
Sbjct: 123 AGTTIQDLAN 132
>gi|222102654|ref|YP_002539693.1| hypothetical protein Avi_7313 [Agrobacterium vitis S4]
gi|221739255|gb|ACM39988.1| conserved hypothetical protein [Agrobacterium vitis S4]
Length = 172
Score = 69.9 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 61/136 (44%), Gaps = 3/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L ++++ I +L CA +A+ + ++++ LV+ G + + RG
Sbjct: 1 MRLKRQSEIAIGILTVCAKSPSTKYPAQHLAQEVGATRDHAYQVVALLVRNGFLNSDRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG+RL R A I + DV++ T+ + A L G L ++ A +
Sbjct: 61 GGGLRLARDAKDIKLADVLRITQPEL---DGNAEEPEPGTLKGQPLLDGIVAAASSFLVS 117
Query: 121 VLTQYSIECLVRNRSS 136
+L ++++ LV + S
Sbjct: 118 LLDRFTVADLVASPDS 133
>gi|154251426|ref|YP_001412250.1| BadM/Rrf2 family transcriptional regulator [Parvibaculum
lavamentivorans DS-1]
gi|154155376|gb|ABS62593.1| transcriptional regulator, BadM/Rrf2 family [Parvibaculum
lavamentivorans DS-1]
Length = 154
Score = 69.9 bits (170), Expect = 9e-11, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ H D P +A A + + + +I+ L +AG V + +G GG +
Sbjct: 11 LHVLLHMDAH-DAPMTSEVLAGAMQTNPVVIRRIMAGLREAGYVRSEKGHGGGWSIACDL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ +A +A + C + + LT +A L ++
Sbjct: 70 KAVTLRDIHEALGGPSLLAIGNRTEAPGCLVEQAVNAALTQAFDEAEALLLKRLGGVTLA 129
Query: 129 CLVRN 133
L R+
Sbjct: 130 ALARD 134
>gi|117920979|ref|YP_870171.1| BadM/Rrf2 family transcriptional regulator [Shewanella sp. ANA-3]
gi|117613311|gb|ABK48765.1| transcriptional regulator, BadM/Rrf2 family [Shewanella sp. ANA-3]
Length = 137
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 23/130 (17%), Positives = 57/130 (43%), Gaps = 4/130 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
++ + + +L++ ++AE + + + + + L G V + +G GG
Sbjct: 5 SRLSRV-LHILVHLDAFATQ-LTSEKMAEMIGTNPVVVRRTMALLRDQGYVTSSKGHAGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALNAFFDV 121
L +P +IT+L++ +A +S F +CP+ + L V+++A +
Sbjct: 63 WALAKPLAKITLLEIHQALGDSAFFTIGLTDEHNNCPIEIAVNDALKDVMQEAESLLLQR 122
Query: 122 LTQYSIECLV 131
+ +++ L
Sbjct: 123 FGEITLDKLA 132
>gi|325291672|ref|YP_004277536.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
H13-3]
gi|325059525|gb|ADY63216.1| transcriptional regulator, BadM/Rrf2 family [Agrobacterium sp.
H13-3]
Length = 152
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/132 (18%), Positives = 51/132 (38%), Gaps = 4/132 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ + + +L++ H + IA + + + + + L + G V + +G GG
Sbjct: 5 TRLSRV-LHILIHMEKH-EGAATSESIAAMLQTNPVVVRRTMAGLREHGYVSSEKGHGGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDV 121
L RP +IT+LD+ +A + A +C + + L + +A
Sbjct: 63 WVLARPLSEITLLDIYRALGAPELFSIGLAGDNPNCVIEQAVNAALFDAMNEAETILLSR 122
Query: 122 LTQYSIECLVRN 133
++ L
Sbjct: 123 FGNITLSVLAEE 134
>gi|308069350|ref|YP_003870955.1| transcriptional regulator [Paenibacillus polymyxa E681]
gi|305858629|gb|ADM70417.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
Length = 144
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 7/138 (5%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L + + +IA + + + + +I+ L KAG +ET G
Sbjct: 1 MKQISSRFSMAVHILSMITLDP-IYSTGDRIARSINSNPVVIRRIMAQLKKAGYIETKPG 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
G L +++T+L++ +A E + + + +C + + L L A
Sbjct: 60 V-SGASLLISPERLTLLNIFQAVESVDGNQLFKIHKDADPNCSVGMNIESILLPQLSNAQ 118
Query: 116 NAFFDVLTQYSIECLVRN 133
A L ++ +V
Sbjct: 119 KAMEHELASVTLAQIVEQ 136
>gi|167723275|ref|ZP_02406511.1| transcriptional regulator [Burkholderia pseudomallei DM98]
gi|167849266|ref|ZP_02474774.1| transcriptional regulator [Burkholderia pseudomallei B7210]
gi|167897870|ref|ZP_02485272.1| transcriptional regulator [Burkholderia pseudomallei 7894]
gi|167914532|ref|ZP_02501623.1| transcriptional regulator [Burkholderia pseudomallei 112]
gi|167922427|ref|ZP_02509518.1| transcriptional regulator [Burkholderia pseudomallei BCC215]
gi|237508735|ref|ZP_04521450.1| transcriptional regulator [Burkholderia pseudomallei MSHR346]
gi|235000940|gb|EEP50364.1| transcriptional regulator [Burkholderia pseudomallei MSHR346]
Length = 153
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + +T L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLARD 134
>gi|320450833|ref|YP_004202929.1| BadM/Rrf2 family transcriptional regulator [Thermus scotoductus
SA-01]
gi|320151002|gb|ADW22380.1| transcriptional regulator, BadM/Rrf2 family [Thermus scotoductus
SA-01]
Length = 139
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
+ ++IA F+ K+L L KAG+VE+ GR GGV L P + IT+L V++
Sbjct: 21 EEPGLSAAEIAAKLKAPPAFMAKVLSKLAKAGLVESRMGRAGGVWLKAPPEGITLLKVME 80
Query: 81 ATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
+ + C G C L L + L +++ L+ S
Sbjct: 81 SLSGPVALDLCATLKRCPTEERRGFCYLKPNLVRMNQEIRKALEGLTLKDLLPEASK 137
>gi|126442914|ref|YP_001062331.1| DNA-binding protein [Burkholderia pseudomallei 668]
gi|126222405|gb|ABN85910.1| DNA-binding protein [Burkholderia pseudomallei 668]
Length = 153
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + +T L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLARD 134
>gi|325289388|ref|YP_004265569.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
glycolicus DSM 8271]
gi|324964789|gb|ADY55568.1| transcriptional regulator, BadM/Rrf2 family [Syntrophobotulus
glycolicus DSM 8271]
Length = 155
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R + +LM A D S ++++ ++ + + I L KA I++ G
Sbjct: 1 MRASTRFAIAVHILMLTAAFQDKYKITSSMLSDSTGVNAVIIRNIFSKLKKAKIIQVSPG 60
Query: 60 RRGGVRLCRPADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCGLTSVLRK---- 113
G++L + +QI++ D+ EE V + DCP+ S +T +L K
Sbjct: 61 -TSGIKLIKKPEQISLFDIYATVEIEEPINVLSIHQNIPCDCPIGIS--VTDILMKHFIT 117
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A + L++ S+ L+
Sbjct: 118 AATAMENELSKVSLLDLLNE 137
>gi|239636705|ref|ZP_04677707.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri
L37603]
gi|239598060|gb|EEQ80555.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus warneri
L37603]
Length = 158
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/149 (22%), Positives = 63/149 (42%), Gaps = 7/149 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++K + GI VL+ A + + ++E +S+ L KIL+ LV A ++ +
Sbjct: 1 MKISKHFEQGIYVLLILATQENQGAVKSQTLSEKLEVSDSSLKKILRKLVVANLITSNAS 60
Query: 60 RRGGVRLCRPADQITILDVVKAT-EESFFVAECFASH-----KIDCPLVGSCGLTSVLRK 113
+ GG +L + + IT+ DV++A E + L
Sbjct: 61 KDGGFQLNQSIEDITLKDVIEAISNGDVIEFEISHLSRRIFFNDQHIKDSEIKVKQQLND 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
A+ AF + L + S+ L+ + K+ +
Sbjct: 121 AIQAFNEKLDELSLVELLEDEYFKHKLVD 149
>gi|116619016|ref|YP_819387.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
gi|116097863|gb|ABJ63014.1| transcriptional regulator, BadM/Rrf2 family [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 150
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + VL+ A+ D P + ++E +SE +L K ++ LV A +++ +
Sbjct: 1 MKMSSAVEQSLVVLVMLALQKDGLPVKSHVLSEHLEVSESYLKKTMRKLVVANLIKAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLR---KA 114
+ GG +L R + IT+LDV +A E A + G VL +A
Sbjct: 61 KEGGFKLARNTNDITLLDVYEAIEGEDSFIHSTQLADRVFPAKTAVAEGTKEVLSIVYEA 120
Query: 115 LNAFFDVLTQYSIECLV 131
F L + SI L+
Sbjct: 121 EKDFKKRLKRTSIADLL 137
>gi|329114382|ref|ZP_08243144.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001]
gi|326696458|gb|EGE48137.1| HTH-type transcriptional regulator IscR [Acetobacter pomorum DM001]
Length = 149
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ +++ A H + IAE ++ + +LQ L ++G++E++RG RGG RL
Sbjct: 11 AVLIMLDVAFHAGRSGTVSAADIAERSELARRGIEPLLQALSRSGLLESIRGPRGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
RP I ++D+++A + A + ++ C K + + ++
Sbjct: 71 RPRRDIALVDIIEAVLNTDTDANDGPQGALFQKVLAPC-----WDKFDQKLITQMGKTTL 125
Query: 128 ECLVRNRSS 136
+ LV+ S
Sbjct: 126 DDLVKQAES 134
>gi|104773289|ref|YP_618269.1| putative transcriptional regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116513261|ref|YP_812167.1| transcriptional regulator [Lactobacillus delbrueckii subsp.
bulgaricus ATCC BAA-365]
gi|103422370|emb|CAI96892.1| Putative transcriptional regulator [Lactobacillus delbrueckii
subsp. bulgaricus ATCC 11842]
gi|116092576|gb|ABJ57729.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus
delbrueckii subsp. bulgaricus ATCC BAA-365]
Length = 136
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 24/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ +L Y I D IA + + + ++ L KAG ++T +G L +
Sbjct: 4 AVHLLAYIEIFPDDDLSSRAIARSIVTNPSMVRSLMMDLRKAGFLKTKQGSAEP-ELAKK 62
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSI 127
++I++ D+ A + + CP+ G+ L + A F + + S+
Sbjct: 63 PEEISLYDIFAAVGMEHHLLHVDEDTEQKCPVGGNIQGPLAKAYAEVEEAAFAKMREISL 122
Query: 128 ECLVRN 133
+V
Sbjct: 123 REIVDQ 128
>gi|224541787|ref|ZP_03682326.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM
15897]
gi|224525284|gb|EEF94389.1| hypothetical protein CATMIT_00959 [Catenibacterium mitsuokai DSM
15897]
Length = 140
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 55/134 (41%), Gaps = 4/134 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+T + L+Y + D ++A+ C + + +++ L +AG+++ G
Sbjct: 5 RMTSDFSIAVHALVYLGKNQD-LISSDELAKHICTHPVRVRRVMIKLREAGLIKAKAGVD 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG---LTSVLRKALNAF 118
GG RL + AD IT+ ++ K+ + + S + S+ A
Sbjct: 64 GGYRLDKEADDITLSEIAKSVSNDYIHVTWHNGEDGREAIKDSKVEQAIDSIFVDLNEAC 123
Query: 119 FDVLTQYSIECLVR 132
++L +IE ++
Sbjct: 124 DNLLKNKTIEDIMN 137
>gi|167906209|ref|ZP_02493414.1| transcriptional regulator [Burkholderia pseudomallei NCTC 13177]
Length = 153
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHMER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + +T L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLARD 134
>gi|121596479|ref|YP_989904.1| transcriptional regulator [Burkholderia mallei SAVP1]
gi|238561365|ref|ZP_00442000.2| transcriptional regulator [Burkholderia mallei GB8 horse 4]
gi|251767118|ref|ZP_02266036.2| transcriptional regulator [Burkholderia mallei PRL-20]
gi|254200768|ref|ZP_04907133.1| transcriptional regulator [Burkholderia mallei FMH]
gi|254204740|ref|ZP_04911093.1| transcriptional regulator [Burkholderia mallei JHU]
gi|121224277|gb|ABM47808.1| transcriptional regulator [Burkholderia mallei SAVP1]
gi|147748380|gb|EDK55455.1| transcriptional regulator [Burkholderia mallei FMH]
gi|147754326|gb|EDK61390.1| transcriptional regulator [Burkholderia mallei JHU]
gi|238524554|gb|EEP87986.1| transcriptional regulator [Burkholderia mallei GB8 horse 4]
gi|243063862|gb|EES46048.1| transcriptional regulator [Burkholderia mallei PRL-20]
Length = 172
Score = 69.9 bits (170), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 54/134 (40%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 25 RLSRM----LHVLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 79
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A E + + + DC + +T L +A
Sbjct: 80 GGWELVCDLDAITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLL 139
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 140 ARFGAITVGDLARD 153
>gi|319782786|ref|YP_004142262.1| Rrf2 family transcriptional regulator [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317168674|gb|ADV12212.1| transcriptional regulator, Rrf2 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 167
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + I A + + + +AEA +S +L K L L A ++E+V G
Sbjct: 1 MKLGEGVEAAIHCAATLASVEGNSTMPGAALAEAFGLSPSYLLKHLNMLSAARVLESVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS------CGLTSVLRK 113
GG RL RPA++IT+LD+V A E C + + + CG+ + + K
Sbjct: 61 PAGGYRLARPAERITLLDIVLAVEGREPAFRCGEIRQRGPVKLDASAYVKPCGINAAMLK 120
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A+ L + + +V
Sbjct: 121 AERAYRAALAETKLSDIVA 139
>gi|270283926|ref|ZP_06193753.1| Rrf2 family protein [Bifidobacterium gallicum DSM 20093]
gi|270277715|gb|EFA23569.1| Rrf2 family protein [Bifidobacterium gallicum DSM 20093]
Length = 156
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + V++ +++ D+ + +A++ + + + +++Q L ++ RG
Sbjct: 15 MQISSRFTMAVHVMVAIDVYSSDHKVTSTFLAKSVNANPVIIRRLIQQLKNDDLITVTRG 74
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----K 113
GG L R IT+LD+ A E + + + P+ + VL +
Sbjct: 75 A-GGAVLARDPQDITLLDIFDAVEAVDDAGLFNFHDNPGRSEPVGRH--IHDVLDVRLDR 131
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A L ++ L ++
Sbjct: 132 VHAAMERELQSMTVADLAQH 151
>gi|313115924|ref|ZP_07801351.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
gi|310621688|gb|EFQ05216.1| Rrf2 family protein [Faecalibacterium cf. prausnitzii KLE1255]
Length = 146
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG
Sbjct: 4 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSCGLTSVLRKALNAF 118
GG L D ++ D++ E + C G C + L
Sbjct: 62 LGGCELSCDLDATSLYDLMVVVGERGILCACMEPGYECRWHDKHGRCAIHCQLAALQQKQ 121
Query: 119 FDVLTQYSI 127
+ S+
Sbjct: 122 DEAFRAVSL 130
>gi|260662247|ref|ZP_05863143.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
gi|260553630|gb|EEX26522.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
Length = 151
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R I ++++ A D + IA++ ++ + +I+ L + I+++V G
Sbjct: 1 MKYSTRFSDAIHIVVFIAAGGSDGDLSSAAIAKSLNKNQTQVRQIMAQLKRHHILDSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+L + ++ + + +A + + +C + L + + A
Sbjct: 61 HVCP-QLVKDPAELDLATIYQAVDGG-DLLHFNNETNTECRIGEGMPDALDLIFGQVQRA 118
Query: 118 FFDVLTQYSIECL 130
L YSI +
Sbjct: 119 ALAKLATYSIRDV 131
>gi|254454314|ref|ZP_05067751.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter
antarcticus 238]
gi|198268720|gb|EDY92990.1| transcriptional regulator, BadM/Rrf2 family [Octadecabacter
antarcticus 238]
Length = 142
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 13 VLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + +++ +S +L ++ L +AG+VE+VRG GG RL R
Sbjct: 3 ALADIALQPVGTLVSLGELSRRQDVSLPYLEQLFVKLRRAGLVESVRGPGGGYRLARRTS 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSC-GLTSVLRKALNAFFDVLTQYSIECL 130
I +++++ A +E+ A + + + L Q + +
Sbjct: 63 DIRVVEILSAVDETVSAMHQGAGASGGSSGSRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRN 133
V N
Sbjct: 123 VDN 125
>gi|299537227|ref|ZP_07050530.1| YwnA [Lysinibacillus fusiformis ZC1]
gi|298727468|gb|EFI68040.1| YwnA [Lysinibacillus fusiformis ZC1]
Length = 137
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 4/134 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ R I +L A +D IA + + + + +++ L KAG++ + G
Sbjct: 2 VNSRFSVAIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLSSHSG-M 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
G L +T+L + +A + + C + L V A
Sbjct: 61 AGYELLVEPKDLTLLAIYQAIDGPEQLFAIHDEPNPACAVGQKIQHTLEGVYTSVWLAMK 120
Query: 120 DVLTQYSIECLVRN 133
+ L +++ ++
Sbjct: 121 EQLQAQTLQDVLDQ 134
>gi|291562340|emb|CBL41156.1| Predicted transcriptional regulator [butyrate-producing bacterium
SS3/4]
Length = 143
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG
Sbjct: 1 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNA 117
GG L D ++ D++ E + C +C G C + L
Sbjct: 59 LGGCALSCDLDATSLYDLMGVVGERGILCACMEPG-YECRWQDKHGRCAIHCQLAALQQK 117
Query: 118 FFDVLTQYSI 127
+ S+
Sbjct: 118 QDEAFRAVSL 127
>gi|83717641|ref|YP_439674.1| transcriptional regulator family protein [Burkholderia
thailandensis E264]
gi|83651466|gb|ABC35530.1| Transcriptional regulator family [Burkholderia thailandensis E264]
Length = 172
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 25 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 79
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D +T+LDV +A + + + + DC + + L +A
Sbjct: 80 GGWELACELDAMTLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALNEAETLLL 139
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 140 ARFGAITVGDLARD 153
>gi|89096880|ref|ZP_01169771.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
gi|89088260|gb|EAR67370.1| transcriptional regulator [Bacillus sp. NRRL B-14911]
Length = 141
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 56/129 (43%), Gaps = 8/129 (6%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ L+ A + + +++A+ FL KIL+ LVK G+V+ GR GG L +P
Sbjct: 17 ALQALLIMADN-EGLCPSARLADKIGSESGFLRKILRNLVKEGLVQAKEGRDGGYFLAKP 75
Query: 70 ADQITILDV---VKATEESFFVAECFASHK-IDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ I + DV ++A S + + C GL + + L +
Sbjct: 76 PEDIRLSDVYAGMRAEPFSKGFLDVSSKECFEPCTRSALSGLK---NEMEQWILNGLEEK 132
Query: 126 SIECLVRNR 134
+++ L+ +
Sbjct: 133 TLKDLMGKK 141
>gi|15964112|ref|NP_384465.1| hypothetical protein SMc01160 [Sinorhizobium meliloti 1021]
gi|307301257|ref|ZP_07581019.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
gi|307317928|ref|ZP_07597365.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|15073288|emb|CAC41796.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|306896330|gb|EFN27079.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
AK83]
gi|306903713|gb|EFN34300.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium meliloti
BL225C]
Length = 152
Score = 69.6 bits (169), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/135 (20%), Positives = 50/135 (37%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L++ A ++A + + + + + L +AG+V + RG
Sbjct: 1 MKRDSRLSITLHALLHMAER--ETITSEELAACLSTNPVVVRRTMAGLREAGLVRSERGH 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L R I++ DV A E A + C + + + LR A
Sbjct: 59 GGGWSLVRDLATISLADVHAALGEPAVFAIGNRTEAPGCVVEQAVNAAMDGALRDAEALL 118
Query: 119 FDVLTQYSIECLVRN 133
L + S+ L +
Sbjct: 119 MQRLERISLADLSND 133
>gi|146317974|ref|YP_001197686.1| transcriptional regulator [Streptococcus suis 05ZYH33]
gi|146320161|ref|YP_001199872.1| transcriptional regulator [Streptococcus suis 98HAH33]
gi|145688780|gb|ABP89286.1| Predicted transcriptional regulator [Streptococcus suis 05ZYH33]
gi|145690967|gb|ABP91472.1| Predicted transcriptional regulator [Streptococcus suis 98HAH33]
gi|292557757|gb|ADE30758.1| Predicted transcriptional regulator [Streptococcus suis GZ1]
Length = 152
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +AE+ + ++ K++ L AG++ + +GR G
Sbjct: 12 TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGR-SGY 69
Query: 65 RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
+L + I++L++ AT+ E + + + + CP+ + + +
Sbjct: 70 QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLSCPVGQHIEGAMVPIFSSVEQELEN 129
Query: 121 VLTQYSIECLVRN 133
L++ S++ ++ N
Sbjct: 130 QLSRQSLDNVITN 142
>gi|284029052|ref|YP_003378983.1| BadM/Rrf2 family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283808345|gb|ADB30184.1| transcriptional regulator, BadM/Rrf2 family [Kribbella flavida DSM
17836]
Length = 144
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 52/137 (37%), Gaps = 5/137 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M R L + + QIA + + + + ++L L +AG+VE+
Sbjct: 1 MSANSRLTIAAHTLAWIGLYQRQGHEVATSEQIAGSANTNPVVIRRLLGELREAGLVESR 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKAL 115
RG G L R IT+LDV A E A A+ C + L V
Sbjct: 61 RGAGAGWSLTRDLASITLLDVYDAIEPGPLFALHRANPDDGCVVGHGIQPALHDVYAGIE 120
Query: 116 NAFFDVLTQYSIECLVR 132
L++ ++E +++
Sbjct: 121 CTVRTELSKTTLEDVLQ 137
>gi|167621776|ref|YP_001676561.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
gi|167351517|gb|ABZ74247.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
Length = 141
Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 2/125 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
G+ ++ +H D S I E+ + +L L KAG+V T RGR G L R
Sbjct: 11 GVHIMQVLHVHADRKITSSFITESVNTDAGSVRLVLSKLAKAGLVTTTRGRGGSSALARA 70
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
AD IT+LD+ +AT A + C + ++ VL AF L + +
Sbjct: 71 ADTITMLDIYRATAAPAVFAVHGHPVEKTCVVSTHHKKTMSRVLEDCQGAFEASLARTRL 130
Query: 128 ECLVR 132
+V
Sbjct: 131 SDVVE 135
>gi|296117471|ref|ZP_06836058.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295975992|gb|EFG82783.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 140
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
I +++ A H + IA+ ++ + +LQ L ++G++E++RG RGG RL
Sbjct: 3 AILIMLDVAFHAGRNGTVSAADIADRANLARRGIEPLLQTLSRSGLLESIRGPRGGYRLG 62
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
RP I + D+++ + + ++ ++ C ++ + + ++
Sbjct: 63 RPRRDILLSDILEVVTADES-TDGGPTGQLFEKVIEPC-----WKELDDTVEKRCRKLTL 116
Query: 128 ECLVRNRS 135
+ LV+
Sbjct: 117 DDLVKRAE 124
>gi|84686886|ref|ZP_01014770.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Maritimibacter alkaliphilus HTCC2654]
gi|84665083|gb|EAQ11563.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Rhodobacterales bacterium HTCC2654]
Length = 143
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 2/124 (1%)
Query: 13 VLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + ++ ++E IS +L ++ L +A +VE+VRG GG L RP+
Sbjct: 3 ALAELALQPEGTRMSLTDLSERQKISLPYLEQLFVKLRRAELVESVRGPGGGYMLARPSS 62
Query: 72 QITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+I + +++ A +E+ + + + L Q + +
Sbjct: 63 EIRVAEILAAVDETVSAMHTGAGASGGKSGTRAQSMTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRNR 134
V N
Sbjct: 123 VHNE 126
>gi|239627045|ref|ZP_04670076.1| RRF2 family protein [Clostridiales bacterium 1_7_47_FAA]
gi|239517191|gb|EEQ57057.1| RRF2 family protein [Clostridiales bacterium 1_7_47FAA]
Length = 147
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 5/134 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + +++LM + D I+E+ + + + ++ L KAGI+ GR
Sbjct: 1 MRMSTQFTVTVQMLMMILVFKDKKMTSEMISESTGGNPIMVRQLFGKLKKAGILHVSTGR 60
Query: 61 RGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALN 116
G L R + I++ D+ A E + + + C + L L +A+
Sbjct: 61 -GATVLARNPEDISLWDIYMAVEGYDTNELFKFHPRISEGCQIGRFFKEILGVHLDEAVQ 119
Query: 117 AFFDVLTQYSIECL 130
A + + S+ L
Sbjct: 120 AMAEKMDAVSLAQL 133
>gi|89068825|ref|ZP_01156208.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Oceanicola granulosus HTCC2516]
gi|89045595|gb|EAR51658.1| iron-sulfur cluster assembly transcription factor IscR, putative
[Oceanicola granulosus HTCC2516]
Length = 143
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 13 VLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L A+ + +++ IS +L ++ L +AG+VE+VRG GG RL RPA
Sbjct: 3 ALADLALLPQGGLASLGEVSRRQDISLPYLEQLFVKLRRAGLVESVRGPGGGYRLARPAS 62
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS-VLRKALNAFFDVLTQYSIECL 130
+I + DV+ A +E+ A + LT+ + + L Q + +
Sbjct: 63 EIRVADVLGAVDETVSAMHKGAGASGGASGSRAQSLTNRLWEGLSAHVYVFLHQTRLSDV 122
Query: 131 VRN 133
V N
Sbjct: 123 VGN 125
>gi|223933381|ref|ZP_03625368.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
89/1591]
gi|302023354|ref|ZP_07248565.1| transcription regulation protein [Streptococcus suis 05HAS68]
gi|330832158|ref|YP_004400983.1| BadM/Rrf2 family transcriptional regulator [Streptococcus suis ST3]
gi|223897948|gb|EEF64322.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
89/1591]
gi|329306381|gb|AEB80797.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus suis
ST3]
Length = 143
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +AE+ + ++ K++ L AG++ + +GR G
Sbjct: 3 TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGR-SGY 60
Query: 65 RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
+L + I++L++ AT+ E + + + + CP+ + + +
Sbjct: 61 QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLTCPVGQHIEGAMVPIFSSVEQDLEN 120
Query: 121 VLTQYSIECLVRN 133
L++ S++ ++ N
Sbjct: 121 QLSRQSLDNVIDN 133
>gi|295103291|emb|CBL00835.1| Predicted transcriptional regulator [Faecalibacterium prausnitzii
SL3/3]
Length = 143
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 6/130 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG
Sbjct: 1 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC---PLVGSCGLTSVLRKALNA 117
GG L D ++ D++ E + C +C G C + L
Sbjct: 59 LGGCELSCDLDATSLYDLMGVVGERGILCACMEPG-YECRWQDKHGRCTIHCQLAALQQK 117
Query: 118 FFDVLTQYSI 127
+ S+
Sbjct: 118 QDEAFRAVSL 127
>gi|126650263|ref|ZP_01722491.1| YwnA [Bacillus sp. B14905]
gi|126592913|gb|EAZ86895.1| YwnA [Bacillus sp. B14905]
Length = 130
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Query: 10 GIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
I +L A +D IA + + + + +++ L KAG++ + G G L
Sbjct: 2 AIHILSLIATTSDKSLLTSDFIAGSVNTNPVVVRRMIGVLKKAGLLLSHSGV-AGYELLV 60
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
+T+L + +A + + C + L V A L +
Sbjct: 61 EPKNLTLLAIYQAIDGPEQLFAIHDEPNPACAVGREIQHTLEDVYTSIWQAMEAQLQAQT 120
Query: 127 IECLVRN 133
++ ++
Sbjct: 121 LQDVLDQ 127
>gi|253751196|ref|YP_003024337.1| transcription regulation protein [Streptococcus suis SC84]
gi|253753097|ref|YP_003026237.1| transcription regulation protein [Streptococcus suis P1/7]
gi|253754919|ref|YP_003028059.1| transcription regulation protein [Streptococcus suis BM407]
gi|251815485|emb|CAZ51063.1| putative transcription regulation protein [Streptococcus suis SC84]
gi|251817383|emb|CAZ55119.1| putative transcription regulation protein [Streptococcus suis
BM407]
gi|251819342|emb|CAR44712.1| putative transcription regulation protein [Streptococcus suis P1/7]
gi|319757466|gb|ADV69408.1| transcriptional regulator [Streptococcus suis JS14]
Length = 143
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 58/133 (43%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +AE+ + ++ K++ L AG++ + +GR G
Sbjct: 3 TKFSVALHILTMIS-ESKEILSSQALAESVGTNASYIRKVIALLKNAGLITSHQGR-SGY 60
Query: 65 RLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
+L + I++L++ AT+ E + + + + CP+ + + +
Sbjct: 61 QLSKSPKDISLLEIYLATQEVEHIRLFQIHQNANLSCPVGQHIEGAMVPIFSSVEQELEN 120
Query: 121 VLTQYSIECLVRN 133
L++ S++ ++ N
Sbjct: 121 QLSRQSLDNVITN 133
>gi|296110959|ref|YP_003621340.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154]
gi|295832490|gb|ADG40371.1| transcriptional regulator [Leuconostoc kimchii IMSNU 11154]
Length = 168
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + VL+ A+ D P + +++ +SE +L K ++ LV AGIV+ +
Sbjct: 1 MKMSNAVEQSLVVLVMLALQKDELPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-------CFASHKIDCPLVGSCG------ 106
+ GG +L RP QIT+LDV +A E F + K + +
Sbjct: 61 KEGGFKLARPVSQITLLDVYQAIEGMGSFIHSTQLADRIFLNQKSNKRIEDVQQALAVAT 120
Query: 107 --LTSVLRKALNAFFDVLTQYSIECLVRN 133
+ +V +A F + L Y+I L+++
Sbjct: 121 NDVLTVFNEAEQDFKNRLENYTIAKLLQH 149
>gi|299135050|ref|ZP_07028241.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
gi|298590027|gb|EFI50231.1| transcriptional regulator, BadM/Rrf2 family [Afipia sp. 1NLS2]
Length = 147
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ H P +A+ + + + + + L KAGIV + RG GG +
Sbjct: 11 LHALLHMIGH-GEPMTSEALAQCMDTNPVVVRRTMGLLRKAGIVTSARGHSGGWHIRADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
IT+ D+ E A + + +C + + L R+ + + ++
Sbjct: 70 GSITLRDLHHVLGEPAIFAIGNRNPEPECLVEQAVNAALDGAFRETEALLLERFAEVTLA 129
Query: 129 CLVRN 133
LV +
Sbjct: 130 DLVAD 134
>gi|226227480|ref|YP_002761586.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
gi|226090671|dbj|BAH39116.1| Rrf2 family DNA binding protein [Gemmatimonas aurantiaca T-27]
Length = 146
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 2/132 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ ++ +R ++ A H + +A+ +L K L L KAG+V + RG
Sbjct: 2 LSATAEHAMRAVLLLARHGNATALSADAMADQLGAPRNYLAKTLNALAKAGVVHSARGAA 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L P D +T+ ++ ++ V C + C + C L +
Sbjct: 62 GGFTLAVPPDVLTVQRIIAPFDDHSRVPACLLRNHA-CDSLNPCALHDRWNAIVGYAGRQ 120
Query: 122 LTQYSIECLVRN 133
++ L+ +
Sbjct: 121 FAVTTVADLLSD 132
>gi|15891276|ref|NP_356948.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str.
C58]
gi|15159651|gb|AAK89733.1| siderophore biosynthesis protein [Agrobacterium tumefaciens str.
C58]
Length = 173
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 23/142 (16%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MHL ++T+ +L CA + ++A+ ++ ++++ L + G++++ RG
Sbjct: 1 MHLKRQTEIAFGILAVCARQEGEIISVQKVAQEIGATKDHTYQVVALLARNGLLQSERGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--- 117
GG++L R + + +V++ + D + L + ++
Sbjct: 61 GGGLKLARDPRSVKLAEVLRLVQPELL------GEGADVLSSPQSETEAFLGRIVSTTSS 114
Query: 118 -FFDVLTQYSIECLVRNRSSIK 138
F +L ++++ L+ S+++
Sbjct: 115 FFARLLDRFTVADLIAPESNLR 136
>gi|228927217|ref|ZP_04090280.1| hypothetical protein bthur0010_19300 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
gi|228832543|gb|EEM78117.1| hypothetical protein bthur0010_19300 [Bacillus thuringiensis
serovar pondicheriensis BGSC 4BA1]
Length = 153
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 21/135 (15%), Positives = 53/135 (39%), Gaps = 3/135 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L + L+Y Q+++ C++ + + K+++ L K G++ T G
Sbjct: 16 QLNSEFIIAVHCLVYLNHVPGNMATSEQLSDNLCVNAVRIRKVMRMLKKKGLISTKEGFT 75
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSC--GLTSVLRKALNAF 118
GG ++T+ + + T + + + H + DC + +T + + +
Sbjct: 76 GGYIFKHNPKEVTLGQIYELTSNNSLASNWRSGHIEKDCVISSGIGQVMTDIFSEGDQCY 135
Query: 119 FDVLTQYSIECLVRN 133
L +++ +V
Sbjct: 136 KLFLDGINVQDVVEK 150
>gi|150021434|ref|YP_001306788.1| BadM/Rrf2 family transcriptional regulator [Thermosipho
melanesiensis BI429]
gi|149793955|gb|ABR31403.1| transcriptional regulator, BadM/Rrf2 family [Thermosipho
melanesiensis BI429]
Length = 148
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 3/140 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAE-ACCISELFLFKILQPLVKAGIVETVRG 59
M +T +++Y +R+L+ ++ + I++ I F KIL LV +GI+ + RG
Sbjct: 1 MAVTMKSEYALRLLLLLSLDEKLVSTRELISKCKADIPYEFAQKILSRLVSSGILSSSRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+ GG +L + +ITI D+V A ++ V CF C + + + + F
Sbjct: 61 KFGGYKLTKKPSEITIYDIVSAVDDISTVITCFVEPGKMKLEPEICTVNEIWQIVMEKFS 120
Query: 120 DVLTQYSIECLVRNRSSIKK 139
L ++E L +S +KK
Sbjct: 121 KSLMSVTLEDL--KKSYLKK 138
>gi|296115500|ref|ZP_06834133.1| Rrf2 family DNA binding protein [Gluconacetobacter hansenii ATCC
23769]
gi|295977983|gb|EFG84728.1| Rrf2 family DNA binding protein [Gluconacetobacter hansenii ATCC
23769]
Length = 150
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 3/122 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A P +A A + + + +++ L + G V + +G GG L
Sbjct: 11 LHVLLHMA-EAGGPMTSEALARALNTNPVVVRRLMGGLREHGYVHSEKGHGGGWTLSCQL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
D++T+ D+ +A + A S K +C + + ++ VL Q ++
Sbjct: 70 DRVTLRDIYEALDAPRLFAIGNRSEKTECLVEEAVNDAMSGVLADVTAQLLARFGQITLA 129
Query: 129 CL 130
L
Sbjct: 130 AL 131
>gi|160942852|ref|ZP_02090092.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii
M21/2]
gi|158445904|gb|EDP22907.1| hypothetical protein FAEPRAM212_00329 [Faecalibacterium prausnitzii
M21/2]
Length = 146
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 4/129 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TK TDY +R+L + + +++++E I F ++IL+ L +V RG
Sbjct: 4 MIITKETDYALRILRVL--LDGEKHSVAEMSETELIPNQFAYQILRKLSAGNLVRVSRGA 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASH--KIDCPLVGSCGLTSVLRKALNAF 118
GG L D ++ D++ E + C G C + L
Sbjct: 62 LGGCALSCDLDATSLYDLMGVVGERGILCACMEPGYKCRWQDKHGRCAIHCQLAALQQKQ 121
Query: 119 FDVLTQYSI 127
+ S+
Sbjct: 122 DEAFRAVSL 130
>gi|222053320|ref|YP_002535682.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
gi|221562609|gb|ACM18581.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. FRC-32]
Length = 146
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 2/133 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K + G+ ++ A + + IAE IS L K+++ LV G+V+ +RG
Sbjct: 1 MKLNKASLLGLIAVLELADDPEQQLSTTDIAEKYDISTHHLAKVMRNLVHKGVVQAMRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++ T+LD+++ E + K P++ L S+ + +
Sbjct: 61 GGGYRFAGNPNRTTLLDIIQLFETMESELDLPHWSKAADPIISE--LQSITNEIDDVTKA 118
Query: 121 VLTQYSIECLVRN 133
+L ++ ++N
Sbjct: 119 ILETITLSAALKN 131
>gi|167616242|ref|ZP_02384877.1| Transcriptional regulator family protein [Burkholderia
thailandensis Bt4]
gi|257142813|ref|ZP_05591075.1| transcriptional regulator family protein [Burkholderia
thailandensis E264]
Length = 153
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D +T+LDV +A + + + + DC + + L +A
Sbjct: 61 GGWELACELDAMTLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALNEAETLLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLARD 134
>gi|304322284|ref|YP_003855927.1| hypothetical protein PB2503_00070 [Parvularcula bermudensis
HTCC2503]
gi|303301186|gb|ADM10785.1| hypothetical protein PB2503_00070 [Parvularcula bermudensis
HTCC2503]
Length = 154
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ VL++ A D P ++A+A + + + +++ L G+V + +G GG L
Sbjct: 10 ALHVLLHLA-EADAPMTSERLAKAMATNPVVVRRVMAGLRDEGLVASEKGHGGGWTLTCN 68
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSI 127
+ T+ DV +A + C + + L L A D ++
Sbjct: 69 LSKTTLRDVYQALGHPPLFGMGHRNEASQCAVEQAVNAALGDALDAAEAVLLDRFGNVTL 128
Query: 128 ECLVRN 133
L R+
Sbjct: 129 ADLSRD 134
>gi|296111337|ref|YP_003621719.1| hypothetical protein LKI_06050 [Leuconostoc kimchii IMSNU 11154]
gi|295832869|gb|ADG40750.1| hypothetical protein LKI_06050 [Leuconostoc kimchii IMSNU 11154]
Length = 137
Score = 69.2 bits (168), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ + I +L Y I IA + + + ++ L A ++ T +G
Sbjct: 1 MGLSYKLSDAIHILAYIEILKKQDLSSKSIAASIGANASVVRNLMLDLRSANLLTTHQGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+L + D I+I DV A + +C + G L +A
Sbjct: 61 ATP-QLAKSPDDISIYDVYCAISMPHNLLNIDPKTNPNCLVGGHIQETLNHFYSDIESAA 119
Query: 119 FDVLTQYSIECLVRN 133
+D + S+ ++++
Sbjct: 120 YDQMKTISLAHVIQD 134
>gi|170017279|ref|YP_001728198.1| transcriptional regulator [Leuconostoc citreum KM20]
gi|169804136|gb|ACA82754.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
Length = 143
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 9/145 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I IA + + + +++ L AG++ T +G
Sbjct: 1 MRFSYKLSDAIHILTYIDIFQGNDLSSQAIAASIGSNASVVRNLMRDLRVAGLLVTKQGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+ L + + I++ DV A + +C + L + + A
Sbjct: 61 AAPI-LAKSPEDISLYDVYIAINMVHTLLHIDPKTNPNCLVGSRIQDTLNNFYTEVEVAA 119
Query: 119 FDVLTQYSIECLVRNRSSIKKIFNA 143
++ + S+ + ++ I NA
Sbjct: 120 YEKMRHISLADVTQH------ILNA 138
>gi|307721561|ref|YP_003892701.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
autotrophica DSM 16294]
gi|306979654|gb|ADN09689.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
autotrophica DSM 16294]
Length = 134
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 10/129 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ ++ YG+ + + +I +IA IS +L +IL L K G V +VRG
Sbjct: 4 VSTKSLYGVAAMHALYNSPRNKLMQIKEIAAVTQISHGYLEQILSTLKKHGFVISVRGAN 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L A +I +LDVV+A E F + S L S + V
Sbjct: 64 GGYKLASDASKIIVLDVVEALEGELFTV--------SQNVGASVVLDSFWKDIQEKVRAV 115
Query: 122 LTQYSIECL 130
+ L
Sbjct: 116 F-NIKLSEL 123
>gi|294782082|ref|ZP_06747408.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
gi|294480723|gb|EFG28498.1| transcriptional regulator superfamily [Fusobacterium sp. 1_1_41FAA]
Length = 141
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 62/141 (43%), Gaps = 9/141 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L +Y R+L Y ++ + D ++IAE I LF ++L+ + K G+++ +G
Sbjct: 1 MKLKNEIEYVFRILNYLSLQDKDRIVTSTEIAENENIPHLFSIRVLKKMEKKGLLKIFKG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG-SC-GLTSVLRKALNA 117
GG +L + IT+ D V+ EE C + SC + L + N
Sbjct: 61 ANGGYKLNKDPKDITLRDAVETIEEEII------IKDRSCVVGQTSCSVIFKALEEVENN 114
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
F + L + + + L +K
Sbjct: 115 FLNNLDKVNFKELTCPHVDLK 135
>gi|149177505|ref|ZP_01856108.1| hypothetical protein PM8797T_15496 [Planctomyces maris DSM 8797]
gi|148843655|gb|EDL58015.1| hypothetical protein PM8797T_15496 [Planctomyces maris DSM 8797]
Length = 136
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 42/119 (35%), Gaps = 3/119 (2%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A H P ++E + + + + + L K G V++ +G GG L +T+
Sbjct: 1 MAEHPG-PVTSKDLSEMMVTNPVVIRQTMAGLRKQGYVKSEKGHGGGWTLACDPSTVTLQ 59
Query: 77 DVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
D+ A +A + C + + L +A + ++ L+
Sbjct: 60 DIYAALGSPSLLAISNRTESPGCLVEQAVNSTLQQTFNEAEELLLSRFGEITLAMLIAE 118
>gi|300775786|ref|ZP_07085647.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
35910]
gi|300505813|gb|EFK36950.1| Rrf2 family transcriptional regulator [Chryseobacterium gleum ATCC
35910]
Length = 136
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 58/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ T+ + ++ A +A + ++ + + K + L +AG++ + +G+
Sbjct: 1 MNNTRFAT-AVHIMTLLAKSPQEWLTSDWMAGSINVNPVIVRKEISVLREAGLIISRQGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAF 118
GG +L + AD ITI ++ KA + + + + + C + + ++ + +
Sbjct: 60 EGGSQLAKNADMITISEIYKAVKNTEVLGKKNQNPNPACSVGKEINIHLNTLFEETDHLV 119
Query: 119 FDVLTQYSIECLVRN 133
+ L S++
Sbjct: 120 INFLGDKSLQEFTDQ 134
>gi|225848837|ref|YP_002729001.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1]
gi|225643212|gb|ACN98262.1| Rrf2 family protein [Sulfurihydrogenibium azorense Az-Fu1]
Length = 142
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 60/124 (48%), Gaps = 3/124 (2%)
Query: 11 IRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
IR L+Y A++ D + +I+EA + FL K +Q LVK GI+E+ RG +GG+ +P
Sbjct: 10 IRALIYLALNQDKEYISVKEISEALNLPFFFLAKNIQKLVKEGILESYRGPKGGISFKKP 69
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
++I I+D++ A + +C +C + C + + ++
Sbjct: 70 INEIKIIDIIVAIDGDNLFKKCVLGF-EECSDLNPCAIHHKWVPEREHLKGIFNA-TLYE 127
Query: 130 LVRN 133
+V +
Sbjct: 128 IVND 131
>gi|296448174|ref|ZP_06890072.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
gi|296254305|gb|EFH01434.1| transcriptional regulator, BadM/Rrf2 family [Methylosinus
trichosporium OB3b]
Length = 148
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 25/129 (19%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L + + + A+H+ P +A + L +LQ +V+AGI+++VRG
Sbjct: 4 LPRSARLALMAALDVALHSRARPVSSRALAARHELPPRHLESMLQAMVRAGILKSVRGPS 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L + ++ + ++V+ + ++ + P + S + V +A
Sbjct: 64 GGYELAKERRRLCVGEIVR-----VALRAEEEANGAESPRLLSSVIDPVFAEAERLALAR 118
Query: 122 LTQYSIECL 130
L + +++ L
Sbjct: 119 LDEITLDSL 127
>gi|300871768|ref|YP_003786641.1| Rrf2 family transcriptional regulator [Brachyspira pilosicoli
95/1000]
gi|300689469|gb|ADK32140.1| Rrf2 family transcriptional regulator [Brachyspira pilosicoli
95/1000]
Length = 146
Score = 68.8 bits (167), Expect = 2e-10, Method: Composition-based stats.
Identities = 30/148 (20%), Positives = 59/148 (39%), Gaps = 12/148 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + +++ A + + IA++ + + +IL L A IVET +
Sbjct: 1 MKINTKLSVATHIVLCIAFFENEGTTSNLIAKSVKTNPAIIRRILLKLQDAEIVETTKK- 59
Query: 61 RGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLRK----A 114
G +L + IT+L + KA E + + + CP+ C + VL +
Sbjct: 60 --GSKLIKDEKDITLLSIYKAVFTEEERGLFNFHHPNHV-CPVG--CAMFDVLGEEFNNV 114
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
F L++ +I+ + KK +
Sbjct: 115 REDFEKSLSKITIKKIADEVRKRKKHLD 142
>gi|86751060|ref|YP_487556.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris HaA2]
gi|86574088|gb|ABD08645.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris HaA2]
Length = 146
Score = 68.8 bits (167), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/125 (20%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A H D P Q+A C + + + + L +AG+V + RG GG +
Sbjct: 11 LHALLHMAEH-DAPMTSDQLAACMCTHPVVVRRTMGLLREAGLVASERGPSGGWLITADP 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ +A E A + +C + + L S A + + ++
Sbjct: 70 AAVTLRDLHQALGEPAIFAIGNRNETPECLVEQVVNAALDSAFVDAEALLLERFAEVTLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 KLSAD 134
>gi|325000811|ref|ZP_08121923.1| BadM/Rrf2 family transcriptional regulator [Pseudonocardia sp. P1]
Length = 158
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 5/135 (3%)
Query: 10 GIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
++ ++Y AI + +Q+AEA + + K+L PL G++ + +GR GG RL
Sbjct: 19 ALQAMLYLAIAAERDEPTTSSAQLAEALGTNPSLVRKLLVPLGAGGLIVSTKGRTGGTRL 78
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
RPA++IT+ ++ + + C + C G+ + + A + L
Sbjct: 79 SRPAERITLAEIYRCAVGEKPLWACRPESEHVCLDTGNAARYFAELTAETERAVLESLEH 138
Query: 125 YSIECLVRNRSSIKK 139
++ V + +
Sbjct: 139 RTLAGAVAEMRRLDR 153
>gi|300932585|ref|ZP_07147841.1| transcriptional regulator, BadM/Rrf2 family protein
[Corynebacterium resistens DSM 45100]
Length = 133
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
S IA + + K++ L + G+V + RGR GG+ L A + +++ E
Sbjct: 21 TSSSIAHNIGAPQTHVAKVVSKLAELGMVNSTRGRTGGIVLTPEARTKKLGTLMQELEGP 80
Query: 86 FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLV 131
CP C L VL+ A FFD L + +I +V
Sbjct: 81 RLSNYRVHD---PCPFDPECQLHGVLQLAAQQFFDHLDKTTINDIV 123
>gi|194014249|ref|ZP_03052866.1| Rrf2 family protein [Bacillus pumilus ATCC 7061]
gi|194013275|gb|EDW22840.1| Rrf2 family protein [Bacillus pumilus ATCC 7061]
Length = 137
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 8/140 (5%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + +L + A + IAE+ + + K++ L +AG++E RG
Sbjct: 1 MKQISNRYPIAVHILSFIAGVQKE-CTGNFIAESVNSNPAIVRKMMAMLKRAGLIEIRRG 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG L RPA++IT+LDV +A + E + F I CP+ + L S L++A
Sbjct: 60 V-GGAYLKRPAEEITLLDVYRAVDVSEDEELFN-FHQPVIACPIGQAMDTRLRSELKEAQ 117
Query: 116 NAFFDVLTQYSIECLVRNRS 135
+A + L Q +I+ L+
Sbjct: 118 SALENHLKQVTIQQLLTEAE 137
>gi|258509392|ref|YP_003172143.1| Rrf2 family transcriptional regulator [Lactobacillus rhamnosus GG]
gi|257149319|emb|CAR88292.1| Transcriptional regulator, Rrf2 family [Lactobacillus rhamnosus GG]
gi|259650674|dbj|BAI42836.1| putative transcriptional regulator [Lactobacillus rhamnosus GG]
Length = 146
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 1 MHLTKRTDYGIRVLMYC-----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
M + + + Y A H D I +I+E I + K L K+GI+
Sbjct: 1 MAFSVAFSQALEITAYVNAKSQAQHED-YLSIQKISEMLNIPVPSIKKNSSTLKKSGILT 59
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TS 109
+ G GG+RL + IT+ +++ A E + + + + G T+
Sbjct: 60 SKTGLNGGLRLAKTPQTITVYEILTAIEGTAPLFKLHQEIDPAAFVNGERVTSWLAASTN 119
Query: 110 VLRKALNAFFDVLTQYSIECLVRNRSS 136
VL +A +A VL Q SI L +
Sbjct: 120 VLNQAEDAMVQVLKQTSIADLAEAAEA 146
>gi|157692447|ref|YP_001486909.1| transcriptional regulator [Bacillus pumilus SAFR-032]
gi|157681205|gb|ABV62349.1| possible transcriptional regulator [Bacillus pumilus SAFR-032]
Length = 137
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + ++ + A IAE+ + + K++ L +A ++E RG
Sbjct: 1 MKQISSRYPIAVHIMSFIAGVPKE-CTGDFIAESVNSNPAIVRKMMAMLKRADLIEIRRG 59
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG L RPA++IT+LDV +A + E + F I CP+ + L S L++A
Sbjct: 60 V-GGAYLKRPAEEITLLDVYRAVDVSEDEELFN-FHQPVIACPIGQAMDTRLRSELKEAQ 117
Query: 116 NAFFDVLTQYSIECLVRNRS 135
A + L Q +I+ L+
Sbjct: 118 AALENHLKQVTIQQLLTEAE 137
>gi|262281617|ref|ZP_06059391.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
gi|262256943|gb|EEY75687.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
Length = 67
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 25/64 (39%), Positives = 40/64 (62%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K TDY +R+LMY A +D P I++IA+ +S+ L K++ + K + T+RG+
Sbjct: 4 MQLNKFTDYALRLLMYVARPSDAPYTIAEIAKDLHVSQNHLVKVVHFMGKQEWIITIRGK 63
Query: 61 RGGV 64
GG+
Sbjct: 64 GGGI 67
>gi|78776353|ref|YP_392668.1| BadM/Rrf2 family transcriptional regulator [Sulfurimonas
denitrificans DSM 1251]
gi|78496893|gb|ABB43433.1| transcriptional regulator, BadM/Rrf2 family [Sulfurimonas
denitrificans DSM 1251]
Length = 134
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 10/122 (8%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + YG+ + + + P +I +IA + + +L ++L L +AG+VE++RG +
Sbjct: 4 ISTKGSYGLAAICELSKRKENSPMQIKEIALNANVPQNYLEQLLGKLRRAGLVESIRGAK 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L RP I ILD++ A E+ + + H L A + +
Sbjct: 64 GGYILARPPQDIKILDILMALEDDLKIVDTLVEHP---------ILKLFFEDASESVKSI 114
Query: 122 LT 123
Sbjct: 115 FN 116
>gi|90422537|ref|YP_530907.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris BisB18]
gi|90104551|gb|ABD86588.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris BisB18]
Length = 154
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K T G+ ++ A H D IAE IS L K+L+ LV+A ++E+VRG
Sbjct: 1 MKLQKSTMCGLYAVLELAAHADQQISAGDIAEKYAISLNHLAKVLRALVRARLIESVRGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG R ++T+LD++ E++ E AS S L +LR
Sbjct: 61 GGGYRFSGNPKRVTLLDIITLFEDTAPDLEQAASDD----HEESRALHKMLRDIDGIAMT 116
Query: 121 VLTQYSIECLVR 132
L SI L++
Sbjct: 117 TLRSISITSLLK 128
>gi|291551332|emb|CBL27594.1| Predicted transcriptional regulator [Ruminococcus torques L2-14]
Length = 158
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT TDY IR++ Y A S++++ + ++ KI + L +AGI++ G
Sbjct: 1 MQLTSTTDYAIRIVCYLAAQR-QMISTSELSQELSVPSNYIPKITKKLKQAGIIKACEGT 59
Query: 61 RGGVRLCRPADQITILDVV 79
GG L + + I++++++
Sbjct: 60 NGGYMLAKQPENISLMEII 78
>gi|126641870|ref|YP_001084854.1| hypothetical protein A1S_1825 [Acinetobacter baumannii ATCC 17978]
gi|213157474|ref|YP_002319519.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
baumannii AB0057]
gi|215483319|ref|YP_002325530.1| Transcriptional regulator family protein [Acinetobacter baumannii
AB307-0294]
gi|239504201|ref|ZP_04663511.1| putative transcriptional regulator [Acinetobacter baumannii AB900]
gi|213056634|gb|ACJ41536.1| transcriptional regulator, BadM/Rrf2 family [Acinetobacter
baumannii AB0057]
gi|213986810|gb|ACJ57109.1| Transcriptional regulator family protein [Acinetobacter baumannii
AB307-0294]
Length = 141
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
+ KI L KAG+V G RGG L R A +I+ LD+V A E + EC
Sbjct: 1 MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60
Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
F + D G C + +V+ +A A D L +++ +
Sbjct: 61 FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102
>gi|326693155|ref|ZP_08230160.1| transcriptional regulator [Leuconostoc argentinum KCTC 3773]
Length = 165
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 16/149 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + VL+ + D+ P + +++ +SE +L K ++ LV AGIV+ +
Sbjct: 1 MKMSSAVEQSLVVLVMLELQKDHAPVKSYLLSDRLQVSESYLKKTMRKLVVAGIVDAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-------CFASHKIDCPLVGSCGLTSV-- 110
+ GG +L RP IT+LDV +A E F + K D P+ + +V
Sbjct: 61 KEGGFKLARPIANITLLDVYQAIEGDGSFIHSTQLADRIFLNQKSDKPVEDVQEVLNVTI 120
Query: 111 ------LRKALNAFFDVLTQYSIECLVRN 133
+A F L Y+I L+++
Sbjct: 121 TDVLTIFSEAEQDFKKRLKSYTIANLLQH 149
>gi|256839901|ref|ZP_05545410.1| predicted protein [Parabacteroides sp. D13]
gi|256738831|gb|EEU52156.1| predicted protein [Parabacteroides sp. D13]
Length = 152
Score = 68.4 bits (166), Expect = 3e-10, Method: Composition-based stats.
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 3 LTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-VRG 59
L+ T YG+ Y HN+ +IAE I+ L L+ LV AGI+ + G
Sbjct: 2 LSNPTRYGLIACRYLVWGWHNNVWLNAPEIAERYRINVRALSPALRRLVMAGILRSQCGG 61
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLV-GSCGLTSVLRKALNA 117
R G L R +++T+L+VV+A E +F + C + C SC + V R L+
Sbjct: 62 TRPGFMLSRAPEEVTMLEVVRALEGNFRMDCCRTVLPCVQCSCETDSCRVCGVFRDMLDE 121
Query: 118 FFDVLTQYSIEC 129
L+ S+E
Sbjct: 122 LRSRLSSVSLED 133
>gi|225569272|ref|ZP_03778297.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM
15053]
gi|225571816|ref|ZP_03780686.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM
15053]
gi|225159528|gb|EEG72147.1| hypothetical protein CLOHYLEM_07790 [Clostridium hylemonae DSM
15053]
gi|225162071|gb|EEG74690.1| hypothetical protein CLOHYLEM_05354 [Clostridium hylemonae DSM
15053]
Length = 143
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L+Y H D ++AE C + + K++ L K +V T G +G
Sbjct: 1 MTSEFAIAVHALVYL-RHKDTVVSSEELAENICTNPARVRKVMAKLKKKALVGTKEGIKG 59
Query: 63 GVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G + A +T+ V A EE + S +DC + + + +
Sbjct: 60 GYHMAADASAVTLRCVCDALEEEVIKASWKSGSIDMDCMIASGMAGMMDGIYSEMNAQCK 119
Query: 120 DVLTQYSIECL 130
D L +IE +
Sbjct: 120 DYLETVTIEDV 130
>gi|73663658|ref|YP_302439.1| hypothetical protein SSP2349 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72496173|dbj|BAE19494.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 144
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 19/136 (13%), Positives = 51/136 (37%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + +L + H D S++AE C++ + L ++ + L ++ RG+
Sbjct: 1 MNL--EFNIAVHLLTFLVKHPDERYSSSELAERICVNPVQLRRVTRKLNDQQYLDASRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
GG + ++ + ++ A E + + +++ ++
Sbjct: 59 YGGYQANDQTMKVNLAELFVAFSEERSDGRLFTGDEGSDCEISREIGHTMSNFHKREQAL 118
Query: 118 FFDVLTQYSIECLVRN 133
D +I ++
Sbjct: 119 LIDYYKSVTIHDVLNE 134
>gi|88856365|ref|ZP_01131024.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1]
gi|88814449|gb|EAR24312.1| hypothetical protein A20C1_00455 [marine actinobacterium PHSC20C1]
Length = 141
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 2/127 (1%)
Query: 11 IRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+R++M A+ + IA+ + K + L + G++E VRGR GGVR+
Sbjct: 3 LRIIMLLSAMPVFELEKTKVIAQKIDTPYNHVSKAIVRLRELGMIEAVRGRSGGVRISDA 62
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
Q T+ V++ + +A+C + CPL+ CGL LR A AF+ L I
Sbjct: 63 GRQATVGWVLRQLDTRTDLADCETPDGL-CPLIDGCGLRGALRLAREAFYAALDDVVISS 121
Query: 130 LVRNRSS 136
L + RS
Sbjct: 122 LRQPRSD 128
>gi|225019902|ref|ZP_03709094.1| hypothetical protein CLOSTMETH_03856 [Clostridium methylpentosum
DSM 5476]
gi|224947266|gb|EEG28475.1| hypothetical protein CLOSTMETH_03856 [Clostridium methylpentosum
DSM 5476]
Length = 167
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 25/144 (17%), Positives = 54/144 (37%), Gaps = 22/144 (15%)
Query: 3 LTKRTD--------YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+T + D + L++ H +A+ C + + K++ L K G+V
Sbjct: 21 ITVKGDELMTGEFAVAVHALVFL-NHKQKTVSSETLADNVCTNPARIRKVMAKLKKHGLV 79
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
+T G GG + ++T+ V +A +S L C ++S + +
Sbjct: 80 QTKEGADGGYQFVLNPREVTLAQVCEAVGNRL-----VSSSWRSGDLDKKCLISSGMGEI 134
Query: 115 LNAFFDVLTQY--------SIECL 130
+N ++ L +I+ +
Sbjct: 135 MNGIYEQLNDVCMQKLQTMTIQDI 158
>gi|227530014|ref|ZP_03960063.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540]
gi|227350046|gb|EEJ40337.1| transcriptional regulator [Lactobacillus vaginalis ATCC 49540]
Length = 111
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 2/109 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + + P IAE+ S + + +++ L AG+++TV G
Sbjct: 1 MRISTRFSDSIHILAFIETYKGKLPLSSEHIAESIETSPVVVRRLMGKLRSAGLIKTVHG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT 108
+L R I++ DV A E+ + DC + G+ T
Sbjct: 61 SADP-KLMREPKDISLYDVFLAVEDEQHLFAIDPKTNPDCIVGGNIQTT 108
>gi|167572719|ref|ZP_02365593.1| Transcriptional regulator family protein [Burkholderia oklahomensis
C6786]
Length = 153
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A + + + + DC + + L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALDEAETLLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLTRD 134
>gi|167565612|ref|ZP_02358528.1| Transcriptional regulator family protein [Burkholderia oklahomensis
EO147]
Length = 153
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 7/134 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA+ + + + +++ L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRHVER-ATSDAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L D IT+LDV +A + + + + DC + + L +A
Sbjct: 61 GGWELVCDLDAITLLDVYRAIGQPPLFSIGPHADQPDCLVEKAVDARMAEALDEAETLLL 120
Query: 120 DVLTQYSIECLVRN 133
++ L R+
Sbjct: 121 ARFGAITVGDLTRD 134
>gi|322376528|ref|ZP_08051021.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
M334]
gi|321282335|gb|EFX59342.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
M334]
Length = 158
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 6/148 (4%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ + ++E +S+ +L KI++ L G+V++VRG
Sbjct: 1 MRLSSGWEQSVYVLLMLNQLPEGKYINTISLSERLEVSDSYLKKIIKLLDNEGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
+ GGV L +P QIT DV A E + E + C +T+ L
Sbjct: 61 KNGGVALSKPLSQITFYDVFVAIEGKNRIFESQNLLKKFLGNKESKKAKRCVVTNSLDII 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
N LT ++ + + +
Sbjct: 121 ENTLVATLTSITLSQVAHQSEINYDLTD 148
>gi|222084619|ref|YP_002543148.1| hypothetical protein Arad_0566 [Agrobacterium radiobacter K84]
gi|221722067|gb|ACM25223.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
Length = 152
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/141 (17%), Positives = 51/141 (36%), Gaps = 7/141 (4%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ H + IA + + + + + L G V + +G
Sbjct: 6 RLSRM----LHVLIHMDRH-EGAATSETIAAMLGTNAVVVRRTMAGLRDQGYVRSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L +P +IT+LD+ A + A +C + + L + +
Sbjct: 61 GGWVLAQPLREITLLDIHNALGAPQLFSIGLAGDNPNCVIEQAVNASLAEAMSEGEAILL 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ ++ L S +
Sbjct: 121 AKFAKVTLAALAEQSSERWAL 141
>gi|289167875|ref|YP_003446144.1| transcriptional regulator [Streptococcus mitis B6]
gi|288907442|emb|CBJ22279.1| transcriptional regulator [Streptococcus mitis B6]
Length = 158
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 60/148 (40%), Gaps = 6/148 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + I VL+ + ++E +S+ +L KI++ L G+V++VRG
Sbjct: 1 MRLSSGWEQSIYVLLMLDQLAKGKYINTISLSERLEVSDSYLKKIIKLLDNEGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
+ GGV L +P QIT DV A E + E + C +T+ L
Sbjct: 61 KNGGVALSKPLSQITFYDVFVAIEGKNRIFESQNLLKKFLGNEESKKAKRCVVTNSLDII 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
N LT ++ + + +
Sbjct: 121 ENTLVATLTSITLSQVAHQSEINYDLTD 148
>gi|238026675|ref|YP_002910906.1| hypothetical protein bglu_1g10290 [Burkholderia glumae BGR1]
gi|237875869|gb|ACR28202.1| Hypothetical protein bglu_1g10290 [Burkholderia glumae BGR1]
Length = 145
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+ + R + + VL + P IA + + + ++L L AG+ + G
Sbjct: 1 MNTSSRFAFAVHVLALLSQQEGVPLSSEIIAGSVNTNPALIRRLLLRLAAAGLTRSQLGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG L R D IT+LDV +A +++ A + DC + L+ + A A
Sbjct: 61 GGGALLAREPDSITLLDVYRAVDDAQLFALHREAPNPDCLVGRHIQSVLSVYIDDARRAM 120
Query: 119 FDVLTQYSIECLVRN 133
L ++ + +
Sbjct: 121 EASLAARTLADVTAD 135
>gi|294784028|ref|ZP_06749350.1| Rrf2 family protein [Fusobacterium sp. 1_1_41FAA]
gi|294479840|gb|EFG27619.1| Rrf2 family protein [Fusobacterium sp. 1_1_41FAA]
Length = 146
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 7/140 (5%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + VL Y + +A++ + + KIL L A I+E+ +G++ G+
Sbjct: 3 TKFSIALHVLAYI-EETNNTVTSELLAKSVGTNASHIRKILALLKDADIIESQQGKK-GI 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
L A+++++ + + + DCP+ + L + ++ L
Sbjct: 61 VLKIKANELSLDKIYFGVYPEKELLHVHDTANPDCPVGATIKEALLPIFEESERQLILSL 120
Query: 123 TQYSIECLVRNRSSIKKIFN 142
+++ L+ + + KI+N
Sbjct: 121 KSKTLKSLIED---MYKIYN 137
>gi|254459171|ref|ZP_05072593.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
bacterium GD 1]
gi|207084064|gb|EDZ61354.1| transcriptional regulator, BadM/Rrf2 family [Campylobacterales
bacterium GD 1]
Length = 137
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + YG+ ++ A ++ +I IA I + +L +IL L K+G+VE+VRG
Sbjct: 4 ISTKGAYGLTAIIILAKEDNAKLLQIKDIAAKGDIPQNYLEQILVLLKKSGLVESVRGAN 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L R + I++ +V+ + E + ++ L + ++
Sbjct: 64 GGYKLSRDKNNISVYEVLNSLECCMAQTDNKSNDN---------MLQAFWEDTQEKVKEI 114
Query: 122 LTQYSIECL 130
Q SI+ L
Sbjct: 115 F-QLSIKEL 122
>gi|306820009|ref|ZP_07453659.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551957|gb|EFM39898.1| Rrf2 family transcriptional regulator [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 141
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 4/131 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L+Y D +A++ + + KI+ L A I+E+ +G++ G+
Sbjct: 3 TKFSIALHLLIYI-EETDKLVTSELLAQSVGTNASHIRKIIALLKDADIIESQQGKK-GM 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
L A ++T+ V A + + DCP+ + L + ++ L
Sbjct: 61 MLKIKASELTLDKVYFAIYPEKELLHIHDTANQDCPVGANIRQALLPIFEESERQLVLNL 120
Query: 123 TQYSIECLVRN 133
+++ L+ +
Sbjct: 121 KSKTLKSLIDD 131
>gi|16799534|ref|NP_469802.1| hypothetical protein lin0458 [Listeria innocua Clip11262]
gi|16412899|emb|CAC95690.1| lin0458 [Listeria innocua Clip11262]
Length = 155
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 28/141 (19%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 1 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 61 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 119
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ Q ++ +V + S ++
Sbjct: 120 IELEMDQIKLDSIVHDISVLE 140
>gi|325979000|ref|YP_004288716.1| BadM/Rrf2 family transcriptional regulator [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
gi|325178928|emb|CBZ48972.1| transcriptional regulator, BadM/Rrf2 family [Streptococcus
gallolyticus subsp. gallolyticus ATCC BAA-2069]
Length = 146
Score = 68.0 bits (165), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 57/140 (40%), Gaps = 5/140 (3%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R + +L+ N + +A + + + + +L L KA +V+ G
Sbjct: 1 MPYSARLATSVHILLAIYHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAELVKVEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVG--SCGLTSVLRKALN 116
GG L + ++T+ D+ +A E++ + + +CP+ + L + +
Sbjct: 61 V-GGAHLTKAPQELTLWDIFQAVEDTNKPIFKANDDTNPNCPVGRVVNSVLQPRIDEIQE 119
Query: 117 AFFDVLTQYSIECLVRNRSS 136
F L ++ L+ + +
Sbjct: 120 NFKASLENITLASLITDMDN 139
>gi|322417915|ref|YP_004197138.1| BadM/Rrf2 family transcriptional regulator [Geobacter sp. M18]
gi|320124302|gb|ADW11862.1| transcriptional regulator, BadM/Rrf2 family [Geobacter sp. M18]
Length = 149
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 1/128 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L K + + + ++ A IA+ IS L KI++ LV G+V+ VRG
Sbjct: 1 MKLNKASLFALIAVLELASDPKQQKSTLDIADKYGISTHHLAKIMRNLVHHGLVQAVRGV 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG A + T+LDVV E+ + I L ++ + N
Sbjct: 61 GGGYTFSGNAKRTTLLDVVM-MFETLESVLDIPNDCITEERPIVAELQAITNEIDNLTKV 119
Query: 121 VLTQYSIE 128
VL ++E
Sbjct: 120 VLETITLE 127
>gi|217978393|ref|YP_002362540.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
silvestris BL2]
gi|217503769|gb|ACK51178.1| transcriptional regulator, BadM/Rrf2 family [Methylocella
silvestris BL2]
Length = 148
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 6/130 (4%)
Query: 16 YCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
AIH+ P +A + L +LQ LV+A I++ +RG RGG L R +IT
Sbjct: 17 DIAIHSRPLPVAAKALAARLELPPRHLETLLQALVRANILKGLRGPRGGYELARERRKIT 76
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
V++A +++ + + + + ++ KA AF L +IE + R
Sbjct: 77 AGAVLRAV-----LSDAAGPGEPADSKLVAKVIAPMVEKAGAAFLAELDNITIEDICRRA 131
Query: 135 SSIKKIFNAG 144
+ +AG
Sbjct: 132 DELNLYRDAG 141
>gi|146317979|ref|YP_001197691.1| hypothetical protein SSU05_0323 [Streptococcus suis 05ZYH33]
gi|146320166|ref|YP_001199877.1| hypothetical protein SSU98_0319 [Streptococcus suis 98HAH33]
gi|253751201|ref|YP_003024342.1| transcription regulation protein [Streptococcus suis SC84]
gi|253753102|ref|YP_003026242.1| transcription regulation protein [Streptococcus suis P1/7]
gi|145688785|gb|ABP89291.1| hypothetical protein SSU05_0323 [Streptococcus suis 05ZYH33]
gi|145690972|gb|ABP91477.1| hypothetical protein SSU98_0319 [Streptococcus suis 98HAH33]
gi|251815490|emb|CAZ51068.1| putative transcription regulation protein [Streptococcus suis SC84]
gi|251819347|emb|CAR44720.1| putative transcription regulation protein [Streptococcus suis P1/7]
gi|292557762|gb|ADE30763.1| hypothetical protein SSGZ1_0298 [Streptococcus suis GZ1]
gi|319757471|gb|ADV69413.1| hypothetical protein SSUJS14_0308 [Streptococcus suis JS14]
Length = 149
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I L + + D +A + + + + +L L +AGIV+ +G
Sbjct: 1 MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRSVLSGLKEAGIVDAKQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG RL + D I++ D+ + + + + DC + G+ + L +
Sbjct: 61 -SGGFRLAKTLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCIVGGNIHAAVDDKLVQVQ 119
Query: 116 NAFFDVLTQYSIEC-LVRNRSSIKK 139
A L + LV +I++
Sbjct: 120 TAMEKELKTMYMSDVLVDLEKAIEE 144
>gi|325122781|gb|ADY82304.1| hypothetical protein BDGL_001718 [Acinetobacter calcoaceticus
PHEA-2]
Length = 138
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/127 (20%), Positives = 53/127 (41%), Gaps = 3/127 (2%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+L++ A + +IA+ + + + + + L +A V++ +G GG L ++
Sbjct: 1 MLLHMARQ-NRSFTSEEIAKMLSTNPVVIRRTMVGLKQANFVQSEKGPGGGWHLIGDIEK 59
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECL 130
IT+LD+ A E A +C + + L S ++ A L ++ L
Sbjct: 60 ITLLDIYNAVGEPTIFAMGNERKNPECAVEQVVNAALDSSIQAAQAILIQRLKDTTLADL 119
Query: 131 VRNRSSI 137
R+ I
Sbjct: 120 ARSFDQI 126
>gi|327470601|gb|EGF16057.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK330]
Length = 160
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 17/133 (12%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L + + +A + + ++ K++ L AG++ + +G+ G
Sbjct: 20 TKFSVALHILTMIS-ESRETLSSQNLATSVGTNSSYIRKVITLLKNAGLIISHQGK-SGY 77
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+L + ++++L++ AT+E + + + +C + + ++ + A
Sbjct: 78 QLGKTPKKMSLLEIYYATQEVKRISLFQMHQNANQECSVGQNIQEAVSPIFAIAEAQLEK 137
Query: 121 VLTQYSIECLVRN 133
L +++ ++ N
Sbjct: 138 ALRHQTLDDVINN 150
>gi|313620490|gb|EFR91857.1| transcription regulator [Listeria innocua FSL S4-378]
Length = 155
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 1 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 61 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 119
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ ++ + S ++
Sbjct: 120 IELEMDEIKLDSIIHDISVLE 140
>gi|167761548|ref|ZP_02433675.1| hypothetical protein CLOSCI_03959 [Clostridium scindens ATCC 35704]
gi|167661214|gb|EDS05344.1| hypothetical protein CLOSCI_03959 [Clostridium scindens ATCC 35704]
Length = 142
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 24/139 (17%), Positives = 55/139 (39%), Gaps = 15/139 (10%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + L+Y H + ++AE C + + K++ L K ++ T G
Sbjct: 1 MREMTSEFAIAVHALVYL-HHKNAVLSSEELAENICTNSARVRKVMAKLKKKELIGTKEG 59
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
+GG + A +IT+ D+ +A + + + + C + S + ++ +
Sbjct: 60 IKGGYHMSLDASEITLGDICEALQ-----VDIVKAAWRSGSMDMDCMIASGMAGVMDGIY 114
Query: 120 DVLTQ--------YSIECL 130
L + +I+ +
Sbjct: 115 AELDEICKKRLKGITIQDV 133
>gi|304408505|ref|ZP_07390143.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304342512|gb|EFM08368.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 142
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACC-ISELFLFKILQPLVKAGIVETVRGRR 61
+ + L+Y A + +A+ S + L K+G V T G
Sbjct: 1 MNSEFTIAVHSLVYLAYVPERMASSEALADNVGHASSSHSQSD-ERLRKSGYVATREGAG 59
Query: 62 GGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAF 118
GG RL +++++ D+ + + S + C ++DC + + + + A
Sbjct: 60 GGYRLTAEPNEVSLGDIYRVMAQGSLMPSWCSGDPEMDCVVGSNMKQVMFGIFCTAEKRL 119
Query: 119 FDVLTQYSIECLV 131
+I ++
Sbjct: 120 ETHFNAITIRDVL 132
>gi|259503283|ref|ZP_05746185.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
gi|259168738|gb|EEW53233.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
Length = 154
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 5/136 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R I +L + I H P IA + S + + +++ L K G++ETV G
Sbjct: 1 MRVSTRLSDSIHILAFLQIFHGKLPLTSENIAGSVRTSPVVIRRLMSALRKGGLIETVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
RL RPA +I++ D+ A E + +C + G+ L +A
Sbjct: 61 SADP-RLARPASEISLYDIYLAVEGSDRHLFTIDEKTAPECIVGGNIQATLAEYYHQAEV 119
Query: 117 AFFDVLTQYSIECLVR 132
A L +++ ++
Sbjct: 120 AAQAKLATVTLQDVLD 135
>gi|258611576|ref|ZP_05233618.2| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
gi|258601342|gb|EEW14667.1| conserved hypothetical protein [Listeria monocytogenes FSL N3-165]
Length = 182
Score = 67.6 bits (164), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 28 MKYSIQFSDAIHILTYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTG 87
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 88 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 146
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ ++ + S ++
Sbjct: 147 IELEMDEIKLDSIIHDISVLE 167
>gi|319790806|ref|YP_004152446.1| BadM/Rrf2 family transcriptional regulator [Variovorax paradoxus
EPS]
gi|315593269|gb|ADU34335.1| transcriptional regulator, BadM/Rrf2 family [Variovorax paradoxus
EPS]
Length = 153
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A D P +A A + + + +I+ L +AG V + +G GG L
Sbjct: 11 LHVLLHMA-EMDGPITSESLAAAMHTNPVVVRRIMAGLRQAGFVSSAKGHGGGWVLSCSL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
++T+ D+ A +A + C + + L A ++
Sbjct: 70 ARVTLGDIHNAVGAPALLAMGNRTESPGCIVEQAVNAALDDAFDAAEALLLKRFNSITLA 129
Query: 129 CLVRN 133
L ++
Sbjct: 130 DLSKD 134
>gi|81428601|ref|YP_395601.1| hypothetical protein LSA0990 [Lactobacillus sakei subsp. sakei 23K]
gi|78610243|emb|CAI55292.1| Hypothetical protein LCA_0990 [Lactobacillus sakei subsp. sakei
23K]
Length = 144
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +L Y I+ D IA + + + +++ LVKA ++E+ G
Sbjct: 1 MKYSHKLSDAIHILAYVEIYQDGDLSSQSIAGSIESNASLVRRLMSLLVKADLLESRPGT 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
+L RPA+QI++LDV +A + + C + + L + A
Sbjct: 61 IAP-KLARPAEQISVLDVYQALDTDQQLLHIDEKTNPQCLVGANIQSALNDAYDQVQKAA 119
Query: 119 FDVLTQYSIECLVRN 133
D + Q + ++ +
Sbjct: 120 EDQMAQIKLAGIIAD 134
>gi|299770003|ref|YP_003732029.1| putative transcriptional regulator [Acinetobacter sp. DR1]
gi|298700091|gb|ADI90656.1| putative transcriptional regulator [Acinetobacter sp. DR1]
Length = 141
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
+ KI L KAG+V G RGG L R A +I+ LD+V A E + EC
Sbjct: 1 MAKIFPKLEKAGLVIAQEGVRGGYLLARSAHEISFLDIVNAIEGEKPLFECQEVRGKCAV 60
Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
F D G C + +V+ +A A D L +++ +
Sbjct: 61 FNHAPPDWATGGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102
>gi|253754924|ref|YP_003028064.1| transcription regulation protein [Streptococcus suis BM407]
gi|251817388|emb|CAZ55124.1| putative transcription regulation protein [Streptococcus suis
BM407]
Length = 149
Score = 67.6 bits (164), Expect = 6e-10, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 7/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + I L + + D +A + + + + +L L +AGIV+ +G
Sbjct: 1 MQISNKFTIAIHALAFIHLFQDQQRVTSKVLANSIQANPVIIRSVLSGLKEAGIVDAKQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG RL + D I++ D+ + + + + DC + G+ + L +
Sbjct: 61 -SGGFRLAKTLDDISLYDIFVTVDNIDKKGLFNFHENPHPDCIVEGNIHAAVDDKLVQVQ 119
Query: 116 NAFFDVLTQYSIEC-LVRNRSSIKK 139
A L + LV +I++
Sbjct: 120 TAMEKELKTMYMSDVLVDLEKAIEE 144
>gi|192360374|ref|YP_001984189.1| transcriptional regulator family [Cellvibrio japonicus Ueda107]
gi|190686539|gb|ACE84217.1| Transcriptional regulator family [Cellvibrio japonicus Ueda107]
Length = 166
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ +L++ A + P +A+ + + + ++L L + G+V + +G GG L R
Sbjct: 11 LHILLHMA-EAELPMTSDALAKMMKTNPVVIRRMLAGLREQGLVCSEKGHGGGWTLGREL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
I++ D+ A +E +A + C + + L + +A + Q S+
Sbjct: 70 ASISLYDIYSALDEPTLLAMGNRTESPGCLVEQAVNSALNNTFGEAEALLLNCFRQVSLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 QLSAD 134
>gi|258612305|ref|ZP_05269685.2| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293596711|ref|ZP_05263693.2| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|258610600|gb|EEW23208.1| conserved hypothetical protein [Listeria monocytogenes F6900]
gi|293591694|gb|EFG00029.1| conserved hypothetical protein [Listeria monocytogenes J2818]
Length = 182
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 28 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTG 87
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 88 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 146
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ ++ + S ++
Sbjct: 147 IELEMDEIKLDSIIHDISVLE 167
>gi|47096459|ref|ZP_00234052.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
gi|47015180|gb|EAL06120.1| conserved hypothetical protein [Listeria monocytogenes str. 1/2a
F6854]
Length = 155
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 1 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 61 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 119
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ ++ + S ++
Sbjct: 120 IELEMDEIKLDSIIHDISVLE 140
>gi|307569980|emb|CAR83159.1| transcriptional regulator, putative [Listeria monocytogenes L99]
Length = 155
Score = 67.2 bits (163), Expect = 6e-10, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L K+ ++ T G
Sbjct: 1 MKYSIQFSDAIHILAYIEIFKNTKLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + LTS
Sbjct: 61 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQK 119
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 120 MELEMEKIKLDSIVRDISVLE 140
>gi|16802480|ref|NP_463965.1| hypothetical protein lmo0436 [Listeria monocytogenes EGD-e]
gi|224502271|ref|ZP_03670578.1| hypothetical protein LmonFR_07074 [Listeria monocytogenes FSL
R2-561]
gi|254900618|ref|ZP_05260542.1| hypothetical protein LmonJ_12419 [Listeria monocytogenes J0161]
gi|255016974|ref|ZP_05289100.1| hypothetical protein LmonF_02523 [Listeria monocytogenes FSL
F2-515]
gi|255029584|ref|ZP_05301535.1| hypothetical protein LmonL_11760 [Listeria monocytogenes LO28]
gi|16409813|emb|CAC98515.1| lmo0436 [Listeria monocytogenes EGD-e]
Length = 161
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 7 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKANLITTQTG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 67 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 125
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ ++ + S ++
Sbjct: 126 IELEMDEIKLDSIIHDISVLE 146
>gi|294345242|emb|CBL51475.1| putative nitric oxide reductase regulator [Thermus thermophilus]
Length = 141
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 1/117 (0%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
+ +IAE F+ K+LQ L KAG+VE+ GR+GGV P +I++L V++
Sbjct: 23 EEPGLSALEIAERLKAPPAFMAKVLQKLAKAGLVESRVGRKGGVWPKLPPGEISLLKVME 82
Query: 81 ATEESFFVAECFA-SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
A + C G C L L + L +++ L+
Sbjct: 83 ALSGPVVLDLCATLKRCPTEERRGFCYLKPGLARTGLEIRKALAGLTLKDLLPENPP 139
>gi|315641499|ref|ZP_07896571.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
15952]
gi|315482787|gb|EFU73311.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
15952]
Length = 157
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/142 (22%), Positives = 55/142 (38%), Gaps = 9/142 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LTK + G+ V+ P + I + S + KI++ LV +G+ +V G
Sbjct: 1 MQLTKAFEQGVCVMAMLTTQMPSIPVASATIHQRLGTSPTYTQKIVRKLVVSGLATSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--------SCGLTSVL 111
+ GG L R + I+ LDVV+A E + +
Sbjct: 61 QGGGFCLARASKDISCLDVVEAIEGKVVTFPDSQLLHHTFANSSRLVNLATANSIVYQAF 120
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
KA + + + L SI ++ +
Sbjct: 121 AKADDQWRNALANVSIADIIHD 142
>gi|152990511|ref|YP_001356233.1| transcriptional regulator [Nitratiruptor sp. SB155-2]
gi|151422372|dbj|BAF69876.1| transcriptional regulator [Nitratiruptor sp. SB155-2]
Length = 138
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 12/130 (9%)
Query: 3 LTKRTDYGIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++ + Y I + H + P + IA+ I + FL +IL L K+GIV+++RG
Sbjct: 4 VSAKGSYAIAAIFVLYEHYNENKPLKTELIAKLGSIPKNFLEQILLDLKKSGIVKSIRGA 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+GG L +P +I ++D++ + E C + L ++ +
Sbjct: 64 KGGYILAKPPKEILLIDIINSVEPECCTGICRTQNP---------VLEALWSDFNKTIQN 114
Query: 121 VLTQ-YSIEC 129
L++ +I
Sbjct: 115 FLSRPITIFD 124
>gi|313682502|ref|YP_004060240.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
DSM 16994]
gi|313155362|gb|ADR34040.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
DSM 16994]
Length = 141
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 2/132 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ IR ++ + RI +I+E+ + FL K LQ LV AGI+ ++RG
Sbjct: 2 LSSACQDTIRAAVWLSTKEIGKFYRIQEISESLELPYHFLSKSLQKLVHAGILVSLRGAS 61
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GGV L +PA +IT+L ++ A + S F C DC C L + ++
Sbjct: 62 GGVSLSKPASEITLLSIIDAVDGSVFFDTCVLGIG-DCEAEKPCALHAQWDVWRQEMLEM 120
Query: 122 LTQYSIECLVRN 133
+ + + +
Sbjct: 121 YSAMRLSEITDD 132
>gi|94313254|ref|YP_586463.1| BadM/Rrf2 family transcriptional regulator [Cupriavidus
metallidurans CH34]
gi|93357106|gb|ABF11194.1| transcriptional regulator, BadM/Rrf2 family [Cupriavidus
metallidurans CH34]
Length = 147
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 51/139 (36%), Gaps = 5/139 (3%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M T+ + VL++ + IA + + + + + L AG V++ G
Sbjct: 1 MRFDTRLARL-LHVLVHMHLRGGS-TTSENIALMLHTNPVVVRRTMAALRDAGYVQSTGG 58
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNA 117
R GG L R + T+ DV A + A A CP+ + + L A
Sbjct: 59 RGGGWDLARDLEDFTVKDVYVAIAHTALFALGPADDNPACPVEAAVNRHINEALSSAEMT 118
Query: 118 FFDVLTQYSIECLVRNRSS 136
+ + + R+ +S
Sbjct: 119 MLRFFGEKRLAEIARDATS 137
>gi|153811519|ref|ZP_01964187.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174]
gi|149832260|gb|EDM87345.1| hypothetical protein RUMOBE_01911 [Ruminococcus obeum ATCC 29174]
Length = 136
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 9/130 (6%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I + I +D +A + + + + KILQ L AG++E RG GGV + RP
Sbjct: 2 AIHMFACIDIFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG-TGGVTITRP 60
Query: 70 ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLT 123
+QIT LDV KA E + + CP+ + + VL + A + L+
Sbjct: 61 LEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEVQKAMEEKLS 118
Query: 124 QYSIECLVRN 133
+ ++ + ++
Sbjct: 119 EMTLADVKKD 128
>gi|83313117|ref|YP_423381.1| transcriptional regulator [Magnetospirillum magneticum AMB-1]
gi|82947958|dbj|BAE52822.1| Predicted transcriptional regulator [Magnetospirillum magneticum
AMB-1]
Length = 121
Score = 67.2 bits (163), Expect = 7e-10, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 2/113 (1%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
+ IA + + + + ++L L KAG+V + RG GG L RPAD+I++LD+ +
Sbjct: 2 DGQACTSEWIAGSVNTNPVVVRRLLSALAKAGLVSSTRGSAGGSVLARPADRISLLDIHR 61
Query: 81 ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
A +E A CP+ + L V+ +A A VL+ + +V
Sbjct: 62 AVDEEEEPALHNQPPNPACPVGRNIQSVLVRVMERADAARDAVLSTTKLSEVV 114
>gi|217965465|ref|YP_002351143.1| transcription regulator [Listeria monocytogenes HCC23]
gi|217334735|gb|ACK40529.1| transcription regulator [Listeria monocytogenes HCC23]
Length = 161
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L K+ ++ T G
Sbjct: 7 MKYSIQFSDAIHILAYIEIFKNTKLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQTG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + LTS
Sbjct: 67 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQK 125
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 126 MELEMEKIKLDSIVRDISVLE 146
>gi|167755758|ref|ZP_02427885.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402]
gi|237734725|ref|ZP_04565206.1| transcriptional regulator [Mollicutes bacterium D7]
gi|167704697|gb|EDS19276.1| hypothetical protein CLORAM_01273 [Clostridium ramosum DSM 1402]
gi|229382053|gb|EEO32144.1| transcriptional regulator [Coprobacillus sp. D7]
Length = 146
Score = 67.2 bits (163), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/145 (22%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L+ A +++ P + I+++ +S+ +L KI++ LV AG++ + G
Sbjct: 1 MKVKNSVEQAICLLIIIAHSNDEKPLKSYNISDSLGVSDSYLKKIIRQLVVAGLITSEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA-------ECFASHKIDCPLVGSCGLTSVLR 112
++GGV L R D+IT+LD+ +A E A F + + +
Sbjct: 61 KKGGVCLSRKPDKITLLDIFEAIEGKEPFAKATGLVERVFVNELKEIMDQKQAMILDAFN 120
Query: 113 KALNAFFDVLTQYSIEC-LVRNRSS 136
A ++ + L +++ +V +
Sbjct: 121 AAEASYKEKLKTITLKMAMVERKKD 145
>gi|322508566|gb|ADX04020.1| Putative uncharacterized protein [Acinetobacter baumannii 1656-2]
Length = 141
Score = 66.9 bits (162), Expect = 8e-10, Method: Composition-based stats.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 9/102 (8%)
Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAEC--------- 91
+ KI L KAG+V G RGG L R A +I+ LD+V A E + EC
Sbjct: 1 MAKIFPKLEKAGLVVAQEGVRGGYLLARSAHEISFLDIVNAIEAEKPLFECQEVRGKCAV 60
Query: 92 FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
F + D G C + +V+ +A A D L +++ +
Sbjct: 61 FNNAPPDWATSGVCAVHAVMLQAEKAMRDALGAHTLGDIADR 102
>gi|329926661|ref|ZP_08281072.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
gi|328939070|gb|EGG35435.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
Length = 160
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 56/137 (40%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH+ + + L+ + D I++ S + K+L+ LV A ++ +V G
Sbjct: 1 MHMKTGVEQSVYALVLLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALN 116
+GG RL + + I + DV A E + C L+ ++ +A +
Sbjct: 61 IKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESCCLLSDLMEEAES 120
Query: 117 AFFDVLTQYSIECLVRN 133
++ VL + +I L
Sbjct: 121 SWKAVLKRETIASLSEE 137
>gi|153814767|ref|ZP_01967435.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756]
gi|145847798|gb|EDK24716.1| hypothetical protein RUMTOR_00982 [Ruminococcus torques ATCC 27756]
Length = 136
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I + +D +A + + + + KILQ L AG++E RG GGV + RP
Sbjct: 2 AIHMFACIDTFSDQKMTSDFMAASIGTNPVIVRKILQQLKAAGLIEVARG-TGGVTITRP 60
Query: 70 ADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLTSVLR----KALNAFFDVLT 123
+QIT LDV KA E + + CP+ + + VL + A + L+
Sbjct: 61 LEQITFLDVYKAVECAPDEELFHFHENPNQKCPVGKN--IHHVLDKRLLEVQKAMEEKLS 118
Query: 124 QYSIECLVRN 133
+ ++ + ++
Sbjct: 119 EMTLADVKKD 128
>gi|257437595|ref|ZP_05613350.1| Rrf2 family protein [Faecalibacterium prausnitzii A2-165]
gi|257199902|gb|EEU98186.1| Rrf2 family protein [Faecalibacterium prausnitzii A2-165]
Length = 150
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 6/142 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH++ + + L++ + + + ++ + + + + IL L K G + TV+
Sbjct: 1 MHISNKCSIAVHCLVFLSEYGEREKVTSELLSCSTGCNPVTIRNILSALKK-GEIITVKP 59
Query: 60 RRGGVRLCRPADQITILDVVKATEES--FFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG L P ++I + + + + S CP+ + L
Sbjct: 60 GTGGAELALPPEKIDLYRICSVVDPEAIDKMIGIHHSPSPFCPVGRNIGNVLGKTYDTLK 119
Query: 116 NAFFDVLTQYSIECLVRNRSSI 137
N + ++E ++ + +
Sbjct: 120 NNLIASMKTITLEQILADYHEV 141
>gi|315659054|ref|ZP_07911921.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
gi|315496178|gb|EFU84506.1| conserved hypothetical protein [Staphylococcus lugdunensis M23590]
Length = 140
Score = 66.9 bits (162), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + A H D +++AE C++ + L +++ L + ++T+RG+
Sbjct: 1 MNL--EFNIAVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLT--SVLRKALN 116
GG + + IT+ ++ + S DC + T +
Sbjct: 59 HGGYQANQHTAAITLAELYSQFVLDKTHTQRLFTGSIDSDCIISNQIATTMSHYREQEQQ 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 119 LILNFYRDKTIDDVIED 135
>gi|271970217|ref|YP_003344413.1| transcriptional regulator [Streptosporangium roseum DSM 43021]
gi|270513392|gb|ACZ91670.1| putative transcriptional regulator [Streptosporangium roseum DSM
43021]
Length = 157
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 11/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L T++ + A + +Q+A+ + +L K L+ LV+AG++ G
Sbjct: 1 MKLPVSTEWVLHCATTLAQLDPGASASAAQLAQYYDLPAAYLTKQLKSLVRAGLLAATTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA--------SHKIDCPLVGSCGLTSVL 111
RGG RL RPA +IT+L +V+A + + EC +C +C L +
Sbjct: 61 PRGGFRLARPASEITLLQIVEAVDGTSPPYECREIRQQGRGALAPEECRR--TCILAEKM 118
Query: 112 RKALNAFFDVLTQYSIECLVR 132
A A+ L + ++ ++
Sbjct: 119 ADAHEAWRRTLAEVTLAGILA 139
>gi|229826970|ref|ZP_04453039.1| hypothetical protein GCWU000182_02354 [Abiotrophia defectiva ATCC
49176]
gi|229788588|gb|EEP24702.1| hypothetical protein GCWU000182_02354 [Abiotrophia defectiva ATCC
49176]
Length = 146
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/137 (20%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ I L+ + + P QIA + + ++ K+ L KA I+E RG G
Sbjct: 3 TKFSSAIHTLILIS-EAEVPMSSEQIAGSVGTNASYIRKLTTRLSKAEIIEGRRGV-SGF 60
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
L + +IT+LD+ KA E + + + C + + L+ + ++
Sbjct: 61 TLKKKPSEITLLDIYKAVMEVNEIHIFDIHQNSNDMCVVGQNIKPVLSGMFKEMEEQVEM 120
Query: 121 VLTQYSIE---CLVRNR 134
L ++E +++N
Sbjct: 121 QLKAMTLENCMDIMKNN 137
>gi|298291308|ref|YP_003693247.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Starkeya novella DSM 506]
gi|296927819|gb|ADH88628.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
506]
Length = 154
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A D P +A A + + + +++ L G V++ +G GG +
Sbjct: 11 LHVLLHMAER-DGPTTSDMLARAMDTNPVVIRRVMAGLRDRGYVQSEKGHGGGWTIACDL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
IT+ D+ +A +A + C + + L +A Q S+
Sbjct: 70 GAITLRDIYEALGRPELLAMGNRTDAPGCLIEQAVNAALGETFDEAEALLLSRFGQISLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|42526313|ref|NP_971411.1| hypothetical protein TDE0801 [Treponema denticola ATCC 35405]
gi|41816425|gb|AAS11292.1| conserved hypothetical protein [Treponema denticola ATCC 35405]
gi|325473257|gb|EGC76452.1| hypothetical protein HMPREF9353_02247 [Treponema denticola F0402]
Length = 144
Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L+ D +AE+ + + + K++ L AG++E +G
Sbjct: 1 MQIGTKFSVSIHILLCVEFFKDKCKVTSDFLAESVKTNPVVIRKLMSALKNAGLIEITQG 60
Query: 60 RRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG+ L + A QI+ LD+ A E + + + + +CP+ L A
Sbjct: 61 -TGGIALKKKAAQISFLDIFNAVESIKDGKLFKIHDTPPNECPVAQKINFLLDGYFLDAQ 119
Query: 116 NAFFDVLTQYSIECLVRNRSSIK 138
L ++++ ++ I+
Sbjct: 120 TTLEKKLNSFTLQSILNKIKDIQ 142
>gi|223985227|ref|ZP_03635311.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM
12042]
gi|223962805|gb|EEF67233.1| hypothetical protein HOLDEFILI_02617 [Holdemania filiformis DSM
12042]
Length = 156
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T I +Y A H + P ++A C + + KI+ L +AGI + G G
Sbjct: 1 MTSELTVAIHAAVYLA-HKNAPQSSDELAVNICTHPVRVRKIMAALCRAGIAVSQEGSEG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC---FASHKIDCPLVGSCG--LTSVLRKALNA 117
G RLCR IT+ + +A + + E ++ C + + + R
Sbjct: 60 GYRLCRSPQAITLRQIAEAL--NVALVESKWQSGDPEMSCLVASGMAREMDKIYRSLNEQ 117
Query: 118 FFDVLTQYSIECLVRN 133
+ L + ++ L+++
Sbjct: 118 CLESLDRLTLWDLLQD 133
>gi|290892404|ref|ZP_06555398.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
gi|290557970|gb|EFD91490.1| conserved hypothetical protein [Listeria monocytogenes FSL J2-071]
Length = 182
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L K+ ++ T G
Sbjct: 28 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKSDLITTQTG 87
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + LTS
Sbjct: 88 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQK 146
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 147 MELEMEKIKLDSIVRDISVLE 167
>gi|120435758|ref|YP_861444.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
KT0803]
gi|117577908|emb|CAL66377.1| Rrf2-like transcriptional regulator protein [Gramella forsetii
KT0803]
Length = 142
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 4/141 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+K +YGIR +Y A + + + +IA A E F KI+Q L K IV + +G
Sbjct: 2 FSKACEYGIRATLYIAHQSQNGMRSNLGEIARAVNSPEAFTAKIMQKLSKNEIVASRKGP 61
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GG + + I +V+A + C +C C L
Sbjct: 62 SGGFFIDPSSKTKLIA-IVQAIDGDLIYNGC-GLGLQECSESLPCPLHDQFIAIRGDLKK 119
Query: 121 VLTQYSIECLVRNRSSIKKIF 141
+L I L S K
Sbjct: 120 MLEHTEIMSLAGKLESNKTFL 140
>gi|324998176|ref|ZP_08119288.1| transcriptional regulator [Pseudonocardia sp. P1]
Length = 258
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++ R D+ + L + ++ A + L ++ L +AG+V + RG G
Sbjct: 138 VSARLDHALAALAELVDADGDTVTCDAMSRARGVPLNSLVNVMLQLRRAGLVTSRRGCEG 197
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL R AD+IT+ DVV+ATE + V + + + L
Sbjct: 198 GYRLARRADEITVADVVRATEGAVAVLRGTGPASV------------LWADLERTVAEFL 245
Query: 123 TQYSIECL 130
T ++ L
Sbjct: 246 TSRTLTDL 253
>gi|224499981|ref|ZP_03668330.1| transcription regulator [Listeria monocytogenes Finland 1988]
gi|254830570|ref|ZP_05235225.1| hypothetical protein Lmon1_04387 [Listeria monocytogenes 10403S]
gi|255026916|ref|ZP_05298902.1| hypothetical protein LmonocytFSL_12321 [Listeria monocytogenes FSL
J2-003]
gi|284800722|ref|YP_003412587.1| hypothetical protein LM5578_0469 [Listeria monocytogenes 08-5578]
gi|284993908|ref|YP_003415676.1| hypothetical protein LM5923_0468 [Listeria monocytogenes 08-5923]
gi|284056284|gb|ADB67225.1| hypothetical protein LM5578_0469 [Listeria monocytogenes 08-5578]
gi|284059375|gb|ADB70314.1| hypothetical protein LM5923_0468 [Listeria monocytogenes 08-5923]
Length = 161
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + KI+ L KA ++ T G
Sbjct: 7 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKADLITTQTG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + LTS
Sbjct: 67 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQQK 125
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 126 IEFEMEKIKLDSIVRDISVLE 146
>gi|288906031|ref|YP_003431253.1| hypothetical protein GALLO_1840 [Streptococcus gallolyticus UCN34]
gi|306834188|ref|ZP_07467308.1| Rrf2 family transcriptional regulator [Streptococcus bovis ATCC
700338]
gi|288732757|emb|CBI14331.1| conserved hypothetical protein [Streptococcus gallolyticus UCN34]
gi|304423761|gb|EFM26907.1| Rrf2 family transcriptional regulator [Streptococcus bovis ATCC
700338]
Length = 146
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/140 (17%), Positives = 56/140 (40%), Gaps = 5/140 (3%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + R + +L+ N + +A + + + + +L L KA +V+ G
Sbjct: 1 MPYSARLATSVHILLAIYHFENKEKVTSTFLANSIQTNPVIVRNLLGKLQKAELVKVEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVG--SCGLTSVLRKALN 116
GG L + ++T D+ +A E+ + + + +CP+ + L + +
Sbjct: 61 V-GGAHLTKAPQELTFWDIFQAVEDKNKPIFKANDDTNPNCPVGRVVNSVLQPRIDEVQE 119
Query: 117 AFFDVLTQYSIECLVRNRSS 136
F L ++ L+ + +
Sbjct: 120 NFKASLENITLASLITDMDN 139
>gi|322392211|ref|ZP_08065672.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC
700780]
gi|321144746|gb|EFX40146.1| hypothetical protein HMPREF9180_1062 [Streptococcus peroris ATCC
700780]
Length = 158
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 6/148 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MHL+ + I VL+ + ++E +S+ +L KI++ L G+V++VRG
Sbjct: 1 MHLSSGWEQSIYVLLMLDQLPEGEYINSIFLSERLGVSDSYLKKIIKLLDNEGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
+ GG+ L RP QI+ DV A E + E + + C +T+ L
Sbjct: 61 KNGGIALSRPLSQISFYDVFVAIEGKNRIFESQNLLKRFLGEEEGKKAKRCVVTNSLDMI 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
N LT ++ + + +
Sbjct: 121 ENTLVSTLTSITLSQVAFQAEMNYDLTD 148
>gi|300174153|ref|YP_003773319.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
gi|299888532|emb|CBL92500.1| Transcription regulator [Leuconostoc gasicomitatum LMG 18811]
Length = 137
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 3/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ + I +L Y I + IA + + + ++ L A ++ T +G
Sbjct: 1 MRVSYKLSDAIHILAYIEIFKQHDLSSKAIAASIGSNASVVRNLMLDLRAANLLTTHQGI 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
L + + I+I V A + + +C + G L A
Sbjct: 61 AAP-ELAKSPNDISIYAVYCAINMTHKLLHIDPKTNPNCLVGGHIQDTLNQFYDGIETAA 119
Query: 119 FDVLTQYSIECLVRN 133
+D + S+ ++++
Sbjct: 120 YDHMKTISLAHVIQD 134
>gi|332187195|ref|ZP_08388935.1| transcriptional regulator family protein [Sphingomonas sp. S17]
gi|332012895|gb|EGI54960.1| transcriptional regulator family protein [Sphingomonas sp. S17]
Length = 150
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ +L++ + P A + + + + + L AG V +++G GG L
Sbjct: 2 LHLLIHMGRM-EGPLTSDDAAMMLGTNPVVVRRTMAGLRDAGYVRSMKGHGGGWSLTCGL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIE 128
D IT+LDV +A E+ A A C + + L LR+A L + ++
Sbjct: 61 DGITMLDVHRALGENRIFALGPADPAATCLVEQAVNGSLEEALREAEALLLRRLGEVTLA 120
Query: 129 CLVRN 133
+ +
Sbjct: 121 DIAAD 125
>gi|290579608|ref|YP_003484000.1| hypothetical protein SmuNN2025_0082 [Streptococcus mutans NN2025]
gi|254996507|dbj|BAH87108.1| hypothetical protein [Streptococcus mutans NN2025]
Length = 157
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 58/149 (38%), Gaps = 9/149 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + + VL+ + D ++ S +L KI++ LV G++ ++ G
Sbjct: 1 MKLSSGWEQSVYVLLILSQLPDSKTINSQSLSLRLGTSHSYLKKIIKLLVNEGLITSIPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKA 114
+ GG L + + IT DV A E + + + C +T L
Sbjct: 61 KYGGFSLAKSLEDITFYDVFIAVEGRGKIFASQQLLKKFLGENEGKKAQKCAVTDSLDII 120
Query: 115 LNAFFDVLTQYSIECL---VRNRSSIKKI 140
N L+ S+ + + + ++ ++
Sbjct: 121 ENTLVTTLSSISLAQVFNQISSNYNLDEL 149
>gi|330994153|ref|ZP_08318081.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter
sp. SXCC-1]
gi|329758620|gb|EGG75136.1| Putative HTH-type transcriptional regulator ORF2 [Gluconacetobacter
sp. SXCC-1]
Length = 148
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/138 (23%), Positives = 57/138 (41%), Gaps = 9/138 (6%)
Query: 1 MHLTK-RTDYGIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M L + RT I +++ A H + IAE ++ + +LQ L ++G++E+V
Sbjct: 1 MLLRRDRTMIAILIMLDVAFHAGRNGTISAADIAERAGLARRGIEPLLQTLSRSGLLESV 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
RG RGG RL RP I + D++ + S + ++ +
Sbjct: 61 RGPRGGYRLGRPRRDILLADILSVITAE------DNRDDGPVGDLFSKVVEPCWQQFDSM 114
Query: 118 FFDVLTQYSIECLVRNRS 135
+ S++ LVR
Sbjct: 115 IDAECHKISLDDLVRRAE 132
>gi|289551542|ref|YP_003472446.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis
HKU09-01]
gi|289181073|gb|ADC88318.1| hypothetical protein SLGD_02231 [Staphylococcus lugdunensis
HKU09-01]
Length = 141
Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + A H D +++AE C++ + L +++ L + ++T+RG+
Sbjct: 2 MNL--EFNIAVHVLCFLAKHKDKHYSSTELAELTCLNPVQLRRVMSQLNNSNYIQTIRGK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLT--SVLRKALN 116
GG + + IT+ ++ + S DC + T +
Sbjct: 60 HGGYQANQHTAAITLAELYSQFVLDKTHTQRLFTGSIDSDCIISNQIATTMSHYREQEQQ 119
Query: 117 AFFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 120 LILNFYRDKTIDDVIED 136
>gi|317406169|gb|EFV86423.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter
xylosoxidans C54]
Length = 148
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 60/141 (42%), Gaps = 7/141 (4%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A D P I + + + + +++ L + G V++ +G
Sbjct: 6 RLSRM----LHVLLHMAEQ-DAPLTSETIGKMLNTNPVVVRRMMSGLRERGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG L RP ++T+LDV +A E A + C + + GL + ++
Sbjct: 61 GGWVLTRPLAELTLLDVYQALGEPPIFALGLDQSEPKCLVEQAVNAGLEGAMAESRRLLL 120
Query: 120 DVLTQYSIECLVRNRSSIKKI 140
+ ++ L R+ K+
Sbjct: 121 ERFATIRMDQLARDFQERLKL 141
>gi|124384456|ref|YP_001026690.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
gi|167845078|ref|ZP_02470586.1| putative transcriptional regulator [Burkholderia pseudomallei
B7210]
gi|254298135|ref|ZP_04965588.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
gi|124292476|gb|ABN01745.1| Rrf2 family protein [Burkholderia mallei NCTC 10229]
gi|157807552|gb|EDO84722.1| putative transcriptional regulator [Burkholderia pseudomallei 406e]
Length = 141
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 2/123 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+L ++ P IA + + + ++L L AG+ + G GG L R +
Sbjct: 1 MLALLSLQEGVPLSSEVIAGSVNTNPALIRRLLSMLAAAGLTASQLGAGGGALLAREPSR 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
IT+LDV +A +++ A + C + LT + A A L ++ +
Sbjct: 61 ITLLDVYRAVDDAQLFALHREAPNPACLVGRHIQGVLTDYIGDAQRAMEASLATRTLADV 120
Query: 131 VRN 133
+
Sbjct: 121 TAD 123
>gi|37520366|ref|NP_923743.1| hypothetical protein glr0797 [Gloeobacter violaceus PCC 7421]
gi|35211359|dbj|BAC88738.1| glr0797 [Gloeobacter violaceus PCC 7421]
Length = 140
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 28/134 (20%), Positives = 60/134 (44%), Gaps = 9/134 (6%)
Query: 1 MHLTKRTDYGIRVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M L+ +++Y + ++ P +I +IA+ I + +L ++L L + G+V++ R
Sbjct: 1 MELSAKSEYALLAMLQLALGHGKGEPMQIKEIAQCQSIPDRYLEQLLADLRRHGLVKSQR 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
G RGG L R I +L++V+ E + + + + ++ A
Sbjct: 61 GARGGYLLAREPFAIHLLEIVQCI-------EGQDETETPPNTLEASIVREAWDESRRAA 113
Query: 119 FDVLTQYSIECLVR 132
VL ++++ L
Sbjct: 114 EQVLKGHTLQKLCE 127
>gi|114798072|ref|YP_758963.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444]
gi|114738246|gb|ABI76371.1| rrf2 family protein [Hyphomonas neptunium ATCC 15444]
Length = 163
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 11/147 (7%)
Query: 1 MHLTKRTDYGIRVLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + ++ + A+ + + IA + +L K +Q L +AGIV + RG
Sbjct: 1 MRMGEGVEWAAHACLLLSALPDGAGLPAAAIAAFHDVPPAYLAKHMQALARAGIVTSARG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDC-----PLVGSCGLTSVLRK 113
GG RL R ++I +L + A + C + C + +CG+ +
Sbjct: 61 ASGGYRLARAPEEINLLQIADAVDGGEPAFRCTEIRQRGPCAAKAEECMKACGIAAAFWA 120
Query: 114 ALNAFFDVLTQYSIEC----LVRNRSS 136
A + L + LVR + S
Sbjct: 121 AERIYRQHLEGVRLADIRSALVRKQDS 147
>gi|255521304|ref|ZP_05388541.1| hypothetical protein LmonocFSL_08780 [Listeria monocytogenes FSL
J1-175]
Length = 167
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + KI+ L K+ ++ T G
Sbjct: 13 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQTG 72
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + L S
Sbjct: 73 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLASKYDLLQQK 131
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 132 IEFEMEKIKLDSIVRDISVLE 152
>gi|261406785|ref|YP_003243026.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
Y412MC10]
gi|261283248|gb|ACX65219.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
Y412MC10]
Length = 160
Score = 66.1 bits (160), Expect = 1e-09, Method: Composition-based stats.
Identities = 29/137 (21%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH+ + + L+ + D I++ S + K+L+ LV A ++ +V G
Sbjct: 1 MHMKTGVEQSVYALVLLNMLPDRAVLPGEAISQQLGTSVTYFQKLLRKLVTADLITSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALN 116
+GG RL + + I + DV A E + C L+ ++ +A
Sbjct: 61 IKGGFRLRKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLQKEESCCLLSDLMEEAET 120
Query: 117 AFFDVLTQYSIECLVRN 133
++ VL + +I L
Sbjct: 121 SWKAVLKRETIASLSEE 137
>gi|331001950|ref|ZP_08325470.1| hypothetical protein HMPREF0491_00332 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330411746|gb|EGG91151.1| hypothetical protein HMPREF0491_00332 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 142
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + D ++ + + + + IL L KAG++ TV
Sbjct: 1 MQISSRFTIALHIFTCVEYFKDREKITSDFLSGSISSNPVIIRNILSQLRKAGLI-TVAR 59
Query: 60 RRGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG+ + R +I+ D+ A E + S CP+ + L L K
Sbjct: 60 GTGGIEITRDLSEISFYDIYMAVEAVKEEGLFHFHESPNPMCPVGKNIHRLLDDKLVKIQ 119
Query: 116 NAFFDVLTQYSIECL 130
A + + +Y++ +
Sbjct: 120 EAMENKMKEYTLLDI 134
>gi|322374098|ref|ZP_08048632.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
C150]
gi|321277064|gb|EFX54135.1| putative HTH-type transcriptional regulator YffB [Streptococcus sp.
C150]
Length = 159
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + I VL+ + ++E +S+ +L KI++ L G+V++VRG
Sbjct: 1 MRLSSGWEQSIYVLLMLDQLPEGKYINSVFLSERLGVSDSYLKKIIKLLDNEGLVKSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-----SHKIDCPLVGSCGLTSVLRKA 114
+ GG+ L +P +I+ DV A E + E + C +T+ L
Sbjct: 61 KNGGIALSKPLSKISFYDVFVAIEGKNRIFESQNLLKKFLGDEEGSRAKKCVVTNSLDVI 120
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKKIFN 142
N L ++ + + +
Sbjct: 121 ENTLVSTLISITLSQVAFQAEMNYDLTD 148
>gi|85709197|ref|ZP_01040263.1| Rrf2 family protein [Erythrobacter sp. NAP1]
gi|85690731|gb|EAQ30734.1| Rrf2 family protein [Erythrobacter sp. NAP1]
Length = 162
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L K ++ V A+ + +AE + +L K +Q L +AGI ++VRG
Sbjct: 1 MQLAKGIEWTTHVCTIIALLPEGKGLSVDALAEFFELPAAYLSKQMQALRRAGIAQSVRG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCPLVGS-----CGLTSVLRK 113
+ GG RL + D IT+LD+V A E C C L S C + +
Sbjct: 61 KGGGYRLAQSPDAITLLDIVIAIEGPSPAFRCTEIRQNGPCGLERSECKRPCEIAAAFAA 120
Query: 114 ALNAFFDVLTQYSIECLVRN 133
A A+ L ++ +++
Sbjct: 121 AEQAYRSALESKTLASIMQE 140
>gi|313625047|gb|EFR94927.1| BadM/Rrf2 family transcriptional regulator [Listeria innocua FSL
J1-023]
Length = 155
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 1 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIASSVKTNPANIRRIMSNLKKANLITTQTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L +P ++I++LDV K+ E + + DC + + L+S
Sbjct: 61 KANPI-LTKPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLSSKYELLQQK 119
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ ++ + S ++
Sbjct: 120 LELEMDEIKLDSIIHDISVLE 140
>gi|259046428|ref|ZP_05736829.1| Rrf2 family protein [Granulicatella adiacens ATCC 49175]
gi|259036973|gb|EEW38228.1| Rrf2 family protein [Granulicatella adiacens ATCC 49175]
Length = 138
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 48/132 (36%), Gaps = 15/132 (11%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L Y AIH+D ++A C + + K++ VK G V T G++GG +
Sbjct: 9 IHCLTYLAIHHDNRYSSKELAFNACSNPAIVRKLMSLAVKKGWVSTAAGKQGGYQWISDP 68
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL---------RKALNAFFDV 121
+I + D+ E + SC ++S + +
Sbjct: 69 SKIKLGDIFILVSEDARL-----EKTFKEASDPSCLVSSRMGKIMGKLQEEQIQEQIR-F 122
Query: 122 LTQYSIECLVRN 133
Q +I+ ++
Sbjct: 123 YNQKTIQDMIDK 134
>gi|170016479|ref|YP_001727398.1| transcriptional regulator [Leuconostoc citreum KM20]
gi|169803336|gb|ACA81954.1| Predicted transcriptional regulator [Leuconostoc citreum KM20]
Length = 166
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/149 (24%), Positives = 64/149 (42%), Gaps = 16/149 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + VL+ A+ D P + ++ +SE +L K ++ LV AGIV+ +
Sbjct: 1 MKMSNAVEQSLVVLVMLALQKDELPIKSYLLSNRLEVSESYLKKTMRKLVVAGIVQAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-------CFASHKIDCPLVGSCG------ 106
+ GG +L R IT+LDV +A E F + + P+
Sbjct: 61 KEGGFKLARSIADITLLDVYEAIEGDGSFIHSTQLADRIFLNQASNKPVEDVQQALEVAV 120
Query: 107 --LTSVLRKALNAFFDVLTQYSIECLVRN 133
+ +V A F L Y+I L+++
Sbjct: 121 DDVLTVFNDAEADFKKRLQNYTIAKLLQH 149
>gi|46906690|ref|YP_013079.1| hypothetical protein LMOf2365_0473 [Listeria monocytogenes serotype
4b str. F2365]
gi|46879955|gb|AAT03256.1| conserved hypothetical protein [Listeria monocytogenes serotype 4b
str. F2365]
Length = 155
Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + KI+ L K+ ++ T G
Sbjct: 1 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQTG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + L S
Sbjct: 61 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLASKYDLLQQK 119
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 120 IEFEMEKIKLDSIVRDISVLE 140
>gi|284048823|ref|YP_003399162.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
fermentans DSM 20731]
gi|283953044|gb|ADB47847.1| transcriptional regulator, BadM/Rrf2 family [Acidaminococcus
fermentans DSM 20731]
Length = 169
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 14/145 (9%)
Query: 6 RTDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
++D+ + L+Y + H ++AE C + + KI+ L K GI+ T G GG
Sbjct: 2 KSDFIVAVHALVYLS-HRGCLASSEELAENICTNPARVRKIMGKLKKMGIITTREGHVGG 60
Query: 64 VRLCRPADQITILDVVKATEESFFVAE---CFASHKIDC--PLVGSCGLTSVLRKALNAF 118
C +++++ ++ A + + + +C S S+ R+
Sbjct: 61 YCPCEGLEKVSLYEI--AQGMDTVFVDTKWRSGNEENNCFISSGMSSVFDSLYRELDRLC 118
Query: 119 FDVLTQYSIEC----LVRNRSSIKK 139
D L ++ +V + S +K
Sbjct: 119 MDHLKGITLGDVTAQIVETQRSSRK 143
>gi|253574515|ref|ZP_04851856.1| LOW QUALITY PROTEIN: transcriptional regulator [Paenibacillus sp.
oral taxon 786 str. D14]
gi|251846220|gb|EES74227.1| LOW QUALITY PROTEIN: transcriptional regulator [Paenibacillus sp.
oral taxon 786 str. D14]
Length = 135
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/124 (19%), Positives = 43/124 (34%), Gaps = 3/124 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+Y D QIA + + K+L L + +V T G RGG L
Sbjct: 8 AVHCLLYLDSKEDRMANSEQIACSVATHPARVRKVLSLLRRHDLVTTKEGARGGYLLKCE 67
Query: 70 ADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
Q+T+ D+ + + S C S C + + + + A +
Sbjct: 68 LSQVTLGDLYRIFAQGSLHPNWCSGSEHSSCNISSNIPAVMNQIYSGAEKQVEMFFDRLP 127
Query: 127 IECL 130
+ +
Sbjct: 128 LSEV 131
>gi|47097212|ref|ZP_00234776.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854]
gi|47014426|gb|EAL05395.1| rrf2 protein [Listeria monocytogenes str. 1/2a F6854]
Length = 67
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +T + YG+ + + A D P + IA+ +SE +L +++ PL AGIV+++RG
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRG 60
Query: 60 RRGGVRL 66
GG L
Sbjct: 61 AHGGYVL 67
>gi|296117178|ref|ZP_06835771.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
gi|295976273|gb|EFG83058.1| transcriptional regulator, BadM/Rrf2 family protein
[Gluconacetobacter hansenii ATCC 23769]
Length = 151
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 10 GIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
I +++ A H ++IA+ ++ + +LQ L ++G++ VRG GG RL
Sbjct: 11 AIFIMLDIAFHGMHGNTVSATEIAQRSGMARRGIEPLLQVLSRSGLLSGVRGPHGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
PA +I + D+ +A E + + L + + ++
Sbjct: 71 HPAREILLSDIHQAIMARHDRMERRNGPLFNT------VIRPFLNQMEGMLEREYRKVTL 124
Query: 128 ECLVRNRSS 136
+ LVR +
Sbjct: 125 DELVRQAEN 133
>gi|162147274|ref|YP_001601735.1| transcriptional regulator [Gluconacetobacter diazotrophicus PAl 5]
gi|209544320|ref|YP_002276549.1| BadM/Rrf2 family transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|161785851|emb|CAP55422.1| putative transcriptional regulator [Gluconacetobacter
diazotrophicus PAl 5]
gi|209531997|gb|ACI51934.1| transcriptional regulator, BadM/Rrf2 family [Gluconacetobacter
diazotrophicus PAl 5]
Length = 149
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 7/129 (5%)
Query: 10 GIRVLMYCAIHNDY--PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ +++ A H + IAE ++ + +LQ L ++ ++E+VRG RGG RL
Sbjct: 11 AVLIMLDVAFHAGRSGTVSAADIAERAGLARRGIEPLLQTLSRSSLLESVRGPRGGYRLG 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
RP IT+ D+V+ A+ +S + + + +K + + ++
Sbjct: 71 RPRRDITLADIVE-----IATADDSSSDDGPVGALFTKVIEPCWQKLDDTLSTQCRKLTL 125
Query: 128 ECLVRNRSS 136
+ LVR S
Sbjct: 126 DDLVRRAES 134
>gi|315651558|ref|ZP_07904578.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
3986]
gi|315486213|gb|EFU76575.1| Rrf2 family transcriptional regulator [Eubacterium saburreum DSM
3986]
Length = 170
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 52/135 (38%), Gaps = 6/135 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + + D ++ + + + + IL L KAG++ TV
Sbjct: 29 MQISSRFTIALHIFTCVEYFKDREKITSDFLSGSISSNPVIIRNILSQLRKAGLI-TVAR 87
Query: 60 RRGGVRLCRPADQITILDVVKATEESFF--VAECFASHKIDCPLVGSC--GLTSVLRKAL 115
GG+ + R +I+ D+ A E + S CP+ + L L K
Sbjct: 88 GTGGIEITRDLSEISFYDIYMAVEAVKEEGLFHFHESPNPLCPVGKNIHRLLDDKLVKIQ 147
Query: 116 NAFFDVLTQYSIECL 130
A + + +Y++ +
Sbjct: 148 EAMENKMKEYTLLDI 162
>gi|226223067|ref|YP_002757174.1| hypothetical protein Lm4b_00463 [Listeria monocytogenes Clip81459]
gi|225875529|emb|CAS04232.1| Hypothetical protein of unknown function [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328467735|gb|EGF38787.1| hypothetical protein LM1816_01772 [Listeria monocytogenes 1816]
gi|328475916|gb|EGF46640.1| hypothetical protein LM220_06157 [Listeria monocytogenes 220]
gi|332310865|gb|EGJ23960.1| Transcription regulator [Listeria monocytogenes str. Scott A]
Length = 161
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + KI+ L K+ ++ T G
Sbjct: 7 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQTG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + L S
Sbjct: 67 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLASKYDLLQQK 125
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 126 IEFEMEKIKLDSIVRDISVLE 146
>gi|47092552|ref|ZP_00230341.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
gi|47019144|gb|EAL09888.1| conserved hypothetical protein [Listeria monocytogenes str. 4b
H7858]
Length = 210
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + KI+ L K+ ++ T G
Sbjct: 56 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQTG 115
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + L S
Sbjct: 116 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLASKYDLLQQK 174
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 175 IEFEMEKIKLDSIVRDISVLE 195
>gi|258612017|ref|ZP_05711748.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293596338|ref|ZP_05230752.2| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|293596971|ref|ZP_05266116.2| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|300766416|ref|ZP_07076372.1| hypothetical protein LMHG_12058 [Listeria monocytogenes FSL N1-017]
gi|258607723|gb|EEW20331.1| conserved hypothetical protein [Listeria monocytogenes FSL R2-503]
gi|293584310|gb|EFF96342.1| conserved hypothetical protein [Listeria monocytogenes HPB2262]
gi|293594995|gb|EFG02756.1| conserved hypothetical protein [Listeria monocytogenes FSL J1-194]
gi|300512882|gb|EFK39973.1| hypothetical protein LMHG_12058 [Listeria monocytogenes FSL N1-017]
Length = 182
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/141 (20%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + KI+ L K+ ++ T G
Sbjct: 28 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRKIMSNLKKSNLITTQTG 87
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + L S
Sbjct: 88 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCIVGANIQQVLASKYDLLQQK 146
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ + ++ +VR+ S ++
Sbjct: 147 IEFEMEKIKLDSIVRDISVLE 167
>gi|325519578|gb|EGC98937.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp. TJI49]
Length = 105
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 64 VRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
+RL + ++T+ +VV+ATE F + CF + C + C L VL A +AFF
Sbjct: 1 MRLFPASLRLTVGEVVRATEADFALVGCFAADAGSRGCVIEPQCRLKGVLAAARDAFFAE 60
Query: 122 LTQYSIECLVRNRSSIKKIFN 142
L ++++ L SS+ +
Sbjct: 61 LDRHTLGELAAPASSLVSLLG 81
>gi|330718798|ref|ZP_08313398.1| BadM/Rrf2 family transcriptional regulator [Leuconostoc fallax KCTC
3537]
Length = 131
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + + +L Y AI+ ++ +QIA++ + + + +I+ L KA ++ + G+
Sbjct: 1 MKNSTKLSDAMHILTYIAINPNHDLSSTQIAQSVNSNPVVIRRIMSQLKKANLLLSENGK 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
+ I++LDV A E + +CP+
Sbjct: 61 ATPSLAH-DSHNISMLDVYHAVENEPTFLKIDDQTNPNCPIGSQIKT 106
>gi|145589828|ref|YP_001156425.1| BadM/Rrf2 family transcriptional regulator [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
gi|145048234|gb|ABP34861.1| transcriptional regulator, BadM/Rrf2 family [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 195
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 57/136 (41%), Gaps = 13/136 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M +TK + L+ A H+ + +IA+ +S + +L+PL ++G+V ++
Sbjct: 1 MEVTKAVKVALNTLVDIASHSNKGQLVTVPEIAQRLNMSISRIELLLRPLRESGLVIGIK 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
GR GG +L + ITI D+V A + + S + +
Sbjct: 61 GRTGGYQLSKDPRIITIKDIVLAM-----------NKIKKRKVEVSDIAKDLYQSLEAYM 109
Query: 119 FDVLTQYSIECLVRNR 134
+ ++ ++ +++
Sbjct: 110 MNCISNVTLASAIKDY 125
>gi|229020328|ref|ZP_04177094.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
gi|229026559|ref|ZP_04182908.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228734736|gb|EEL85381.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1272]
gi|228740964|gb|EEL91196.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH1273]
Length = 157
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
Y + +L +++ +S +L K+++ LV+AG+V +V G +GG RL
Sbjct: 10 YALLLLNRL--PKQTMLSGESLSQQLHVSPTYLQKLMRKLVRAGLVSSVPGVKGGFRLQA 67
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYS 126
++I I DV A E + L + C L+ V+ +A A+ +L + +
Sbjct: 68 VPEKIRIYDVYIAVEGLESLYRSNGIFHTMFQLKENTTCLLSDVMEEAEYAWKSILKRTT 127
Query: 127 IECL 130
I L
Sbjct: 128 IASL 131
>gi|315182618|gb|ADT89531.1| transcriptional regulator, BadM/Rrf2 family [Vibrio furnissii NCTC
11218]
Length = 124
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
P Q A + + + + + L AG V + +G+ GG L ++T+LD+ +A
Sbjct: 5 KQPMTSEQFATMLGTNAVVIRRTMAGLRDAGYVTSTKGQGGGWTLSCDLQRVTLLDIYQA 64
Query: 82 TEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
E + F + +C + + L VL +A +Q S+ L +
Sbjct: 65 VGEPKIFSIGFDNVNPNCVVEKAVNASLRDVLHEAEVLLLTRFSQISLADLSQE 118
>gi|300172524|ref|YP_003771689.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
gi|299886902|emb|CBL90870.1| transcriptional regulator [Leuconostoc gasicomitatum LMG 18811]
Length = 168
Score = 65.7 bits (159), Expect = 2e-09, Method: Composition-based stats.
Identities = 38/147 (25%), Positives = 67/147 (45%), Gaps = 16/147 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ + + VL+ A+ D P + +++ +SE +L K ++ LV AGIV+ +
Sbjct: 1 MKMSHAVEQSLVVLVMLALQKDDLPVKSYLLSDRLEVSESYLKKTMRKLVVAGIVQAIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAE-------CFASHKIDCPLVGSCG------ 106
+ GG RL RP +IT+LDV +A E F S + + +
Sbjct: 61 KEGGFRLARPISKITLLDVYQAIEGIGSFIHSTQLADRIFLSQQSNKRIEDVQQALEVAT 120
Query: 107 --LTSVLRKALNAFFDVLTQYSIECLV 131
+ +V +A F + L Y+I L+
Sbjct: 121 NDVLTVFNEAEQDFKNRLQNYTIAKLL 147
>gi|188583718|ref|YP_001927163.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium populi
BJ001]
gi|179347216|gb|ACB82628.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
populi BJ001]
Length = 154
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 49/125 (39%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + P +A + + + +I+ L G V + +G GG R+
Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGMMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWRIACDV 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ +A A S C + + + + R+A L + ++
Sbjct: 70 QAVTLRDIYEALGAPEIFAMGNRSEAPGCLVEQAVNAAMDASFREAEALLMAQLGRITLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|159184929|ref|NP_354795.2| hypothetical protein Atu1813 [Agrobacterium tumefaciens str. C58]
gi|159185848|ref|NP_356954.2| hypothetical protein Atu3663 [Agrobacterium tumefaciens str. C58]
gi|159140208|gb|AAK87580.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
gi|159140982|gb|AAK89739.2| conserved hypothetical protein [Agrobacterium tumefaciens str. C58]
Length = 140
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 7/136 (5%)
Query: 1 MHLTKRTDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + VL++ + +IA+ + + + + L L ++GIV +
Sbjct: 2 MK--TDGRLARMLHVLVHMGLLGGRE-TSERIAQMLNTNPVVVRRTLGALRESGIVVSEG 58
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLV--GSCGLTSVLRKALN 116
GR GG +L R DQIT+LDV +A E + + +CP+ + L A
Sbjct: 59 GRGGGWKLIRSLDQITVLDVQRALVEGQMLPAPLSKDHPNCPVERASNAVLERAHCLAEA 118
Query: 117 AFFDVLTQYSIECLVR 132
A ++ ++ +
Sbjct: 119 ALRTAYSETTLAQIAE 134
>gi|121607635|ref|YP_995442.1| BadM/Rrf2 family transcriptional regulator [Verminephrobacter
eiseniae EF01-2]
gi|121552275|gb|ABM56424.1| transcriptional regulator, BadM/Rrf2 family [Verminephrobacter
eiseniae EF01-2]
Length = 174
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 7/129 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + +L + H IA+ ++ + +I+ LV+AG++ + RG
Sbjct: 1 MK-STKFVTACYILSFVTYHGPDMIPTQTIAKWVNVNASRVRQIVARLVRAGLLASTRGG 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KALN 116
GGV + R IT+LDV A E C + D C + SVL +
Sbjct: 60 EGGVVIGRAPSDITLLDVFDAVAEQDTALFCVDNPFSDW--KDRCRVHSVLTTMRGELER 117
Query: 117 AFFDVLTQY 125
F L
Sbjct: 118 DFRSKLANT 126
>gi|255326646|ref|ZP_05367722.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296]
gi|255295863|gb|EET75204.1| Transcriptional regulator [Rothia mucilaginosa ATCC 25296]
Length = 164
Score = 65.3 bits (158), Expect = 2e-09, Method: Composition-based stats.
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 6/133 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + VL + ++ +A + + ++ KI+ L KA I+ + RG+ G
Sbjct: 23 TKFSVALHVLTMIS-ESEKTLSSEDLARSVGTNASYIRKIITLLKKADILSSQRGKP-GY 80
Query: 65 RLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFD 120
+L RP + I++LD+ A +E S + + +CP+ + + +
Sbjct: 81 QLTRPVENISLLDIYLAVQESRSINLFHTHHNANEECPVGAHILQAVNPIFEETQRHLAQ 140
Query: 121 VLTQYSIECLVRN 133
L Q S+ ++ N
Sbjct: 141 DLAQRSLRNVITN 153
>gi|315647519|ref|ZP_07900621.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
gi|315276958|gb|EFU40299.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
Length = 160
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 31/137 (22%), Positives = 57/137 (41%), Gaps = 4/137 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
MH+ + + L+ + D I++ S + K+L+ LV A I+ +V G
Sbjct: 1 MHMKTGVEQSVYALVLLNMLPDKAVLPGEAISQQLGASATYFQKLLRKLVTADIITSVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA---SHKIDCPLVGSCGLTSVLRKALN 116
+GG RL + + I + DV A E + C LT+++ +A +
Sbjct: 61 IKGGFRLKKKPEDIRVYDVYLAVEGQQSLYSSHGILVDMLDLEKEESCCLLTNLMEEAES 120
Query: 117 AFFDVLTQYSIECLVRN 133
++ VL + +I L
Sbjct: 121 SWKAVLKRETIASLSEE 137
>gi|257064536|ref|YP_003144208.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
20476]
gi|256792189|gb|ACV22859.1| predicted transcriptional regulator [Slackia heliotrinireducens DSM
20476]
Length = 152
Score = 65.3 bits (158), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/124 (21%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ +L+ P +QIAE+ + ++ ++ L AGI+ + GR G L P
Sbjct: 9 AVHLLI-LVSEAQTPMSSAQIAESIGTNPSWVRRLATALRGAGIIASRPGR-TGFVLAVP 66
Query: 70 ADQITILDVVKAT--EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQY 125
AD++T+LDV +A +E+ V + + C + + + A L
Sbjct: 67 ADELTLLDVYRAACGQETVRVFDAHRNPSDKCIVGRHIRPVIGDLFADVDEAAMRALEGR 126
Query: 126 SIEC 129
++
Sbjct: 127 TLAD 130
>gi|254421022|ref|ZP_05034746.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
gi|196187199|gb|EDX82175.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
Length = 162
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 11/144 (7%)
Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ L++ A H P Q+A + + + + + L + G+V + +G GG RL
Sbjct: 11 LHALLHMAEHEARTGAPMTSDQLAVCLSTNPVVVRRTMAGLREQGLVASEKGHGGGWRLA 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQY 125
RP DQ+T+ V A E E C + + L A L +
Sbjct: 71 RPLDQVTLGQVNTALGEPGLFPEAPPVEADGCLVEAAVNDALAGTYAAARALLVARLNEI 130
Query: 126 SIECLVRN------RSSIKKIFNA 143
++ L + + + NA
Sbjct: 131 TLADLAADFARRMAEHPKRDLLNA 154
>gi|315185408|gb|EFU19180.1| transcriptional regulator, BadM/Rrf2 family [Spirochaeta
thermophila DSM 6578]
Length = 145
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+Y + L + + ++A + + E L KILQ L +AG++ V+G GG L
Sbjct: 19 EYALIALAHLSRVRG-LVSSRELASSTGLPEARLRKILQRLGRAGVLRAVQGAHGGYVLE 77
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
R ++TI +V +A +E + C C + C +
Sbjct: 78 RSLSELTIGEVARALDERV-ILPCGRDG---CEVPEFCVMRP 115
>gi|317053397|ref|YP_004119164.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
gi|316953136|gb|ADU72608.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
Length = 140
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 4/132 (3%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ + + VL++ A + Q+AE + + + + L +AG V + +G GG
Sbjct: 5 TRLSRV-LHVLVHLACDSGNY-TSQQLAEMLDTNAALVRRTMAGLREAGYVRSEKGHNGG 62
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDV 121
L Q+T+LD+ KA + C + + L L++A + +
Sbjct: 63 WSLSCDPAQVTLLDIYKAVGITHLYNLGINRDNPHCLIENAVNDELDGALKQAESLLMNR 122
Query: 122 LTQYSIECLVRN 133
L + ++ L
Sbjct: 123 LNEITLSHLCNK 134
>gi|81429434|ref|YP_396435.1| hypothetical protein LSA1822 [Lactobacillus sakei subsp. sakei 23K]
gi|78611077|emb|CAI56130.1| Hypothetical protein LCA_1822 [Lactobacillus sakei subsp. sakei
23K]
Length = 171
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT+ + +++ A ++ I S+ +L KI++ LV AG+V++V G
Sbjct: 1 MQLTRAFEQATCIIVLLATQDPEHTISSEVIHHRLGGSQTYLRKIIRKLVVAGLVKSVSG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV------AECFASHKIDCPLVGSCGLTSVLRK 113
GG L RPA +++I DVV ATE + + G+ + + K
Sbjct: 61 NSGGFTLARPASEVSIYDVVLATEGQIKSYPDTGKLDTVFNDFQPVAKQGTLIINAAFHK 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A + + L + ++ L+
Sbjct: 121 ADMLWANELKKQTVSGLI 138
>gi|169335460|ref|ZP_02862653.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM
17244]
gi|169258198|gb|EDS72164.1| hypothetical protein ANASTE_01874 [Anaerofustis stercorihominis DSM
17244]
Length = 141
Score = 64.9 bits (157), Expect = 3e-09, Method: Composition-based stats.
Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 4/132 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG-RR 61
+ + L++ H +I+E CI+ KIL L KAG+V+T G +
Sbjct: 1 MNSEFSVSVHALVFLNHHYKEFKTSEEISENICINPARARKILSKLKKAGLVKTREGSVK 60
Query: 62 GGVRLCRPADQITILDVVKATEES-FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAF 118
GG A IT+LDV +A ++ + ++C + G + V +
Sbjct: 61 GGYSFVLNAANITLLDVYEAIGNKVVDISWRSGNVNMECLIASGMGDIMDGVYERLDEVC 120
Query: 119 FDVLTQYSIECL 130
+ L + +I+ +
Sbjct: 121 KEELNKITIKDI 132
>gi|307718275|ref|YP_003873807.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM
6192]
gi|306532000|gb|ADN01534.1| hypothetical protein STHERM_c05690 [Spirochaeta thermophila DSM
6192]
Length = 145
Score = 64.9 bits (157), Expect = 4e-09, Method: Composition-based stats.
Identities = 26/102 (25%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+Y + L + + ++A + + E L KILQ L +AG++ V+G GG L
Sbjct: 19 EYALIALAHLSRVRG-LVSSRELASSTGLPEARLRKILQRLGRAGVLRAVQGVHGGYVLE 77
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS 109
R ++TI +V +A +E + C C + C +
Sbjct: 78 RSLSELTIGEVARALDERV-ILPCGRDG---CEVPEFCVMRP 115
>gi|310829321|ref|YP_003961678.1| transcriptional regulator family protein [Eubacterium limosum
KIST612]
gi|308741055|gb|ADO38715.1| transcriptional regulator family protein [Eubacterium limosum
KIST612]
Length = 138
Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 46/136 (33%), Gaps = 13/136 (9%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ H +AE C + + K++ L KAG+V+T G G
Sbjct: 1 MTGEFSIAVHALVFLNHHQGDILSSEALAENVCTNPARIRKVMAKLKKAGLVKTKSGSEG 60
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
G + + + +A ++ C + S + ++ F
Sbjct: 61 GYYFDLDPFSVNLRLICEAIGGRV-----VSTSWRSGDSEMDCLIASGMADIMDEIFMSL 115
Query: 120 -----DVLTQYSIECL 130
L + ++ +
Sbjct: 116 DAAGKKELEKTTVGDI 131
>gi|160939845|ref|ZP_02087192.1| hypothetical protein CLOBOL_04736 [Clostridium bolteae ATCC
BAA-613]
gi|158437279|gb|EDP15044.1| hypothetical protein CLOBOL_04736 [Clostridium bolteae ATCC
BAA-613]
Length = 145
Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ H +A C + + K++ L KA +V+T G G
Sbjct: 1 MTSEFTIAVHALVFL-NHKGTVFSSEGLAANVCTNAARIRKVMAKLKKADLVKTKEGVDG 59
Query: 63 GVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
G R + + + V +A + F + + + C + + + +
Sbjct: 60 GYLFHRDSRDVNLSMVAEALDTPFVAASWKSGNPHMACLISSGMAGIMDELYGELNQCCQ 119
Query: 120 DVLTQYSIECL 130
L + +I L
Sbjct: 120 AYLEKVTIADL 130
>gi|225386837|ref|ZP_03756601.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme
DSM 15981]
gi|225047063|gb|EEG57309.1| hypothetical protein CLOSTASPAR_00585 [Clostridium asparagiforme
DSM 15981]
Length = 142
Score = 64.6 bits (156), Expect = 4e-09, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 6/129 (4%)
Query: 7 TDY--GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+DY + L+Y H ++AE C + + K++ L KAG V+T G GG
Sbjct: 3 SDYCVAVHALVYL-NHKAKVLSSEELAENICTNPARVRKVMAKLKKAGFVKTKEGSEGGY 61
Query: 65 RLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDV 121
+ ADQ+T+ + +A E F A + C + + +
Sbjct: 62 LFDQDADQVTLDQIAQALEIRFVDTAWKSGDTDMKCLVASGMAGLMDEIFDDLNEQCRKR 121
Query: 122 LTQYSIECL 130
L + +I L
Sbjct: 122 LKEITIGTL 130
>gi|218680925|ref|ZP_03528822.1| hypothetical protein RetlC8_19586 [Rhizobium etli CIAT 894]
Length = 158
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/141 (18%), Positives = 45/141 (31%), Gaps = 20/141 (14%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ R + L AI+ P R +A + + + +L L AG G GG
Sbjct: 16 STRFVVAVHTLAILAINEGRPVRSEDLAFSANTNPTVIRSLLSGLADAGFTTAQLGAGGG 75
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
L + I +LDV +A E+S + + C + R N L
Sbjct: 76 ALLAKKPSHIALLDVYRAVEDSELFSMHRSPPNSVCVVG---------RNIQNVLRPTLD 126
Query: 124 Q-----------YSIECLVRN 133
+ ++ +
Sbjct: 127 KAQAALEAELACVTVADIAAE 147
>gi|58337328|ref|YP_193913.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM]
gi|58254645|gb|AAV42882.1| hypothetical protein LBA1034 [Lactobacillus acidophilus NCFM]
Length = 153
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + K + VL+ A+ + P + +++ +S+ +L KIL L ++
Sbjct: 1 MKINKSVEQATYVLLILALQKKHTPLKSRVLSKTMGVSDSYLKKILMMLKHNELITASAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKA 114
++ G +L RP D+I++ DV+ A E + E D + + L+
Sbjct: 61 KKVGYQLARPIDEISLKDVLYALELNHNQIEFNHLANNIFDDQDHVEESENKIINTLQAG 120
Query: 115 LNAFFDVLTQYSIECLVRN 133
L++F+D L + + L+++
Sbjct: 121 LSSFYDELDELKLSDLLKD 139
>gi|218680758|ref|ZP_03528655.1| putative transcriptional regulator protein [Rhizobium etli CIAT
894]
Length = 122
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + ++ + A + +AE + + +L K LQ L +A +V+T G
Sbjct: 1 MILKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRK 113
GG RL R + +I LD+V+A E C C C + ++ +
Sbjct: 61 PSGGYRLARSSSEINFLDIVEAVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWE 120
Query: 114 AL 115
A
Sbjct: 121 AD 122
>gi|226197582|ref|ZP_03793157.1| transcriptional regulator [Burkholderia pseudomallei Pakistan 9]
gi|225930191|gb|EEH26203.1| transcriptional regulator [Burkholderia pseudomallei Pakistan 9]
Length = 141
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/123 (21%), Positives = 50/123 (40%), Gaps = 3/123 (2%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+L++ H + IA+ + + + +++ L G V + +G GG L D
Sbjct: 1 MLIHMDRHVER-ATSEAIAKMLGTNPVVVRRMMAGLRDQGYVRSEKGHGGGWELVCDLDA 59
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECL 130
IT+LDV +A E + + + DC + +T L +A ++ L
Sbjct: 60 ITLLDVYRAIGEPPLFSIGPHAEQSDCLVEKAVDARMTEALGEAQALLLAHFGAITVGDL 119
Query: 131 VRN 133
R+
Sbjct: 120 ARD 122
>gi|221324215|ref|ZP_03605509.1| hypothetical protein BsubsS_15007 [Bacillus subtilis subsp.
subtilis str. SMY]
Length = 97
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 14 LMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
++ A H + P + IA+ +SE +L +++ PL AG+V+++RG GG L D
Sbjct: 1 MIELAKKHGEGPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 60
Query: 73 ITILDVVKATEESFFVAEC 91
IT D+++ E + +C
Sbjct: 61 ITAGDIIRVLEGPISLLKC 79
>gi|318041251|ref|ZP_07973207.1| transcriptional regulator, BadM/Rrf2 family protein [Synechococcus
sp. CB0101]
Length = 148
Score = 64.6 bits (156), Expect = 5e-09, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 3/138 (2%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ ++ L+ A ++ IA A + L ++L L +AG+VE RGR GG
Sbjct: 6 RSGQQALQALLELAEAPQQWRSVNDIAAAQALPAPMLEQLLLQLRRAGLVEARRGRLGGY 65
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
RL R I + +V+ A + E D L S+ R+ A L Q
Sbjct: 66 RLQRQPAAIPVAEVLAAVGADIQLVE---PDAPDSNQAEEQVLRSMARRLQRAMERELMQ 122
Query: 125 YSIECLVRNRSSIKKIFN 142
+++E L+ + S ++ +
Sbjct: 123 FNLEELLFDLRSCRETLS 140
>gi|293402324|ref|ZP_06646461.1| Rrf2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304171|gb|EFE45423.1| Rrf2 family protein [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 148
Score = 64.2 bits (155), Expect = 5e-09, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 49/136 (36%), Gaps = 8/136 (5%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ + Y H ++AE C++ + + K++ L G+++T +G GG
Sbjct: 8 AVHAMAYLRKHP-RLISSEELAENICVNPVRVRKVMAKLKAYGLIDTKQGLSGGYSFSIQ 66
Query: 70 ADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV----LTQ 124
+ +T+ + A + + + C + G+ V+ L
Sbjct: 67 NETVTLSQIYDALQMRIFHSNWRSGNAHLKCIVSS--GMAQVMDDLYETMEATCYEKLKA 124
Query: 125 YSIECLVRNRSSIKKI 140
SI +V+ + +
Sbjct: 125 ISICDVVKELEQLYAL 140
>gi|296124240|ref|YP_003632018.1| hypothetical protein Plim_4008 [Planctomyces limnophilus DSM 3776]
gi|296016580|gb|ADG69819.1| protein of unknown function UPF0074 [Planctomyces limnophilus DSM
3776]
Length = 187
Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 7/132 (5%)
Query: 5 KRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
R VL Y A + ++ + + + ++L L KAG++ET RG
Sbjct: 3 TRFTVAAHVLGYLAWQGEQGVEWVSSDELGRSINTHSVVVRRLLTQLQKAGLIETRRGAS 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFAS--HKIDCPLVGSC--GLTSVLRKALNA 117
GG RL RPA I + +V A ES F + +C + L V+ +A
Sbjct: 63 GGSRLARPASAIHLGEVFDAVVESGTSLISFPREVERDECLVGEHIEAVLREVIAEAEAV 122
Query: 118 FFDVLTQYSIEC 129
F L + S+
Sbjct: 123 FRRNLGRTSVAE 134
>gi|307244538|ref|ZP_07526643.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678]
gi|306492065|gb|EFM64113.1| transcriptional regulator [Peptostreptococcus stomatis DSM 17678]
Length = 141
Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L+Y +A++ + ++ KI+ L A I+E+ +G++ G+
Sbjct: 3 TKFSIALHILVYI-EETKDIVTSELLAKSVGTNASYIRKIIILLKSANIIESKQGKK-GM 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVL 122
L +D++T+ V A + + +CP+ + L + ++ L
Sbjct: 61 SLKIASDELTLDMVYFAVYPEKELLHIHDTSNQECPVGENIREALLPIFEESEKQLILNL 120
Query: 123 TQYSIECLVRN 133
+ +++ LV N
Sbjct: 121 RKETLKSLVEN 131
>gi|163853446|ref|YP_001641489.1| hypothetical protein Mext_4048 [Methylobacterium extorquens PA1]
gi|163665051|gb|ABY32418.1| protein of unknown function UPF0074 [Methylobacterium extorquens
PA1]
Length = 154
Score = 63.8 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + P +A + + + +I+ L G V + +G GG R+
Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWRIACDF 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ A A S C + + + R+A L + ++
Sbjct: 70 GAVTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|315281000|ref|ZP_07869741.1| transcription regulator [Listeria marthii FSL S4-120]
gi|313615357|gb|EFR88761.1| transcription regulator [Listeria marthii FSL S4-120]
Length = 161
Score = 63.8 bits (154), Expect = 7e-09, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 59/141 (41%), Gaps = 4/141 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I +L Y I + IA + + + +I+ L KA ++ T G
Sbjct: 7 MKYSIQFSDAIHILAYIEIFKNTNLLSSEIIAGSVKTNPANIRRIMSNLKKADLITTQTG 66
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
+ + L RP ++I++LDV K+ E + + DC + + LTS
Sbjct: 67 KANPI-LARPPEEISLLDVYKSIEGNTNLIHVDPKTNPDCVVGANIQQVLTSKYDLLQKK 125
Query: 118 FFDVLTQYSIECLVRNRSSIK 138
+ Q ++ +V + S ++
Sbjct: 126 LELEMEQIKLDSIVHDISVLE 146
>gi|218532306|ref|YP_002423122.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Methylobacterium chloromethanicum CM4]
gi|218524609|gb|ACK85194.1| transcriptional regulator, BadM/Rrf2 family [Methylobacterium
chloromethanicum CM4]
Length = 154
Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 48/125 (38%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + P +A + + + +I+ L G V + +G GG ++
Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDF 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ +A A S C + + + R+A L + ++
Sbjct: 70 GAVTLRDIYEALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|172056218|ref|YP_001812678.1| BadM/Rrf2 family transcriptional regulator [Exiguobacterium
sibiricum 255-15]
gi|171988739|gb|ACB59661.1| transcriptional regulator, BadM/Rrf2 family [Exiguobacterium
sibiricum 255-15]
Length = 160
Score = 63.8 bits (154), Expect = 8e-09, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 56/133 (42%), Gaps = 3/133 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + + ++ + I++ S + K+L+ LV A ++ +V G
Sbjct: 1 MQMKTGVEQSVYAMLLLTFLPEKGVLPGEFISQQLGASPTYFQKLLRKLVSADLLISVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFV--AECFASHKIDCPLVGSCGLTSVLRKALNA 117
+GG RL + I + D+ +A E + + + C L+ ++ +A +
Sbjct: 61 AKGGFRLKASPETIRVFDIYEAIEGKQSLYASSGVFEDLMGIQDQNICLLSDLMAEAEQS 120
Query: 118 FFDVLTQYSIECL 130
+ +L + +I+ +
Sbjct: 121 WQSILKRETIDSI 133
>gi|119384163|ref|YP_915219.1| BadM/Rrf2 family transcriptional regulator [Paracoccus
denitrificans PD1222]
gi|119373930|gb|ABL69523.1| transcriptional regulator, BadM/Rrf2 family [Paracoccus
denitrificans PD1222]
Length = 156
Score = 63.8 bits (154), Expect = 9e-09, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +++ + VL++ H QIA+ + + + +++ L + GIV + +G
Sbjct: 5 LRMSRM----LHVLIHMDRHVGR-ATSEQIAQMISTNAVVVRRMMAGLRERGIVSSEKGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG +L P +I++ DV +A + C + L + L +A
Sbjct: 60 GGGWQLACPLAEISLRDVYEAVGHPPLFNIGPQADPSPCLVEQAVDARLDATLAEAETRL 119
Query: 119 FDVLTQYSIECLVRN 133
++E + ++
Sbjct: 120 LAQFAAITVEEVAQD 134
>gi|328958167|ref|YP_004375553.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
gi|328674491|gb|AEB30537.1| putative transcriptional regulator [Carnobacterium sp. 17-4]
Length = 156
Score = 63.4 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58
M LTK + I +L + ++Y P + + S ++ KI++ LV +G+ ++
Sbjct: 1 MKLTKGLEQAICILAMLSTQDNYIPITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESF-------FVAECFASHKIDCPLVGSCGLTSVL 111
G GG L + ++I +L++V+A E + + F+ +T+
Sbjct: 61 GSNGGFILAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSDVGEPASNGEKTLVTT-F 119
Query: 112 RKALNAFFDVLTQYSIECLV 131
+A + + L + +++ L+
Sbjct: 120 EEADKQYTNFLKRQTLDQLI 139
>gi|262066034|ref|ZP_06025646.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
gi|291380285|gb|EFE87803.1| Rrf2 family protein [Fusobacterium periodonticum ATCC 33693]
Length = 140
Score = 63.4 bits (153), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ + +L Y D +A++ + + KIL L I+E+ +G++ G+
Sbjct: 3 TKFSIALHILAYI-EETDNTVTSELLAKSVGTNASHIRKILTLLKDVNIIESQQGKK-GI 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
L A+++++ + + + DCP+ + L + ++ L
Sbjct: 61 ALKIKANELSLDKIYLGVYPEKELLHIHDTANQDCPVGATIKEALLPIFEESERQLILNL 120
Query: 123 TQYSIECLVRN 133
+++ L+ +
Sbjct: 121 KSKTLKSLIED 131
>gi|296115596|ref|ZP_06834223.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
gi|295977845|gb|EFG84596.1| transcriptional regulator [Gluconacetobacter hansenii ATCC 23769]
Length = 106
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA----SHKIDCP 100
+ L +AG+V + RG GG RL RPAD+I D+++ T+ + C + DC
Sbjct: 1 MSDLRRAGLVTSQRGSGGGYRLARPADRIMFADIIRVTDGPISMLPCVSRNFYEQCEDCS 60
Query: 101 LVGSCGLTSVLRKALNAFFDVLTQYSIEC--LVRNRSS 136
C L + + A D+L S+ L+
Sbjct: 61 NEEICALRKIFAEVRTAVADILDHRSLADALLLERPEK 98
>gi|16080810|ref|NP_391638.1| transcriptional regulator [Bacillus subtilis subsp. subtilis str.
168]
gi|221311722|ref|ZP_03593569.1| hypothetical protein Bsubs1_20306 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316048|ref|ZP_03597853.1| hypothetical protein BsubsN3_20217 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221320959|ref|ZP_03602253.1| hypothetical protein BsubsJ_20160 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325244|ref|ZP_03606538.1| hypothetical protein BsubsS_20326 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|6137293|sp|P71047|YWGB_BACSU RecName: Full=Putative HTH-type transcriptional regulator ywgB
gi|1561569|emb|CAB02493.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
gi|2636294|emb|CAB15785.1| putative transcriptional regulator [Bacillus subtilis subsp.
subtilis str. 168]
gi|291486345|dbj|BAI87420.1| hypothetical protein BSNT_05747 [Bacillus subtilis subsp. natto
BEST195]
Length = 156
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 57/116 (49%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
I++ +S +L K+++ LV+AG+ E++ G +GG L +P IT+ DV +A E
Sbjct: 26 LTSEAISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVEG 85
Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
+ + + C L +V+ + + + +++ + S++ ++ + +
Sbjct: 86 RGSMYQGKGLLQSVFEGESHCVLETVMAEIEDKWSNLMREESLQHVMDRVGELYDL 141
>gi|315647630|ref|ZP_07900732.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
gi|315277069|gb|EFU40410.1| transcriptional regulator, BadM/Rrf2 family protein [Paenibacillus
vortex V453]
Length = 152
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ L+ H+ IA + + +IL+ L A ++E+ GR GG RL +
Sbjct: 26 AVQALVALERHSGK-CSSGDIASYLHLESTLIRRILKTLAHADMIESREGRDGGYRLKKN 84
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
A IT+ +V + +++ +L + + +L +I
Sbjct: 85 ASDITLAEVYSILQVHNSISDGMLDATTGHCFAAEIRESFAGILSEIEESTLKILESRTI 144
Query: 128 ECLVRN 133
+V
Sbjct: 145 ADMVEQ 150
>gi|325928913|ref|ZP_08190075.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
91-118]
gi|325540709|gb|EGD12289.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas perforans
91-118]
Length = 157
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A P QIA + + + + + L AG V++ RG
Sbjct: 6 RLSRM----LHVLLHMARSP-QPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHN 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG ++ Q+T+LDV +A A C + + + L A
Sbjct: 61 GGWQIGCDLAQVTLLDVHRAVGGPHLFAIGADHPNPQCGVERVVNAAIADALAHAEALLL 120
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ L ++
Sbjct: 121 QRLGTVTLAALASEFDAL 138
>gi|329937551|ref|ZP_08287109.1| hypothetical protein SGM_2601 [Streptomyces griseoaurantiacus M045]
gi|329303427|gb|EGG47314.1| hypothetical protein SGM_2601 [Streptomyces griseoaurantiacus M045]
Length = 148
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 55/130 (42%), Gaps = 2/130 (1%)
Query: 4 TKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + VL Y A + + +P +++ + ++ +++ ++L PL +AG+V + G RG
Sbjct: 6 NTQFAVAVHVLTYLAGVTDGHPVSSEELSSSANVNAVYVRRVLGPLREAGLVRSRPGVRG 65
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL-NAFFDV 121
G L I + V + + V + L +A+ ++
Sbjct: 66 GWELAGDPAGIPLAQVWSLLQGTDPVLGLHGPDPACATGRQVQKSLTTLDRAVADSVTAT 125
Query: 122 LTQYSIECLV 131
L ++++ ++
Sbjct: 126 LRRFTVRDVL 135
>gi|260427698|ref|ZP_05781677.1| transcriptional regulator [Citreicella sp. SE45]
gi|260422190|gb|EEX15441.1| transcriptional regulator [Citreicella sp. SE45]
Length = 156
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 7/135 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ +++ + VL++ H QIA+ + + + +++ L + GIV + +G
Sbjct: 5 LRMSRM----LHVLIHLDRHVGR-ATSEQIAQMISTNAVVVRRMMAGLRERGIVSSEKGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG +L P +I++ DV +A + C + L + L +A
Sbjct: 60 GGGWQLACPLAEISLRDVYEAVGHPPLFNIGPQADPSSCLVEQAVDARLDATLAEAEARL 119
Query: 119 FDVLTQYSIECLVRN 133
++E + ++
Sbjct: 120 LTQFAAITVEEVAQD 134
>gi|218662716|ref|ZP_03518646.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium etli
IE4771]
Length = 128
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 7/128 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + I + + + + +AE +S +L K LQ L AGI++TV G
Sbjct: 1 MKMGDGVEQAIHSVAMLSGLSEGGVLSAAALAEFHGVSTSYLLKHLQALSGAGILDTVPG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSCGLTSVLRK 113
RGG RL + ++I++LD++ A E C + D C +++ + +
Sbjct: 61 PRGGYRLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPCNISAAMLR 120
Query: 114 ALNAFFDV 121
A +
Sbjct: 121 AERVYRAE 128
>gi|134101553|ref|YP_001107214.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133914176|emb|CAM04289.1| transcriptional regulator, BadM/Rrf2 family [Saccharopolyspora
erythraea NRRL 2338]
Length = 146
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 59/138 (42%), Gaps = 6/138 (4%)
Query: 5 KRTDYGIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ + ++V+++ A+ + +Q+A + + K+L PL G+V +GR
Sbjct: 4 RFSR-ALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRA 62
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFF 119
GG RL RPAD+IT+ ++ + + C + C + ++ +A A
Sbjct: 63 GGARLGRPADRITLAEIYRCAVGDKPLWACSPKAEQVCLVTAHAAEYFAALTAEAEQAVL 122
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ V S+
Sbjct: 123 ASLGDRTLAESVGELRSL 140
>gi|23006957|ref|ZP_00049037.1| COG1959: Predicted transcriptional regulator [Magnetospirillum
magnetotacticum MS-1]
Length = 73
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
M LT+ TDY +R L+Y + + I++IA A ISE L K++ L +G
Sbjct: 1 MRLTRYTDYALRTLIYVGLREPRQSSIAEIAAAYGISESHLTKVVHQLGGSGW 53
>gi|323486594|ref|ZP_08091915.1| transcriptional regulator family protein [Clostridium symbiosum
WAL-14163]
gi|323692263|ref|ZP_08106504.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
WAL-14673]
gi|323399975|gb|EGA92352.1| transcriptional regulator family protein [Clostridium symbiosum
WAL-14163]
gi|323503678|gb|EGB19499.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
WAL-14673]
Length = 143
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 14/129 (10%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
G+ L++ H +AE C + + KIL L KAG+V T G GG +
Sbjct: 8 GVHALVFL-NHKKTVVSSEMVAENVCTNPARVRKILASLKKAGLVSTKEGLDGGYQFSAD 66
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTS--------VLRKALNAFFDV 121
A ++ + + A +S L +C + S + ++ +
Sbjct: 67 ASKVNLCMIADALG-----VAFVSSSWKSGNLEKNCLIASGMAGLLDGLYQQLDQKCREE 121
Query: 122 LTQYSIECL 130
L +I L
Sbjct: 122 LKHITIADL 130
>gi|78046202|ref|YP_362377.1| Rrf2 family transcriptional regulator [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|78034632|emb|CAJ22277.1| putative transcriptional regulator, Rrf2 family [Xanthomonas
campestris pv. vesicatoria str. 85-10]
Length = 157
Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A P QIA + + + + + L AG V++ RG
Sbjct: 6 RLSRM----LHVLLHMARSP-QPMTSEQIASMLSTNAVVVRRTMAGLRSAGYVQSSRGHN 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFF 119
GG ++ Q+T+LDV +A A C + + + L A
Sbjct: 61 GGWQIGCDLAQVTLLDVHRAVGGPHLFAIGADHPNPQCGVERVVNAAIADALAHAEALLL 120
Query: 120 DVLTQYSIECLVRNRSSI 137
L ++ L ++
Sbjct: 121 QRLGTVTLAALASEFDAL 138
>gi|260770102|ref|ZP_05879035.1| rrf2 family transcriptional regulator group III [Vibrio furnissii
CIP 102972]
gi|260615440|gb|EEX40626.1| rrf2 family transcriptional regulator group III [Vibrio furnissii
CIP 102972]
Length = 117
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/111 (21%), Positives = 46/111 (41%), Gaps = 2/111 (1%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
Q A + + + + + L AG V + +G+ GG L ++T+LD+ +A E
Sbjct: 1 MTSEQFATMLGTNAVVIRRTMAGLRDAGYVTSTKGQGGGWTLSCDLQRVTLLDIYQAVGE 60
Query: 85 SFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ F + +C + + L VL +A +Q S+ L +
Sbjct: 61 PKIFSIGFDNVNPNCVVEKAVNASLRDVLHEAEVLLLTRFSQISLADLSQE 111
>gi|254563375|ref|YP_003070470.1| BadM/Rrf2 family transcriptional regulator [Methylobacterium
extorquens DM4]
gi|254270653|emb|CAX26657.1| putative transcriptional regulator, BadM/Rrf2 family
[Methylobacterium extorquens DM4]
Length = 154
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/125 (17%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + P +A + + + +I+ L G V + +G GG ++
Sbjct: 11 LHVLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDF 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+T+ D+ A A S C + + + R+A L + ++
Sbjct: 70 GAVTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 ALSAD 134
>gi|300773744|ref|ZP_07083613.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
gi|300759915|gb|EFK56742.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
Length = 138
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ + D IA + I+ + + K ++ L +A +V + G+ GGVR+
Sbjct: 10 ATHIIALLMLERDTWLSSDYIAGSININPVVVRKEIRKLKEAQLVISKEGKNGGVRIAED 69
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
++ T+ DV KAT S + + +CP+ + LT V L Q SI
Sbjct: 70 INKKTLADVYKATLASDE-KGKYNNPNPNCPVGKNINNYLTIVYNDIEEQHIAYLNQISI 128
Query: 128 ECL 130
+ L
Sbjct: 129 QDL 131
>gi|167621798|ref|YP_001676583.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
gi|167351539|gb|ABZ74269.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
Length = 142
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 11/139 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M ++R + L+Y A P R ++A + S + + ++ LVKAG++ +
Sbjct: 1 MSESQRFPTAVHALVYLAHSKATPHQPVRSVELACSVNASHVGVRRVTARLVKAGLIGSQ 60
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL----TSVLRK 113
GR+GG L ++IT+ V++A + + + L + + +
Sbjct: 61 DGRKGGAWLRADPERITLDQVLEAVAGPVRL----GATPPSWADEPAGSLGTAIVAAIAQ 116
Query: 114 ALNAFFDVLTQYSIECLVR 132
A A L++ SI LV
Sbjct: 117 AEAAMLQRLSKISIADLVD 135
>gi|332687403|ref|YP_004457176.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC
35311]
gi|332371412|dbj|BAK22367.1| Rrf2 family transcriptional regulator [Melissococcus plutonius ATCC
35311]
Length = 141
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 62/141 (43%), Gaps = 8/141 (5%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M I ++M A + +D + +I++ +S +L KI + L A ++ ++
Sbjct: 1 MKFNNSFIQSIGIIMILAKLPDDGALKSQEISQRMNVSHSYLLKIAKKLKDAELINSIAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS-------CGLTSVLR 112
+ GG L + D+I+ LD++ ATE E H ID + + + ++
Sbjct: 61 KTGGYVLNKSVDKISFLDILHATEGKNSFIEGIDFHPIDSIVSSNETVEEKRIVIRNIFS 120
Query: 113 KALNAFFDVLTQYSIECLVRN 133
+A + D+L + I ++
Sbjct: 121 EAEKNYKDILNNHYISEIISQ 141
>gi|187777108|ref|ZP_02993581.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC
15579]
gi|187774036|gb|EDU37838.1| hypothetical protein CLOSPO_00653 [Clostridium sporogenes ATCC
15579]
Length = 125
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 6/126 (4%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+ + IA + + + + +++ L +AG+V + G GG L + DQIT+LDV
Sbjct: 1 MEDKNLCTSEWIAGSVNTNPVVIRRVMGMLKRAGLVNVIAG-TGGAYLLKDLDQITLLDV 59
Query: 79 VKATE--ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN- 133
+A + + + + S I+CP+ + + VL A A VL ++E +V
Sbjct: 60 YRAVDVVKEGELFQFHDSPNINCPIGANIQSVMEGVLLNAQEAMEQVLENVTMEYIVTGI 119
Query: 134 RSSIKK 139
R IKK
Sbjct: 120 RKKIKK 125
>gi|242372820|ref|ZP_04818394.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
gi|242349472|gb|EES41073.1| transcriptional regulator [Staphylococcus epidermidis M23864:W1]
Length = 143
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 20/137 (14%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + I VL + H D ++AE C++ + L +++ L + TVRG+
Sbjct: 1 MNL--EFNIAIHVLTFLTKHKDEKFNSKELAELTCLNPVQLRRVVSVLSDQHYITTVRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF--ASHKIDCPLVGSCG--LTSVLRKALN 116
GG + + + + + + + C + ++ + +
Sbjct: 59 GGGYQSNQHTASVNLATLYQQFVLNKESKHRIYTGDTSSHCDISKHIAHTMSDYYDEEIQ 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 119 LILNFYRNKTIQDVLND 135
>gi|321313316|ref|YP_004205603.1| putative transcriptional regulator [Bacillus subtilis BSn5]
gi|320019590|gb|ADV94576.1| putative transcriptional regulator [Bacillus subtilis BSn5]
Length = 156
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 57/116 (49%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
I++ +S +L K+++ LV+AG+ E++ G +GG L +P IT+ DV +A E
Sbjct: 26 LTSEAISQRLRVSPSYLKKLMRTLVQAGLAESLPGTKGGFTLTKPLADITLYDVYQAVEG 85
Query: 85 SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
+ + + C L +V+ + + + +++ + S++ ++ + +
Sbjct: 86 RGSMYQGKGLLQSVFEGESQCVLETVMAEIEDKWANLMREESLQHVMDRVGELYDL 141
>gi|194367667|ref|YP_002030277.1| BadM/Rrf2 family transcriptional regulator [Stenotrophomonas
maltophilia R551-3]
gi|194350471|gb|ACF53594.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas
maltophilia R551-3]
Length = 151
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 7/125 (5%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ V+ + H P Q+A + + ++L L +AG+V + RG GG L R
Sbjct: 10 ALHVMAHLVGHA-APRTSEQLASCLPTHPVVIRRLLAQLHRAGLVRSTRGHGGGSVLARD 68
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125
A IT+ D+ A V CP+ + S L R+A L
Sbjct: 69 AAAITLHDIYLAVGAPPLVQVGARDSGGGCPIQQ--LVNSALLEGAREAQRLLEQRLQAT 126
Query: 126 SIECL 130
+++ L
Sbjct: 127 TLDQL 131
>gi|295705354|ref|YP_003598429.1| transcriptional regulator [Bacillus megaterium DSM 319]
gi|294803013|gb|ADF40079.1| transcriptional regulator, putative [Bacillus megaterium DSM 319]
Length = 159
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTD---YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
MH+ + Y I +L + I+ S + K+L+ LV A ++ +V
Sbjct: 1 MHMKTGVEQSVYAILLLTFL--PEKAVLPGDVISTQLGGSPTYFQKLLRKLVSADLLASV 58
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKAL 115
G +GG RL + ++I I D+ A E + ++ C L+ ++ +A
Sbjct: 59 PGSKGGFRLKKTPEEIRIYDIYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118
Query: 116 NAFFDVLTQYSIECLVRN 133
+++ +L + +I L
Sbjct: 119 SSWQSILKRQTIATLTNE 136
>gi|308068918|ref|YP_003870523.1| hypothetical protein PPE_02149 [Paenibacillus polymyxa E681]
gi|305858197|gb|ADM69985.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
Length = 158
Score = 63.0 bits (152), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/137 (18%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + L+ + D I++ S + K+L+ LV + ++ +V G
Sbjct: 1 MK--TGVEQSVYALLLLTMLPDKAVLPGEAISQQLGASPTYFHKLLRKLVSSDLITSVPG 58
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPL---VGSCGLTSVLRKALN 116
+GG +L + + I + D+ A E + + L C L +++ +A
Sbjct: 59 VKGGFKLKKKPEDIRVFDIYLAIEGQQTLYSSSGIYNEMLELKKDDQCCLLANLMEEAEA 118
Query: 117 AFFDVLTQYSIECLVRN 133
++ VL + +I L +
Sbjct: 119 SWKAVLKRETIASLSAD 135
>gi|332188880|ref|ZP_08390586.1| transcriptional regulator family protein [Sphingomonas sp. S17]
gi|332011089|gb|EGI53188.1| transcriptional regulator family protein [Sphingomonas sp. S17]
Length = 145
Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 2/123 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+L A H D P R IA + + + +L L AG+ + G RGG L RP+ +
Sbjct: 1 MLALLADHGDMPLRSEDIAASVNSNAAVVRALLLRLASAGLTRSQLGNRGGAMLARPSSE 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECL 130
I ++DV A E+ F A + + P+ L ++L A + L +++ +
Sbjct: 61 IRLVDVYHAVEDRNFFAFHRQPPEGESPIDRHITPSLEAMLTPVREALEEKLADLTLDDV 120
Query: 131 VRN 133
+ +
Sbjct: 121 LTD 123
>gi|291008165|ref|ZP_06566138.1| BadM/Rrf2 family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
Length = 150
Score = 62.6 bits (151), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 10 GIRVLMYCAIHND---YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
++V+++ A+ + +Q+A + + K+L PL G+V +GR GG RL
Sbjct: 12 ALQVMLFLALAAEDGSTALSSAQLARGLRANPSLVRKLLVPLTNEGLVVCTKGRAGGARL 71
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
RPAD+IT+ ++ + + C + C + ++ +A A L
Sbjct: 72 GRPADRITLAEIYRCAVGDKPLWACSPKAEQVCLVTAHAAEYFAALTAEAEQAVLASLGD 131
Query: 125 YSIECLVRNRSSI 137
++ V S+
Sbjct: 132 RTLAESVGELRSL 144
>gi|296116889|ref|ZP_06835494.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC
23769]
gi|295976582|gb|EFG83355.1| hypothetical protein GXY_13823 [Gluconacetobacter hansenii ATCC
23769]
Length = 143
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 13/131 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ TD+ ++ L+ + P + +I+ C +S + +LQ L G++E
Sbjct: 1 MQLSLHTDHAVKFLICM-TQSGMPACVQEISGRCGLSTREVAGVLQDLHHCGLIEHATTG 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
G +RL + ++ I DV+++ E + + A AF D
Sbjct: 60 EGFLRLRKDPARVRIGDVIRSIEAVRPMTPKEG------------AFAPMFDMAHAAFVD 107
Query: 121 VLTQYSIECLV 131
L YS+ L
Sbjct: 108 ALNDYSLSDLA 118
>gi|221369698|ref|YP_002520794.1| hypothetical protein RSKD131_3861 [Rhodobacter sphaeroides KD131]
gi|221162750|gb|ACM03721.1| Hypothetical Protein RSKD131_3861 [Rhodobacter sphaeroides KD131]
Length = 142
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 5/103 (4%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + VL++ A D P QIA + + + +I+ L G V+ RG
Sbjct: 6 RLSRL----LHVLLHMA-QTDAPMTSQQIAGMLGSNPVVVRRIMAGLRDGGYVDAERGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
GG R+ R +IT+LDV ++ A F++ + C + S
Sbjct: 61 GGWRIIRRTTEITVLDVYRSLGSPDLFAFGFSNPRPSCLVEQS 103
>gi|330685745|gb|EGG97380.1| transcriptional regulator, Rrf2 family [Staphylococcus epidermidis
VCU121]
Length = 158
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 60/149 (40%), Gaps = 7/149 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++K + GI VL+ A + ++E +S+ L KIL+ LV A ++ +
Sbjct: 1 MKISKHFEQGIYVLLILATQEGQGAVKSQTLSEKLEVSDSSLKKILRKLVVADLITSNAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRK 113
+ GG +L R + IT+ DV++A + L
Sbjct: 61 KDGGFQLNRSIEDITLKDVIEAISNGDVIEYEISHLSRRIFFNDQHIKDSEMKVKQQLNY 120
Query: 114 ALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
A+ AF + L + + L+ + K+ +
Sbjct: 121 AIQAFNEKLNELPLVELLEDEYFKHKLVD 149
>gi|310642195|ref|YP_003946953.1| transcriptional regulator, badm/rrf2 family [Paenibacillus polymyxa
SC2]
gi|309247145|gb|ADO56712.1| Transcriptional regulator, BadM/Rrf2 family [Paenibacillus polymyxa
SC2]
Length = 149
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 3/127 (2%)
Query: 10 GIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
++ L+ + + ++A+ L +IL L K G++ T GR GG L +
Sbjct: 18 AVQALVILSQEDKSIACPSIELAKYLQSEPSLLRRILSVLAKEGLIGTREGRDGGYHLRK 77
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
PA+ I ++DV ++ PL L + ++ ++ VL++Y+
Sbjct: 78 PAESIRLVDVYDVFRSDSRLSFGITETAGTHPLGKCMKSTLEDITQEMDDSIRGVLSKYT 137
Query: 127 IECLVRN 133
I L
Sbjct: 138 IADLANQ 144
>gi|309779547|ref|ZP_07674308.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA]
gi|308921788|gb|EFP67424.1| Rrf2 family protein [Ralstonia sp. 5_7_47FAA]
Length = 145
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R + +L A + P S IA + + + +++ L AG V + G
Sbjct: 1 MSTSSRFAVAVHILTLLAS-AEGPVPSSLIAGSVGTNPALIRRLVAQLADAGFVTSQMGA 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
GG L RPAD+IT+LDV + E +A + C + +T VL +
Sbjct: 60 TGGATLARPADRITLLDVFRVVEAPVLIALPPNAPNPACEVGRE--ITGVLERVTER 114
>gi|126736518|ref|ZP_01752259.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. CCS2]
gi|126714056|gb|EBA10926.1| transcriptional regulator, BadM/Rrf2 family protein [Roseobacter
sp. CCS2]
Length = 124
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A + + + IA+ + + + ++L L +AG++ + +G GG RL R A IT+
Sbjct: 1 MAADSKHMRTSADIADHAGTNPVVVRRVLGKLREAGLLTSEKGHAGGWRLARAAQDITLA 60
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
DV A +E VA C + +T+V+ + + + L++ +I +
Sbjct: 61 DVYLALDERL-VASSPNDDVPTCVVEHRLQNKITAVMEEIERSLIERLSKTNIAEV 115
>gi|167769781|ref|ZP_02441834.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM
17241]
gi|167668142|gb|EDS12272.1| hypothetical protein ANACOL_01115 [Anaerotruncus colihominis DSM
17241]
Length = 121
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 47/117 (40%), Gaps = 3/117 (2%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
+Q+ + I + F +KI++ L KA V RG GG RL + T+ D++
Sbjct: 3 EGEQVSAAQLCQRELIPQPFAYKIMRKLSKASFVSITRGADGGCRLAVDLREKTLYDLLF 62
Query: 81 ATEESFFVAECFASHKIDCPLVGS---CGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
A + FV C A CG+ + L A L +S+ ++ +
Sbjct: 63 AMDSVEFVNACMAPGYQCLWRERCGGKCGIHAQLESIQQAVDRELQSHSLASILSGK 119
>gi|266620987|ref|ZP_06113922.1| transcriptional regulator family protein [Clostridium hathewayi DSM
13479]
gi|288867368|gb|EFC99666.1| transcriptional regulator family protein [Clostridium hathewayi DSM
13479]
Length = 137
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 14/136 (10%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L+Y H +A C + + K++ L KAGI+ T G G
Sbjct: 1 MTSEFAIAVHALVYL-NHRQQTVSSEALASNVCTNPARVRKVMAKLKKAGIISTKEGLEG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD-- 120
G + + + + V A E + ++ C + S + ++ +
Sbjct: 60 GYHFEKDSSCVNLRQVCDALE-----VDFVSASWKSGDKEMDCMIASGMAAIMDEIYADL 114
Query: 121 ------VLTQYSIECL 130
L +I +
Sbjct: 115 DELCRKRLESITIASI 130
>gi|77745347|gb|ABB02574.1| putative transcriptional regulator [Lactobacillus reuteri]
Length = 134
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 19/119 (15%), Positives = 48/119 (40%), Gaps = 3/119 (2%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
++ + IA++ + + +++ L AG++ T +G RL + +I +
Sbjct: 1 MHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGAAEP-RLAKKPREINLF 59
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
D+ +A + + C + G+ L + A F+ + Q S+ ++ +
Sbjct: 60 DIYQAINMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAAFNEMKQISLADVIDD 118
>gi|73661807|ref|YP_300588.1| hypothetical protein SSP0498 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72494322|dbj|BAE17643.1| conserved hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 133
Score = 62.6 bits (151), Expect = 2e-08, Method: Composition-based stats.
Identities = 22/134 (16%), Positives = 52/134 (38%), Gaps = 5/134 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + I +L A + P IA++ + + KI + L +++ +G
Sbjct: 1 MNTQFSVSIHILTLLATEKE-PVSSQYIADSINSNATLVRKICRYLRDGHYIQSSQG-IS 58
Query: 63 GVRLCRPADQITILDVVKATE-ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G L A++I + D+ + E+ A+ C + + L + +
Sbjct: 59 GYSLSSSANEIHLGDLYQLIFSETMHFAKIHKDTNQHCHVGKNISHALDEIYSEVDTTII 118
Query: 120 DVLTQYSIECLVRN 133
+ L Y+I+ ++ +
Sbjct: 119 NKLNTYTIQSVIDH 132
>gi|294499976|ref|YP_003563676.1| transcriptional regulator [Bacillus megaterium QM B1551]
gi|294349913|gb|ADE70242.1| transcriptional regulator, putative [Bacillus megaterium QM B1551]
Length = 159
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTD---YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
MH+ + Y I +L + I+ S + K+L+ LV A ++ +V
Sbjct: 1 MHMKTGVEQSVYAILLLTFL--PEKAVLPGDVISTQLGGSPTYFQKLLRKLVSADLLASV 58
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFA--SHKIDCPLVGSCGLTSVLRKAL 115
G +GG RL + ++I I DV A E + ++ C L+ ++ +A
Sbjct: 59 PGSKGGFRLKKTPEEIRIYDVYVAIEGKQSLYSSSGIFHDMLNLKDKDICLLSDLMEEAE 118
Query: 116 NAFFDVLTQYSIECLVRN 133
+++ +L + +I L
Sbjct: 119 SSWQSILKRQTIATLTNE 136
>gi|149178219|ref|ZP_01856813.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797]
gi|148843001|gb|EDL57370.1| hypothetical protein PM8797T_30931 [Planctomyces maris DSM 8797]
Length = 149
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/128 (21%), Positives = 55/128 (42%), Gaps = 3/128 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ Y +R + A Q+++A + +L KI+ L + G++ + RG+ G
Sbjct: 10 ISQTEAYALRAMTCLAFRFPDYMTRDQLSQAAEVPHAYLPKIMLELNRTGLIRSQRGQNG 69
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G L +I++LDV+K+ + F + H+ D L L + L
Sbjct: 70 GYALIPSPQEISLLDVIKSVKAGFQ--RELSQHRPDTSNEVR-QLDEHLNHTFSLLETSL 126
Query: 123 TQYSIECL 130
Q S+ +
Sbjct: 127 EQTSLADI 134
>gi|32266962|ref|NP_860994.1| hypothetical protein HH1463 [Helicobacter hepaticus ATCC 51449]
gi|32263014|gb|AAP78060.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
Length = 161
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 24/160 (15%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-------------YPNRISQIAEACCISELFLFKILQP 47
M + R I + + N+ +A++ ++ + + IL
Sbjct: 1 MQIPSRFSIAIHICLCLEFFNEDSGFNANTDKTHCKKMTSEALADSVGVNSVIIRNILAQ 60
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--------ESFFVAECFASHKIDC 99
L AG++ RG GG L + +I++LD+ A + + + A+ C
Sbjct: 61 LKSAGLINVARG-SGGSVLSKKPQEISLLDIFNAVQSMGGKETNGKNRLFKFHANPNELC 119
Query: 100 PLVGSCGL--TSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
PL + L S KA L++ + L++ ++
Sbjct: 120 PLGKNIHLILDSSFEKAQITLESYLSKVKLSNLLKKLQNL 159
>gi|315642364|ref|ZP_07896981.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
15952]
gi|325571763|ref|ZP_08147144.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
ATCC 12755]
gi|315482303|gb|EFU72855.1| Rrf2 family transcriptional regulator [Enterococcus italicus DSM
15952]
gi|325155659|gb|EGC67860.1| Rrf2 family transcriptional regulator [Enterococcus casseliflavus
ATCC 12755]
Length = 144
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 14/134 (10%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ L+Y HN+ +AE C + + + ++L K G+V+T +G GG
Sbjct: 2 SEFTIAVHGLVYLG-HNNSIFTSEALAENICTNPVRVRRVLAKCRKKGLVQTKKGVHGGY 60
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
L + IT+ +V +A + + + C ++S + +A++ +D L +
Sbjct: 61 FLTDNLEAITLKNVYEAIKIPI-----IQNTWHSGYINEQCMISSGMSEAMDDLYDELNK 115
Query: 125 --------YSIECL 130
+++ +
Sbjct: 116 DAVAKLATITLKDM 129
>gi|87303358|ref|ZP_01086146.1| putative transcriptional regulator [Synechococcus sp. WH 5701]
gi|87282006|gb|EAQ73968.1| putative transcriptional regulator [Synechococcus sp. WH 5701]
Length = 146
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 3/140 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L +R I+ L+ A+ + +A + I E L ++L L +A +VE RGR G
Sbjct: 2 LKRRGLQAIQALLELALEPESWRSGPDLAASLAIPEPMLEQVLLQLRRAKLVEARRGRHG 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G RL R A I +L+V++A E + + L R+ A L
Sbjct: 62 GYRLQRTAAAIPLLEVLQAVEADPSQPPAVTAPSEQAGEQVALALE---RRLQLALEREL 118
Query: 123 TQYSIECLVRNRSSIKKIFN 142
+ ++E L+ + S ++
Sbjct: 119 ARLTLEELLYDLRSTQECLR 138
>gi|330992283|ref|ZP_08316231.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp.
SXCC-1]
gi|329760482|gb|EGG76978.1| HTH-type transcriptional regulator iscR [Gluconacetobacter sp.
SXCC-1]
Length = 149
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 6 RTDYGIRVLMYCAIHN--DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
RT + +++ A + + P +IAE ++ L ILQ L +AG+++ VRG GG
Sbjct: 7 RTAIALVIMLDVAFYGTAERPVSTIEIAERSSLARRGLEPILQGLARAGLLKGVRGPHGG 66
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
RL PA +I + D+ + + + + + + + L + +
Sbjct: 67 YRLALPAREILLSDICR-----IALHDGAHAADRRQGALFNTVIRPFLDQMDGLLAHEYS 121
Query: 124 QYSIECLVRNRSSIKKIFNA 143
+ +++ VR ++ ++ +
Sbjct: 122 KLTLQDFVR-QAEMRGLTRP 140
>gi|317473485|ref|ZP_07932777.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
gi|316898996|gb|EFV21018.1| transcriptional regulator [Anaerostipes sp. 3_2_56FAA]
Length = 148
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 48/136 (35%), Gaps = 14/136 (10%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L++ H ++A C + + KI+ L K G++ T G G
Sbjct: 1 MNSEFTIAVHALVFL-NHKRESVSSDKLAANICTNPARVRKIMGKLKKKGLISTKEGVVG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
G ++T+ DV A + +S C + S + ++ +
Sbjct: 60 GYLFDLDPSKVTLYDVSSALD-----VPFVSSSWRSGGSDLPCLVASGMAGIMDDIYGTL 114
Query: 120 -----DVLTQYSIECL 130
D L Q +I+ +
Sbjct: 115 DQLCKDYLKQVTIQTI 130
>gi|270261370|ref|ZP_06189643.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
gi|270044854|gb|EFA17945.1| transcriptional regulatory protein [Serratia odorifera 4Rx13]
Length = 179
Score = 62.2 bits (150), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL K GI+ + GR G + L RP ++IT
Sbjct: 34 VALAEKQGLRSTSAILAAGLEANPSFIRKLMVPLTKNGIIVSTLGRNGSIHLGRPVEEIT 93
Query: 75 ILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + + + C SV+ +A A VL ++++ +
Sbjct: 94 LRDIYLSVIDDKRIWAARPEGPARCLVSANACWYFKSVVNEAEEASLAVLERHTVADALA 153
Query: 133 N 133
Sbjct: 154 E 154
>gi|325261234|ref|ZP_08127972.1| putative Rrf2 family protein [Clostridium sp. D5]
gi|324032688|gb|EGB93965.1| putative Rrf2 family protein [Clostridium sp. D5]
Length = 139
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 53/136 (38%), Gaps = 14/136 (10%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L+Y H ++A C + + + K++ L K +++T G +G
Sbjct: 1 MTGEFTIAVHALVYL-DHKQETLSSEELAGNICTNPVRVRKVMARLKKHKLLDTKEGLKG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
G ++ +P ++I++ + A E + + C + S + ++ +
Sbjct: 60 GYKIAQPPEKISLKQICDALEMDI-----VKASWHSGNIDMPCLVASGMAGVMDGIYGDL 114
Query: 120 -----DVLTQYSIECL 130
L +I+ +
Sbjct: 115 NKIGKQYLETITIKDI 130
>gi|218515594|ref|ZP_03512434.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
Length = 76
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LTK+ YG++ L+ A + I+ +A I + FL IL L GI+ + +G
Sbjct: 2 LTKKGKYGLKALVDLARLPPGETAFINDVAARNNIPKKFLDTILLELRNVGILRSKKGPG 61
Query: 62 GGVRLCRPADQITIL 76
GG L RPA +I I
Sbjct: 62 GGYSLSRPASEIRIG 76
>gi|332975394|gb|EGK12288.1| Rrf2 family transcriptional regulator [Desmospora sp. 8437]
Length = 86
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 8/78 (10%)
Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
+V++VRG GG +L R ++IT DV++ E E + R
Sbjct: 1 MVKSVRGAYGGYKLSRSPEEITAGDVIRVLEGPISPVEFNEEEDPGR--------RELWR 52
Query: 113 KALNAFFDVLTQYSIECL 130
+ +A +VL ++ L
Sbjct: 53 RIRDAIAEVLDNTTLADL 70
>gi|116669822|ref|YP_830755.1| BadM/Rrf2 family transcriptional regulator [Arthrobacter sp. FB24]
gi|116609931|gb|ABK02655.1| transcriptional regulator, BadM/Rrf2 family [Arthrobacter sp. FB24]
Length = 136
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 6/114 (5%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEE 84
+++AE + +L K LQ LV+AGI+ +V G RGG +L R A+ IT+LDVV A E
Sbjct: 1 MNSARLAELYQLPAAYLNKQLQALVRAGILYSVSGPRGGFQLARGAETITVLDVVLAIEG 60
Query: 85 SFFVAEC------FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
C + SC ++ +R+A A+ L++ +I +
Sbjct: 61 PDPAFRCESILANAPGADPGEDYLRSCLVSQTMRQAELAWRQTLSRQTIAGIAA 114
>gi|313900567|ref|ZP_07834060.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2]
gi|312954629|gb|EFR36304.1| transcriptional regulator, Rrf2 family [Clostridium sp. HGF2]
Length = 138
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/139 (20%), Positives = 62/139 (44%), Gaps = 8/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +++ + + P + S++++ +S+ +L KI++ LVKA IV ++ +
Sbjct: 1 MRIRGSLEQAICIVLLIST-SSRPVKSSELSKKLNVSDSYLKKIMRQLVKAKIVSSIASK 59
Query: 61 RGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
GG L + +IT LD+ A E S + + + + L A
Sbjct: 60 NGGFVLLKTPSRITFLDLFNAIEGQEQFAVSTSLVDRVFDSRKQVKEKEEKIMH-YLHGA 118
Query: 115 LNAFFDVLTQYSIECLVRN 133
+ L + +I+ ++ +
Sbjct: 119 ELEYRKKLKEITIQQILSD 137
>gi|163789536|ref|ZP_02183974.1| Rrf2 family protein [Carnobacterium sp. AT7]
gi|159875068|gb|EDP69134.1| Rrf2 family protein [Carnobacterium sp. AT7]
Length = 156
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/140 (18%), Positives = 59/140 (42%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQI-AEACCISELFLFKILQPLVKAGIVETVR 58
M LTK + + +L + +++ + + S ++ KI++ LV +G+ ++
Sbjct: 1 MKLTKGLEQAVCILAMLSTQDNHILITSHVLNSRLKGTSHSYIRKIIRKLVVSGLATSIP 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEESF-------FVAECFASHKIDCPLVGSCGLTSVL 111
G GG L + ++I +L++V+A E + + F+ T+
Sbjct: 61 GSNGGFMLAKKPEKINLLEIVEALEGKIVTYPNSGMINQVFSDIGEPASNGEKMLTTT-F 119
Query: 112 RKALNAFFDVLTQYSIECLV 131
+A + L Q ++ L+
Sbjct: 120 GEADKRYTSFLEQQTLNQLI 139
>gi|239626598|ref|ZP_04669629.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239516744|gb|EEQ56610.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 144
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ H +AE C + + K++ L KA +V+T G G
Sbjct: 1 MTSEFTIAVHALVFL-NHKAQVYSSEGLAENVCTNAARIRKVMAKLKKADLVKTKEGVDG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAEC-FASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G R + +I++ V +A + F + C + + +
Sbjct: 60 GYLFHRDSREISLSMVAEALDTPFVTVSWKSGDPHMSCMIASGMAGVMDELYGDLDRCCR 119
Query: 120 DVLTQYSIECL 130
+ L+ +I L
Sbjct: 120 ERLSHVTIADL 130
>gi|325660753|ref|ZP_08149381.1| hypothetical protein HMPREF0490_00113 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325472827|gb|EGC76037.1| hypothetical protein HMPREF0490_00113 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 158
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ H ++A+ C + + K++ L +A ++ T G G
Sbjct: 1 MTSEFAIAVHALVFL-EHKGIVISSEELAKNVCTNPARIRKVMAKLKRADLIRTKEGTEG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVA--ECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119
G R A+++T+ V +A + SF + K C + + +
Sbjct: 60 GYLFFREAEEVTLAMVAEALQISFVSTSWRSGSPEKKCCVASGMADVMAGIYGDLNACCK 119
Query: 120 DVLTQYSIECL 130
D+L Q +I +
Sbjct: 120 DLLKQRTIADV 130
>gi|325263527|ref|ZP_08130261.1| transcriptional regulator superfamily [Clostridium sp. D5]
gi|324031236|gb|EGB92517.1| transcriptional regulator superfamily [Clostridium sp. D5]
Length = 137
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 14/136 (10%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ H +AE C + + KI+ L KAG+VET G G
Sbjct: 1 MTSEFTIAVHALVFL-NHKGTVYSSEGLAENICTNAARIRKIMVKLKKAGLVETKEGIEG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL--------TSVLRKA 114
G + +++ + + A E +S C + V
Sbjct: 60 GYLFVKNSEETDLCTIADALE-----FSFVSSGWKSGSSELKCLIASGMAGVMEDVYNDL 114
Query: 115 LNAFFDVLTQYSIECL 130
L + ++ L
Sbjct: 115 DQQCRRRLREITVADL 130
>gi|304407103|ref|ZP_07388757.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
gi|304344090|gb|EFM09930.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus
curdlanolyticus YK9]
Length = 143
Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats.
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
I+ L+ A + ++ IA+ L KIL L +A ++ET GR GG RL RP
Sbjct: 18 AIQALVVLASN-EHTCPSCTIADQLQSEATLLRKILATLARASLIETREGRDGGYRLLRP 76
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCP--LVGSCGLTSVLRKALNAFFDVLTQYSI 127
A+QIT+ +V +A + S + P ++ S++ + + VL +++I
Sbjct: 77 AEQITLAEVYQALQISEELGRSMEEATGSHPFGIMMQGVFASLVAELDESTMKVLEKHTI 136
Query: 128 ECLVRN 133
L+
Sbjct: 137 AELISR 142
>gi|315497061|ref|YP_004085865.1| transcriptional regulator, badm/rrf2 family [Asticcacaulis
excentricus CB 48]
gi|315415073|gb|ADU11714.1| transcriptional regulator, BadM/Rrf2 family [Asticcacaulis
excentricus CB 48]
Length = 139
Score = 61.5 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 59/139 (42%), Gaps = 7/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN----DYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M ++R L Y A + S +A + + + + ++ L KAG+V+T
Sbjct: 1 MSDSQRFPVAAHTLAYLAHKGAYSREQAVSSSVLAASIPTNPVVIRRMTTQLAKAGLVDT 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
G GG L +PA+ I + V+ A + CP+ + ++ ++ A
Sbjct: 61 CSGVSGGTWLLKPAETIPLDQVLHAVHGCAHLGS-APPGADGCPVGQAIPKAVSGAMKAA 119
Query: 115 LNAFFDVLTQYSIECLVRN 133
A + L++ ++ L+RN
Sbjct: 120 NAAATETLSKITVADLIRN 138
>gi|325916311|ref|ZP_08178589.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
vesicatoria ATCC 35937]
gi|325537482|gb|EGD09200.1| transcriptional regulator, BadM/Rrf2 family [Xanthomonas
vesicatoria ATCC 35937]
Length = 150
Score = 61.5 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 3/129 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL++ A + P QIA + + + + + L AG V++ +G GG ++
Sbjct: 2 LHVLLHMA-RSAQPMTSEQIASMLATNAVVVRRTMAGLRSAGYVQSSKGHNGGWQIACDL 60
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
Q+T+LDV +A A C + + + L A L ++
Sbjct: 61 AQVTLLDVHRAVGGPHLFAIGADHPNPQCGVERVVNAAIADALADAEALLLQRLGTVTLA 120
Query: 129 CLVRNRSSI 137
L S+
Sbjct: 121 ALASEFDSL 129
>gi|126731918|ref|ZP_01747722.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37]
gi|126707745|gb|EBA06807.1| hypothetical protein SSE37_02930 [Sagittula stellata E-37]
Length = 115
Score = 61.5 bits (148), Expect = 3e-08, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 2/113 (1%)
Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
D P +IA + + + L L +AG++ + +G GG L RP +I++LD+ A
Sbjct: 2 DRPATSEEIAAMLGTNATVVRRTLAGLREAGLLSSTKGHGGGWSLSRPLTEISLLDLYSA 61
Query: 82 TEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
A + C + L A F + L ++ +VR
Sbjct: 62 LGSPELFAIAPDEAQPACLLARAANAATNDALHAAREVFEERLKALTVAEIVR 114
>gi|331085507|ref|ZP_08334592.1| hypothetical protein HMPREF0987_00895 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330407745|gb|EGG87243.1| hypothetical protein HMPREF0987_00895 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 153
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ H ++A+ C + + K++ L +A ++ T G G
Sbjct: 1 MTSEFAIAVHALVFL-EHKGIVISSEELAKNVCTNPARIRKVMAKLKRADLIRTKEGTEG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVA--ECFASHKIDC-PLVGSCGLTSVLRKALNAFF 119
G R A+++T+ V +A + SF + K C + + +
Sbjct: 60 GYLFFREAEEVTLAMVAEALQISFVSTSWRSGSPEKKCCVASGMADVMAGIYGDLNACCK 119
Query: 120 DVLTQYSIECL 130
D+L Q +I +
Sbjct: 120 DLLKQRTIADV 130
>gi|270290220|ref|ZP_06196445.1| transcriptional regulator [Pediococcus acidilactici 7_4]
gi|270281001|gb|EFA26834.1| transcriptional regulator [Pediococcus acidilactici 7_4]
Length = 143
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/140 (17%), Positives = 54/140 (38%), Gaps = 10/140 (7%)
Query: 1 MHLTKRTDYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M + + +L Y + + I QI++ I L +++ L K+ + +
Sbjct: 1 MAYSFGFSQSLEILFYIKLKTEMEEEKYLTIQQISKKTNIPIPSLKRLVGLLKKSDFLAS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL------TSV 110
+G GG+ L + AD+I + DV A E + + + + + + +
Sbjct: 61 KKGLNGGLALAKSADRIRLYDVFTAIEGTTPLFKQYDNFDVSAFKHKKEVTYMLIESKKI 120
Query: 111 LRKALNAFFDVLTQYSIECL 130
A + D L + ++ L
Sbjct: 121 FENAEQSMLDELKKKTLADL 140
>gi|159897735|ref|YP_001543982.1| BadM/Rrf2 family transcriptional regulator [Herpetosiphon
aurantiacus ATCC 23779]
gi|159890774|gb|ABX03854.1| transcriptional regulator, BadM/Rrf2 family [Herpetosiphon
aurantiacus ATCC 23779]
Length = 139
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 31/136 (22%), Positives = 58/136 (42%), Gaps = 6/136 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP----NRISQIAEACCISELFLFKILQPLVKAGIVET 56
M + I + +Y + +IA+ I++ + K++Q L AG++ET
Sbjct: 1 MSYSLAFSQAIAISLYITYKIEEQIYDFVPTHEIADFLGIAKPSVVKVVQSLTNAGLIET 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLTSVLRKA 114
G +GGVRL R + I +LD+ A E++ + + L + + L++A
Sbjct: 61 REGAKGGVRLTRNSQAINLLDIFNAIEQAKPLFRLNIHPTEPKIEALAARQRMVASLQRA 120
Query: 115 LNAFFDVLTQYSIECL 130
A L ++ L
Sbjct: 121 EAAMKQELQAVTLADL 136
>gi|254524248|ref|ZP_05136303.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp.
SKA14]
gi|219721839|gb|EED40364.1| transcriptional regulator, BadM/Rrf2 family [Stenotrophomonas sp.
SKA14]
Length = 151
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/125 (24%), Positives = 50/125 (40%), Gaps = 7/125 (5%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ V+ + + P Q+A + + ++L L KAG+V + RG GG +L R
Sbjct: 10 ALHVMAHLVGQS-APRTSEQLASCLPTHPVVIRRLLAQLHKAGLVHSARGHGGGSQLARD 68
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY 125
A IT+ D+ A V CP+ + S L R+A L
Sbjct: 69 AATITLHDIYLAVGAPPLVQVGTRGSGGGCPIQQ--LVNSALLEGAREAQRLLEQRLQAA 126
Query: 126 SIECL 130
+++ L
Sbjct: 127 TLDQL 131
>gi|307327145|ref|ZP_07606334.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
gi|306887226|gb|EFN18223.1| transcriptional regulator, BadM/Rrf2 family [Streptomyces
violaceusniger Tu 4113]
Length = 149
Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 5/133 (3%)
Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+++++ A+ + P +++A + + K+L PL + G+V V+GR GG L
Sbjct: 9 ALQLMLLLAVAAEDDGAPLSSAELARMLNTNPSLVRKLLVPLAEEGLVVCVKGRTGGAML 68
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQ 124
RP D+IT+ ++ + + C + C + G ++ +A A D L
Sbjct: 69 GRPTDRITLAEIYRCAVGDKPLWACSPGVEPVCQVTAHAGEYFAALTAEAEEAVLDSLGD 128
Query: 125 YSIECLVRNRSSI 137
++ VR +
Sbjct: 129 RTLADSVRELRRL 141
>gi|309777294|ref|ZP_07672256.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
gi|308914974|gb|EFP60752.1| transcriptional regulator [Erysipelotrichaceae bacterium 3_1_53]
Length = 138
Score = 61.1 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 61/139 (43%), Gaps = 8/139 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + I +++ + + P + S++++ +S+ +L KI++ LVKA IV ++ +
Sbjct: 1 MRIRGSLEQAICIVLLIST-SSRPVKSSELSKKLDVSDSYLKKIMRQLVKANIVSSIASK 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFF------VAECFASHKIDCPLVGSCGLTSVLRKA 114
GG L R QIT LD+ A E + + + + L A
Sbjct: 60 TGGFVLLRSPSQITFLDLFNAIEGEEEFAVSTSLVDKVFDSRKQ-VKEKERQIMHYLYGA 118
Query: 115 LNAFFDVLTQYSIECLVRN 133
+ L + +I+ ++ +
Sbjct: 119 ELEYRKKLKEITIQQILTD 137
>gi|227523176|ref|ZP_03953225.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
hilgardii ATCC 8290]
gi|227089650|gb|EEI24962.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
hilgardii ATCC 8290]
Length = 159
Score = 61.1 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + +L+ A+ D+ P + I+ +S+ +L K+L +V G++ + G
Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
+ GG L +++T+LDV A E +
Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGPSPII 90
>gi|227510984|ref|ZP_03941033.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
buchneri ATCC 11577]
gi|227085726|gb|EEI21038.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus
buchneri ATCC 11577]
Length = 159
Score = 61.1 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + +L+ A+ D+ P + I+ +S+ +L K+L +V G++ + G
Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLKSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
+ GG L +++T+LDV A E +
Sbjct: 61 KGGGFSLSYDINRMTLLDVYDAIEGPSPII 90
>gi|227507946|ref|ZP_03937995.1| transcriptional regulator [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
gi|227192562|gb|EEI72629.1| transcriptional regulator [Lactobacillus brevis subsp.
gravesensis ATCC 27305]
Length = 159
Score = 61.1 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + + +L+ A+ D+ P R I+ +S+ +L K+L +V G++ + G
Sbjct: 1 MKLKSSFEQAVCILLMLALSKDHMPLRSVVISNRLGVSDSYLKKVLHQMVVGGLISSEAG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVA 89
+ GG L +++T+LDV A E +
Sbjct: 61 KGGGFSLSYDINRMTLLDVYNAIEGPSPII 90
>gi|227539595|ref|ZP_03969644.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33300]
gi|227240508|gb|EEI90523.1| Rrf2 family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33300]
Length = 138
Score = 61.1 bits (147), Expect = 4e-08, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ + D IA + ++ + + K ++ L +A +V + G+ GGVR+
Sbjct: 10 ATHIIALLMLERDAWLSSDYIAGSINVNPVVVRKEIRKLKEAQLVISKEGKNGGVRIAED 69
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSI 127
++ T+ DV KAT S + + +CP+ + L+ V L Q SI
Sbjct: 70 INKKTLADVYKATLASDE-KGKYNNPNPNCPVGKNINSYLSIVYNDIEEQHITYLNQISI 128
Query: 128 ECL 130
+ L
Sbjct: 129 QDL 131
>gi|299822833|ref|ZP_07054719.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
gi|299816362|gb|EFI83600.1| Rrf2 family transcriptional regulator [Listeria grayi DSM 20601]
Length = 188
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 60/145 (41%), Gaps = 6/145 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L + I +L+ + P + I+E IS+ +L K+++ LV AG+V + G
Sbjct: 32 MKLKNGIEQTICILIMLETQDKAKPLKSYTISERLGISDSYLKKVMRQLVVAGLVTSEAG 91
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASH-----KIDCPLVGSCGLTSVLRKA 114
+ GG L + A+ T+LD+ +A E D + +V +A
Sbjct: 92 KDGGFILAKKAEDFTMLDIYEAIEGKESFIHSTNLAAKVFLYEDIIEAKESEILNVFFEA 151
Query: 115 LNAFFDVLTQYSIECLVRNRSSIKK 139
F L QY L+ N I K
Sbjct: 152 EELFKIRLGQYKFSQLLMNTEQINK 176
>gi|295097954|emb|CBK87044.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter cloacae
subsp. cloacae NCTC 9394]
Length = 148
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + + +A + F+ K++ PL + GI+ + GR G + L RPA++IT
Sbjct: 5 VAMAEQSGERSTSAILAYGLEANPSFIRKLMVPLARDGIIVSTLGRNGSIHLGRPAEEIT 64
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A VL ++++ +
Sbjct: 65 LRDIYLSVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASLAVLARHTVASALE 124
Query: 133 N 133
Sbjct: 125 E 125
>gi|256004457|ref|ZP_05429437.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
gi|255991598|gb|EEU01700.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
thermocellum DSM 2360]
Length = 65
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M ++ + Y + ++ A +N + I+E IS++FL ++ L KA IV + +
Sbjct: 1 MRISAKGRYALAAVISMAQQYNNGEYITVISISEKLGISKIFLEQVFSSLKKAKIVSSTK 60
Query: 59 GRRGG 63
G +GG
Sbjct: 61 GAQGG 65
>gi|220904116|ref|YP_002479428.1| BadM/Rrf2 family transcriptional regulator [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
gi|219868415|gb|ACL48750.1| transcriptional regulator, BadM/Rrf2 family [Desulfovibrio
desulfuricans subsp. desulfuricans str. ATCC 27774]
Length = 181
Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 7/116 (6%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
P S++A ISE F+ KI++ L GI+++VRG GG L R + IT+ D++ A E
Sbjct: 25 PASASELAACTGISEKFVQKIMRLLQAEGIIKSVRGIAGGHMLARNPEAITLADIICAVE 84
Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
+ + V KA A + L ++ VR + + +
Sbjct: 85 GGITLPGVNSEAPAG------KAALDVWDKAATALRNSLDAVTLCS-VRQNAGLSQ 133
>gi|302387002|ref|YP_003822824.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
gi|302197630|gb|ADL05201.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
Length = 141
Score = 61.1 bits (147), Expect = 6e-08, Method: Composition-based stats.
Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCA--IHND--YPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M + T I +L+Y I + I+E I + KI+ L AGI++
Sbjct: 1 MAYSSATYQAISILIYIHYKIRAELYNYLSNRVISEQLNIPAPTVVKIMGKLKSAGIIDV 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV--LRKA 114
G +GG L +P IT+ DV A E + + +D + ++ L +A
Sbjct: 61 REGMKGGNMLAKPLTDITLFDVFDAMERGNPMFKIHRGFHLDYDIFEGIVEKTINSLEEA 120
Query: 115 LNAFFDVLTQYSIECLV 131
A L + + L+
Sbjct: 121 EKAMITYLKKTRLSDLI 137
>gi|77745399|gb|ABB02600.1| putative transcriptional regulator [Lactobacillus reuteri]
Length = 125
Score = 60.7 bits (146), Expect = 6e-08, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 3/120 (2%)
Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
+ IA S + + +++ L KAG++ TV G + + I++ DV A E
Sbjct: 1 TSNNIASTIETSPVVVRRLMSALNKAGLINTVHGAADPALA-KSPENISLYDVFLAIEGD 59
Query: 86 FFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
+ C + G+ L ++A A L + S++ ++ + + +A
Sbjct: 60 AHLFTIDERTNPQCIVGGNIQETLDGFYQQAETAAKAKLARISLQDVIDTIRVKQALKDA 119
>gi|259502086|ref|ZP_05744988.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
gi|259169899|gb|EEW54394.1| Rrf2 family protein [Lactobacillus antri DSM 16041]
Length = 143
Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 5/139 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRG 59
M + R + +L+Y I N S IAE+ + + +++ +VKAGI+ + +
Sbjct: 1 MKYSHRLSDAVHILVYLEILGS--NSSSAIAESVNSNPSLIRRLIAHMVKAGILERSGQH 58
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
++L RPAD+I++LD+ +A E + PL L + ++ A
Sbjct: 59 GEITIKLTRPADRISLLDIYQAVESHQEFLDVDQEINRLHPLSRCMPEVLGAAYQRVQQA 118
Query: 118 FFDVLTQYSIECLVRNRSS 136
+ Q S+ +V +
Sbjct: 119 AEQEMAQISLAAVVDQARA 137
>gi|225619098|ref|YP_002720324.1| transcriptional regulator [Brachyspira hyodysenteriae WA1]
gi|225213917|gb|ACN82651.1| Transcriptional regulator [Brachyspira hyodysenteriae WA1]
Length = 115
Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/110 (23%), Positives = 49/110 (44%), Gaps = 5/110 (4%)
Query: 25 NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE- 83
S I+++ ++ + + IL L KA I+ TV+ GG+ L R + I +LD+ A E
Sbjct: 1 MTSSLISDSVNVNPVIIRNILIQLQKADII-TVKRGTGGISLNRKIENINLLDIFNAVES 59
Query: 84 -ESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECL 130
++ + + CP+ L L NA L + +++ +
Sbjct: 60 LDNNKLFSFHENPNKKCPVGSRINDILQPKLDDVQNAMEKELKKTTLKDI 109
>gi|213025900|ref|ZP_03340347.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 93
Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 14 LMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
L+Y A + + IS++ E +S + KI+ L +AG V VRG+ GG+RL +PA+
Sbjct: 1 LIYMASLPDGRMTSISEVTEVYDVSRNHMVKIINQLSRAGFVTAVRGKNGGIRLGKPANT 60
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCG 106
I I DVV+ E + C + C + +C
Sbjct: 61 ICIGDVVREL-EPLSLVNCSSEF---CHITPACR 90
>gi|315304491|ref|ZP_07874765.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
gi|313627139|gb|EFR95998.1| Rrf2 family protein [Listeria ivanovii FSL F6-596]
Length = 156
Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTD--YGIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETV 57
M L+K D + I ++Y D P I S ++ KIL+ LV +G++ +V
Sbjct: 1 MKLSKSMDQVFCIMTMLY-TQKADVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSV 59
Query: 58 RGRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVL 111
G GG L + ++I +LD+V+A E + S + G +TS
Sbjct: 60 SGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAF 119
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
R A + + L + LV
Sbjct: 120 RNADKEYANYLYSQKLAVLVEQ 141
>gi|229826985|ref|ZP_04453054.1| hypothetical protein GCWU000182_02369 [Abiotrophia defectiva ATCC
49176]
gi|229788603|gb|EEP24717.1| hypothetical protein GCWU000182_02369 [Abiotrophia defectiva ATCC
49176]
Length = 146
Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 61/149 (40%), Gaps = 28/149 (18%)
Query: 1 MHLTKRT----------DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
MH+T + DY + + +A + + + + ++ L +
Sbjct: 1 MHITSKFTIAAHIIAAIDY---------FKDSEKVTSNFLAGSVGANPVIVRNVMGNLKE 51
Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVGSCGLT 108
AGI+ +G+ G+ L + D+IT DV KA + + + + I+CP+ + +
Sbjct: 52 AGIIAISQGK-SGISLAKELDEITFYDVYKAVDCVDDEGLFHFHENPNINCPVGRN--IH 108
Query: 109 SVLRK----ALNAFFDVLTQYSIECLVRN 133
S + + + + L+ ++ +V +
Sbjct: 109 SAMDEKLQRVQSIMENELSCITMADVVAD 137
>gi|157370170|ref|YP_001478159.1| BadM/Rrf2 family transcriptional regulator [Serratia proteamaculans
568]
gi|157321934|gb|ABV41031.1| transcriptional regulator, BadM/Rrf2 family [Serratia
proteamaculans 568]
Length = 161
Score = 60.3 bits (145), Expect = 7e-08, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL K GI+ + GR G + L RPA+QIT
Sbjct: 16 VAVAEKLGVRSTSAVLAAGLEANPSFIRKLMVPLTKNGIIVSTLGRNGSIHLGRPAEQIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDC--PLVGSCGLTSVLRKALNAFFDVLTQYSIEC 129
+ D+ + E + C SV+ +A A +VL Y++
Sbjct: 76 LRDIYLSVIEDKRIWAARPEGPARCLVSANACWYFKSVVNEAEEASLNVLAGYTVAD 132
>gi|108763227|ref|YP_629895.1| hypothetical protein MXAN_1643 [Myxococcus xanthus DK 1622]
gi|108467107|gb|ABF92292.1| conserved hypothetical protein [Myxococcus xanthus DK 1622]
Length = 151
Score = 60.3 bits (145), Expect = 8e-08, Method: Composition-based stats.
Identities = 26/132 (19%), Positives = 47/132 (35%), Gaps = 3/132 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + VL++ + + + + + + L +AGI+ +V+G
Sbjct: 1 MRRDSRLSVALHVLLHM-EDMGPVVTSEAMGRLLKANPVVVRRTMAGLREAGILTSVKGH 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L R D +T+ DV +A + C + + L L +A
Sbjct: 60 GGGWSLARTLDTVTLGDVYEALGTPGLFSIGPHDESPGCLVEQAVNDALGKALDQAAALL 119
Query: 119 FDVLTQYSIECL 130
L S+ L
Sbjct: 120 MQHLRSTSVADL 131
>gi|223042722|ref|ZP_03612770.1| transcriptional regulator superfamily [Staphylococcus capitis SK14]
gi|222443576|gb|EEE49673.1| transcriptional regulator superfamily [Staphylococcus capitis SK14]
Length = 143
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 18/137 (13%), Positives = 56/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H + ++AE C++ + L +++ L ++ TVRG+
Sbjct: 1 MNL--EFNIAVHVLSFLTKHKNEKFNSKELAELTCLNPVQLRRVVANLSDQQLITTVRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA--- 117
GG + + + + ++ + + + + + S + ++ + +
Sbjct: 59 DGGYKANQYTSTVNLAELYQQFVLARDNNQRVYTGDRNSHCDISKHIAQIMARYRDEEIQ 118
Query: 118 -FFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 119 LILNFYRNKTIQDVLND 135
>gi|268679955|ref|YP_003304386.1| transcriptional regulator, Rrf2 family [Sulfurospirillum
deleyianum DSM 6946]
gi|268617986|gb|ACZ12351.1| transcriptional regulator, Rrf2 family [Sulfurospirillum
deleyianum DSM 6946]
Length = 137
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 3 LTKRTDYGIRVL--MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ + YG+ + ++ A + P +I +I+ I + +L ++L L +AG+V +VRG
Sbjct: 4 LSTKGMYGLSAMYQLFLA-KSSKPLQIKEISTRAEIPQNYLEQLLILLRQAGLVNSVRGA 62
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAE 90
GG L + A+ I I D++ A E + V +
Sbjct: 63 YGGYLLAKAAENILIKDILIALEGNLLVID 92
>gi|325519582|gb|EGC98940.1| BadM/Rrf2 family transcriptional regulator [Burkholderia sp.
TJI49]
Length = 49
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
M LT TDY +RV++Y A+H + I +I++A IS+ L K++Q L
Sbjct: 1 MRLTDYTDYSLRVMLYLAVHGEGLATIQEISDAYGISKNHLMKVVQRL 48
>gi|227515093|ref|ZP_03945142.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
gi|227086541|gb|EEI21853.1| transcriptional regulator [Lactobacillus fermentum ATCC 14931]
Length = 120
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 6/117 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + R I +L + ++ + ++ + IS + + +++ L +AG+V+T +G
Sbjct: 7 MRASTRFSDAIHILCFLKVYEEARITSDLLSSSIGISPVMVRRLMGNLRQAGLVQTTQGT 66
Query: 61 RGGVRLCRPADQITILDVVKATEE---SFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
RL R +IT+ DV A EE + C + G + +L +
Sbjct: 67 AQP-RLARDLQKITLYDVYLAVEESDGPHPLFNVNPDTNPQCKVGGH--IQPILAEV 120
>gi|323489199|ref|ZP_08094431.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus
donghaensis MPA1U2]
gi|323397086|gb|EGA89900.1| transcriptional regulator, BadM/Rrf2 family protein [Planococcus
donghaensis MPA1U2]
Length = 160
Score = 60.3 bits (145), Expect = 9e-08, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 5/128 (3%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
Y + +L I++ S + K+L+ LV AG++ +V G +GG +L +
Sbjct: 12 YAVLLLNML--PEKAVLPGEAISQQLGTSPTYFQKLLRKLVSAGLITSVPGVKGGFKLNK 69
Query: 69 PADQITILDVVKATEESFFV---AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ I + D+ A E + + + C LT ++ +A +A+ + Q
Sbjct: 70 KPEDINVFDIYVAIEGQQSLYSPSGVLSDLLELEEPERCCLLTELMVEAESAWRSRMEQE 129
Query: 126 SIECLVRN 133
+IE L R
Sbjct: 130 TIESLSRK 137
>gi|291617389|ref|YP_003520131.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103]
gi|291152419|gb|ADD77003.1| Hypothetical Protein PANA_1836 [Pantoea ananatis LMG 20103]
Length = 183
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/138 (20%), Positives = 57/138 (41%), Gaps = 8/138 (5%)
Query: 4 TKRTDY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
TK DY +++++ A + + +A + F+ K++ PL + GI+ +
Sbjct: 18 TKMLDYRFPTALQMVLSVAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVST 77
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKAL 115
GR G + L RPA IT+ D+ + + + C + + S+ +A
Sbjct: 78 LGRTGSIHLGRPAADITLRDIYVSVTDDKKLWAARPDVAPRCLVSANLCWYFKSIAEEAE 137
Query: 116 NAFFDVLTQYSIECLVRN 133
A VL + ++ +
Sbjct: 138 QASLAVLAKRTVADALNE 155
>gi|146311547|ref|YP_001176621.1| BadM/Rrf2 family transcriptional regulator [Enterobacter sp. 638]
gi|145318423|gb|ABP60570.1| transcriptional regulator, BadM/Rrf2 family [Enterobacter sp. 638]
Length = 159
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 54/121 (44%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + + +A + F+ K++ PL + GI+ + GR G + L RPAD+IT
Sbjct: 16 VAMAEQSGERSTSTILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A +VL ++++ +
Sbjct: 76 LRDIYISVTEDKKLWASRPDVPARCVVSANACWYFKSIADEAEQASLEVLARHTVASALE 135
Query: 133 N 133
Sbjct: 136 E 136
>gi|224476118|ref|YP_002633724.1| putative transcriptional regulator [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222420725|emb|CAL27539.1| putative transcriptional regulator [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 154
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 21/136 (15%), Positives = 48/136 (35%), Gaps = 7/136 (5%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + + L + H D ++E CI+ + L ++ LV+ VET+RG+ G
Sbjct: 16 INLEFNIAVHFLAFLTKHADERFSSRALSELICINPVQLRRVTSQLVEHQYVETIRGKYG 75
Query: 63 GVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCP----LVGSCGLTSVLRKALNA 117
G + + D+ + + + DC + + + K
Sbjct: 76 GYQANESTATANLGDLFQIFTAHSTQGRLYTGTKESDCEISQKIEDTMKVHHA--KEQAL 133
Query: 118 FFDVLTQYSIECLVRN 133
++I+ ++
Sbjct: 134 LKQYYDDFTIQDILEE 149
>gi|323692303|ref|ZP_08106542.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
WAL-14673]
gi|323503628|gb|EGB19451.1| BadM/Rrf2 family Transcriptional regulator [Clostridium symbiosum
WAL-14673]
Length = 141
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/131 (17%), Positives = 48/131 (36%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ + H +A+ C + + K++ L KA +++T G G
Sbjct: 1 MTSEFTIAVHALVFLS-HKGTYYSSEGLADNVCTNAARIRKVMAKLKKADLIKTKEGADG 59
Query: 63 GVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSC--GLTSVLRKALNAFF 119
G R A ++ + + A + F + DC + +T +
Sbjct: 60 GYFFHREAREVDLQMIADAFDTPFVAASWKSGDPDRDCLVSSGMAGVMTEIYDTLDQECR 119
Query: 120 DVLTQYSIECL 130
L Q +I +
Sbjct: 120 KRLKQITIYDI 130
>gi|241896629|ref|ZP_04783925.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313]
gi|241870110|gb|EER73861.1| transcriptional regulator [Weissella paramesenteroides ATCC 33313]
Length = 154
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 56/138 (40%), Gaps = 9/138 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAI-HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + + +L Y AI H+ + IA + + + KI+ L A ++ET G
Sbjct: 1 MKHSVQFSDAVHLLAYIAIFHDSNRLSSTDIAASIQTNPSNVRKIMCQLRDADLIETTNG 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK----AL 115
+ + I+ D+ ++ + + + + + C + G+ + VL
Sbjct: 61 IPKPCLV-KDPHDISFFDIYQSL-DHAQLFQIDTNTESKCIVGGN--IQDVLSDEYLLLQ 116
Query: 116 NAFFDVLTQYSIECLVRN 133
+ + Q S++ +++
Sbjct: 117 QVVEEKMKQISLDHVLKK 134
>gi|28377275|ref|NP_784167.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|308179493|ref|YP_003923621.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|28270106|emb|CAD63006.1| transcription regulator (putative) [Lactobacillus plantarum WCFS1]
gi|308044984|gb|ADN97527.1| transcription regulator (putative) [Lactobacillus plantarum subsp.
plantarum ST-III]
Length = 161
Score = 59.9 bits (144), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 11/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + ++Y H D ++A++ ++ + + IL L K G + G+
Sbjct: 6 MKLD--FSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTSVL 111
GG +L + + D+ T F P+ + LT +
Sbjct: 64 NGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTDLF 123
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
A + Q+++ L +
Sbjct: 124 TVADRQYRAYYHQFTMADLQAD 145
>gi|296102479|ref|YP_003612625.1| putative transcriptional regulator [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295056938|gb|ADF61676.1| putative transcriptional regulator [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 159
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RP +QIT
Sbjct: 16 VAMAEQLGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRNGSIHLGRPPEQIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A VL +++ +
Sbjct: 76 LRDIYLSVIEDKKLWASRPDVPARCVVSANTCWYFKSIAEEAEQASLAVLAGHTVASALE 135
Query: 133 N 133
Sbjct: 136 E 136
>gi|310644495|ref|YP_003949254.1| transcriptional regulator [Paenibacillus polymyxa SC2]
gi|309249446|gb|ADO59013.1| Transcriptional regulator [Paenibacillus polymyxa SC2]
Length = 165
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ L+Y H IA + + ++L LV+A ++ GR GG L R
Sbjct: 18 ALKALVYLEKH-GELCASGSIARSIDCEVTLVRRVLTRLVQADLIAAREGREGGYVLTRS 76
Query: 70 ADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
AD IT+ D+ A E + + ++ +L ++ +V +++
Sbjct: 77 ADHITLADIYHAIEICDPIFPGMMHEPETNPFCGELAIAVSEILAESERRMLEVWESHTL 136
Query: 128 ECLVRN 133
L +
Sbjct: 137 ASLAKR 142
>gi|317047988|ref|YP_004115636.1| BadM/Rrf2 family transcriptional regulator [Pantoea sp. At-9b]
gi|316949605|gb|ADU69080.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. At-9b]
Length = 161
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 25/121 (20%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RPA +IT
Sbjct: 16 VAMAEQLGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPASEIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A +VL + ++ +
Sbjct: 76 LRDIYTSVIEDKKLWASRPDVAPRCLVSANLCWYFKSIADEAEQASLNVLEKRTVADALA 135
Query: 133 N 133
Sbjct: 136 E 136
>gi|254555491|ref|YP_003061908.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
gi|254044418|gb|ACT61211.1| transcription regulator (putative) [Lactobacillus plantarum JDM1]
Length = 161
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 11/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + ++Y H D ++A++ ++ + + IL L K G + G+
Sbjct: 6 MKLD--FSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGK 63
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTSVL 111
GG +L + + D+ T F P+ + LT +
Sbjct: 64 NGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTDLF 123
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
A + Q+++ L +
Sbjct: 124 TVADRQYRAYYHQFTMADLQAD 145
>gi|226322283|ref|ZP_03797801.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758]
gi|225209313|gb|EEG91667.1| hypothetical protein COPCOM_00043 [Coprococcus comes ATCC 27758]
Length = 152
Score = 59.5 bits (143), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 61/142 (42%), Gaps = 8/142 (5%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ ++ ++A+ C + + + +++ L KAG++ET G G
Sbjct: 1 MTSEFAIAVHALVFL-DRSNATIASEELADNVCTNPVCIRRVMGKLKKAGLIETREGMGG 59
Query: 63 GVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCGLTSVLRKA----LNA 117
G R+ + IT+ + A E + + + C + + V+ + +
Sbjct: 60 GYRIAKVNSDITLRQISDALENTLVKASWRSGNPDKKCLVASGMSV--VMDELVTGMNRS 117
Query: 118 FFDVLTQYSIECLVRNRSSIKK 139
D L + +I+ + +++K+
Sbjct: 118 CNDYLERITIQKVEERLTALKE 139
>gi|300767015|ref|ZP_07076928.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300495553|gb|EFK30708.1| transcription regulator [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 156
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 49/142 (34%), Gaps = 11/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + ++Y H D ++A++ ++ + + IL L K G + G+
Sbjct: 1 MKLD--FSVAVHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTSVL 111
GG +L + + D+ T F P+ + LT +
Sbjct: 59 NGGYQLDLALADMNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTDLF 118
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
A + Q+++ L +
Sbjct: 119 TVADRQYRAYYHQFTMADLQAD 140
>gi|328958341|ref|YP_004375727.1| hypothetical protein CAR_c20540 [Carnobacterium sp. 17-4]
gi|328674665|gb|AEB30711.1| hypothetical protein CAR_c20540 [Carnobacterium sp. 17-4]
Length = 144
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 4/129 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ L+Y HN+ +AE C + + + ++L G+V+T +G GG
Sbjct: 2 SEFTIAVHGLVYLG-HNNSSFTSETLAENICTNPVRVRRVLSKCRIKGLVQTKKGVHGGY 60
Query: 65 RLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDV 121
L + IT+ DV +A + C + + + +
Sbjct: 61 FLTDNLEAITLKDVYEAIQIPIIQNTWHSGDVNEQCMISSGMSEAMDDLYVELNKDAVAK 120
Query: 122 LTQYSIECL 130
L +++ +
Sbjct: 121 LATITLKDM 129
>gi|313899650|ref|ZP_07833153.1| transcriptional regulator [Clostridium sp. HGF2]
gi|312955265|gb|EFR36930.1| transcriptional regulator [Clostridium sp. HGF2]
Length = 145
Score = 59.5 bits (143), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 51/132 (38%), Gaps = 14/132 (10%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L Y H + ++A++ C + + K++ L KAG++ET G GG L
Sbjct: 8 ALHALAYL-RHRNTKVSSEELAKSICTNPARIRKVMAKLKKAGLLETREGNSGGYELHGD 66
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL--------RKALNAFFDV 121
A I + D+ +A ++ S L C + + +
Sbjct: 67 AAAIRLSDLAQALQQPL-----TKSGWRSGTLNTYCMIATGMGTVVDTLEASLNEVCMQS 121
Query: 122 LTQYSIECLVRN 133
L+Q +IE + +
Sbjct: 122 LSQITIEDISQQ 133
>gi|254446472|ref|ZP_05059948.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
DG1235]
gi|198260780|gb|EDY85088.1| Transcriptional regulator superfamily [Verrucomicrobiae bacterium
DG1235]
Length = 149
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 48/127 (37%), Gaps = 4/127 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDY---PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
K +Y I L Y A + + IA A +S + K++ + AG+V G
Sbjct: 6 KMANYAIASLSYLAANYEKEGFKANSQTIATARNLSRPLVGKLMSQMSTAGLVNGTPGPG 65
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG L R IT+L++V+ E+ C C C L +
Sbjct: 66 GGFFLSRAPKDITLLEIVRLFEKVEEALMCPFGPG-WCGNGDPCPFHYELEDKRDEMMTW 124
Query: 122 LTQYSIE 128
L + ++E
Sbjct: 125 LAETNLE 131
>gi|167648721|ref|YP_001686384.1| BadM/Rrf2 family transcriptional regulator [Caulobacter sp. K31]
gi|167351151|gb|ABZ73886.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter sp. K31]
Length = 145
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 3/121 (2%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
CA D +++A + + + + ++ L KAG++ G GG L +P + IT+
Sbjct: 21 CAFSADRAVASAELAASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPPEAITLD 80
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNR 134
V++A + CP+ + + A A D L+Q S+ L+
Sbjct: 81 LVLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRGAMIAADTAVADRLSQISVADLLNGA 139
Query: 135 S 135
Sbjct: 140 K 140
>gi|323219527|gb|EGA04012.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Montevideo str. MB102109-0047]
Length = 63
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
E + C + C + +C L L KA+ +F L Y++ LV + K+
Sbjct: 6 EPLSLVNCSSEF---CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 60
>gi|289435629|ref|YP_003465501.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|289171873|emb|CBH28419.1| Rrf2 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954]
gi|313632170|gb|EFR99244.1| Rrf2 family protein [Listeria seeligeri FSL N1-067]
gi|313636561|gb|EFS02277.1| Rrf2 family protein [Listeria seeligeri FSL S4-171]
Length = 156
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 10/142 (7%)
Query: 1 MHLTKRTD--YGIRVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETV 57
M L+K D + I ++Y D P I S ++ KIL+ LV +G++ +V
Sbjct: 1 MKLSKSMDQVFCIMTMLY-TQKADVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSV 59
Query: 58 RGRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVL 111
G GG L + ++I +LD+V+A E + S + G +TS
Sbjct: 60 SGNNGGFTLAKNPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAF 119
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
R A + + L + LV
Sbjct: 120 RNADKEYANYLYSQKLSVLVEQ 141
>gi|322835180|ref|YP_004215206.1| BadM/Rrf2 family transcriptional regulator [Rahnella sp. Y9602]
gi|321170381|gb|ADW76079.1| transcriptional regulator, BadM/Rrf2 family [Rahnella sp. Y9602]
Length = 161
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 10 GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
++++ A + +A + F+ K++ PL + GI+ + GR G + L
Sbjct: 9 AMQMVFCIAQSQKAGQRCTSAILATGLEANSSFIRKLMVPLTQHGIIVSTLGRTGSITLG 68
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL--TSVLRKALNAFFDVLTQY 125
RPA++IT+ D+ A E + C + + +++ +A A F VL ++
Sbjct: 69 RPAEEITLRDIYCAVIEDKRLWAARPDVPARCVVSANACTYFKNIVSEAEEASFQVLARH 128
Query: 126 SIECLVRN 133
++ +
Sbjct: 129 TVADALAE 136
>gi|322436026|ref|YP_004218238.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
MP5ACTX9]
gi|321163753|gb|ADW69458.1| transcriptional regulator, BadM/Rrf2 family [Acidobacterium sp.
MP5ACTX9]
Length = 124
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/118 (27%), Positives = 50/118 (42%), Gaps = 13/118 (11%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+RVL A D + + IAEA S + + +I L KAG +E +G GG RL A
Sbjct: 11 VRVLGVLAAEPDAMHTSAAIAEAIGSSPVMVRRIFSALHKAGFIEQKKGPAGGARLKHSA 70
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
I + D+ A E + + G L + ++K A + + + SI
Sbjct: 71 KSIGLGDLFVAIEPDWLM-------------SGEKALDAAMKKVRTAAVEAMNETSIA 115
>gi|300716621|ref|YP_003741424.1| transcription regulator, Rrf2 family [Erwinia billingiae Eb661]
gi|299062457|emb|CAX59574.1| Transcription regulator, Rrf2 family [Erwinia billingiae Eb661]
Length = 160
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 4/128 (3%)
Query: 10 GIRVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+++++ A + +A + F+ K++ PL + GI+ + GR G +RL
Sbjct: 9 ALQMVLCVAQAEREGKRSTSKILAMGLEANPSFVRKMMVPLTRDGIIVSTLGRAGTIRLG 68
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQY 125
RPAD+IT+ D+ + E + C + + + R+A A DVL +
Sbjct: 69 RPADEITLCDIYTSVLEDKPLLAGRPEVPARCLVSANTCWFFKELAREAEQASLDVLAKR 128
Query: 126 SIECLVRN 133
++ +R
Sbjct: 129 TVADALRE 136
>gi|330820621|ref|YP_004349483.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
BSR3]
gi|327372616|gb|AEA63971.1| BadM/Rrf2 family transcriptional regulator [Burkholderia gladioli
BSR3]
Length = 148
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L++ + L++ + P IA C + + + ++L L AG V++ +G
Sbjct: 6 RLSRM----LHALIHM-NRAEGPLTSEAIAAMLCTNAVVVRRLLGGLRDAGYVQSEKGHG 60
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
GG L D IT+LDV +A E +E + C
Sbjct: 61 GGWTLAVSLDAITLLDVYRAVGEPPLFSELVSEDDPQC 98
>gi|158422332|ref|YP_001523624.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
571]
gi|158329221|dbj|BAF86706.1| putative transcriptional regulator [Azorhizobium caulinodans ORS
571]
Length = 146
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 6/115 (5%)
Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
P +A + L +LQ LV AG+++ VRG RGG L R ++++ ++V+
Sbjct: 24 GTPVAAKSLAARHGLPPRRLEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRV 83
Query: 82 TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
E + E + + + + A F L ++E L R
Sbjct: 84 VEGAEEEKEIILPP------LVTEVVQPAVAAAEQTFDTALDTVTLEDLCRAADQ 132
>gi|164688267|ref|ZP_02212295.1| hypothetical protein CLOBAR_01912 [Clostridium bartlettii DSM
16795]
gi|164602680|gb|EDQ96145.1| hypothetical protein CLOBAR_01912 [Clostridium bartlettii DSM
16795]
Length = 139
Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/139 (20%), Positives = 63/139 (45%), Gaps = 5/139 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M +++R ++ +++ A+++D I++ + + + IL L K + T
Sbjct: 1 MKVSRRFQLTVQTVLFIAVYSDKKEMTCENISKEMKCNPVVIKNILNILYKNNFL-TKGS 59
Query: 60 RRGGVRLCRPADQITILDVVKATEE-SFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
+RL R IT+ D+ K T+E C +I P+V L+ + +N
Sbjct: 60 SISNIRLKRNIKDITLWDIYKITDEVDINNIFCSDDLQIASPIVSDLPELLSPAFGEIMN 119
Query: 117 AFFDVLTQYSIECLVRNRS 135
+ D+L+ S++ L++ +
Sbjct: 120 SIKDILSTVSVDSLLKKYN 138
>gi|312868812|ref|ZP_07729001.1| transcriptional regulator [Lactobacillus oris PB013-T2-3]
gi|311095655|gb|EFQ53910.1| transcriptional regulator [Lactobacillus oris PB013-T2-3]
Length = 143
Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/143 (23%), Positives = 61/143 (42%), Gaps = 6/143 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE-TVRG 59
M + R + +L+Y I N S IA+ + + +++ +VKAGI++ +
Sbjct: 1 MKYSHRLSDAVHILVYLEILGS--NSSSAIADNVNSNPSLIRRLVASMVKAGILQRSGHH 58
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
++L RPA Q+++LD+ +A E + PL LT+ + A
Sbjct: 59 GEITIKLTRPAAQVSLLDIYQAVESHQEFLDVDQEINHHHPLSRCMPEVLTAEYERVQQA 118
Query: 118 FFDVLTQYSIECLVRN-RSSIKK 139
+ Q + +V R+ IK
Sbjct: 119 AEQEMAQIKLATIVDKVRTKIKD 141
>gi|303327292|ref|ZP_07357734.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
3_1_syn3]
gi|302863280|gb|EFL86212.1| putative transcriptional regulator, Rrf2 protein [Desulfovibrio sp.
3_1_syn3]
Length = 181
Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 29/123 (23%), Positives = 56/123 (45%), Gaps = 7/123 (5%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
D P S++A ISE F+ KI++ L GIV+++RG GG L R D +++ D++
Sbjct: 22 EDMPASASELAVCTGISEKFVQKIMRLLQSGGIVKSIRGIAGGHVLARNPDDVSLADIIA 81
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN-RSSIKK 139
A E + + C V A + + L ++ + ++ +S++
Sbjct: 82 AVEGGITLPGV--NSAAPCGRVAL----DAWADAARSLQNSLGSVTLGSVRQSCGASLRA 135
Query: 140 IFN 142
+ +
Sbjct: 136 VLS 138
>gi|238896072|ref|YP_002920808.1| putative transcriptional regulator [Klebsiella pneumoniae
NTUH-K2044]
gi|238548390|dbj|BAH64741.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 173
Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 66/148 (44%), Gaps = 14/148 (9%)
Query: 4 TKRTDY----GIRVLM--YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
T DY +++++ A + + +A + F+ K++ PL + GI+ +
Sbjct: 13 TAMLDYRFPTALQMVLSVAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVST 72
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKAL 115
GR G + L RPAD+IT+ D+ + E + C + + SV +A
Sbjct: 73 LGRNGSIHLGRPADKITLRDIYLSVIEDKKLWASRPDVPARCVVSANACWYFKSVADEAE 132
Query: 116 NAFFDVLTQYSIECLVRNRSSIKKIFNA 143
A +VL ++++ S+++ + NA
Sbjct: 133 QASLNVLARHTVA------SALEAVKNA 154
>gi|304397746|ref|ZP_07379623.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
gi|304354918|gb|EFM19288.1| transcriptional regulator, BadM/Rrf2 family [Pantoea sp. aB]
Length = 164
Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RPA +IT
Sbjct: 16 VAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A DVL + ++ +
Sbjct: 76 LRDIYVSVIEDKKIWAARPDVAPRCLVSANLCWYFKSIADEAEQASLDVLAKRTVADALN 135
Query: 133 N 133
Sbjct: 136 E 136
>gi|332297044|ref|YP_004438966.1| transcriptional regulator, BadM/Rrf2 family [Treponema
brennaborense DSM 12168]
gi|332180147|gb|AEE15835.1| transcriptional regulator, BadM/Rrf2 family [Treponema
brennaborense DSM 12168]
Length = 140
Score = 58.8 bits (141), Expect = 2e-07, Method: Composition-based stats.
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L+Y + H + +AE C + + + K+L L A +VET G G
Sbjct: 1 MTSDFCIAVHALVYLS-HKNGVLSSDALAENICTNPVRIRKVLSKLAGAALVETKEGADG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASH-KIDCPLVGSC--GLTSVLRKALNAFF 119
G R A +T+ DV F V + C + + +++
Sbjct: 60 GYRFTGDAAHVTLADVAGILNVDFTVMNWRSGSIDKPCLISSGMAAAMDTIMADLNACCL 119
Query: 120 DVLTQYSIECL 130
+ L + ++ +
Sbjct: 120 ERLRRITVADI 130
>gi|229043707|ref|ZP_04191411.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
gi|228725635|gb|EEL76888.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus AH676]
Length = 114
Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 5/105 (4%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFF 87
+AE+ + + + KI+ L +AG V RG GG L + +IT+LDV A E
Sbjct: 1 MAESVNTNPVVIRKIMSYLKQAGFVYVNRGP-GGAGLLKDLHEITLLDVYHAVNVVEEDK 59
Query: 88 VAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECL 130
+ DCP+ + L +L +A +A +VL ++ L
Sbjct: 60 LFHIHEQPNPDCPIGANIQAVLEIILIQAQSAMEEVLRNITMGQL 104
>gi|16801523|ref|NP_471791.1| hypothetical protein lin2461 [Listeria innocua Clip11262]
gi|16804399|ref|NP_465884.1| hypothetical protein lmo2361 [Listeria monocytogenes EGD-e]
gi|46908531|ref|YP_014920.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47092459|ref|ZP_00230249.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
gi|47097339|ref|ZP_00234894.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
gi|217963540|ref|YP_002349218.1| Rrf2 family protein [Listeria monocytogenes HCC23]
gi|224499040|ref|ZP_03667389.1| Rrf2 family protein [Listeria monocytogenes Finland 1988]
gi|224503509|ref|ZP_03671816.1| Rrf2 family protein [Listeria monocytogenes FSL R2-561]
gi|226224912|ref|YP_002759019.1| hypothetical protein Lm4b_02331 [Listeria monocytogenes Clip81459]
gi|254825058|ref|ZP_05230059.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
gi|254826814|ref|ZP_05231501.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
gi|254831214|ref|ZP_05235869.1| hypothetical protein Lmon1_07647 [Listeria monocytogenes 10403S]
gi|254854313|ref|ZP_05243661.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
gi|254901113|ref|ZP_05261037.1| hypothetical protein LmonJ_14903 [Listeria monocytogenes J0161]
gi|254914037|ref|ZP_05264049.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|254933311|ref|ZP_05266670.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
gi|254938352|ref|ZP_05270049.1| Rrf2 family protein [Listeria monocytogenes F6900]
gi|254992735|ref|ZP_05274925.1| hypothetical protein LmonocytoFSL_06501 [Listeria monocytogenes FSL
J2-064]
gi|255017809|ref|ZP_05289935.1| hypothetical protein LmonF_08865 [Listeria monocytogenes FSL
F2-515]
gi|255027001|ref|ZP_05298987.1| hypothetical protein LmonocytFSL_12903 [Listeria monocytogenes FSL
J2-003]
gi|255521538|ref|ZP_05388775.1| hypothetical protein LmonocFSL_10010 [Listeria monocytogenes FSL
J1-175]
gi|290893648|ref|ZP_06556630.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
gi|300763892|ref|ZP_07073888.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
gi|16411849|emb|CAD00439.1| lmo2361 [Listeria monocytogenes EGD-e]
gi|16414983|emb|CAC97688.1| lin2461 [Listeria innocua Clip11262]
gi|46881803|gb|AAT05097.1| Rrf2 family protein [Listeria monocytogenes serotype 4b str. F2365]
gi|47014290|gb|EAL05268.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
gi|47019236|gb|EAL09979.1| Rrf2 family protein [Listeria monocytogenes str. 4b H7858]
gi|217332810|gb|ACK38604.1| Rrf2 family protein [Listeria monocytogenes HCC23]
gi|225877374|emb|CAS06088.1| unnamed protein product [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|258599191|gb|EEW12516.1| Rrf2 family protein [Listeria monocytogenes FSL N3-165]
gi|258607706|gb|EEW20314.1| Rrf2 family protein [Listeria monocytogenes FSL R2-503]
gi|258610965|gb|EEW23573.1| Rrf2 family protein [Listeria monocytogenes F6900]
gi|290556850|gb|EFD90382.1| Rrf2 family protein [Listeria monocytogenes FSL J2-071]
gi|293584871|gb|EFF96903.1| Rrf2 family protein [Listeria monocytogenes HPB2262]
gi|293592056|gb|EFG00391.1| conserved hypothetical protein [Listeria monocytogenes J2818]
gi|293594300|gb|EFG02061.1| Rrf2 family protein [Listeria monocytogenes FSL J1-194]
gi|300515233|gb|EFK42284.1| Rrf2 family protein [Listeria monocytogenes FSL N1-017]
gi|307571883|emb|CAR85062.1| HTH rrf2-type DNA-binding domain protein [Listeria monocytogenes
L99]
gi|313607154|gb|EFR83645.1| Rrf2 family protein [Listeria monocytogenes FSL F2-208]
gi|313617478|gb|EFR89842.1| Rrf2 family protein [Listeria innocua FSL S4-378]
gi|313622624|gb|EFR93003.1| Rrf2 family protein [Listeria innocua FSL J1-023]
gi|328465394|gb|EGF36641.1| hypothetical protein LM1816_13597 [Listeria monocytogenes 1816]
gi|328471579|gb|EGF42459.1| hypothetical protein LM220_03882 [Listeria monocytogenes 220]
Length = 156
Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
M L+K D ++ D P I S ++ KIL+ LV +G++ +V
Sbjct: 1 MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLR 112
G GG L + ++I +LD+V+A E + S + G +TS R
Sbjct: 61 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + + L + LV
Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141
>gi|150398750|ref|YP_001329217.1| BadM/Rrf2 family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150030265|gb|ABR62382.1| transcriptional regulator, BadM/Rrf2 family [Sinorhizobium medicae
WSM419]
Length = 152
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 52/142 (36%), Gaps = 4/142 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M R + L++ A ++A + + + + + L +AG+V + +G
Sbjct: 1 MKRDSRLSITLHALLHMAER--KTITSEELAACLSTNPVVVRRTMAGLREAGLVRSEKGH 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAF 118
GG L +++ DV A E F A + C + + + LR+A
Sbjct: 59 GGGWSLACDLATVSLADVHAALGEPAFFAIGNRTESPGCLVEQAVNAAMDGALREAELLL 118
Query: 119 FDVLTQYSIECLVRNRSSIKKI 140
L S+ L R+ +
Sbjct: 119 LQRLGTISLADLSRDFQQRMAL 140
>gi|282915920|ref|ZP_06323685.1| hypothetical protein SATG_02017 [Staphylococcus aureus subsp.
aureus D139]
gi|282320216|gb|EFB50561.1| hypothetical protein SATG_02017 [Staphylococcus aureus subsp.
aureus D139]
Length = 146
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + + VL + H+ S +AE C++ + L ++ LV ++ T+RG+
Sbjct: 1 MNL--KFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 IIINFYKEKTIKDVIED 135
>gi|329891097|ref|ZP_08269440.1| transcriptional regulator family protein [Brevundimonas diminuta
ATCC 11568]
gi|328846398|gb|EGF95962.1| transcriptional regulator family protein [Brevundimonas diminuta
ATCC 11568]
Length = 407
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 11 IRVLMYCAIHN---DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ L++ A H P +A + + + + + L + G+V + +G GG RL
Sbjct: 11 LHALLHMAEHEQRCGRPMTSDMLATCLSTNPVVVRRTMAGLREQGLVVSEKGHGGGWRLA 70
Query: 68 RPADQITILDVVKATEESFFV 88
RP + +T+ V A E +
Sbjct: 71 RPLEAVTLGQVHAALGEPGLL 91
>gi|86605908|ref|YP_474671.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab]
gi|86554450|gb|ABC99408.1| rrf2 family protein [Synechococcus sp. JA-3-3Ab]
Length = 146
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/113 (25%), Positives = 52/113 (46%), Gaps = 2/113 (1%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
H+ +I +IA I + +L ++L L + G+V + RG +GG L RP QI++LD++
Sbjct: 22 HDGRVLQIKEIAAHQSIPDRYLEQLLATLRRQGLVRSQRGAKGGYSLARPPWQISLLDII 81
Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+A E + D L + A A +L + +++ L
Sbjct: 82 QAIEGE-DLTRPRDLPSGDLSPERQ-VLWQAWQDAQAAAVGILQKTTLQDLCD 132
>gi|292488270|ref|YP_003531152.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
CFBP1430]
gi|292899465|ref|YP_003538834.1| transcriptional regulator [Erwinia amylovora ATCC 49946]
gi|291199313|emb|CBJ46430.1| putative transcriptional regulator [Erwinia amylovora ATCC 49946]
gi|291553699|emb|CBA20744.1| HTH-type transcriptional regulator iscR [Erwinia amylovora
CFBP1430]
gi|312172409|emb|CBX80666.1| HTH-type transcriptional regulator iscR [Erwinia amylovora ATCC
BAA-2158]
Length = 152
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 10 GIRVLMYCAI-HNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+++++ A H++ +A+ + F+ K++ PL + GI+ + GR G +RL
Sbjct: 9 AMQMVLCIARAHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLG 68
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQY 125
RPA IT+ D+ + E + + C + + + ++A A DVL +
Sbjct: 69 RPAQLITLCDIYLSVIEDKPLMAGRPEVEPCCIVSANACWYFKQLAKEAEQASLDVLAKR 128
Query: 126 SIECLVRN 133
++ + +
Sbjct: 129 TVADALHD 136
>gi|284802803|ref|YP_003414668.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578]
gi|284995945|ref|YP_003417713.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923]
gi|315283437|ref|ZP_07871629.1| Rrf2 family protein [Listeria marthii FSL S4-120]
gi|284058365|gb|ADB69306.1| hypothetical protein LM5578_2560 [Listeria monocytogenes 08-5578]
gi|284061412|gb|ADB72351.1| hypothetical protein LM5923_2510 [Listeria monocytogenes 08-5923]
gi|313612915|gb|EFR86865.1| Rrf2 family protein [Listeria marthii FSL S4-120]
Length = 157
Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
M L+K D ++ D P I S ++ KIL+ LV +G++ +V
Sbjct: 2 MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVS 61
Query: 59 GRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLR 112
G GG L + ++I +LD+V+A E + S + G +TS R
Sbjct: 62 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 121
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + + L + LV
Sbjct: 122 NADKEYANYLYSQKLSVLVEQ 142
>gi|240140866|ref|YP_002965346.1| putative transcriptional regulator, BadM/Rrf2 family
[Methylobacterium extorquens AM1]
gi|240010843|gb|ACS42069.1| putative transcriptional regulator, BadM/Rrf2 family
[Methylobacterium extorquens AM1]
Length = 142
Score = 58.4 bits (140), Expect = 4e-07, Method: Composition-based stats.
Identities = 21/123 (17%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+L++ A + P +A + + + +I+ L G V + +G GG ++
Sbjct: 1 MLLHMA-EIEGPVTSEFLAGVMQTNPVVVRRIMAGLRDRGYVRSEKGHGGGWQIACDFGA 59
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECL 130
+T+ D+ A A S C + + + R+A L + ++ L
Sbjct: 60 VTLRDIYDALGAPEIFAMGNRSEAPGCLVEQAVNAAMDESFREAEALLMAQLGRITLAAL 119
Query: 131 VRN 133
+
Sbjct: 120 SAD 122
>gi|308186770|ref|YP_003930901.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
gi|308057280|gb|ADO09452.1| HTH-type transcriptional regulator iscR [Pantoea vagans C9-1]
Length = 164
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 2/121 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RPA IT
Sbjct: 16 VAMAEQMGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAADIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A DVL + ++ +
Sbjct: 76 LRDIYVSVIEDKKIWAARPDVAPRCLVSANLCWYFKSIADEAEQASLDVLAKRTVADALN 135
Query: 133 N 133
Sbjct: 136 E 136
>gi|257790392|ref|YP_003180998.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
gi|257474289|gb|ACV54609.1| transcriptional regulator, BadM/Rrf2 family [Eggerthella lenta DSM
2243]
Length = 154
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+Y H +A+ C + + K++ PL +AG V T G GG R
Sbjct: 8 AVHALVYL-NHKADIVSSEALAKNICTNAARVRKVMAPLKRAGFVTTREGNVGGYRFAGD 66
Query: 70 ADQITILDVVKATEESF-FVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYS 126
A + + V A F + C + + + + L Q S
Sbjct: 67 ASAVDLHMVADALNIRFVQSGWHSGDMDMKCLVASGMAGVMDDIFLDLDERCRERLAQIS 126
Query: 127 IECL 130
I +
Sbjct: 127 IADI 130
>gi|291532973|emb|CBL06086.1| hypothetical protein MHY_11290 [Megamonas hypermegale ART12/1]
Length = 62
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 10/62 (16%), Positives = 24/62 (38%)
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
+++ E S C +C C + K +A +V+ ++ L+ + +
Sbjct: 1 MILRLIEGSLAPVACLDDDINNCTRADRCPTLILWEKLYDAISEVVDNITLADLISWQKN 60
Query: 137 IK 138
+K
Sbjct: 61 MK 62
>gi|152971498|ref|YP_001336607.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|169303064|ref|YP_001693239.1| transcriptional regulator [Escherichia coli]
gi|262043875|ref|ZP_06016963.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|330013154|ref|ZP_08307575.1| transcriptional regulator [Klebsiella sp. MS 92-3]
gi|150956347|gb|ABR78377.1| putative transcriptional regulator [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|167614014|gb|ABZ89637.1| transcriptional regulator [Escherichia coli]
gi|259038729|gb|EEW39912.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|328533580|gb|EGF60298.1| transcriptional regulator [Klebsiella sp. MS 92-3]
Length = 159
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RPAD+IT
Sbjct: 16 VAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + SV +A A +VL ++++
Sbjct: 76 LRDIYLSVIEDKKLWASRPDVPARCVVSANACWYFKSVADEAEQASLNVLARHTVA---- 131
Query: 133 NRSSIKKIFNA 143
S+++ + NA
Sbjct: 132 --SALEAVKNA 140
>gi|283478404|emb|CAY74320.1| HTH-type transcriptional regulator iscR [Erwinia pyrifoliae DSM
12163]
gi|310767659|gb|ADP12609.1| HTH-type transcriptional regulator iscR [Erwinia sp. Ejp617]
Length = 152
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 27/128 (21%), Positives = 59/128 (46%), Gaps = 4/128 (3%)
Query: 10 GIRVLMYCAI-HNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+++++ A H++ +A+ + F+ K++ PL + GI+ + GR G +RL
Sbjct: 9 AMQMVLCIARAHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLG 68
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQY 125
RPA IT+ D+ + E + + C + + + ++A A DVL +
Sbjct: 69 RPAHLITLCDIYLSVIEDKPLMAGRPEAEPCCIVSANACWYFKQLAKEAEQASLDVLAKR 128
Query: 126 SIECLVRN 133
++ + +
Sbjct: 129 TVADALHD 136
>gi|323487467|ref|ZP_08092762.1| hypothetical protein HMPREF9474_04513 [Clostridium symbiosum
WAL-14163]
gi|323399236|gb|EGA91639.1| hypothetical protein HMPREF9474_04513 [Clostridium symbiosum
WAL-14163]
Length = 141
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 14/136 (10%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + L++ + H +A+ C + + K++ L KA +++T G G
Sbjct: 1 MTSEFTIAVHALVFLS-HKGTYYSSEGLADNVCTNAARIRKVMAKLKKADLIKTKEGADG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G R A ++ + + A + F A + C ++S + + +D L
Sbjct: 60 GYFFHREAREVDLQMIADALDTPFVAASWKSGDPD-----RDCLVSSGMAGVMTEIYDTL 114
Query: 123 TQ--------YSIECL 130
Q +I +
Sbjct: 115 DQECRKRLKLITIYDI 130
>gi|317488806|ref|ZP_07947339.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|325833719|ref|ZP_08166134.1| transcriptional regulator [Eggerthella sp. HGA1]
gi|316912111|gb|EFV33687.1| transcriptional regulator [Eggerthella sp. 1_3_56FAA]
gi|325485259|gb|EGC87729.1| transcriptional regulator [Eggerthella sp. HGA1]
Length = 154
Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats.
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 4/124 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+Y H +A+ C + + K++ PL +AG V T G GG R
Sbjct: 8 AVHALVYL-NHKADIVSSEALAKNICTNAARVRKVMAPLKRAGFVTTREGNVGGYRFAGD 66
Query: 70 ADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYS 126
A + + V A F + C + + + + L Q S
Sbjct: 67 ASAVDLHMVADALNIRFVQSGWHSGDMDMKCLVASGMAGIMDDIFLDLDERCRERLAQIS 126
Query: 127 IECL 130
I +
Sbjct: 127 IADI 130
>gi|308071262|ref|YP_003872867.1| transcriptional regulator [Paenibacillus polymyxa E681]
gi|305860541|gb|ADM72329.1| Predicted transcriptional regulator [Paenibacillus polymyxa E681]
Length = 157
Score = 58.0 bits (139), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/126 (19%), Positives = 48/126 (38%), Gaps = 3/126 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++ L+Y H IA + + ++L LV+A ++ GR GG L R
Sbjct: 18 AVKALVYLEKH-GELCASGSIARSIDCEVTLVRRVLTRLVQADLIAAREGREGGYVLTRS 76
Query: 70 ADQITILDVVKATEESFFVAEC--FASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
AD IT+ D+ A E + + ++ +L ++ +V +++
Sbjct: 77 ADHITLADIYHAIEICDPIFPGMMHEPETNPFCEELAIAVSEILAESERRMLEVWGSHTL 136
Query: 128 ECLVRN 133
L
Sbjct: 137 ASLANR 142
>gi|251798939|ref|YP_003013670.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Paenibacillus sp. JDR-2]
gi|247546565|gb|ACT03584.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
JDR-2]
Length = 166
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 3/131 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ L+ + + +++A L ++L L + ++ET GR GG RL R
Sbjct: 32 LQALVVLSRKPNA-CTSAELAGHMKSEATMLRRVLAKLAREQLLETREGRDGGYRLKRAP 90
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYSIE 128
+ IT+ DV A + + + + +VL Q +I
Sbjct: 91 ETITLADVYLALRVGEPLCSGMLDTTGIHDFGQEMRVAFMEITDEVERRTLEVLRQVTIA 150
Query: 129 CLVRNRSSIKK 139
L ++K+
Sbjct: 151 QLSERICTLKR 161
>gi|27467284|ref|NP_763921.1| hypothetical protein SE0366 [Staphylococcus epidermidis ATCC 12228]
gi|27314827|gb|AAO03963.1|AE016745_62 conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228]
gi|329723148|gb|EGG59680.1| transcriptional regulator [Staphylococcus epidermidis VCU144]
gi|329734079|gb|EGG70398.1| transcriptional regulator [Staphylococcus epidermidis VCU028]
Length = 140
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 53/137 (38%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + A H+ ++A+ C++ + L ++L L + ++ RG+
Sbjct: 1 MNL--EFNIAVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG + + Q+ + + + +++ C + ++ +
Sbjct: 59 AGGYQANQHTAQVDLAKLYQHFVLDKNNSQRRFTGDSDSHCQISKKIAHTMSHYYSQEHQ 118
Query: 117 AFFDVLTQYSIECLVRN 133
D +I ++ +
Sbjct: 119 IILDFYKNKNITDVLAD 135
>gi|116873720|ref|YP_850501.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
gi|116742598|emb|CAK21722.1| Rrf2 family protein [Listeria welshimeri serovar 6b str. SLCC5334]
Length = 156
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 8/141 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHN-DYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVR 58
M L+K D ++ D P I S ++ KIL+ LV +G++ +V
Sbjct: 1 MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSSSYISKILRKLVVSGLINSVS 60
Query: 59 GRRGGVRLCRPADQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLR 112
G GG L + ++I +LD+V+A E + S + G +TS R
Sbjct: 61 GNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFR 120
Query: 113 KALNAFFDVLTQYSIECLVRN 133
A + + L + LV
Sbjct: 121 NADKEYANYLYSQKLSVLVEQ 141
>gi|2226146|emb|CAA74438.1| hypothetical protein [Bacillus subtilis subsp. subtilis str. 168]
Length = 57
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 32/53 (60%)
Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
ECF ++K C + CGL VL +AL A+ VL +Y++ LV+N+ I K+
Sbjct: 1 VECFDANKNLCVISPVCGLKHVLNEALLAYLAVLDKYTLRDLVKNKEDIMKLL 53
>gi|49482825|ref|YP_040049.1| hypothetical protein SAR0601 [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257424713|ref|ZP_05601140.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427382|ref|ZP_05603781.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257430014|ref|ZP_05606398.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257432716|ref|ZP_05609076.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257435620|ref|ZP_05611668.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282903186|ref|ZP_06311077.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
C160]
gi|282904973|ref|ZP_06312831.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282907930|ref|ZP_06315764.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282910238|ref|ZP_06318042.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913431|ref|ZP_06321220.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
M899]
gi|282918384|ref|ZP_06326121.1| hypothetical protein SASG_01939 [Staphylococcus aureus subsp.
aureus C427]
gi|282923349|ref|ZP_06331029.1| hypothetical protein SARG_00669 [Staphylococcus aureus subsp.
aureus C101]
gi|283957396|ref|ZP_06374849.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|293500478|ref|ZP_06666329.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|293509423|ref|ZP_06668134.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|293524010|ref|ZP_06670697.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
M1015]
gi|295427137|ref|ZP_06819773.1| hypothetical protein SIAG_02503 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297590514|ref|ZP_06949153.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MN8]
gi|49240954|emb|CAG39621.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|257272283|gb|EEV04406.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
55/2053]
gi|257275575|gb|EEV07048.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
65-1322]
gi|257279211|gb|EEV09812.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
68-397]
gi|257282131|gb|EEV12266.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
E1410]
gi|257284811|gb|EEV14930.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M876]
gi|282314217|gb|EFB44607.1| hypothetical protein SARG_00669 [Staphylococcus aureus subsp.
aureus C101]
gi|282317518|gb|EFB47890.1| hypothetical protein SASG_01939 [Staphylococcus aureus subsp.
aureus C427]
gi|282322463|gb|EFB52785.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
M899]
gi|282325630|gb|EFB55938.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328175|gb|EFB58454.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282331798|gb|EFB61309.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282596141|gb|EFC01102.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
C160]
gi|283790847|gb|EFC29662.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
A017934/97]
gi|290920973|gb|EFD98034.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
M1015]
gi|291095483|gb|EFE25744.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
58-424]
gi|291467520|gb|EFF10035.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
M809]
gi|295128925|gb|EFG58555.1| hypothetical protein SIAG_02503 [Staphylococcus aureus subsp.
aureus EMRSA16]
gi|297576813|gb|EFH95528.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
MN8]
gi|312438984|gb|ADQ78055.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH60]
gi|315193964|gb|EFU24358.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
CGS00]
Length = 146
Score = 57.6 bits (138), Expect = 5e-07, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV ++ T+RG+
Sbjct: 1 MNL--EFNIAVHVLTFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 NIINFYKEKTIKDVIED 135
>gi|329927530|ref|ZP_08281715.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
gi|328938399|gb|EGG34788.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
Length = 149
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 22/130 (16%), Positives = 48/130 (36%), Gaps = 3/130 (2%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K ++ L+ H+ IA + ++L+ L +A ++E+ GR GG
Sbjct: 21 KTFSIAVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRDGGY 79
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
RL + A I++ +V + ++E +L + + +L
Sbjct: 80 RLRKNARDISLAEVYSILQVHSSISESMLDAAAGHCFAEEIKESFAGILSEIEESTLKIL 139
Query: 123 TQYSIECLVR 132
+I + +
Sbjct: 140 ESRTIADIAQ 149
>gi|329298886|ref|ZP_08256222.1| BadM/Rrf2 family transcriptional regulator [Plautia stali symbiont]
Length = 140
Score = 57.6 bits (138), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 2/123 (1%)
Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
+ + +A + F+ K++ PL + GI+ + GR G + L RPA +IT+ D+ +
Sbjct: 2 GKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPAAEITLRDIYTS 61
Query: 82 TEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
E + C + + S+ +A A VL ++ + ++
Sbjct: 62 VIEDKRLWASRPDVAPRCLVSANLCWYFKSIAEQAEEASLKVLETRTVADALNELKRRRR 121
Query: 140 IFN 142
+
Sbjct: 122 VLR 124
>gi|288933998|ref|YP_003438057.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Klebsiella variicola At-22]
gi|290510944|ref|ZP_06550313.1| transcriptional regulator [Klebsiella sp. 1_1_55]
gi|288888727|gb|ADC57045.1| transcriptional regulator, BadM/Rrf2 family [Klebsiella variicola
At-22]
gi|289775937|gb|EFD83936.1| transcriptional regulator [Klebsiella sp. 1_1_55]
Length = 159
Score = 57.2 bits (137), Expect = 6e-07, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 2/120 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RPAD+IT
Sbjct: 16 VAMAEQMGERSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A +VL ++++ +
Sbjct: 76 LRDIYLSVIEDKKLWASRPEVPARCVVSANACWYFKSIADEAEQASLNVLARHTVASALE 135
>gi|261407465|ref|YP_003243706.1| BadM/Rrf2 family transcriptional regulator [Paenibacillus sp.
Y412MC10]
gi|261283928|gb|ACX65899.1| transcriptional regulator, BadM/Rrf2 family [Paenibacillus sp.
Y412MC10]
Length = 149
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 3/130 (2%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
K ++ L+ H+ IA + ++L+ L +A ++E+ GR GG
Sbjct: 21 KTFSIAVQALVTLERHSGK-CSSGDIASYLHSESTLIRRVLKTLAQADLIESREGRDGGY 79
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVL 122
RL + A I++ +V + +++ +L + + +L
Sbjct: 80 RLRKNARDISLAEVYSILQVHSSISDSMLDAAAGHCFAEEIKESFAGILSEIEESTLKIL 139
Query: 123 TQYSIECLVR 132
+I + +
Sbjct: 140 ESRTIADIAQ 149
>gi|188533841|ref|YP_001907638.1| Transcription regulator [Erwinia tasmaniensis Et1/99]
gi|188028883|emb|CAO96745.1| Transcription regulator [Erwinia tasmaniensis Et1/99]
Length = 144
Score = 57.2 bits (137), Expect = 7e-07, Method: Composition-based stats.
Identities = 27/118 (22%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A +A+ + F+ K++ PL + GI+ + GR G +RL RPA QIT+ D
Sbjct: 10 AQSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIVSTLGRSGSIRLGRPAQQITLCD 69
Query: 78 VVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ + E + + C + + + ++A A DVL + ++ + +
Sbjct: 70 IYLSVIEDKPLMAGRPEVEPCCVVSANACWYFKELAKEAEQASLDVLAKRTVAEALHD 127
>gi|259908456|ref|YP_002648812.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96]
gi|224964078|emb|CAX55584.1| Transcription regulator, Rrf2 [Erwinia pyrifoliae Ep1/96]
Length = 143
Score = 57.2 bits (137), Expect = 8e-07, Method: Composition-based stats.
Identities = 26/118 (22%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A +A+ + F+ K++ PL + GI+ + GR G +RL RPA IT+ D
Sbjct: 10 AHSEGLRCTSKILADGLKANPSFVRKMMVPLTRDGIIISTLGRSGSIRLGRPAHLITLCD 69
Query: 78 VVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ + E + + C + + + ++A A DVL + ++ + +
Sbjct: 70 IYLSVIEDKPLMAGRPEAEPCCIVSANACWYFKQLAKEAEQASLDVLAKRTVADALHD 127
>gi|254462391|ref|ZP_05075807.1| Rrf2 family protein [Rhodobacterales bacterium HTCC2083]
gi|206678980|gb|EDZ43467.1| Rrf2 family protein [Rhodobacteraceae bacterium HTCC2083]
Length = 69
Score = 56.8 bits (136), Expect = 8e-07, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 32/63 (50%)
Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
++ E + EC C L SCGLTS LR A +AF+ L+ ++ L +N + +
Sbjct: 1 MRDLESQTELVECLRPDGGSCVLAPSCGLTSALRVAQDAFYTSLSTMTLADLTKNNAPMA 60
Query: 139 KIF 141
++
Sbjct: 61 RLL 63
>gi|206577940|ref|YP_002237025.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
gi|206566998|gb|ACI08774.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
Length = 159
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/131 (22%), Positives = 59/131 (45%), Gaps = 8/131 (6%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ A + + +A + F+ K++ PL + GI+ + GR G + L RPAD+IT
Sbjct: 16 VAMAEQMGERSTSAILAYGLEATPSFIRKLMVPLTRDGIIVSTLGRNGSIHLGRPADKIT 75
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D+ + E + C + + S+ +A A +VL ++++
Sbjct: 76 LRDIYLSVIEDKKLWASRPEVPARCVVSANACWYFKSIADEAEQASLNVLARHTVA---- 131
Query: 133 NRSSIKKIFNA 143
S+++ + NA
Sbjct: 132 --SALEAVKNA 140
>gi|160931599|ref|ZP_02078994.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753]
gi|156869470|gb|EDO62842.1| hypothetical protein CLOLEP_00431 [Clostridium leptum DSM 753]
Length = 168
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/138 (19%), Positives = 51/138 (36%), Gaps = 14/138 (10%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + L++ + +AE C + + K++ L KAG+V T G G
Sbjct: 16 MNSEFCIAVHGLVFLKLKK-QCLSSEALAENICTNPARVRKVMAKLKKAGLVSTKEGSEG 74
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF--- 119
G L + A+QIT+ + A + E +SH C + S + ++ +
Sbjct: 75 GYSLAKNAEQITLKQISAALQ-----IEFVSSHWRSGSQNLDCMVASGMADVMDRLYSDL 129
Query: 120 -----DVLTQYSIECLVR 132
L +I +
Sbjct: 130 DALCQKRLEGITIADVAA 147
>gi|57650052|ref|YP_185526.1| hypothetical protein SACOL0641 [Staphylococcus aureus subsp. aureus
COL]
gi|151220770|ref|YP_001331592.1| hypothetical protein NWMN_0558 [Staphylococcus aureus subsp. aureus
str. Newman]
gi|161508834|ref|YP_001574493.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|221141885|ref|ZP_03566378.1| hypothetical protein SauraJ_09680 [Staphylococcus aureus subsp.
aureus str. JKD6009]
gi|253732966|ref|ZP_04867131.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|258450951|ref|ZP_05699003.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|284023610|ref|ZP_06378008.1| hypothetical protein Saura13_03432 [Staphylococcus aureus subsp.
aureus 132]
gi|304381805|ref|ZP_07364452.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|57284238|gb|AAW36332.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
COL]
gi|150373570|dbj|BAF66830.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|160367643|gb|ABX28614.1| hypothetical protein USA300HOU_0588 [Staphylococcus aureus subsp.
aureus USA300_TCH1516]
gi|253729146|gb|EES97875.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH130]
gi|257861371|gb|EEV84180.1| conserved hypothetical protein [Staphylococcus aureus A5948]
gi|269940167|emb|CBI48543.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
TW20]
gi|302750485|gb|ADL64662.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
subsp. aureus str. JKD6008]
gi|304339591|gb|EFM05538.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|315196522|gb|EFU26871.1| hypothetical protein CGSSa01_02231 [Staphylococcus aureus subsp.
aureus CGS01]
gi|320139838|gb|EFW31700.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
MRSA131]
gi|329313316|gb|AEB87729.1| Transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
subsp. aureus T0131]
gi|329729739|gb|EGG66140.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
21193]
gi|329729854|gb|EGG66246.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
21189]
Length = 146
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDQSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 119 IIINFYNGKTIKDVIED 135
>gi|15923585|ref|NP_371119.1| hypothetical protein SAV0595 [Staphylococcus aureus subsp. aureus
Mu50]
gi|15926273|ref|NP_373806.1| hypothetical protein SA0552 [Staphylococcus aureus subsp. aureus
N315]
gi|148267055|ref|YP_001245998.1| BadM/Rrf2 family transcriptional regulator [Staphylococcus aureus
subsp. aureus JH9]
gi|150393103|ref|YP_001315778.1| hypothetical protein SaurJH1_0633 [Staphylococcus aureus subsp.
aureus JH1]
gi|156978924|ref|YP_001441183.1| hypothetical protein SAHV_0593 [Staphylococcus aureus subsp. aureus
Mu3]
gi|253316612|ref|ZP_04839825.1| hypothetical protein SauraC_10785 [Staphylococcus aureus subsp.
aureus str. CF-Marseille]
gi|253731206|ref|ZP_04865371.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|255005388|ref|ZP_05143989.2| hypothetical protein SauraM_02935 [Staphylococcus aureus subsp.
aureus Mu50-omega]
gi|258420350|ref|ZP_05683295.1| transcriptional regulator [Staphylococcus aureus A9719]
gi|258436521|ref|ZP_05689179.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|258442345|ref|ZP_05691108.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|258446283|ref|ZP_05694441.1| transcriptional regulator [Staphylococcus aureus A6300]
gi|258450058|ref|ZP_05698155.1| transcriptional regulator [Staphylococcus aureus A6224]
gi|258455097|ref|ZP_05703059.1| transcriptional regulator [Staphylococcus aureus A5937]
gi|269202216|ref|YP_003281485.1| hypothetical protein SAAV_0558 [Staphylococcus aureus subsp. aureus
ED98]
gi|282895034|ref|ZP_06303256.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117]
gi|295406974|ref|ZP_06816777.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819]
gi|297246135|ref|ZP_06929990.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796]
gi|13700487|dbj|BAB41784.1| hypothetical protein [Staphylococcus aureus subsp. aureus N315]
gi|14246363|dbj|BAB56757.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50]
gi|147740124|gb|ABQ48422.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
subsp. aureus JH9]
gi|149945555|gb|ABR51491.1| protein of unknown function UPF0074 [Staphylococcus aureus subsp.
aureus JH1]
gi|156721059|dbj|BAF77476.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
gi|253724947|gb|EES93676.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|257843664|gb|EEV68068.1| transcriptional regulator [Staphylococcus aureus A9719]
gi|257848792|gb|EEV72778.1| conserved hypothetical protein [Staphylococcus aureus A9299]
gi|257852074|gb|EEV76006.1| conserved hypothetical protein [Staphylococcus aureus A8115]
gi|257854877|gb|EEV77822.1| transcriptional regulator [Staphylococcus aureus A6300]
gi|257856677|gb|EEV79581.1| transcriptional regulator [Staphylococcus aureus A6224]
gi|257862737|gb|EEV85503.1| transcriptional regulator [Staphylococcus aureus A5937]
gi|262074506|gb|ACY10479.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED98]
gi|282762617|gb|EFC02755.1| hypothetical protein SGAG_02376 [Staphylococcus aureus A8117]
gi|285816296|gb|ADC36783.1| hypothetical protein SA2981_0572 [Staphylococcus aureus 04-02981]
gi|294968205|gb|EFG44231.1| hypothetical protein SMAG_02146 [Staphylococcus aureus A8819]
gi|297176981|gb|EFH36237.1| hypothetical protein SLAG_02218 [Staphylococcus aureus A8796]
gi|312829090|emb|CBX33932.1| transcriptional regulator family protein [Staphylococcus aureus
subsp. aureus ECT-R 2]
gi|315128897|gb|EFT84895.1| hypothetical protein CGSSa03_00785 [Staphylococcus aureus subsp.
aureus CGS03]
gi|329724366|gb|EGG60877.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
21172]
Length = 146
Score = 56.8 bits (136), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDQSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 IIINFYNEKTIKDVIED 135
>gi|260584236|ref|ZP_05851984.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
gi|260158862|gb|EEW93930.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
Length = 141
Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/127 (21%), Positives = 53/127 (41%), Gaps = 5/127 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L Y ++H+D Q+A C + + + K++ G V+ V G GG ++
Sbjct: 9 IHCLTYLSVHHDRRFSSQQLAHNACSNPVIVRKVMSLASSKGYVDVVNGVNGGYKIQVDP 68
Query: 71 DQITILDVVKATEESFFV-AECFASHKIDCPLVGS-CGLTSVLRK--ALNAFFDVLTQYS 126
I++ D+ E + + +S C + + C + S L++ N + S
Sbjct: 69 KDISLGDLFILVGEDKRLKKQYQSSLDEVCLVANNICSVFSDLQEEQIQNQV-KFYQKQS 127
Query: 127 IECLVRN 133
I +V+
Sbjct: 128 ILDIVKR 134
>gi|325105184|ref|YP_004274838.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
gi|324974032|gb|ADY53016.1| transcriptional regulator, BadM/Rrf2 family [Pedobacter saltans DSM
12145]
Length = 136
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Query: 30 IAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVA 89
IA + I+ + + K + L KAG+V++ G+ GG L + AD I + D+ KA A
Sbjct: 29 IAGSININSVLVRKEITELRKAGLVDSKEGKNGGFFLAKKADDINLGDLFKAVYPESIFA 88
Query: 90 ECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLVRN 133
S +CP+ L S+ +A + L ++S+ +
Sbjct: 89 FAKNSPNPNCPIGKDINKHLESLYVEAELSLVQELKRHSLAEFCQK 134
>gi|309777458|ref|ZP_07672413.1| transcriptional regulator superfamily [Erysipelotrichaceae
bacterium 3_1_53]
gi|308914772|gb|EFP60557.1| transcriptional regulator superfamily [Erysipelotrichaceae
bacterium 3_1_53]
Length = 150
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 14/132 (10%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L Y H ++A++ C + + K++ L KAG++ T G GG L P
Sbjct: 12 ALHALAYL-DHRRTKVSSEELAKSICTNPARIRKVMAKLKKAGLLITREGNSGGYELSAP 70
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL--------RKALNAFFDV 121
A I + D+ +A ++ S L C + + +
Sbjct: 71 ASAIRLSDLAQALQQPL-----LKSGWRSGTLNTYCMIATGMGSVVDTLEASLNEECLRH 125
Query: 122 LTQYSIECLVRN 133
L+ +IE + R
Sbjct: 126 LSHITIEDISRQ 137
>gi|329923736|ref|ZP_08279131.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
gi|328941102|gb|EGG37404.1| transcriptional regulator, Rrf2 family [Paenibacillus sp. HGF5]
Length = 120
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 15/107 (14%)
Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF-------- 92
+ KI+ L + GIV V G GG L +PA QIT L+V++ E + EC
Sbjct: 1 MSKIMSKLRQDGIVRAVPGVNGGYELAKPARQITFLEVIQVIEGRQQLFECSNLNSQQHR 60
Query: 93 -------ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ D P C + V+ A L + +I+ ++
Sbjct: 61 LLTEEKPSDRNEDKPGACVCLVKQVMDGAERQLNQYLEEQTIQSVLD 107
>gi|302381617|ref|YP_003817440.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Brevundimonas subvibrioides ATCC 15264]
gi|302192245|gb|ADK99816.1| transcriptional regulator, BadM/Rrf2 family [Brevundimonas
subvibrioides ATCC 15264]
Length = 180
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/121 (21%), Positives = 50/121 (41%), Gaps = 3/121 (2%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A + + +A + + + + ++ L KAG++ T G GG L +QIT+
Sbjct: 38 AFDAAHAAPSAVLAASVPTNPVVIRRVTALLAKAGLIATRPGASGGSWLLMRPEQITLDV 97
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRNRS 135
V+KA + + CP+ + VL A A + L++ +I L+ +
Sbjct: 98 VLKAVNGCAHLGS-APAGAKGCPVGEHIPRQVGKVLTLADRAASEALSRITIADLLAENA 156
Query: 136 S 136
Sbjct: 157 P 157
>gi|294849241|ref|ZP_06789984.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754]
gi|294823773|gb|EFG40199.1| hypothetical protein SKAG_01321 [Staphylococcus aureus A9754]
Length = 146
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDQSADVSLATLYKHFVLEKERHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 119 IIINFYNGKTIKDVIED 135
>gi|302332307|gb|ADL22500.1| transcriptional regulator, BadM/Rrf2 family [Staphylococcus aureus
subsp. aureus JKD6159]
Length = 146
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDQSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 IIINFYKEKTIKDVIED 135
>gi|262368151|pdb|3K69|A Chain A, Crystal Structure Of A Putative Transcriptional Regulator
(Lp_0360) From Lactobacillus Plantarum At 1.95 A
Resolution
Length = 162
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 9/133 (6%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ ++Y H D ++A++ ++ + + IL L K G + G+ GG +L
Sbjct: 14 AVHSILYLDAHRDSKVASRELAQSLHLNPVXIRNILSVLHKHGYLTGTVGKNGGYQLDLA 73
Query: 70 ADQITILDVVKATEESFFVAECF-------ASHKIDCPLVGSCG--LTSVLRKALNAFFD 120
+ D+ T F P+ + LT + A +
Sbjct: 74 LADXNLGDLYDLTIPPTISYARFITGPSKTDEQADQSPIAANISETLTDLFTVADRQYRA 133
Query: 121 VLTQYSIECLVRN 133
Q++ L +
Sbjct: 134 YYHQFTXADLQAD 146
>gi|82750300|ref|YP_416041.1| hypothetical protein SAB0545c [Staphylococcus aureus RF122]
gi|283769750|ref|ZP_06342642.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19]
gi|82655831|emb|CAI80233.1| probable DNA-binding protein [Staphylococcus aureus RF122]
gi|283459897|gb|EFC06987.1| transcriptional regulator [Staphylococcus aureus subsp. aureus H19]
gi|298693925|gb|ADI97147.1| hypothetical protein SAOV_0629c [Staphylococcus aureus subsp.
aureus ED133]
gi|323439450|gb|EGA97172.1| hypothetical protein SAO11_1751 [Staphylococcus aureus O11]
gi|323442133|gb|EGA99767.1| hypothetical protein SAO46_1970 [Staphylococcus aureus O46]
Length = 146
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV ++ T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 IIINFYKEKTIKDVIED 135
>gi|262280230|ref|ZP_06058014.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
gi|262258008|gb|EEY76742.1| transcriptional regulator [Acinetobacter calcoaceticus RUH2202]
Length = 80
Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
L A + +V+ + + EC + C L CGL +L +AL +F+ L QY
Sbjct: 1 LNPDALNSNLGSIVRILQGDNQIVEC---NTPPCVLRSHCGLKGILDQALESFYQSLDQY 57
Query: 126 SIECLVRNRSS 136
++ +++ S
Sbjct: 58 TLGEVLQQSKS 68
>gi|70727330|ref|YP_254246.1| hypothetical protein SH2331 [Staphylococcus haemolyticus JCSC1435]
gi|68448056|dbj|BAE05640.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 146
Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/137 (16%), Positives = 54/137 (39%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H++ +AE C++ + L ++ L ++++RG+
Sbjct: 1 MNL--EFNIAVHVLSFLTKHSEEQFNSQDLAELTCLNPVQLRRVTTTLNNQQYIDSIRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAE--CFASHKIDCPLVGSCGLT-SVLRKALNA 117
GG R IT+ + + + S + C + + T + ++ A
Sbjct: 59 GGGYRANAHTPTITLDTLYQLFVLDKLPTQRIFTGSEESHCTISRNIATTMNKYKEQETA 118
Query: 118 F-FDVLTQYSIECLVRN 133
+ +I +++
Sbjct: 119 LALNFYRNLTINDVIKE 135
>gi|116332849|ref|YP_794376.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
gi|116098196|gb|ABJ63345.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
ATCC 367]
Length = 154
Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 14/155 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L + L+Y + ++A + ++ + + IL L K G +E G+
Sbjct: 1 MRLD--FSVAVHSLLYLDENRPRKIASRELATSLQLNAVMIRNILSVLHKQGYIEGFVGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESF----FVAECFAS-----HKIDCPLVGSCGLTSVL 111
GG +L + +I + ++ T + + D + S LT +
Sbjct: 59 NGGYQLIKDLAEINVGELYDLTIPPTISYARFITGDSKGTQTTDETDISVNISQTLTDLF 118
Query: 112 RKALNAFFDVLTQYSIECLVRNRSS---IKKIFNA 143
A + Q+++ L R+ + +++ N
Sbjct: 119 TLADEDYRKFYHQFTMTDLKRDLHAHGFFRQLINP 153
>gi|296274609|ref|YP_003657240.1| BadM/Rrf2 family transcriptional regulator [Arcobacter
nitrofigilis DSM 7299]
gi|296098783|gb|ADG94733.1| transcriptional regulator, BadM/Rrf2 family [Arcobacter
nitrofigilis DSM 7299]
Length = 137
Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 3 LTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
++ + YG+ + + + P + +I+ I + +L ++L L AG+V + RG +
Sbjct: 4 ISSKGVYGLAAMHELLQNEENKPMQSREISARADIPQSYLEQLLGKLKHAGLVLSTRGSK 63
Query: 62 GGVRLCRPA 70
GG L +
Sbjct: 64 GGYMLAKDP 72
>gi|153814006|ref|ZP_01966674.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756]
gi|145848402|gb|EDK25320.1| hypothetical protein RUMTOR_00214 [Ruminococcus torques ATCC 27756]
Length = 86
Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 41/86 (47%)
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
+ K+G++E RG +GG +L + + T+ DVV A E F V EC I C +
Sbjct: 1 MNKSGLIEIRRGPKGGYQLAKDIGEFTLYDVVTAIEPDFAVMECVHHSCIRNESKEGCAV 60
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
L ++ +L + ++ +++
Sbjct: 61 HRELLGIQHSVEKLLKKKTMADILKK 86
>gi|325846523|ref|ZP_08169438.1| HTH-type transcriptional regulator CymR domain protein
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481281|gb|EGC84322.1| HTH-type transcriptional regulator CymR domain protein
[Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 53
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVK 50
M L+ R YG+R + Y A + D +S I+ + E +L ++++ L K
Sbjct: 1 MKLSTRGRYGLRAIHYLAENEDNGYISVSDISNTLKLPENYLEQLIRILKK 51
>gi|258422782|ref|ZP_05685685.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|257847013|gb|EEV71024.1| conserved hypothetical protein [Staphylococcus aureus A9635]
gi|283469886|emb|CAQ49097.1| probable DNA-binding protein [Staphylococcus aureus subsp. aureus
ST398]
Length = 146
Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 IIINFYKEKTIKDVIED 135
>gi|296275510|ref|ZP_06858017.1| hypothetical protein SauraMR_04160 [Staphylococcus aureus subsp.
aureus MR1]
Length = 146
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLANDQSAYVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ + +I+ ++ +
Sbjct: 119 IIINFYNEKTIKDVIED 135
>gi|221233070|ref|YP_002515506.1| Rrf2 family protein [Caulobacter crescentus NA1000]
gi|220962242|gb|ACL93598.1| Rrf2 family protein [Caulobacter crescentus NA1000]
Length = 140
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A D +++A + + + + ++ L KAG++ G GG L +PA+ IT+
Sbjct: 22 AFSADRAVASAELAASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAETITLDV 81
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
V++A + CP+ + + + A A + L+Q ++ L+
Sbjct: 82 VLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRAAILSADQAAAERLSQITVADLL 136
>gi|310815154|ref|YP_003963118.1| Putative HTH-type transcriptional regulator ywnA
[Ketogulonicigenium vulgare Y25]
gi|308753889|gb|ADO41818.1| Putative HTH-type transcriptional regulator ywnA
[Ketogulonicigenium vulgare Y25]
Length = 147
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 3/114 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A H D P I + + + + + + L +AG+V RG GG R+
Sbjct: 11 LHALLHMAEH-DGPMTSDAIGQCLGTNPVVVRRTMGLLREAGLVSAERGHAGGWRISADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVL 122
+++T+ D+ A E A C + S L +A
Sbjct: 70 NRVTLRDLHDALGEPAVFAIGNRHENPACLVEQSVNAALDRAFTEAEALLLSHF 123
>gi|21282279|ref|NP_645367.1| hypothetical protein MW0550 [Staphylococcus aureus subsp. aureus
MW2]
gi|49485461|ref|YP_042682.1| hypothetical protein SAS0554 [Staphylococcus aureus subsp. aureus
MSSA476]
gi|297208689|ref|ZP_06925117.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300912780|ref|ZP_07130222.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|21203716|dbj|BAB94415.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2]
gi|49243904|emb|CAG42329.1| putative DNA-binding protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|296886634|gb|EFH25539.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC 51811]
gi|300885884|gb|EFK81087.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
TCH70]
Length = 146
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 53/137 (38%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV ++ T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMINTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALN 116
GG + +++ + K E+ C + + T + N
Sbjct: 59 DGGYLSNDRSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYEQDEQN 118
Query: 117 AFFDVLTQYSIECLVRN 133
+ +I+ ++ +
Sbjct: 119 IIINFYKGKTIKDVIED 135
>gi|322373715|ref|ZP_08048251.1| putative Rrf2 family protein [Streptococcus sp. C150]
gi|321278757|gb|EFX55826.1| putative Rrf2 family protein [Streptococcus sp. C150]
Length = 145
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/142 (19%), Positives = 55/142 (38%), Gaps = 11/142 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY----PNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M + + +++Y +I I I+E I + +++ L K GI+ +
Sbjct: 1 MSYSAAFSQAVEIVLYLSIKQKEDKLKYLSIQVISEKLEIPIPSVKRLVSLLKKEGIISS 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESF-FVAECFASHKIDCPLVGSCG------LTS 109
G GG+ + + + IT+ D+ ++ E S + + S + S
Sbjct: 61 KTGIAGGLSIQKDVETITLFDIFQSIEGSKKPLFNFYDSFDLSQFENSSDVELYLNNFQE 120
Query: 110 VLRKALNAFFDVLTQYSIECLV 131
+L A +A L +I L+
Sbjct: 121 ILTNAESAMVKELKSCTISDLL 142
>gi|190576325|ref|YP_001974170.1| putative transcriptional regulator [Stenotrophomonas maltophilia
K279a]
gi|190014247|emb|CAQ47891.1| putative transcriptional regulatory protein [Stenotrophomonas
maltophilia K279a]
Length = 138
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
+ + H P Q+A + + ++L L KAG+V + RG GG L R A I
Sbjct: 1 MAHLVGHA-APRTSEQLASCLPTHPVVIRRLLAQLHKAGLVRSTRGHGGGSLLARDAAAI 59
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQYSIEC 129
T+ D+ A V CP+ + S L R+A L +++
Sbjct: 60 TLHDIYLAVGAPPLVQVGARDSGGGCPIQQ--LVNSALLEGAREAQRLLEARLQATTLDQ 117
Query: 130 L 130
L
Sbjct: 118 L 118
>gi|316935256|ref|YP_004110238.1| BadM/Rrf2 family transcriptional regulator [Rhodopseudomonas
palustris DX-1]
gi|315602970|gb|ADU45505.1| transcriptional regulator, BadM/Rrf2 family [Rhodopseudomonas
palustris DX-1]
Length = 146
Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ A P +A C + + + + + L AG+V + RG GG ++
Sbjct: 11 LHALLHMAER-GEPMTSETLAACMCTNPVVVRRTMGLLRDAGLVASARGPSGGWQIVADL 69
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIE 128
+ +T+ D+ A E A C + + L A D L + ++
Sbjct: 70 NAVTLRDLYDALGEPTVFAIGNRHEAPQCLVEQAVNAALDDAFADAEALLLDRLGKITLA 129
Query: 129 CLVRN 133
L +
Sbjct: 130 RLSAD 134
>gi|213028526|ref|ZP_03342973.1| transcriptional repressor NsrR [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 48
Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
C + +C L L KA+ +F L Y++ LV + K+
Sbjct: 3 CHITPACRLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLL 45
>gi|302384457|ref|YP_003820279.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
gi|302195085|gb|ADL02656.1| transcriptional regulator, BadM/Rrf2 family [Clostridium
saccharolyticum WM1]
Length = 143
Score = 55.3 bits (132), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 18/144 (12%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+T + ++Y ++A C + + K++ L KAGI+ T G G
Sbjct: 1 MTSEFAVAVHGIVYL-NQRKVTISSEELASNVCTNPARVRKVMAKLKKAGIITTKEGLEG 59
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF---- 118
G + + ++ + + A + +S + C + S + ++
Sbjct: 60 GYHFAKDSSEVNLKSICDALD-----VTFVSSSWKSGNVDTPCMIASGMSGVMDEIYGDL 114
Query: 119 ----FDVLTQYSIEC----LVRNR 134
+ + +I+ L++NR
Sbjct: 115 NELCRRRMEEITIKDIQDKLIKNR 138
>gi|57866192|ref|YP_187839.1| hypothetical protein SERP0243 [Staphylococcus epidermidis RP62A]
gi|242241934|ref|ZP_04796379.1| transcription regulator [Staphylococcus epidermidis W23144]
gi|251810017|ref|ZP_04824490.1| transcription regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|282874947|ref|ZP_06283822.1| transcriptional regulator [Staphylococcus epidermidis SK135]
gi|293368048|ref|ZP_06614680.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|57636850|gb|AAW53638.1| conserved hypothetical protein [Staphylococcus epidermidis RP62A]
gi|242234609|gb|EES36921.1| transcription regulator [Staphylococcus epidermidis W23144]
gi|251806468|gb|EES59125.1| transcription regulator [Staphylococcus epidermidis BCM-HMP0060]
gi|281296275|gb|EFA88794.1| transcriptional regulator [Staphylococcus epidermidis SK135]
gi|291317738|gb|EFE58152.1| conserved hypothetical protein [Staphylococcus epidermidis
M23864:W2(grey)]
gi|329737821|gb|EGG74056.1| transcriptional regulator [Staphylococcus epidermidis VCU045]
Length = 140
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 18/141 (12%), Positives = 54/141 (38%), Gaps = 10/141 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + A H+ ++A+ C++ + L ++L L + ++ RG+
Sbjct: 1 MNL--EFNIAVHVLCFLAQHDQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG + + Q+ + + + +++ + C + ++ +
Sbjct: 59 AGGYQANQHTAQVDLAKLYQHFVLDKNNSQRRFTGASDSHCQISKKIAHTMSHYYSQEHQ 118
Query: 117 AFFDVL--TQYS--IECLVRN 133
D + + +++
Sbjct: 119 IILDFYKDKNITDVLADILQE 139
>gi|224370917|ref|YP_002605081.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum
HRM2]
gi|223693634|gb|ACN16917.1| hypothetical protein HRM2_38590 [Desulfobacterium autotrophicum
HRM2]
Length = 143
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 5/144 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + ++ L + A H+ P + I+ I+ L + L L KAGI+ T++G
Sbjct: 1 MSASSKLSNSVKALCFLAKHHPVPQNSACISMDTGINASKLRRHLSALAKAGILRTIQGA 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLT----SVLRKALN 116
GG L + + I + ++ A E + D + + + + +
Sbjct: 61 AGGFVLKKAPEDIHLQEIYCAL-EDRKAFHLDITTNPDNTVEETTIVNNYFLDLFTEIQV 119
Query: 117 AFFDVLTQYSIECLVRNRSSIKKI 140
D + + ++ + S K +
Sbjct: 120 EIEDKMRTIKLSHIINHISDNKGV 143
>gi|228922119|ref|ZP_04085429.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
gi|228940467|ref|ZP_04103036.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228953676|ref|ZP_04115716.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228959598|ref|ZP_04121279.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001]
gi|228979946|ref|ZP_04140265.1| Rrf2 [Bacillus thuringiensis Bt407]
gi|229047069|ref|ZP_04192691.1| Rrf2 [Bacillus cereus AH676]
gi|229070848|ref|ZP_04204076.1| Rrf2 [Bacillus cereus F65185]
gi|229080611|ref|ZP_04213131.1| Rrf2 [Bacillus cereus Rock4-2]
gi|229110826|ref|ZP_04240389.1| Rrf2 [Bacillus cereus Rock1-15]
gi|229128677|ref|ZP_04257655.1| Rrf2 [Bacillus cereus BDRD-Cer4]
gi|229145982|ref|ZP_04274361.1| Rrf2 [Bacillus cereus BDRD-ST24]
gi|229151583|ref|ZP_04279785.1| Rrf2 [Bacillus cereus m1550]
gi|229179684|ref|ZP_04307034.1| Rrf2 [Bacillus cereus 172560W]
gi|229191500|ref|ZP_04318483.1| Rrf2 [Bacillus cereus ATCC 10876]
gi|228591980|gb|EEK49816.1| Rrf2 [Bacillus cereus ATCC 10876]
gi|228603790|gb|EEK61261.1| Rrf2 [Bacillus cereus 172560W]
gi|228631827|gb|EEK88454.1| Rrf2 [Bacillus cereus m1550]
gi|228637590|gb|EEK94041.1| Rrf2 [Bacillus cereus BDRD-ST24]
gi|228654870|gb|EEL10730.1| Rrf2 [Bacillus cereus BDRD-Cer4]
gi|228672705|gb|EEL27986.1| Rrf2 [Bacillus cereus Rock1-15]
gi|228702712|gb|EEL55178.1| Rrf2 [Bacillus cereus Rock4-2]
gi|228712238|gb|EEL64185.1| Rrf2 [Bacillus cereus F65185]
gi|228724258|gb|EEL75593.1| Rrf2 [Bacillus cereus AH676]
gi|228779785|gb|EEM28033.1| Rrf2 [Bacillus thuringiensis Bt407]
gi|228800090|gb|EEM47026.1| Rrf2 [Bacillus thuringiensis serovar pakistani str. T13001]
gi|228805910|gb|EEM52489.1| Rrf2 [Bacillus thuringiensis serovar kurstaki str. T03a001]
gi|228819232|gb|EEM65288.1| Rrf2 [Bacillus thuringiensis serovar berliner ATCC 10792]
gi|228837535|gb|EEM82866.1| Rrf2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1]
Length = 116
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R D+I + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNNQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|228909201|ref|ZP_04073028.1| Rrf2 [Bacillus thuringiensis IBL 200]
gi|228850445|gb|EEM95272.1| Rrf2 [Bacillus thuringiensis IBL 200]
Length = 116
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R D++ + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNNQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|319400096|gb|EFV88332.1| transcriptional regulator family protein [Staphylococcus
epidermidis FRI909]
Length = 140
Score = 55.3 bits (132), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + HN ++A+ C++ + L ++L L + ++ RG+
Sbjct: 1 MNL--EFNIAVHVLCFLVQHNQEQFNSKELAKLTCLNPVQLRRVLAYLTEHNYIKVQRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALN 116
GG + Q+ + + + +++ C + ++ +
Sbjct: 59 AGGYQANHHTAQVDLAKLYQHFVLDKNNSQRRFTGDSDSHCQISKKIAHTMSHYYSQEHQ 118
Query: 117 AFFDVLTQYSIECLVRN 133
D +I ++ +
Sbjct: 119 IILDFYKNKNITDVLAD 135
>gi|16124387|ref|NP_418951.1| hypothetical protein CC_0132 [Caulobacter crescentus CB15]
gi|13421241|gb|AAK22119.1| conserved hypothetical protein [Caulobacter crescentus CB15]
Length = 153
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/116 (20%), Positives = 50/116 (43%), Gaps = 3/116 (2%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A D +++A + + + + ++ L KAG++ G GG L +PA+ IT+
Sbjct: 35 AFSADRAVASAELAASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAETITLDV 94
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLV 131
V++A + CP+ + + + A A + L+Q ++ L+
Sbjct: 95 VLRAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRAAILSADQAAAERLSQITVADLL 149
>gi|228966286|ref|ZP_04127344.1| Rrf2 [Bacillus thuringiensis serovar sotto str. T04001]
gi|228793419|gb|EEM40964.1| Rrf2 [Bacillus thuringiensis serovar sotto str. T04001]
Length = 116
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R D+I + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEINLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|229156990|ref|ZP_04285071.1| Rrf2 [Bacillus cereus ATCC 4342]
gi|228626480|gb|EEK83226.1| Rrf2 [Bacillus cereus ATCC 4342]
Length = 116
Score = 54.9 bits (131), Expect = 3e-06, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R ++ + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNNQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|228924846|ref|ZP_04088001.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228834764|gb|EEM80248.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 144
Score = 54.9 bits (131), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/134 (18%), Positives = 50/134 (37%), Gaps = 4/134 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M ++ ++L + P I I + IL L GI+ +
Sbjct: 1 MKISISLTVASQILSILKKNPLTPYDSEFIGRTLSIHPKIIRGILLCLRDTGIIHNNH-K 59
Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
G L + +IT+LDV ++ + + K +CP+ + L +L +A +
Sbjct: 60 GKGWYLIKDVHRITLLDVYRSVCRVEGEICSIHENLKFNCPIGANIQFVLEVILIQAQDE 119
Query: 118 FFDVLTQYSIECLV 131
+L ++ L+
Sbjct: 120 MEQILENVTMGQLI 133
>gi|149183666|ref|ZP_01862080.1| YrzC [Bacillus sp. SG-1]
gi|148848614|gb|EDL62850.1| YrzC [Bacillus sp. SG-1]
Length = 83
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
++RG GG L QIT D+++ E E + + +
Sbjct: 1 SIRGAYGGYVLGNEPSQITAGDIIRILEGPISPVEGIEDEEPAK--------RELWMRIR 52
Query: 116 NAFFDVLTQYSIECLV 131
+A +VL +IE L
Sbjct: 53 DAVKEVLDNTTIEDLA 68
>gi|313682246|ref|YP_004059984.1| transcriptional regulator, badm/rrf2 family [Sulfuricurvum kujiense
DSM 16994]
gi|313155106|gb|ADR33784.1| transcriptional regulator, BadM/Rrf2 family [Sulfuricurvum kujiense
DSM 16994]
Length = 134
Score = 54.5 bits (130), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 10/129 (7%)
Query: 3 LTKRTDYGIRVLMYCAIHN-DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + YG+ + A ++ +I+ IS +L ++L L + +V ++RG
Sbjct: 4 LSSKAIYGLAAMHVLAHAPRSRAMQVREISAMTQISHGYLEQLLSILRRNNLVSSIRGAS 63
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
GG +L R A +I ++++++A E F +KI+ + S L
Sbjct: 64 GGYKLARLAHEIEVIEIIEALEGPF--------YKIEGNIGSSLILEYFWNDIEEKMR-T 114
Query: 122 LTQYSIECL 130
L + L
Sbjct: 115 LFSMKLSEL 123
>gi|325143452|gb|EGC65778.1| transcriptional regulator family protein [Neisseria meningitidis
M01-240013]
Length = 52
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVK 50
M LT + + + ++ A++ ++S I+E IS +L ++ L +
Sbjct: 1 MRLTTKGRFAVTAMLDLAMNAQTGAVKLSAISERQNISLSYLEQLFGKLRR 51
>gi|229073754|ref|ZP_04206856.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
gi|228709362|gb|EEL61434.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
Length = 144
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 4/135 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + ++L + P I I + IL L GI+ +
Sbjct: 1 MKINISLTVASQILSILKKNPLTPFDSEFIGRTLSIHPKIIRGILLCLRDTGIIHNNH-K 59
Query: 61 RGGVRLCRPADQITILDVVKAT-EESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNA 117
G L + IT+LDV ++ + + K +CP+ + L +L +A +
Sbjct: 60 GEGWYLIKDVHHITLLDVYRSVCRVEGEICSIHENLKFNCPIGANIQFVLEIILIQAQDE 119
Query: 118 FFDVLTQYSIECLVR 132
+L ++ L+R
Sbjct: 120 MEQILENVTMGQLIR 134
>gi|149204175|ref|ZP_01881143.1| transcriptional regulator, BadM/Rrf2 family protein [Roseovarius
sp. TM1035]
gi|149142617|gb|EDM30662.1| transcriptional regulator, BadM/Rrf2 family protein [Roseovarius
sp. TM1035]
Length = 131
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/119 (21%), Positives = 47/119 (39%), Gaps = 3/119 (2%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A H + P I++ + + + + + L +AGIV + RG GG R+ + +T+
Sbjct: 1 MAEH-EGPMTSEAISQCMGTNPVVVRRTMAFLREAGIVSSARGHAGGWRITADLEVVTLH 59
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGS--CGLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ KA E A + C + S L L +A + ++ L +
Sbjct: 60 QLHKALGEPAIFAIGNRTENPFCLVEQSVNAALEHTLEEAEALLLERFAHVTLADLAAD 118
>gi|229097857|ref|ZP_04228809.1| Rrf2 [Bacillus cereus Rock3-29]
gi|229103939|ref|ZP_04234617.1| Rrf2 [Bacillus cereus Rock3-28]
gi|229116864|ref|ZP_04246248.1| Rrf2 [Bacillus cereus Rock1-3]
gi|228666696|gb|EEL22154.1| Rrf2 [Bacillus cereus Rock1-3]
gi|228679507|gb|EEL33706.1| Rrf2 [Bacillus cereus Rock3-28]
gi|228685533|gb|EEL39459.1| Rrf2 [Bacillus cereus Rock3-29]
Length = 116
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R ++ + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGIGGGFIFARDLSEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|228916014|ref|ZP_04079587.1| Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228928446|ref|ZP_04091486.1| Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228934686|ref|ZP_04097519.1| Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228947024|ref|ZP_04109320.1| Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228986485|ref|ZP_04146621.1| Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229092366|ref|ZP_04223538.1| Rrf2 [Bacillus cereus Rock3-42]
gi|229122928|ref|ZP_04252136.1| Rrf2 [Bacillus cereus 95/8201]
gi|229197522|ref|ZP_04324248.1| Rrf2 [Bacillus cereus m1293]
gi|228585967|gb|EEK44059.1| Rrf2 [Bacillus cereus m1293]
gi|228660512|gb|EEL16144.1| Rrf2 [Bacillus cereus 95/8201]
gi|228691068|gb|EEL44835.1| Rrf2 [Bacillus cereus Rock3-42]
gi|228773306|gb|EEM21736.1| Rrf2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228812598|gb|EEM58923.1| Rrf2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
gi|228824938|gb|EEM70737.1| Rrf2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228831177|gb|EEM76774.1| Rrf2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228843609|gb|EEM88685.1| Rrf2 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 116
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R D++ + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|167464005|ref|ZP_02329094.1| transcriptional regulator [Paenibacillus larvae subsp. larvae
BRL-230010]
Length = 76
Score = 54.5 bits (130), Expect = 5e-06, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 38/71 (53%)
Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
+ IAE +SE +L +++ PL AG+V+++RG GG L RPA+QIT +++ E
Sbjct: 6 SLKSIAEKHQLSEHYLEQLVAPLRNAGLVKSIRGAYGGYILSRPAEQITTGQIIRVLEGP 65
Query: 86 FFVAECFASHK 96
+
Sbjct: 66 ISPVDFEEEDD 76
>gi|229185625|ref|ZP_04312804.1| Rrf2 [Bacillus cereus BGSC 6E1]
gi|228597855|gb|EEK55496.1| Rrf2 [Bacillus cereus BGSC 6E1]
Length = 116
Score = 54.1 bits (129), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R ++ + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|228901883|ref|ZP_04066051.1| Rrf2 [Bacillus thuringiensis IBL 4222]
gi|228857735|gb|EEN02227.1| Rrf2 [Bacillus thuringiensis IBL 4222]
Length = 116
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R ++ + + + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLGEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCVVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|116512690|ref|YP_811597.1| BadM/Rrf2 family transcriptional regulator [Lactococcus lactis
subsp. cremoris SK11]
gi|116108344|gb|ABJ73484.1| transcriptional regulator, BadM/Rrf2 family [Lactococcus lactis
subsp. cremoris SK11]
Length = 154
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K + + VL+ A D + +++ +S+ L K+L+ LV ++E+
Sbjct: 1 MKLSKHLEEAVYVLLILATQKDQQALKSKTLSKLLEVSDSSLKKVLRQLVVNNLIESTAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113
+ GG +L + ++I++ DV+ A E F++ + L + L K
Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADLSHIGQRIFPNKAHTLESESLVIETLTK 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A N + L + + L+
Sbjct: 121 AQNLYALELEKLKLSDLL 138
>gi|229031073|ref|ZP_04187084.1| Rrf2 [Bacillus cereus AH1271]
gi|228730234|gb|EEL81203.1| Rrf2 [Bacillus cereus AH1271]
Length = 116
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R +I + ++ + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEINLWNIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|296454824|ref|YP_003661968.1| BadM/Rrf2 family transcriptional regulator [Bifidobacterium longum
subsp. longum JDM301]
gi|296184256|gb|ADH01138.1| transcriptional regulator, BadM/Rrf2 family [Bifidobacterium longum
subsp. longum JDM301]
Length = 140
Score = 54.1 bits (129), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+Y H+ +AE C + + K+++PL AG++ T G GG L RP
Sbjct: 8 AVHALVYL-DHHATHLPSQILAENICTNAARVRKVMRPLASAGLIATKEGAEGGYALARP 66
Query: 70 ADQITILDVVKATEESFFVAECFASH-KIDCPLVGSC--GLTSVLRKALNAFFDVLTQYS 126
A +IT+ V +AT +F DC + S + + + L +
Sbjct: 67 AAEITLRAVAEATGTTFVKVNWTPGDVHEDCLVSSSMGAVMNDIYAGLNRTCLEQLEHTT 126
Query: 127 IECLVRN 133
I +
Sbjct: 127 IHDITEQ 133
>gi|254460863|ref|ZP_05074279.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacterales
bacterium HTCC2083]
gi|206677452|gb|EDZ41939.1| transcriptional regulator, BadM/Rrf2 family [Rhodobacteraceae
bacterium HTCC2083]
Length = 114
Score = 54.1 bits (129), Expect = 7e-06, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 40 FLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF-VAECFASHKID 98
+L ++ + + +V + RG GG +L R A I+I +++ A +E+ ++ D
Sbjct: 3 YLEQLFSKIRRNDLVVSTRGHGGGYKLARDASAISIEEILLAVDENIDALSTGAGMKGGD 62
Query: 99 CPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
C + + L + ++ ++ +
Sbjct: 63 CGSIEQVLSNKMWESLSAQVHLYLHRTTLADVIDD 97
>gi|261885524|ref|ZP_06009563.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
subsp. venerealis str. Azul-94]
Length = 123
Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 19/69 (27%), Positives = 35/69 (50%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
P + I++ +S+ +L ++L L G V +++G +GG L + D+IT D+
Sbjct: 9 QKNPVSLKDISQNIGVSKNYLEQVLNTLRNTGFVSSIKGLKGGYFLNKTLDEITFYDIFY 68
Query: 81 ATEESFFVA 89
A E F +
Sbjct: 69 ALENDFGLT 77
>gi|325125820|gb|ADY85150.1| Hypothetical conserved protein [Lactobacillus delbrueckii subsp.
bulgaricus 2038]
Length = 149
Score = 53.8 bits (128), Expect = 8e-06, Method: Composition-based stats.
Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 6/139 (4%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + K + I VL+ A+ D P + ++ +S+ +L KIL L K G++
Sbjct: 1 MKINKSVEQAIYVLLILALQKDGEPLKSRVLSTHLKVSDSYLKKILMKLKKGGLIAASAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGLTSVLRKA 114
+ GG +L P I+I DV A + + E + ++ +A
Sbjct: 61 KNGGYQLAWPIGAISIKDVFTALQLTDDQLELSHLAQYIFPDPNHVAQSEQEISQAFHQA 120
Query: 115 LNAFFDVLTQYSIECLVRN 133
AF+D L Q+ ++ L+++
Sbjct: 121 FAAFYDQLGQFKLDRLLKD 139
>gi|118475649|ref|YP_892090.1| BadM/Rrf2 family transcriptional regulator [Campylobacter fetus
subsp. fetus 82-40]
gi|118414875|gb|ABK83295.1| transcriptional regulator, BadM/Rrf2 family [Campylobacter fetus
subsp. fetus 82-40]
Length = 125
Score = 53.8 bits (128), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 36/69 (52%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
P + I++ +S+ +L ++L L AG V +++G +GG L + D+IT D+
Sbjct: 11 QKNPVSLKDISQNIGVSKNYLEQVLNTLRNAGFVSSIKGLKGGYFLNKTLDEITFYDIFY 70
Query: 81 ATEESFFVA 89
A E F +
Sbjct: 71 ALENDFGLT 79
>gi|229162267|ref|ZP_04290234.1| Rrf2 [Bacillus cereus R309803]
gi|228621194|gb|EEK78053.1| Rrf2 [Bacillus cereus R309803]
Length = 116
Score = 53.4 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 19/111 (17%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ S I+E+ + + + K+L L K +++ G GG ++ + ++ + T
Sbjct: 1 MSTSSAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFACDLSEVNLWNIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PEANGQCIVGSNMRTVLFTIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|229012594|ref|ZP_04169768.1| Rrf2 [Bacillus mycoides DSM 2048]
gi|229168130|ref|ZP_04295858.1| Rrf2 [Bacillus cereus AH621]
gi|229174084|ref|ZP_04301620.1| Rrf2 [Bacillus cereus MM3]
gi|228609416|gb|EEK66702.1| Rrf2 [Bacillus cereus MM3]
gi|228615374|gb|EEK72471.1| Rrf2 [Bacillus cereus AH621]
gi|228748754|gb|EEL98605.1| Rrf2 [Bacillus mycoides DSM 2048]
Length = 116
Score = 53.4 bits (127), Expect = 9e-06, Method: Composition-based stats.
Identities = 20/111 (18%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ + + + K+L L K +++ G GG R +I + ++ + T
Sbjct: 1 MSTSNAISESAGVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLSEINLWNMYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCIVGSNMRKVLFAIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|239947324|ref|ZP_04699077.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia
endosymbiont of Ixodes scapularis]
gi|239921600|gb|EER21624.1| iron-sulfur cluster assembly transcription factor IscR [Rickettsia
endosymbiont of Ixodes scapularis]
Length = 107
Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 22 DYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKA 81
+ +++I+ IS +L +I L KA +V+ +RG +GG L ++I I D++ A
Sbjct: 10 NRSLCLNKISVKQNISLNYLEQIFSKLKKADLVKAIRGLKGGYILIGNLEEIKISDIMDA 69
Query: 82 TEESFFVAECFASHKIDC-PLVGSCGLTSVLRKALNAF 118
E+F + C+ C P C + +
Sbjct: 70 VNENFIMTTCYKKSVKTCVPBTIKCNSHKLWKGLGKHI 107
>gi|125624777|ref|YP_001033260.1| hypothetical protein llmg_2002 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124493585|emb|CAL98570.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300071577|gb|ADJ60977.1| hypothetical protein LLNZ_10320 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 154
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/138 (21%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHND-YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+K + + VL+ A D + ++ +S+ L K+L+ LV ++E+
Sbjct: 1 MKLSKHLEEAVYVLLILATQKDQQALKSKTLSNLLEVSDSSLKKVLRQLVVNNLIESTAS 60
Query: 60 RRGGVRLCRPADQITILDVVKATEESFFVAECFAS------HKIDCPLVGSCGLTSVLRK 113
+ GG +L + ++I++ DV+ A E F++ + L + L K
Sbjct: 61 KDGGFKLKKRINEISLKDVMAAVEGEEFISADLSHIGQRIFPNKAHTLESESLVIETLTK 120
Query: 114 ALNAFFDVLTQYSIECLV 131
A N + L + + L+
Sbjct: 121 AQNLYALELEKLKLSDLL 138
>gi|229121703|ref|ZP_04250926.1| hypothetical protein bcere0016_20040 [Bacillus cereus 95/8201]
gi|228661747|gb|EEL17364.1| hypothetical protein bcere0016_20040 [Bacillus cereus 95/8201]
Length = 116
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/111 (16%), Positives = 48/111 (43%), Gaps = 3/111 (2%)
Query: 26 RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEES 85
Q+++ C++ + + K+++ L K G++ T G GG ++T+ + + T +
Sbjct: 3 TSEQLSDNLCVNAVRIRKVMRMLKKKGLISTKEGFTGGYIFKHNPKEVTLGQIYELTSNN 62
Query: 86 FFVAECFASH-KIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLVRN 133
+ + H + DC + +T + + + L +++ +V
Sbjct: 63 SLASNWRSGHIEKDCVISSGIGQVMTDIFSEGDQCYKLFLDGINVQDVVEK 113
>gi|229140014|ref|ZP_04268577.1| Rrf2 [Bacillus cereus BDRD-ST26]
gi|228643420|gb|EEK99688.1| Rrf2 [Bacillus cereus BDRD-ST26]
Length = 116
Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/111 (18%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
+ + I+E+ C+ + + K+L L K +++ G GG R D++ + + + T
Sbjct: 1 MSTSNAISESACVHPVRIRKVLSLLKKHKFIQSKEGTGGGFIFARDLDEVNLWHIYQITS 60
Query: 84 ESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
E +C C + + L ++ A + L Y+++ +V
Sbjct: 61 EGALQPKC-PESNDQCIVGSNMRKVLFTIFLGAEEHLGEYLKNYTMKEVVD 110
>gi|116333404|ref|YP_794931.1| transcriptional regulator [Lactobacillus brevis ATCC 367]
gi|116098751|gb|ABJ63900.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus brevis
ATCC 367]
Length = 168
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 8 DYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ + ++ + I + P S +AE IS +L KI+Q L IV+TV GR GG+ L
Sbjct: 8 EQALCIVAFLGIQDRQIPLHSSLVAERLGISTSYLKKIVQRLAAGKIVKTVSGRVGGIVL 67
Query: 67 CRPADQITILDVVKATEESFFVA 89
R IT+LD+ A E
Sbjct: 68 TRNPHDITLLDIFDAIEGPQSFV 90
>gi|229184988|ref|ZP_04312178.1| Transcriptional regulator [Bacillus cereus BGSC 6E1]
gi|228598463|gb|EEK56093.1| Transcriptional regulator [Bacillus cereus BGSC 6E1]
Length = 85
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 33/86 (38%), Gaps = 6/86 (6%)
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
+ K G++ + G +GG L + I+ LD++ A E + EC K C +
Sbjct: 1 MTKEGMIHSSSGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPGC------LI 54
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
+ A + L I L +
Sbjct: 55 NEAMLAAEEKMEEELRNQKIVDLAKK 80
>gi|300777515|ref|ZP_07087373.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
gi|300503025|gb|EFK34165.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910]
Length = 145
Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 5/132 (3%)
Query: 1 MHL-TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M + + Y I+ + A I I+E F KILQ L K ++ + +G
Sbjct: 1 MLIFSNTCQYAIKACIVLATERKK-IGIIDISEQIGTPTYFTSKILQQLTKKQLISSGKG 59
Query: 60 RRGGVRLCRPA-DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
+ GG L + +TI D+ + E + C K C C + +
Sbjct: 60 KGGGFFLTDEQFENLTIKDIYENFEGKEVLTSCLLGLKQ-CNGDNPCPIHHLAVAVKEKV 118
Query: 119 FDVLTQYSIECL 130
++ +Y I+ L
Sbjct: 119 L-IMFKYKIKDL 129
>gi|254421048|ref|ZP_05034772.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
gi|196187225|gb|EDX82201.1| Transcriptional regulator superfamily [Brevundimonas sp. BAL3]
Length = 156
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 7/140 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIH----NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
M ++R L Y A + +A + + + + ++ L KAG++ T
Sbjct: 1 MSDSQRFPVAAHALAYMAHKGAFSPAQAAPSALLAASVPTNPVVVRRVTALLAKAGLIAT 60
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKA 114
G GG L R + I + +V+KA + + CP+ + L A
Sbjct: 61 RPGATGGSWLLRQPEDIRLDEVLKAVNGCAHIGS-PPAGAKGCPISEHIPRQVGKALTAA 119
Query: 115 LNAFFDVLTQYSIECLVRNR 134
A + L++ +I L+
Sbjct: 120 DEAATEALSKITIADLLDEN 139
>gi|65320070|ref|ZP_00393029.1| COG1959: Predicted transcriptional regulator [Bacillus anthracis
str. A2012]
Length = 85
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 19/86 (22%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
+ K G + + G +GG L + I+ LD++ A E + EC K C +
Sbjct: 1 MTKEGXIHSSSGPKGGYSLSHNWEDISFLDIIHAIEGKTSLFECCLHEKPGC------LI 54
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
+ A + L I L +
Sbjct: 55 NEAMLAAEEKMEEELRNQKIVDLAKK 80
>gi|317404221|gb|EFV84659.1| BadM/Rrf2 family Transcriptional regulator [Achromobacter
xylosoxidans C54]
Length = 147
Score = 52.2 bits (124), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 5/106 (4%)
Query: 1 MHLTKRTDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M + T + VL++ + I + + +F + + L AG V +
Sbjct: 1 MQ--RDTRLARLLHVLVHMHLRGGA-TTSQTIGQMLHTNPVFARRTMSVLRDAGFVTSTG 57
Query: 59 GRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
G GG L D++T+ DV A + A A CP+ +
Sbjct: 58 GPGGGWTLACELDRLTVGDVCDAIAHATLFAVGPAQDNAACPVEAA 103
>gi|257793177|ref|ZP_05642156.1| transcriptional regulator [Staphylococcus aureus A9781]
gi|258407662|ref|ZP_05680797.1| transcriptional regulator [Staphylococcus aureus A9763]
gi|282928731|ref|ZP_06336326.1| conserved hypothetical protein [Staphylococcus aureus A10102]
gi|257787149|gb|EEV25489.1| transcriptional regulator [Staphylococcus aureus A9781]
gi|257840742|gb|EEV65200.1| transcriptional regulator [Staphylococcus aureus A9763]
gi|282589614|gb|EFB94701.1| conserved hypothetical protein [Staphylococcus aureus A10102]
Length = 138
Score = 52.2 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG +
Sbjct: 1 MHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQS 60
Query: 71 DQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYS 126
+++ + K E+ C + + T + N + + +
Sbjct: 61 ADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNEKT 120
Query: 127 IECLVRN 133
I+ ++ +
Sbjct: 121 IKDVIED 127
>gi|87159993|ref|YP_493280.1| hypothetical protein SAUSA300_0577 [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|88194356|ref|YP_499149.1| hypothetical protein SAOUHSC_00582 [Staphylococcus aureus subsp.
aureus NCTC 8325]
gi|87125967|gb|ABD20481.1| putative transcriptional regulator [Staphylococcus aureus subsp.
aureus USA300_FPR3757]
gi|87201914|gb|ABD29724.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|320141829|gb|EFW33657.1| transcriptional regulator [Staphylococcus aureus subsp. aureus
MRSA177]
Length = 138
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ VL + H+ S +AE C++ + L ++ LV +++T+RG+ GG +
Sbjct: 1 MHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGKDGGYLANDQS 60
Query: 71 DQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT--SVLRKALNAFFDVLTQYS 126
+++ + K E+ C + + T + N + +
Sbjct: 61 ADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATTMSHYQQDEQNIIINFYNGKT 120
Query: 127 IECLVRN 133
I+ ++ +
Sbjct: 121 IKDVIED 127
>gi|323463348|gb|ADX75501.1| transcriptional regulator, putative [Staphylococcus
pseudintermedius ED99]
Length = 140
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H +AE C++ + L +++ L + G V+ VRG+
Sbjct: 1 MNL--EFNIAVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMSKLQQKGDVKVVRGQ 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA------ 114
+GG I + + + F + C ++ + +
Sbjct: 59 KGGYLATEDGLAIKLEPLFRLFNRPENHGRLFTGNP-----SMHCKISQKIEQVMYGHYL 113
Query: 115 --LNAFFDVLTQYSIECLVRNRSSIKK 139
+ +I ++ ++
Sbjct: 114 IEQEIIANYYQGQTIGDILNQIREVEA 140
>gi|170769186|ref|ZP_02903639.1| tranScriptional repressor of the iscrsua operon [Escherichia
albertii TW07627]
gi|194436072|ref|ZP_03068174.1| transcriptional regulator [Escherichia coli 101-1]
gi|170121838|gb|EDS90769.1| tranScriptional repressor of the iscrsua operon [Escherichia
albertii TW07627]
gi|194424800|gb|EDX40785.1| transcriptional regulator [Escherichia coli 101-1]
Length = 119
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 20/131 (15%), Positives = 51/131 (38%), Gaps = 29/131 (22%)
Query: 4 TKRTDYGIRVLM-YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
++R + V++ + + P + Q+++ +S +L +I + L ++ +V+ RG G
Sbjct: 8 SQRASVAVMVMIKFVKQYTGKPISLRQLSKET-VSLSYLEQIFRYLRESSLVKATRGPGG 66
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G + + ++ D+V+A + C + + + L
Sbjct: 67 GYIPTK--ENYSVGDIVRAMK---------------CSGLYT----------QHVILAAL 99
Query: 123 TQYSIECLVRN 133
S+ L +
Sbjct: 100 DNISLTSLQED 110
>gi|319893600|ref|YP_004150475.1| hypothetical protein SPSINT_2311 [Staphylococcus pseudintermedius
HKU10-03]
gi|317163296|gb|ADV06839.1| hypothetical protein SPSINT_2311 [Staphylococcus pseudintermedius
HKU10-03]
Length = 141
Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 15/147 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H +AE C++ + L +++ L + G V+ VRG+
Sbjct: 2 MNL--EFNIAVHVLTFLNQHKGEVFNSQALAENVCVNPVQLRRVMSKLQQKGDVKVVRGQ 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA------ 114
+GG I + + + F + C ++ + +
Sbjct: 60 KGGYLATEDGLAIKLEPLFRLFNRPENHGRLFTGNP-----SMHCKISQKIEQVMYGHYL 114
Query: 115 --LNAFFDVLTQYSIECLVRNRSSIKK 139
+ +I ++ ++
Sbjct: 115 IEQEIIANYYQGQTIGDILNQIREVEA 141
>gi|148543420|ref|YP_001270790.1| BadM/Rrf2 family transcriptional regulator [Lactobacillus reuteri
DSM 20016]
gi|227363569|ref|ZP_03847686.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
gi|325681763|ref|ZP_08161282.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
gi|148530454|gb|ABQ82453.1| transcriptional regulator, BadM/Rrf2 family [Lactobacillus reuteri
DSM 20016]
gi|227071365|gb|EEI09671.1| transcriptional regulator [Lactobacillus reuteri MM2-3]
gi|324978854|gb|EGC15802.1| transcriptional regulator [Lactobacillus reuteri MM4-1A]
Length = 106
Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
+ L KAG++ TV G + + I++ D+ A E + C + G+
Sbjct: 1 MSALNKAGLINTVHGAADPALA-KSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGGN 59
Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
L ++A A L + S++ ++ + I +A
Sbjct: 60 IQETLDGFYQQAETAAKAKLAKTSLQDVIDTIRVKQAIKDA 100
>gi|254498599|ref|ZP_05111319.1| truncated rrf2 family protein [Legionella drancourtii LLAP12]
gi|254352190|gb|EET11005.1| truncated rrf2 family protein [Legionella drancourtii LLAP12]
Length = 87
Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ RPA +I++ ++ A EE EC DC L G C + R A L
Sbjct: 1 MRRPATEISVSQIIFALEEHRGFTECSLQP-NDCSLQGVCTIQGNWRLISQAIETALDSV 59
Query: 126 SIECLVR 132
S++ L +
Sbjct: 60 SLDTLAK 66
>gi|291457248|ref|ZP_06596638.1| transcriptional regulator family protein [Bifidobacterium breve DSM
20213]
gi|291381083|gb|EFE88601.1| transcriptional regulator family protein [Bifidobacterium breve DSM
20213]
Length = 135
Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 6/122 (4%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+Y H + +AE C + + K+++PL AG+ T G GG L +PA
Sbjct: 1 MHALVYL-DHRNTHLPSQILAENICTNAARVRKVMRPLAAAGLAATKEGAEGGYALAQPA 59
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
IT+ V +AT +F ++ + C ++S + ++ +D L + +E L
Sbjct: 60 ADITLSTVAEATGTTF-----VDANWKPGDIHEECLVSSSMGAVMDGIYDGLNRTCLEQL 114
Query: 131 VR 132
Sbjct: 115 AH 116
>gi|149924361|ref|ZP_01912728.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
gi|149814749|gb|EDM74321.1| putative transcriptional regulator [Plesiocystis pacifica SIR-1]
Length = 120
Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
IAE I +L +I+ L KAG V RG RGG RL +PA +I + DV+
Sbjct: 5 GYASAHVIAEQQGIPSRYLEEIIGELRKAGFVVGKRGPRGGYRLAKPASEIAVADVINVL 64
Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
+ A + + V F + ++E L+ +
Sbjct: 65 TTTSSTATGESQDE---------ITRLVESSVDERFEAAVGALNLEQLIGEARERNR 112
>gi|184152829|ref|YP_001841170.1| hypothetical protein LAR_0174 [Lactobacillus reuteri JCM 1112]
gi|183224173|dbj|BAG24690.1| conserved hypothetical protein [Lactobacillus reuteri JCM 1112]
Length = 107
Score = 51.1 bits (121), Expect = 4e-05, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 41/102 (40%), Gaps = 3/102 (2%)
Query: 44 ILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG 103
++ L KAG++ TV G + + I++ D+ A E + C + G
Sbjct: 1 MMSALNKAGLINTVHGAADPALA-KSPENISLYDIFLAIEGDAHLFTIDERTNPQCIVGG 59
Query: 104 SCG--LTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
+ L ++A A L + S++ ++ + I +A
Sbjct: 60 NIQETLDGFYQQAETAAKAKLAKTSLQDVIDTIRVKQAIKDA 101
>gi|330990699|ref|ZP_08314655.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
gi|329762139|gb|EGG78627.1| HTH-type transcriptional regulator nsrR [Gluconacetobacter sp.
SXCC-1]
Length = 79
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAE-CFASHKIDCPLVGSCGLTSVLRK 113
RGR GGV L RP I + VV+ E V + C C L +C L + R+
Sbjct: 1 MGTRGRNGGVSLARPPKDINVGHVVRLMETEGEVIKGCAPLQGRPCVLADACRLRHLARQ 60
Query: 114 ALNAFFDVLTQYSIECLV 131
A +AF VL S+ L+
Sbjct: 61 ATDAFMAVLDGMSVHDLL 78
>gi|301059962|ref|ZP_07200842.1| HTH-type transcriptional regulator CymR domain protein [delta
proteobacterium NaphS2]
gi|300445934|gb|EFK09819.1| HTH-type transcriptional regulator CymR domain protein [delta
proteobacterium NaphS2]
Length = 42
Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFL 41
M L+ R+ YG R+++ A ++ P RI IAE IS +L
Sbjct: 1 MKLSTRSRYGTRMVLDLAKRFDEGPVRIGDIAEREEISVKYL 42
>gi|317969720|ref|ZP_07971110.1| transcriptional regulator [Synechococcus sp. CB0205]
Length = 144
Score = 50.7 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
N +S+IAEA + L ++L L +A +VE RGR+GG RL RPA+ I + +V+K
Sbjct: 20 NPQWCSVSEIAEAQGLPAPMLEQLLLQLRRAALVEAKRGRQGGYRLSRPAEAIPVGEVLK 79
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
A + D L S+ R+ +A L Q +++ L+ + S ++
Sbjct: 80 AVGAPLVL-----DAPGDSSRAEQDVLKSMGRRLQSALDRELKQLTLQELLFDLQSWQEC 134
Query: 141 FN 142
+
Sbjct: 135 LS 136
>gi|154244034|ref|YP_001414992.1| BadM/Rrf2 family transcriptional regulator [Xanthobacter
autotrophicus Py2]
gi|154158119|gb|ABS65335.1| transcriptional regulator, BadM/Rrf2 family [Xanthobacter
autotrophicus Py2]
Length = 146
Score = 50.7 bits (120), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
Query: 33 ACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECF 92
+ L +LQ LV AG+++ VRG RGG L R ++++ ++V+ E + E
Sbjct: 35 RHGLPPRRLEPVLQALVHAGVLKGVRGPRGGYELARERRRVSVAEIVRVVEGAEEEKEII 94
Query: 93 ASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRS 135
+ + + + A + F L ++E L R+
Sbjct: 95 LPP------LVTEVVQPAVAAAEDTFDTALDAVTLEDLCRSAD 131
>gi|163814554|ref|ZP_02205943.1| hypothetical protein COPEUT_00705 [Coprococcus eutactus ATCC 27759]
gi|158450189|gb|EDP27184.1| hypothetical protein COPEUT_00705 [Coprococcus eutactus ATCC 27759]
Length = 139
Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats.
Identities = 18/136 (13%), Positives = 44/136 (32%), Gaps = 4/136 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M + + +++L C ++ D + IA + + L K ++ + G
Sbjct: 1 MRFSTKYTLALQILTICYLYKDEKITSNFIAAHTGADASIIRYTMLDLKKKDLIVSKPGP 60
Query: 61 RGGVRLCRPADQITILDVVKATEESFFV---AECFASHKIDCPLVGSCGLTSVLRKALNA 117
GG L ++T+ DV + E F + +
Sbjct: 61 -GGTNLNCDLSKLTLYDVYELVAEPSDNLLKFYDFPDTATTIDKQIKESADVIFENIKHQ 119
Query: 118 FFDVLTQYSIECLVRN 133
F+ + + + + ++
Sbjct: 120 IFNTMKETYVSDIYKD 135
>gi|218462085|ref|ZP_03502176.1| putative transcriptional regulator protein [Rhizobium etli Kim 5]
Length = 117
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 52 GIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA------SHKIDCPLVGSC 105
GI++TV G RGG +L + ++I++LD++ A E C + D C
Sbjct: 4 GILDTVPGPRGGYKLAKAPEEISLLDILLAVEGPAPAFRCAEIRQRGPNPVSDRFFAKPC 63
Query: 106 GLTSVLRKALNAFFDVLTQYSIECL 130
+++ + +A + L + SI L
Sbjct: 64 TISAAMLRAERVYRAELAKTSIADL 88
>gi|330721757|gb|EGG99748.1| hypothetical protein imdm_738 [gamma proteobacterium IMCC2047]
Length = 132
Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats.
Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 8/134 (5%)
Query: 6 RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ + V++ A + + Q+A + ++L L K ++ G+
Sbjct: 2 KERLALAVMLNIARNYYRDKSALTNKQLAIRLRTPSDIVRQVLSALEKQSLISPTNGKVV 61
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
+P D++++ DV+ A + H L + ++ + +
Sbjct: 62 RYLPAKPLDEMSVADVLHAVRHANE-----DRHLNPSMLPQDQEVDTIFETLNSTIVETF 116
Query: 123 TQYSIECLVRNRSS 136
Q +I+ LV+
Sbjct: 117 AQQTIKQLVKEEKD 130
>gi|329891241|ref|ZP_08269584.1| transcriptional regulator family protein [Brevundimonas diminuta
ATCC 11568]
gi|328846542|gb|EGF96106.1| transcriptional regulator family protein [Brevundimonas diminuta
ATCC 11568]
Length = 158
Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats.
Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 6/131 (4%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
Y A + + +A + + + + ++ L KAG++ T G GG L R + I
Sbjct: 22 AYAATEAE---PSAVLAASVPTNPVVIRRVTALLAKAGLIATRPGASGGSWLLRRPEDIR 78
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
+ +V+KA + + CP+ + L A A L++ +I L+
Sbjct: 79 LDEVLKAVNGCAQLGS-PPAGAKGCPVGEHIPRQVAKALTAADQAAGAALSKITIADLLA 137
Query: 133 NRSSIKKIFNA 143
S + + F
Sbjct: 138 EDSEVLRPFAP 148
>gi|314932822|ref|ZP_07840191.1| putative DNA-binding protein [Staphylococcus caprae C87]
gi|313654503|gb|EFS18256.1| putative DNA-binding protein [Staphylococcus caprae C87]
Length = 120
Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats.
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 6/114 (5%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H + ++AE C++ + L +++ L ++ TVRG+
Sbjct: 1 MNL--EFNIAVHVLSFLTKHKNEKFNSKELAELTCLNPVQLRRVVANLSDQQLITTVRGK 58
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKA 114
GG + + + + ++ + +A C ++ + +
Sbjct: 59 DGGYKANQYTSTVNLAELYQQFV----LARDNNQRVYTGDRNSHCDISKHIAQI 108
>gi|298290312|ref|YP_003692251.1| Rrf2 family/BadM/Rrf2 family transcriptional regulator/Rrf2 family
[Starkeya novella DSM 506]
gi|296926823|gb|ADH87632.1| transcriptional regulator, BadM/Rrf2 family [Starkeya novella DSM
506]
Length = 147
Score = 49.5 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/149 (20%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 2 HLTKRTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
L+ ++ I ++ A+H P +A + L +LQ LV AG+++ VRG
Sbjct: 3 RLSDKSLLAIAAVVDVALHARGMPVAAKALAARHDLPPRHLEPVLQALVHAGVLKGVRGP 62
Query: 61 RGGVRLCRPADQITILDVVK--------ATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
RGG L R +IT+ +VV+ A + + +
Sbjct: 63 RGGYELARERRRITVAEVVRVVEAESEEALDGFPPLVRDIVQPAVAEAERAF-------- 114
Query: 113 KALNAFFDVLTQYSIECLVRN--RSSIKK 139
L ++E L R+ +++++K
Sbjct: 115 ------EAALDGVTVEDLCRSAAQNTLRK 137
>gi|220935818|ref|YP_002514717.1| ribonuclease BN [Thioalkalivibrio sp. HL-EbGR7]
gi|219997128|gb|ACL73730.1| ribonuclease BN [Thioalkalivibrio sp. HL-EbGR7]
Length = 439
Score = 49.1 bits (116), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 13/138 (9%)
Query: 2 HLTK--RTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
L+ + +RV+ P + +A + + ++ L KAG++ T
Sbjct: 308 QLSSALKERLALRVMKSIGTRFHEGRGPTPLDDLAHELDMPVEAVERVTDALRKAGLLVT 367
Query: 57 VRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
R QIT+ + A A + P + +++
Sbjct: 368 AGQDPVSFVPGRDTGQITLKACLDAVRG--------ADSTVPGPRGEDESVDTLMEALDR 419
Query: 117 AFFDVLTQYSIECLVRNR 134
A + L ++ LV +
Sbjct: 420 ALGERLEGVTLAALVERQ 437
>gi|299782698|gb|ADJ40696.1| Transcriptional regulator [Lactobacillus fermentum CECT 5716]
Length = 97
Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
+ L KAG++ T G + ++IT+LDV +A E+ + + DCP+ +
Sbjct: 1 MSRLTKAGLLVTHPGTASPALA-KEPEEITLLDVYRAVEDQYHLLHIDEQTNPDCPIGKN 59
Query: 105 CG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
LT K A + + ++ + N
Sbjct: 60 IQGVLTQEFAKVQAAAEAAMQEITLAEITAN 90
>gi|255029797|ref|ZP_05301748.1| hypothetical protein LmonL_13364 [Listeria monocytogenes LO28]
gi|332312785|gb|EGJ25880.1| Rrf2 family protein [Listeria monocytogenes str. Scott A]
Length = 143
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 8/129 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEAC-CISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++Y D P I S ++ KIL+ LV +G++ +V G GG L +
Sbjct: 1 MTMLY-TQKVDVPISSVTIHHRLRDSSPSYISKILRKLVVSGLINSVSGNNGGFTLAKDP 59
Query: 71 DQITILDVVKATEE------SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
++I +LD+V+A E + S + G +TS R A + + L
Sbjct: 60 EEINLLDIVEAVEGKIDTYPDSDLIHTVFSDYHEFAESGIHTITSAFRNADKEYANYLYS 119
Query: 125 YSIECLVRN 133
+ LV
Sbjct: 120 QKLSVLVEQ 128
>gi|254431044|ref|ZP_05044747.1| Rrf2 family protein [Cyanobium sp. PCC 7001]
gi|197625497|gb|EDY38056.1| Rrf2 family protein [Cyanobium sp. PCC 7001]
Length = 144
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 43/85 (50%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L K T GIR L+ A + ++A A + E L ++L L +AG+V RGR G
Sbjct: 2 LAKSTTDGIRALLELATVPERWRSGPELAAAQQLPEPMLEQLLLRLRRAGVVVARRGRLG 61
Query: 63 GVRLCRPADQITILDVVKATEESFF 87
G RL RPA +I + V+ A +
Sbjct: 62 GYRLARPAAEIRLATVIAALQAPKH 86
>gi|228924839|ref|ZP_04087995.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
gi|228834814|gb|EEM80297.1| Transcriptional regulator, BadM/Rrf2 [Bacillus thuringiensis
serovar huazhongensis BGSC 4BD1]
Length = 102
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVG-- 103
+ K+GIV +G+ G L + IT+LDV +A E E + + CP+
Sbjct: 1 MKKSGIVHVTQGK-NGTHLFKDPKFITLLDVYRAVEVVEKNKLFSFHENPNPMCPVGARI 59
Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131
L +L ++ + L +++ +V
Sbjct: 60 HMVLELILIQSQEKMEEFLQNVTMQQVV 87
>gi|312141915|ref|YP_004009251.1| transcriptional regulator [Rhodococcus equi 103S]
gi|311891254|emb|CBH50573.1| putative transcriptional regulator [Rhodococcus equi 103S]
Length = 127
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 9/119 (7%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV--RLCRPADQITIL 76
QIA + + + + ++L L KAG+ ++ RGR G R +
Sbjct: 9 RRGHEVTTSEQIATSVNTNPVVIRRLLSELRKAGLADSRRGRAGRSRGTWRRSPARRLPG 68
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSC--GLTSVLRKALNAFFDVLTQYSIECLVRN 133
D + +C + +T+V A L + ++E ++R+
Sbjct: 69 D-----RTGTGLRPASRDTDPECVVGHGSGPAMTAVFDDVEAALRRELAKTTLEDVLRD 122
>gi|260584120|ref|ZP_05851868.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
gi|260158746|gb|EEW93814.1| transcriptional regulator [Granulicatella elegans ATCC 700633]
Length = 96
Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats.
Identities = 10/84 (11%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEE--SFFVAECFASHKIDCPLVGSC--GLTS 109
+ + + G L + +++L++ AT+E + + ++CP+ ++
Sbjct: 3 IISSHQGKSGYELTKSPKDLSLLEIYFATQEVERISLFPVHQNRNLNCPVGRYIEGAISP 62
Query: 110 VLRKALNAFFDVLTQYSIECLVRN 133
+ L +++ ++ N
Sbjct: 63 IFSDVEEELERELKNKTLKDVIDN 86
>gi|78223975|ref|YP_385722.1| ribonuclease BN [Geobacter metallireducens GS-15]
gi|78195230|gb|ABB32997.1| tRNA-processing RNAse BN [Geobacter metallireducens GS-15]
Length = 453
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 11/130 (8%)
Query: 8 DYGIRVLMY---CAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ ++Y A HND P I+ +AE + E + ++L+ L G++ G
Sbjct: 318 RLAL-AVIYEISLAFHNDRPPWSITGLAEHLDVPERSVRELLECLEDEGVLAAGCGDDPL 376
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
R + I + +V+ + + + A L
Sbjct: 377 YLPARDLEHIRVGEVLSSLRNQGVGLPGQLGG------EDHVVVDDLWEAIEAAVRSALG 430
Query: 124 QYSIECLVRN 133
S L
Sbjct: 431 DLSFRDLAER 440
>gi|317507858|ref|ZP_07965558.1| hypothetical protein HMPREF9336_01930 [Segniliparus rugosus ATCC
BAA-974]
gi|316253831|gb|EFV13201.1| hypothetical protein HMPREF9336_01930 [Segniliparus rugosus ATCC
BAA-974]
Length = 62
Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS--IKKI-FNAG 144
EC CPL +C L LR+A AFF VL + ++ +VR + ++++ +AG
Sbjct: 2 EC--EGADPCPLRQACRLRGALRQAQEAFFQVLDRQTVADMVRVPTEPILRELVLSAG 57
>gi|300114145|ref|YP_003760720.1| ribonuclease BN [Nitrosococcus watsonii C-113]
gi|299540082|gb|ADJ28399.1| ribonuclease BN [Nitrosococcus watsonii C-113]
Length = 455
Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/134 (13%), Positives = 49/134 (36%), Gaps = 8/134 (5%)
Query: 6 RTDYGIRVLMYC--AIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ G+ +L A H P + +A+ + + I++ L +A +V
Sbjct: 317 KERVGLLILARVGEAFHQGCPPPTLENLAKHFSLPSYLIEDIIESLKRARLVTATGAEPP 376
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
G L + +T+ V+ ++ ++ + S + ++ K A +
Sbjct: 377 GYLLSKDPATVTVRKVLAIIRQAEE-----QKFPLESISLKSPAVDGIMEKIEQALDQAM 431
Query: 123 TQYSIECLVRNRSS 136
+++ L+ ++
Sbjct: 432 KGATLKDLIGDKRE 445
>gi|186473779|ref|YP_001861121.1| BadM/Rrf2 family transcriptional regulator [Burkholderia phymatum
STM815]
gi|184196111|gb|ACC74075.1| transcriptional regulator, BadM/Rrf2 family [Burkholderia phymatum
STM815]
Length = 136
Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
Query: 36 ISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASH 95
+ + + +++ L +G+V + GR GG + A+ IT DV +A E A ++
Sbjct: 31 TNAVVVRRVMGRLRDSGLVTSTGGREGGWSVACAAEMITARDVFEALESENVFAIGASAD 90
Query: 96 KIDCPLVG--SCGLTSVLRKALNAFFDVLTQYSIECLVR 132
CP+ + L+ L A + ++E L R
Sbjct: 91 HPHCPVEKAVNAKLSIALDNAQQKLLENPGGTTLEELAR 129
>gi|229073669|ref|ZP_04206783.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
gi|228709456|gb|EEL61516.1| Transcriptional regulator, BadM/Rrf2 [Bacillus cereus F65185]
Length = 104
Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE--ESFFVAECFASHKIDCPLVG-- 103
L K+GIV +G+ G L + IT+LDV +A E E + + CP+
Sbjct: 3 LKKSGIVHVSQGK-NGAHLFKAPQFITLLDVYRAVEVVEKNKLFSFHENPNPMCPVGARI 61
Query: 104 SCGLTSVLRKALNAFFDVLTQYSIECLV 131
L +L ++ + L +++ +V
Sbjct: 62 HMVLELILIQSQEKMEEFLQNVTMQQVV 89
>gi|294341336|emb|CAZ89752.1| putative transcriptional regulator [Thiomonas sp. 3As]
Length = 164
Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/133 (15%), Positives = 45/133 (33%), Gaps = 1/133 (0%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M T + + V++ A + + A ++ L + + L+ AG++
Sbjct: 1 MKPTHQEQLALEVMLALARARSGSASVRDLGAALQMAPSTLKTLFERLMDAGLLRCKSAP 60
Query: 61 RGGVRLCRPADQITILDVVKA-TEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFF 119
L R IT D+V A + A + + + L ++
Sbjct: 61 DDCYGLARAPRWITAADIVLASQQGPGGAAHGRLIGARNRASLEATALRALETALNRCSL 120
Query: 120 DVLTQYSIECLVR 132
+ L +++ L R
Sbjct: 121 EFLQAITLQDLAR 133
>gi|307594758|ref|YP_003901075.1| putative CBS domain-containing signal transduction protein
[Vulcanisaeta distributa DSM 14429]
gi|307549959|gb|ADN50024.1| putative signal transduction protein with CBS domains
[Vulcanisaeta distributa DSM 14429]
Length = 297
Score = 46.8 bits (110), Expect = 9e-04, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 7 TDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ Y + L+ + + P + IAE I+E + + L G +E+ G GG
Sbjct: 8 STYASILNALVELYMASKKPVKSRDIAEKLGINEGTVRNSMVALRAMGYIESKTGPYGGY 67
Query: 65 RLCRPADQI 73
+ A +
Sbjct: 68 VPTQKALEY 76
>gi|16519776|ref|NP_443896.1| conserved hypothetical 25.8 kDa protein [Sinorhizobium fredii
NGR234]
gi|2496645|sp|P55486|Y4IC_RHISN RecName: Full=Uncharacterized protein y4iC
gi|2182440|gb|AAB91698.1| conserved hypothetical 25.8 kDa protein [Sinorhizobium fredii
NGR234]
Length = 230
Score = 46.8 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 27 ISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESF 86
+++IA I + FL IL L V G+RL +PA +I I V++A +
Sbjct: 62 VTEIAMRNKIPKKFLDTILLELRNVLCVRRRV-HMAGIRLSKPASEIMIGQVIRALDGPL 120
Query: 87 FVAECFASHKIDCPLVGS 104
C + C
Sbjct: 121 APIHCASRSAFACDDCND 138
>gi|292493155|ref|YP_003528594.1| ribonuclease BN [Nitrosococcus halophilus Nc4]
gi|291581750|gb|ADE16207.1| ribonuclease BN [Nitrosococcus halophilus Nc4]
Length = 456
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 18/147 (12%)
Query: 1 MHLTKRT----------DYGIRVLMYC--AIHNDY-PNRISQIAEACCISELFLFKILQP 47
M+LTK+ G+ +L+ A H + P ++ ++E + + ++L+P
Sbjct: 302 MNLTKKEPLRLSNRLKERVGLLILVQVGEAFHRGHSPPKLEGLSEHLGLPSYLIEELLEP 361
Query: 48 LVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
L KA ++ L + D I + + ++ ++ + +
Sbjct: 362 LKKAHLITETGDEPPSYLLRKDPDTIPVRKALDILRQAEE-----QDFPMEQATLKVPAV 416
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNR 134
V+ K A L + +++ L+R +
Sbjct: 417 EGVMEKIEQALDQALEEATLKDLIRGQ 443
>gi|327311265|ref|YP_004338162.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
gi|326947744|gb|AEA12850.1| signal-transduction protein [Thermoproteus uzoniensis 768-20]
Length = 291
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ L+ + P + +IAEA + E ++ I+ L G+V + G GG A
Sbjct: 17 LKTLVDIYSRENIPVKSKEIAEALKVHEGYIRNIMSVLKSMGLVISKAGPHGGYVPTSKA 76
Query: 71 DQI 73
I
Sbjct: 77 YDI 79
>gi|171186006|ref|YP_001794925.1| signal transduction protein [Thermoproteus neutrophilus V24Sta]
gi|170935218|gb|ACB40479.1| putative signal transduction protein with CBS domains
[Thermoproteus neutrophilus V24Sta]
Length = 286
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 25/62 (40%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ L+ + P + IA A I E ++ +L L G+V + G GG A
Sbjct: 12 LKALVELYNKENSPVKSRDIANALGIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTSKA 71
Query: 71 DQ 72
Sbjct: 72 TD 73
>gi|119872079|ref|YP_930086.1| signal transduction protein [Pyrobaculum islandicum DSM 4184]
gi|119673487|gb|ABL87743.1| putative signal transduction protein with CBS domains
[Pyrobaculum islandicum DSM 4184]
Length = 286
Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 27/63 (42%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++VL+ + P + IA A I E ++ +L L G+V + G GG A
Sbjct: 12 LKVLVELYNKGNTPVKSKDIASALGIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTSKA 71
Query: 71 DQI 73
+
Sbjct: 72 TDM 74
>gi|257457619|ref|ZP_05622786.1| transcriptional regulator family protein [Treponema vincentii
ATCC 35580]
gi|257445005|gb|EEV20081.1| transcriptional regulator family protein [Treponema vincentii
ATCC 35580]
Length = 110
Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 1 MHLTKRTDYGIRVLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M ++ R + L+ DY IAE+ ++ + + KIL L KAG+V+T G
Sbjct: 18 MKISVRFTAAVHTLLCILYFEKDYRVTSDFIAESTGVNAVIIRKILLQLQKAGLVKTAAG 77
Query: 60 RRG 62
G
Sbjct: 78 VGG 80
>gi|291545492|emb|CBL18600.1| hypothetical protein CK1_02420 [Ruminococcus sp. SR1/5]
Length = 98
Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 2/90 (2%)
Query: 55 ETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL--TSVLR 112
T L +PADQIT+LD+ KA E + DC + + L
Sbjct: 1 MTSVAGHARPSLSKPADQITLLDIYKAVEGEKPLLHLDTHTNPDCGVGINIQLSLQEFYN 60
Query: 113 KALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
+ + + +++ ++ I N
Sbjct: 61 EIQKTAEEKMNMITLQDIINTYYQRTSILN 90
>gi|126460347|ref|YP_001056625.1| signal transduction protein [Pyrobaculum calidifontis JCM 11548]
gi|126250068|gb|ABO09159.1| putative signal transduction protein with CBS domains
[Pyrobaculum calidifontis JCM 11548]
Length = 286
Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ L P + IA I E ++ +L L G+V + G GG A
Sbjct: 12 LKALAELYNKTGTPVKSRDIANVLGIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTPKA 71
Query: 71 DQ 72
Sbjct: 72 AD 73
>gi|213026899|ref|ZP_03341346.1| DNA-binding transcriptional regulator IscR [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
Length = 89
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+ +V+ A +ES C C ++ R + L ++ LV N+
Sbjct: 1 VGEVISAVDESVDATRCQGKGGCQ--GGDKCLTHALWRDLSDRLTGFLNNITLGELVNNQ 58
Query: 135 SSI 137
+
Sbjct: 59 EVL 61
>gi|327463097|gb|EGF09418.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis SK1]
Length = 96
Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 9/86 (10%)
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSV 110
+ TV GG + + I++LDV A E +S + DCP+ + + +V
Sbjct: 1 MITVARGTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNV 58
Query: 111 LRK----ALNAFFDVLTQYSIECLVR 132
L A L Q S+ +V
Sbjct: 59 LDDRLAAIQAAMEAELAQTSLAEVVA 84
>gi|319943764|ref|ZP_08018045.1| YihY family protein [Lautropia mirabilis ATCC 51599]
gi|319742997|gb|EFV95403.1| YihY family protein [Lautropia mirabilis ATCC 51599]
Length = 653
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 23/143 (16%), Positives = 41/143 (28%), Gaps = 17/143 (11%)
Query: 10 GIRVLMYCA---IHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVR 65
+ ++ + + R ++A + IL+ LV GI V +
Sbjct: 319 ALAIMQALGERYLQGNAALRTEELARRFHTPGYAIDGILEALVAHGIVVRVDKSEPAAWM 378
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
R IT V++A P + A + VL+
Sbjct: 379 PGRDLSNITPWQVLEAV-------RHAGDIHPPEPDAD--RIIQTFSYAQDQMSAVLSTI 429
Query: 126 SIECLV----RNRSSIKKIFNAG 144
S L+ R R ++ G
Sbjct: 430 SFRDLLTQPPRERQPVRSNMAHG 452
>gi|325968965|ref|YP_004245157.1| signal transduction protein with CBS domains [Vulcanisaeta
moutnovskia 768-28]
gi|323708168|gb|ADY01655.1| putative signal transduction protein with CBS domains
[Vulcanisaeta moutnovskia 768-28]
Length = 297
Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 7 TDYG--IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ Y + L+ + + P + IAE I+E + + L G +E+ G GG
Sbjct: 8 STYASILNALVELYMMSKRPVKSRDIAEKLSINEGTVRNSMVALRAMGYIESKTGPYGGY 67
Query: 65 RLCRPADQI 73
+ A +
Sbjct: 68 VPTQKALEY 76
>gi|18313985|ref|NP_560652.1| hypothetical protein PAE3319 [Pyrobaculum aerophilum str. IM2]
gi|18161560|gb|AAL64834.1| conserved protein with 2 CBS domains [Pyrobaculum aerophilum str.
IM2]
Length = 286
Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ L+ P + IA I E ++ +L L G+V + G GG A
Sbjct: 12 LKALVELYNKEGAPVKSRDIANVLKIHEGYVRNMLSILKSMGLVISKAGPHGGYIPTSKA 71
Query: 71 DQI 73
I
Sbjct: 72 TDI 74
>gi|282925438|ref|ZP_06333093.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
aureus A9765]
gi|282592532|gb|EFB97543.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Staphylococcus
aureus A9765]
Length = 116
Score = 44.5 bits (104), Expect = 0.005, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M+L + + VL + H+ S +AE C++ + L ++ LV +++T+RG+
Sbjct: 1 MNL--EFNIAVHVLAFLTKHHSEKFNSSSLAELTCLNPVQLRRVTTQLVDLKMIDTIRGK 58
Query: 61 RGGVRLCRPADQITILDVVK--ATEESFFVAECFASHKIDCPLVGSCGLT 108
GG + +++ + K E+ C + + T
Sbjct: 59 DGGYLANDQSADVSLATLYKHFVLEKEHHTRLFTGDEGSHCQIARNIATT 108
>gi|169333849|ref|ZP_02861042.1| hypothetical protein ANASTE_00235 [Anaerofustis stercorihominis DSM
17244]
gi|169259414|gb|EDS73380.1| hypothetical protein ANASTE_00235 [Anaerofustis stercorihominis DSM
17244]
Length = 133
Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M +TD I+++MY I D +I + L ++ LV+A +++ +
Sbjct: 1 MKFDSKTDLAIKIIMYLFIEQDSK-SFEEIHRVIGTRKSILLSVIDRLVEAKVLKKGKDN 59
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
L + AD+I+I D++ + S V + + + + + + + +
Sbjct: 60 LT-YYLLKDADEISIYDLIILFDGSINVLDDYNNSRKNNLFIYEFYIDRFYNEIGKFLKI 118
Query: 121 VLTQYSIECLVRNRS 135
+ +I+ ++ N
Sbjct: 119 NIQNTTIKNMISNNH 133
>gi|295687580|ref|YP_003591273.1| BadM/Rrf2 family transcriptional regulator [Caulobacter segnis ATCC
21756]
gi|295429483|gb|ADG08655.1| transcriptional regulator, BadM/Rrf2 family [Caulobacter segnis
ATCC 21756]
Length = 140
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 25/117 (21%), Positives = 48/117 (41%), Gaps = 3/117 (2%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A D +++A + + + + ++ L KAG++ G GG L +PA+ IT+
Sbjct: 22 AFSADRAVASAELAASVPTNPVVVRRVTAMLGKAGLIGARAGANGGAWLLKPAEAITLDM 81
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLTQYSIECLVR 132
V+KA + CP+ + S + A A L + ++ L+
Sbjct: 82 VLKAVNGCAHL-GVAPKGVKGCPVGEKIPDAVRSAIEAADAAAAARLGEITVADLLA 137
>gi|332362426|gb|EGJ40226.1| Rrf2 family transcriptional regulator [Streptococcus sanguinis
SK1056]
Length = 96
Score = 44.1 bits (103), Expect = 0.007, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 9/86 (10%)
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATE---ESFFVAECFASHKIDCPLVGSCGLTSV 110
+ TV GG + + I++LDV A E +S + DCP+ + + +V
Sbjct: 1 MITVARGTGGAEIAKDLKDISLLDVYSAVECLGKSGQLFSFHDKPNPDCPIGKN--IHNV 58
Query: 111 LRK----ALNAFFDVLTQYSIECLVR 132
L A L Q S++ +V
Sbjct: 59 LDDRLAAIQAAMEAELAQTSLDEVVA 84
>gi|218663324|ref|ZP_03519254.1| transcriptional regulator, BadM/Rrf2 family protein [Rhizobium
etli IE4771]
Length = 183
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 3 LTKRTDYGIRVLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L + ++ + A + +AE + + +L K LQ L +A +V+T G
Sbjct: 4 LKSQVEWALHCCAILAGLPEGRYLSTKALAELHGLPKEYLSKALQSLSQASLVDTTLGPS 63
Query: 62 GGVRLCRPAD 71
GG RL RP+
Sbjct: 64 GGYRLARPSS 73
>gi|77165113|ref|YP_343638.1| ribonuclease BN [Nitrosococcus oceani ATCC 19707]
gi|254433289|ref|ZP_05046797.1| Ribonuclease BN-like family [Nitrosococcus oceani AFC27]
gi|76883427|gb|ABA58108.1| tRNA-processing RNAse BN [Nitrosococcus oceani ATCC 19707]
gi|207089622|gb|EDZ66893.1| Ribonuclease BN-like family [Nitrosococcus oceani AFC27]
Length = 447
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 44/116 (37%), Gaps = 11/116 (9%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITI---LDVVK 80
P + + + + + I++ L A +V G L + +TI LD+++
Sbjct: 338 PPTLESLVKQLGLPGYLIEDIIESLKSARLVTETGAEPPGYLLSKDPATVTIRKVLDIIR 397
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
EE F E L + + ++ K A + + +++ L+ +R
Sbjct: 398 RAEERQFPLESL--------LFKAPAVDGIMEKVEQALDQAMEKATLKDLIGDRQE 445
>gi|205372678|ref|ZP_03225489.1| transcriptional regulator [Bacillus coahuilensis m4-4]
Length = 89
Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats.
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 45 LQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGS 104
+ LVKA +++ GR GG L + + IT+ +V +A F +C +
Sbjct: 1 MTHLVKAKLIQAKEGRDGGYYLMKSPEDITLFEVYEAMRAEPFPRGFLDVQSKEC---FA 57
Query: 105 CGLTSVLRKALNAFF----DVLTQYSIECLV 131
L + L + ++ L+
Sbjct: 58 PSTQDALFGLRDEMEGWLIAGLKEKTLADLL 88
>gi|73668133|ref|YP_304148.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro]
gi|72395295|gb|AAZ69568.1| iron dependent repressor [Methanosarcina barkeri str. Fusaro]
Length = 221
Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats.
Identities = 22/122 (18%), Positives = 46/122 (37%), Gaps = 3/122 (2%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH+ + +Y + ++Y N P + QI+E +S + ++++ L +G+V
Sbjct: 1 MHIDRFEEY-LETILYLIRKNQGPAKTKQISEELNVSPPSVTEMIKKLHSSGLV--EYTP 57
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
GV L + I K F+ + + + +V L ++
Sbjct: 58 YQGVELTKQGTDQAIKIKRKHQVLETFLVDVLDFDRKEAHKEACELEHAVSDAVLEKIYE 117
Query: 121 VL 122
L
Sbjct: 118 FL 119
>gi|206576463|ref|YP_002239225.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
gi|206565521|gb|ACI07297.1| putative transcriptional regulator [Klebsiella pneumoniae 342]
Length = 137
Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+++ P ++ I++ +S +L +I + L +V + RG GG D IT+ +V
Sbjct: 21 LYDGSPVSLTAISKESKLSTSYLEQIFKKLRAGNLVISQRGPGGGYSP--RGDDITVTEV 78
Query: 79 VKAT 82
+ A
Sbjct: 79 ITAV 82
>gi|255023691|ref|ZP_05295677.1| hypothetical protein LmonocyFSL_10125 [Listeria monocytogenes FSL
J1-208]
Length = 35
Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats.
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 1 MHLTKRTDYGIRVLMYCAIH-NDYPNRISQIAE 32
M +T + YG+ + + A D P + IA+
Sbjct: 1 MKITTKGRYGLTITLELAKRIGDGPISLRSIAQ 33
>gi|148262717|ref|YP_001229423.1| putative ribonuclease BN [Geobacter uraniireducens Rf4]
gi|146396217|gb|ABQ24850.1| tRNA-processing RNAse BN [Geobacter uraniireducens Rf4]
Length = 449
Score = 42.6 bits (99), Expect = 0.017, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 11 IRVLMYCAI--HNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+ +L A H YP ++A+ I + ++L L + G + G +
Sbjct: 321 LSILRDIATAFHFGYPPLTSERLAKELDIPVKLVRELLTQLAENGYLVATAGDEPSYQPA 380
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSI 127
R DQIT+ +V+ + + + +L +A A LT ++
Sbjct: 381 RELDQITVNEVLLSLRDYGSHGRFTGEGN----------VQEILSRANGAAAATLTGMTL 430
Query: 128 ECLVRNRSSIKKI 140
+ LV + + +
Sbjct: 431 KELVASSPKKENV 443
>gi|227903951|ref|ZP_04021756.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC
4796]
gi|227868342|gb|EEJ75763.1| conserved hypothetical protein [Lactobacillus acidophilus ATCC
4796]
Length = 119
Score = 42.2 bits (98), Expect = 0.022, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 48/105 (45%), Gaps = 5/105 (4%)
Query: 34 CCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFA 93
+S+ +L KIL L ++ ++ G +L RP D+I++ DV+ A E + E
Sbjct: 1 MGVSDSYLKKILMMLKHNELITASASKKVGYQLARPIDEISLKDVLYALELNHNQIEFNH 60
Query: 94 S-----HKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRN 133
D + + L+ L++F+D L + + L+++
Sbjct: 61 LANNIFDDQDHVEESENKIINTLQAGLSSFYDELDELKLSDLLKD 105
>gi|292669455|ref|ZP_06602881.1| two component system response regulator [Selenomonas noxia ATCC
43541]
gi|292648908|gb|EFF66880.1| two component system response regulator [Selenomonas noxia ATCC
43541]
Length = 255
Score = 42.2 bits (98), Expect = 0.025, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 24/73 (32%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
Y +R + + H P ++AEA +S +L K+ + R R
Sbjct: 153 YLLRAMRHMEEHMAEPITAREVAEALGLSVSYLHKLFARCGTSFSAYLTDCRLRRARRML 212
Query: 69 PADQITILDVVKA 81
I V A
Sbjct: 213 RESDERIYTVAAA 225
>gi|170694906|ref|ZP_02886056.1| transcriptional regulator, GntR family [Burkholderia graminis
C4D1M]
gi|170140266|gb|EDT08444.1| transcriptional regulator, GntR family [Burkholderia graminis
C4D1M]
Length = 228
Score = 41.8 bits (97), Expect = 0.027, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 6 RTDYGIRVLMYC----AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
+ DY R L A+ Q+A + + + L L + G VET R
Sbjct: 19 KVDYAYRRLEEMIVTRALPPGALVSEVQLANEINVGRTPVREALARLKQFGFVETHPRRG 78
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAEC 91
V Q+ +L+V +A E A C
Sbjct: 79 TFVSTVDVRKQLELLEVRRALEPLVVAAAC 108
>gi|314935414|ref|ZP_07842767.1| putative HTH-type transcriptional regulator YffB [Staphylococcus
hominis subsp. hominis C80]
gi|313656749|gb|EFS20488.1| putative HTH-type transcriptional regulator YffB [Staphylococcus
hominis subsp. hominis C80]
Length = 107
Score = 41.8 bits (97), Expect = 0.028, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 34/95 (35%), Gaps = 8/95 (8%)
Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFAS-----HKIDCPLVGSCGL 107
+V + G+ GG L + IT DV A E + + + C +
Sbjct: 1 MVYSTTGKNGGFTLRKKLKDITFYDVFLAIEGRGNIFSSQHLLTNFLGEKEGHKAQQCNI 60
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFN 142
+ L + L+ +++ + I K++N
Sbjct: 61 SIALNHIEHTLISTLSNINLDDI---YQDIIKLYN 92
>gi|159041685|ref|YP_001540937.1| signal transduction protein [Caldivirga maquilingensis IC-167]
gi|157920520|gb|ABW01947.1| putative signal transduction protein with CBS domains [Caldivirga
maquilingensis IC-167]
Length = 295
Score = 41.1 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + P + +IA+ ++E + I+ L +V++ G GG + A
Sbjct: 11 VEALLELYNMHKRPIKSKEIADKLGMNEGTIRNIMVALKAMNLVDSKTGPYGGFIPSQKA 70
Query: 71 DQI 73
+
Sbjct: 71 VEF 73
>gi|169838483|ref|ZP_02871671.1| hypothetical protein cdivTM_15506 [candidate division TM7
single-cell isolate TM7a]
Length = 90
Score = 41.1 bits (95), Expect = 0.052, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 6/82 (7%)
Query: 58 RGRRGGVRLCRPADQITILDVVKATEESFFVA------ECFASHKIDCPLVGSCGLTSVL 111
+G GG L R Q+T+ DVV A E E + + +G + V
Sbjct: 5 QGAGGGFALAREMKQVTLHDVVLAIEGEAPFFQPQGIIERVFATRRRQVEIGMNMIEKVF 64
Query: 112 RKALNAFFDVLTQYSIECLVRN 133
+A + D L ++E + +
Sbjct: 65 SEAQQQWSDYLKTVTLEDIAKE 86
>gi|218508987|ref|ZP_03506865.1| putative transcriptional regulator protein [Rhizobium etli Brasil
5]
Length = 131
Score = 41.1 bits (95), Expect = 0.054, Method: Composition-based stats.
Identities = 8/54 (14%), Positives = 17/54 (31%), Gaps = 4/54 (7%)
Query: 83 EESFFVAECFA----SHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+ C + DC +C + + +A +L ++E V
Sbjct: 1 DGPLAPIRCASRTAYEACDDCADPETCQVRRSMTDVRDAIAAILDNMTLEQFVA 54
>gi|84617327|emb|CAI94687.1| hypothetical protein [Streptomyces achromogenes subsp. rubradiris]
Length = 331
Score = 40.7 bits (94), Expect = 0.071, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 2/85 (2%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
V+ H D +IA + + L G V T G + A
Sbjct: 36 HVMTDVFEHPDTSVT--EIANRTGFPASHVETSVATLRDRGAVTTAAAPDGQTVVRAAAR 93
Query: 72 QITILDVVKATEESFFVAECFASHK 96
+ +E A
Sbjct: 94 HRSAGRAAARIDEQLAAAAGIQDPG 118
>gi|116695780|ref|YP_841356.1| transcriptional regulator [Ralstonia eutropha H16]
gi|113530279|emb|CAJ96626.1| transcriptional regulator [Ralstonia eutropha H16]
Length = 252
Score = 40.3 bits (93), Expect = 0.089, Method: Composition-based stats.
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 21/101 (20%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
N P ++++AEA I + I+ L+ G + ++ R I DV +
Sbjct: 22 NQRPLSLTELAEAIDIPKSTCHAIVSTLMARGYLYSLTRPRALY------PTRRIYDVAR 75
Query: 81 ATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
E E T VL + +A +
Sbjct: 76 DITEKDPFVE---------------RATPVLERLRDATRET 101
>gi|329113298|ref|ZP_08242080.1| Hypothetical protein APO_0063 [Acetobacter pomorum DM001]
gi|326697376|gb|EGE49035.1| Hypothetical protein APO_0063 [Acetobacter pomorum DM001]
Length = 189
Score = 40.3 bits (93), Expect = 0.090, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---RPADQITILDV-V 79
+IAEA I + +I++ LVK G + + R + G+R R + +V
Sbjct: 105 MLTREEIAEAVGIKADHVSEIMRELVKFGAIFSEREKVAGMRGPGLVRYYMNRHVAEVGS 164
Query: 80 KATEESFFVA 89
+AT+E +
Sbjct: 165 RATQEELALI 174
>gi|33865788|ref|NP_897347.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
gi|33632958|emb|CAE07769.1| diaminopimelate epimerase [Synechococcus sp. WH 8102]
Length = 364
Score = 40.3 bits (93), Expect = 0.098, Method: Composition-based stats.
Identities = 11/88 (12%), Positives = 22/88 (25%), Gaps = 9/88 (10%)
Query: 50 KAGIVETVRGRRGGVRLCRPADQITILD--VVKATEESFF---VAECFASHKIDCPLVGS 104
+ G V D + + + V + +C C +
Sbjct: 262 RHGAVLMTGPAVAVFDGVLSPDLMPVGESLVAEPLTPDVADNAPFDCSRDCVDSCQQPDN 321
Query: 105 CGLTSVLRKALNAFFDVLTQYSIECLVR 132
C L A L S++ ++
Sbjct: 322 C-LRDA---AQQQVQAFLNSTSLDAMLN 345
>gi|254387210|ref|ZP_05002476.1| IclR-family transcriptional regulator [Streptomyces sp. Mg1]
gi|194346021|gb|EDX26987.1| IclR-family transcriptional regulator [Streptomyces sp. Mg1]
Length = 252
Score = 40.3 bits (93), Expect = 0.099, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
Y +RVL A H +QIA + + L +L L + G V
Sbjct: 16 YALRVLETIARHTGG-VTNAQIARETGLPAVHLTPMLLMLRREGYV 60
>gi|269960647|ref|ZP_06175019.1| hypothetical protein VME_14030 [Vibrio harveyi 1DA3]
gi|269834724|gb|EEZ88811.1| hypothetical protein VME_14030 [Vibrio harveyi 1DA3]
Length = 336
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
+L Y A H++ P I IAE + + + Q ++ I R R
Sbjct: 208 MLEYIATHHNQPITIKDIAEHIGLHTNYAMNVFQRTMQMTIKQYITAMRINHARALLSDT 267
Query: 72 QITILDVVKAT 82
TILD+
Sbjct: 268 DRTILDIALTV 278
>gi|253576977|ref|ZP_04854300.1| ArsR family transcriptional regulator [Paenibacillus sp. oral taxon
786 str. D14]
gi|251843587|gb|EES71612.1| ArsR family transcriptional regulator [Paenibacillus sp. oral taxon
786 str. D14]
Length = 302
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ +L A + P I ++A A +S + ++ L + G+V T +
Sbjct: 22 LHILRLLA---NRPMNIKELAAAVGLSSAIMTMHVRKLSECGLVATHMAPGKSGLQKICS 78
Query: 71 DQITILDV----VKATEESFFVAECFASHKIDCPLVGSCGL 107
++ ++ A E + E H D + +CG+
Sbjct: 79 LAVSGAEIQFPAQAAAERKSYRVEIPVGHYSDFHIEPTCGI 119
>gi|153834146|ref|ZP_01986813.1| melibiose operon regulatory protein [Vibrio harveyi HY01]
gi|148869516|gb|EDL68514.1| melibiose operon regulatory protein [Vibrio harveyi HY01]
Length = 332
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
+L Y A H++ P I IAE + + + Q ++ I R R
Sbjct: 204 MLEYIATHHNQPITIKDIAEHIGLHTNYAMNVFQRTMQMTIKQYITAMRINHARALLSDT 263
Query: 72 QITILDVVKAT 82
TILD+
Sbjct: 264 DRTILDIALTV 274
>gi|226349483|ref|YP_002776597.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
B4]
gi|226245398|dbj|BAH55745.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
B4]
Length = 289
Score = 39.9 bits (92), Expect = 0.11, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L A + ++AEA I + + ++ L G V + R V P+
Sbjct: 41 VRLLHQVASRPAG-ITVGELAEALGIGQPTISHHVRKLADVGFVSVHKDRTSTVVTVNPS 99
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+ A C D +
Sbjct: 100 CCTGLPHAADAVMGVLTPRPCCPDDLPD-DVTVRPMTEQDWDDVRR 144
>gi|120402033|ref|YP_951862.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1]
gi|119954851|gb|ABM11856.1| transcriptional regulator, IclR family [Mycobacterium vanbaalenii
PYR-1]
Length = 266
Score = 39.9 bits (92), Expect = 0.12, Method: Composition-based stats.
Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 5 KRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
++ +R +L Y A D P R+ +I++A + +L+ LV G V +
Sbjct: 9 RKVKSAVRTVELLEYLAARPDDPARLREISDALDMPRSSAHALLRTLVCQGWVRSDP 65
>gi|118472327|ref|YP_890339.1| IclR-family protein transcriptional regulator [Mycobacterium
smegmatis str. MC2 155]
gi|118173614|gb|ABK74510.1| IclR-family protein transcriptional regulator [Mycobacterium
smegmatis str. MC2 155]
Length = 266
Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 5 KRTDYGIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
++ +R +L Y A D P RI +I A + +L+ LV G V +
Sbjct: 10 RKVKSAVRTVELLEYLAARPDRPTRIREICAALDMPRSSAHALLRTLVAQGWVRSDEA 67
>gi|83644372|ref|YP_432807.1| ribonuclease BN-like family protein [Hahella chejuensis KCTC 2396]
gi|83632415|gb|ABC28382.1| ribonuclease BN-like family protein [Hahella chejuensis KCTC 2396]
Length = 455
Score = 39.9 bits (92), Expect = 0.13, Method: Composition-based stats.
Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 8/118 (6%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
IS + + + + +I+ L+K G++ + + RP D+IT+ +++
Sbjct: 334 QQGGGESISDLEDTLSVGPETIQRIIDKLLKKGVLAIMGDEADSLIPARPLDRITLAELM 393
Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSI 137
H + L + ++ + A L Q ++ VR ++
Sbjct: 394 HVLRSP--------EHSLPASLYSDKSVDAIAKGVTAAMEASLGQMTLAAWVRGEETV 443
>gi|159109685|ref|XP_001705106.1| Hypothetical protein GL50803_13995 [Giardia lamblia ATCC 50803]
gi|157433185|gb|EDO77432.1| hypothetical protein GL50803_13995 [Giardia lamblia ATCC 50803]
Length = 738
Score = 39.5 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
I++I++ + F+ +I + L G+VE+ +G G ++ + ++ +++K
Sbjct: 11 LLTINEISQRQDTTMRFVERITKQLGHLKGVVESSQGPFPGSKMTKEELATSLGEILKYI 70
Query: 83 EESF 86
E +
Sbjct: 71 EANL 74
>gi|149187376|ref|ZP_01865674.1| melibiose operon regulatory protein [Vibrio shilonii AK1]
gi|148838912|gb|EDL55851.1| melibiose operon regulatory protein [Vibrio shilonii AK1]
Length = 334
Score = 39.5 bits (91), Expect = 0.14, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
+L Y A H++ P I IAE + + + Q ++ I R R
Sbjct: 204 MLEYIATHHNQPLTIKDIAEHIGLHTNYAMNVFQRTMQMTIKQYITAMRINHARALLSDT 263
Query: 72 QITILDVVKAT 82
TILD+
Sbjct: 264 DRTILDISLTV 274
>gi|75761769|ref|ZP_00741707.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
gi|74490754|gb|EAO54032.1| Rrf2 family protein [Bacillus thuringiensis serovar israelensis
ATCC 35646]
Length = 116
Score = 39.5 bits (91), Expect = 0.16, Method: Composition-based stats.
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 7/108 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK--AGIVETVR 58
M ++ R G+ +L AI + IA + + + + +I + +++ AG+V+
Sbjct: 9 MGISSRFTVGVHMLTLLAIDRNSRCTSEWIAGSVNTNPVVIRRITRHMLQAAAGLVDVQA 68
Query: 59 GRRGGVRL-----CRPADQITILDVVKATEESFFVAECFASHKIDCPL 101
G+ G L + + I V + S ++CP
Sbjct: 69 GKGGHAHLLEHFRSKLHYLMYIKPVASCQRRTAHFPSIAKSPTLECPR 116
>gi|308160144|gb|EFO62648.1| Hypothetical protein GLP15_4766 [Giardia lamblia P15]
Length = 742
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
+ I++I++ + F+ +I + L G+VE+ +G G ++ + ++ +++K
Sbjct: 11 LSTINEISQRQDTTMRFVERITKQLGHLKGVVESSQGPFPGSKMTKEELATSLGEILKYI 70
Query: 83 EESF 86
E +
Sbjct: 71 EANL 74
>gi|184155927|ref|YP_001844267.1| hypothetical protein LAF_1451 [Lactobacillus fermentum IFO 3956]
gi|260662818|ref|ZP_05863712.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
gi|183227271|dbj|BAG27787.1| hypothetical protein [Lactobacillus fermentum IFO 3956]
gi|260552899|gb|EEX25898.1| transcriptional regulator [Lactobacillus fermentum 28-3-CHN]
Length = 108
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
Query: 41 LFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCP 100
+ K++ L A I+ + R R DQIT+LDV +AT C
Sbjct: 1 MRKMIAQLRAADILAARQNNRYDN-FARDLDQITVLDVYRATAPKNPFLVPDQETSGQCS 59
Query: 101 LVGSCG--LTSVLRKALNAFFDVLTQYSIECLVRN 133
+ + +T + L Q +++ LV
Sbjct: 60 VGVAFPEVITKHFAEVQVGIEQRLDQITVQQLVDE 94
>gi|70607246|ref|YP_256116.1| CBS domain-containing protein [Sulfolobus acidocaldarius DSM 639]
gi|68567894|gb|AAY80823.1| CBS domain protein [Sulfolobus acidocaldarius DSM 639]
Length = 300
Score = 39.5 bits (91), Expect = 0.17, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ N + +IA+ E + ++ L G++E+ G GG A
Sbjct: 12 LLALIDIYNKNKRMVKSKEIADMIGKDEGTVRNVILSLKVLGLIESKPGPSGGYVPTLKA 71
Query: 71 DQ 72
+
Sbjct: 72 YE 73
>gi|239813179|ref|YP_002942089.1| transcriptional regulator, IclR family [Variovorax paradoxus
S110]
gi|239799756|gb|ACS16823.1| transcriptional regulator, IclR family [Variovorax paradoxus
S110]
Length = 244
Score = 39.1 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ D +RVL A + +++AEA + + L++ + L + G V GR
Sbjct: 8 SAHNDRALRVLSVLA-QSKSAMSAAELAEATGLVKSTLYRQIAVLRRWGFVMETDGRYSP 66
>gi|254519862|ref|ZP_05131918.1| signal-transduction protein [Clostridium sp. 7_2_43FAA]
gi|226913611|gb|EEH98812.1| signal-transduction protein [Clostridium sp. 7_2_43FAA]
Length = 212
Score = 39.1 bits (90), Expect = 0.18, Method: Composition-based stats.
Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L++R + IR++ P +AE ++ L L L GI++
Sbjct: 1 MKLSQRQEEIIRIV-----KEGQPVTSEALAEHLGVTRAALRADLAILTMIGILDA--RP 53
Query: 61 RGGVRLCRPADQITILD 77
+ G A IL+
Sbjct: 54 KVGYVYLGEAQNTRILE 70
>gi|124027017|ref|YP_001012337.1| transcriptional regulator [Hyperthermus butylicus DSM 5456]
gi|123977711|gb|ABM79992.1| predicted transcriptional regulator [Hyperthermus butylicus DSM
5456]
Length = 296
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 29/87 (33%), Gaps = 5/87 (5%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT + L+ + +IAE E + I+ L G+VE+ G
Sbjct: 5 KLTMSQREVLEALIRLYDERRRLIKSKEIAELVNKDEGTVRNIILSLKSLGLVESKTGPT 64
Query: 62 GGVRLCRPADQITILDVVKATEESFFV 88
GG A ++++ V
Sbjct: 65 GGYMPTLKA-----YEIIRGIPVQLPV 86
>gi|284165543|ref|YP_003403822.1| hypothetical protein Htur_2269 [Haloterrigena turkmenica DSM 5511]
gi|284015198|gb|ADB61149.1| Protein of unknown function DUF293 [Haloterrigena turkmenica DSM
5511]
Length = 177
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 46/135 (34%), Gaps = 6/135 (4%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R L ++ + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LRALTNLHKESEAAIKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTASA 73
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQYSI 127
+ L++ + + + E D + S L +A + +
Sbjct: 74 YEA--LEIQQMDDPASVPIEHEGEPIDDVIVEEIDLSSVHHPELCRAEIHMQGSMGEIHE 131
Query: 128 ECLVR-NRSSIKKIF 141
+ V + + K+
Sbjct: 132 DDAVTVGPTPLSKLL 146
>gi|88808555|ref|ZP_01124065.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
gi|88787543|gb|EAR18700.1| diaminopimelate epimerase [Synechococcus sp. WH 7805]
Length = 368
Score = 39.1 bits (90), Expect = 0.19, Method: Composition-based stats.
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Query: 53 IVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
V G + + ++ A + +C K C C +
Sbjct: 273 AVAVFDGVMNPDLMPGGRSEEMAAELKPAVASTPPALDCANDCKEGCRQPKRC----LRE 328
Query: 113 KALNAFFDVLTQYSIECLVR 132
+A L S++ ++
Sbjct: 329 EAQAKVQAFLASTSLDSMIN 348
>gi|88800929|ref|ZP_01116481.1| hypothetical protein MED297_04644 [Reinekea sp. MED297]
gi|88776304|gb|EAR07527.1| hypothetical protein MED297_04644 [Reinekea sp. MED297]
Length = 248
Score = 39.1 bits (90), Expect = 0.21, Method: Composition-based stats.
Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+Y A+ P I IA+ I+ ++L+ + + G+V + +
Sbjct: 19 IYLALLESGPASIRDIADRAGINRGTTHELLKRMQQKGVV-SYFPKGKRRHFSAEP 73
>gi|218295632|ref|ZP_03496428.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23]
gi|218243791|gb|EED10318.1| transcriptional regulator, TrmB [Thermus aquaticus Y51MC23]
Length = 844
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+RVL Y A H + ++A S + +L LV+ G GR R
Sbjct: 13 ALRVLAYLAEHPEG-VEAKEVARHLGRSLSAAYALLNSLVEEGFAVKGEGRYTLARARPA 71
Query: 70 AD 71
Sbjct: 72 PK 73
>gi|153207086|ref|ZP_01945883.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165918305|ref|ZP_02218391.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
gi|212219336|ref|YP_002306123.1| ATPase [Coxiella burnetii CbuK_Q154]
gi|120576927|gb|EAX33551.1| conserved hypothetical protein [Coxiella burnetii 'MSU Goat Q177']
gi|165917955|gb|EDR36559.1| conserved hypothetical protein [Coxiella burnetii RSA 334]
gi|212013598|gb|ACJ20978.1| ATPase [Coxiella burnetii CbuK_Q154]
Length = 401
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L Y A + IA+ ++ +F L L G+++ + GG + R
Sbjct: 242 RILSYLATIPPGEVNTNNIAKNLNVAHQTVFNYLTILESVGLIQMIYPFEGGNQYLRKPQ 301
Query: 72 QITI 75
+I +
Sbjct: 302 KIFL 305
>gi|161829850|ref|YP_001597462.1| hypothetical protein COXBURSA331_A1823 [Coxiella burnetii RSA 331]
gi|161761717|gb|ABX77359.1| conserved hypothetical protein [Coxiella burnetii RSA 331]
Length = 401
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L Y A + IA+ ++ +F L L G+++ + GG + R
Sbjct: 242 RILSYLATIPPGEVNTNNIAKNLNVAHQTVFNYLTILESVGLIQMIYPFEGGNQYLRKPQ 301
Query: 72 QITI 75
+I +
Sbjct: 302 KIFL 305
>gi|154705908|ref|YP_001423781.1| ATPase [Coxiella burnetii Dugway 5J108-111]
gi|154355194|gb|ABS76656.1| ATPase [Coxiella burnetii Dugway 5J108-111]
Length = 401
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L Y A + IA+ ++ +F L L G+++ + GG + R
Sbjct: 242 RILSYLATIPPGEVNTNNIAKNLNVAHQTVFNYLTILESVGLIQMIYPFEGGNQYLRKPQ 301
Query: 72 QITI 75
+I +
Sbjct: 302 KIFL 305
>gi|29654928|ref|NP_820620.1| ATPase [Coxiella burnetii RSA 493]
gi|29542197|gb|AAO91134.1| ATPase [Coxiella burnetii RSA 493]
Length = 401
Score = 39.1 bits (90), Expect = 0.23, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 27/64 (42%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L Y A + IA+ ++ +F L L G+++ + GG + R
Sbjct: 242 RILSYLATIPPGEVNTNNIAKNLNVAHQTVFNYLTILESVGLIQMIYPFEGGNQYLRKPQ 301
Query: 72 QITI 75
+I +
Sbjct: 302 KIFL 305
>gi|297566010|ref|YP_003684982.1| IclR family transcriptional regulator [Meiothermus silvanus DSM
9946]
gi|296850459|gb|ADH63474.1| transcriptional regulator, IclR family [Meiothermus silvanus DSM
9946]
Length = 835
Score = 38.7 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 2/73 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ + +RVL Y A H + ++A S + +L LV G E
Sbjct: 6 RLST-VEAALRVLAYLAAHPEG-LEAREVARMLGKSLSTAYALLASLVAEGFAEREGSSY 63
Query: 62 GGVRLCRPADQIT 74
+ T
Sbjct: 64 RVSKAALAPAHST 76
>gi|315427936|dbj|BAJ49527.1| transcriptional regulator, TrmB-like [Candidatus Caldiarchaeum
subterraneum]
Length = 263
Score = 38.7 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TDY +R Y A+ P S+I++ I ++++L L + G +ET GR
Sbjct: 23 TDYEVRA--YIALVEHGPMTASEISDLKMIPYSKIYEVLGSLEEKGFIETQSGRPARYVP 80
>gi|90410043|ref|ZP_01218060.1| melibiose operon regulator [Photobacterium profundum 3TCK]
gi|90329396|gb|EAS45653.1| melibiose operon regulator [Photobacterium profundum 3TCK]
Length = 335
Score = 38.7 bits (89), Expect = 0.23, Method: Composition-based stats.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 3 LTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
L+K + Y ++L Y A H+D P + QIA+ + + I Q +++
Sbjct: 193 LSKHSQFYVSQMLEYIASHHDTPLTVKQIADHVGLHANYAMGIFQRMMQ 241
>gi|84386574|ref|ZP_00989601.1| melibiose operon regulator [Vibrio splendidus 12B01]
gi|84378679|gb|EAP95535.1| melibiose operon regulator [Vibrio splendidus 12B01]
Length = 339
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRGGVRLCRPAD 71
+L Y A H++ P + IAE + + + Q ++ I R R
Sbjct: 204 MLEYIATHHNQPLTVKDIAEHIGLHANYAMNVFQRTMQMTIKQYITAMRINHARALLSDT 263
Query: 72 QITILDVVKAT 82
TILD+
Sbjct: 264 DRTILDISLTV 274
>gi|189464716|ref|ZP_03013501.1| hypothetical protein BACINT_01060 [Bacteroides intestinalis DSM
17393]
gi|189436990|gb|EDV05975.1| hypothetical protein BACINT_01060 [Bacteroides intestinalis DSM
17393]
Length = 282
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+++Y A +++ P +IS I A + + I + G L R
Sbjct: 183 RIVVYIAHNHNRPIKISDIGRAVGLHPDYANAIFKKAF-------------GCTLSRYVA 229
Query: 72 QITILDVVKAT 82
+ I V +
Sbjct: 230 EERIGQVKRKL 240
>gi|120611014|ref|YP_970692.1| hypothetical protein Aave_2343 [Acidovorax citrulli AAC00-1]
gi|120589478|gb|ABM32918.1| hypothetical protein Aave_2343 [Acidovorax citrulli AAC00-1]
Length = 379
Score = 38.7 bits (89), Expect = 0.24, Method: Composition-based stats.
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 3/79 (3%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L A H P R+ +AE ++ + + L +AG V +RG G R P
Sbjct: 151 LALIAQH--QPMRLEHLAELTGRGRVYTRQRVHKLRRAGKVN-IRGVDGSWRYVLPDYVR 207
Query: 74 TILDVVKATEESFFVAECF 92
T D+ + C
Sbjct: 208 TPADIEQEILLRCEPVGCD 226
>gi|315426311|dbj|BAJ47952.1| transcriptional regulator, TrmB-like [Candidatus Caldiarchaeum
subterraneum]
Length = 263
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TDY +R Y A+ P S+I++ I ++++L L + G + T GR
Sbjct: 23 TDYEVRA--YIALVEHGPMTASEISDLKMIPYSKIYEVLGSLEEKGFIVTQSGRPARYVP 80
>gi|300697272|ref|YP_003747933.1| MarR family transcriptional regulator [Ralstonia solanacearum
CFBP2957]
gi|299073996|emb|CBJ53533.1| putative transcriptional regulatory protein, MarR [Ralstonia
solanacearum CFBP2957]
Length = 158
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 20/113 (17%), Positives = 30/113 (26%), Gaps = 7/113 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L+ H Q+AE + L + L+ L + G + R
Sbjct: 37 RILLALHDHEGGGLAQKQLAERLQMDPGALTRQLKVLEQLGWIARATDVRDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ VV+ D L L AL A L
Sbjct: 97 DAGLAVVVECMPRRVAFLNATLDGLPD-------DLVHALSDALAAIETRLAD 142
>gi|255017472|ref|ZP_05289598.1| hypothetical protein LmonF_06313 [Listeria monocytogenes FSL
F2-515]
Length = 55
Score = 38.7 bits (89), Expect = 0.25, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
+ + NA DVL Q ++ L+++
Sbjct: 16 RELWTRMRNAVRDVLDQTTLADLLKH 41
>gi|119719850|ref|YP_920345.1| signal transduction protein [Thermofilum pendens Hrk 5]
gi|119524970|gb|ABL78342.1| putative signal transduction protein with CBS domains
[Thermofilum pendens Hrk 5]
Length = 307
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ ++ P S+IAEA S+ + ++ L G+VE G GG
Sbjct: 11 LVAVVNAYEATGRPVTSSEIAEAVGKSDGTVRNVISALKAMGLVEAKTGPGGGYVP 66
>gi|332652740|ref|ZP_08418485.1| two-component response regulator [Ruminococcaceae bacterium D16]
gi|332517886|gb|EGJ47489.1| two-component response regulator [Ruminococcaceae bacterium D16]
Length = 246
Score = 38.7 bits (89), Expect = 0.27, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 6 RTDYGIRVLMYCAIHNDYP-NRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
++ Y ++ + Y H D P +++IA++ ISE L + + R
Sbjct: 140 KSKYVLQAMSYIGEHYDNPNITVAEIAQSIGISEGHLSHTFKK-ETDYTLLNYLTRYRIH 198
Query: 65 RLCRPADQITI 75
+ +
Sbjct: 199 KAMELLRDCRV 209
>gi|284172627|ref|YP_003406009.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM 5511]
gi|284017387|gb|ADB63336.1| transcriptional regulator, TrmB [Haloterrigena turkmenica DSM 5511]
Length = 177
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 5/116 (4%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R L ++ + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LRALTNLHKKSEDTVKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTVTA 73
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLT 123
+ L++ + E + E H D + S L +A +
Sbjct: 74 YET--LEIQQMDEPATVPLEHEGKHLEDIIIEEIDLSSVHHPELCRAEVHIQGSID 127
>gi|319948754|ref|ZP_08022874.1| DtxR family iron (metal) dependent repressor [Dietzia cinnamea P4]
gi|319437587|gb|EFV92587.1| DtxR family iron (metal) dependent repressor [Dietzia cinnamea P4]
Length = 228
Score = 38.7 bits (89), Expect = 0.29, Method: Composition-based stats.
Identities = 17/115 (14%), Positives = 31/115 (26%), Gaps = 6/115 (5%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L P S +AE S + + ++ LV + V L
Sbjct: 22 AVHAL----GAGGDPVTSSALAERLGASPSSVSEGVRKLVAMDL--AEHRPYAPVVLTEA 75
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ V + F+A C + V + ++A L
Sbjct: 76 GRSFAVAMVRRHRIIETFLARCLDYPWDEVHAEADALEHVVSDRFVDALDVFLDH 130
>gi|282932547|ref|ZP_06337970.1| AraC-type DNA-binding protein [Lactobacillus jensenii 208-1]
gi|281303327|gb|EFA95506.1| AraC-type DNA-binding protein [Lactobacillus jensenii 208-1]
Length = 289
Score = 38.4 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 4 TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
+K+ Y + ++ Y A H+ +S++A + +L ++ Q L K +
Sbjct: 175 SKKVKYASKDTQAGALMSYIASHHGQ-VTLSEMANEFGYQKNYLSRLCQKLFKQDFIH 231
>gi|227513905|ref|ZP_03943954.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
gi|227087712|gb|EEI23024.1| conserved hypothetical protein [Lactobacillus fermentum ATCC 14931]
Length = 105
Score = 38.4 bits (88), Expect = 0.31, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG--LTSVLRKALNAFFDVLT 123
R DQIT+LDV +AT C + + +T + L
Sbjct: 22 FARDLDQITVLDVYRATAPKNPFLVPDQETSGQCSVGVAFPEVITKHFAEVQVGIEQRLD 81
Query: 124 QYSIECLVRN 133
Q +++ LV
Sbjct: 82 QITVQQLVDE 91
>gi|257055826|ref|YP_003133658.1| putative transcriptional regulator [Saccharomonospora viridis DSM
43017]
gi|256585698|gb|ACU96831.1| predicted transcriptional regulator [Saccharomonospora viridis
DSM 43017]
Length = 211
Score = 38.4 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR--LCR 68
+R+L A H P +++AE S L+ L K G V + G +
Sbjct: 28 LRLLETLAEH--GPATATELAERVGESPSNCSWHLRQLGKHGFVASGTPSGRGRQRPWRL 85
Query: 69 PADQITILDVV 79
+I + +V
Sbjct: 86 VPRRIQLDEVT 96
>gi|294496519|ref|YP_003543012.1| signal transduction protein with CBS domains [Methanohalophilus
mahii DSM 5219]
gi|292667518|gb|ADE37367.1| putative signal transduction protein with CBS domains
[Methanohalophilus mahii DSM 5219]
Length = 291
Score = 38.4 bits (88), Expect = 0.32, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ D + +IA+ + + +Q L G+VE V G +GG R A
Sbjct: 11 LIALINLQRQKDSAVKGEEIADLIDRNPGTVRNQMQSLKMLGLVEGVPGPKGGYRATGTA 70
Query: 71 DQ 72
+
Sbjct: 71 YE 72
>gi|241763927|ref|ZP_04761970.1| transcriptional regulator, IclR family [Acidovorax delafieldii
2AN]
gi|241366822|gb|EER61254.1| transcriptional regulator, IclR family [Acidovorax delafieldii
2AN]
Length = 258
Score = 38.4 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ VL A H P +++ EA ++ L++ L L G V G
Sbjct: 26 LHVLAVLAQH-GQPMSAAELVEATGLARSTLYRQLARLKLWGFVLESSGHYAP 77
>gi|227828274|ref|YP_002830054.1| signal transduction protein with CBS domains [Sulfolobus
islandicus M.14.25]
gi|227831032|ref|YP_002832812.1| Protein of unknown function DUF293 [Sulfolobus islandicus
L.S.2.15]
gi|229579913|ref|YP_002838312.1| signal transduction protein with CBS domains [Sulfolobus
islandicus Y.G.57.14]
gi|229581426|ref|YP_002839825.1| putative signal-transduction protein with CBS domains [Sulfolobus
islandicus Y.N.15.51]
gi|229585503|ref|YP_002844005.1| signal transduction protein with CBS domains [Sulfolobus
islandicus M.16.27]
gi|238620466|ref|YP_002915292.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus M.16.4]
gi|284998527|ref|YP_003420295.1| Protein of unknown function DUF293 [Sulfolobus islandicus
L.D.8.5]
gi|227457480|gb|ACP36167.1| Protein of unknown function DUF293 [Sulfolobus islandicus
L.S.2.15]
gi|227460070|gb|ACP38756.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus M.14.25]
gi|228010628|gb|ACP46390.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus Y.G.57.14]
gi|228012142|gb|ACP47903.1| putative signal-transduction protein with CBS domains [Sulfolobus
islandicus Y.N.15.51]
gi|228020553|gb|ACP55960.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus M.16.27]
gi|238381536|gb|ACR42624.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus M.16.4]
gi|284446423|gb|ADB87925.1| Protein of unknown function DUF293 [Sulfolobus islandicus
L.D.8.5]
gi|323475344|gb|ADX85950.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus REY15A]
gi|323478069|gb|ADX83307.1| putative signal transduction protein with CBS domains [Sulfolobus
islandicus HVE10/4]
Length = 300
Score = 38.4 bits (88), Expect = 0.33, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L + ++A+ E + I+ L G+VE+ G GG A
Sbjct: 12 LLALTDLYNRQKRMIKSKEVADIIGKDEGTVRNIILSLKVLGLVESKPGPNGGYMPTLKA 71
Query: 71 DQI 73
+I
Sbjct: 72 YEI 74
>gi|293605111|ref|ZP_06687503.1| IclR family transcriptional regulator [Achromobacter piechaudii
ATCC 43553]
gi|292816514|gb|EFF75603.1| IclR family transcriptional regulator [Achromobacter piechaudii
ATCC 43553]
Length = 246
Score = 38.4 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ VL A H D P I+ +AE +++ L++ + L + G V G G
Sbjct: 14 LYVLATLARH-DGPLTIAALAEKTGLAQSTLYRQVALLKRWGFVAEHEGEYGP 65
>gi|212212025|ref|YP_002302961.1| ATPase [Coxiella burnetii CbuG_Q212]
gi|212010435|gb|ACJ17816.1| ATPase [Coxiella burnetii CbuG_Q212]
Length = 401
Score = 38.4 bits (88), Expect = 0.34, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L Y A + IA+ ++ +F L L G+++ + G + R
Sbjct: 242 RILSYLATIPPGEVNTNNIAKNLNVAHQTVFNYLTILESVGLIQMIYPFESGNQYLRKPQ 301
Query: 72 QITI 75
+I +
Sbjct: 302 KIFL 305
>gi|15897070|ref|NP_341675.1| hypothetical protein SSO0110 [Sulfolobus solfataricus P2]
gi|284173415|ref|ZP_06387384.1| hypothetical protein Ssol98_01997 [Sulfolobus solfataricus 98/2]
gi|1707784|emb|CAA69582.1| orf c04012 [Sulfolobus solfataricus P2]
gi|13813241|gb|AAK40465.1| Conserved hypothetical protein [Sulfolobus solfataricus P2]
gi|261601725|gb|ACX91328.1| putative signal transduction protein with CBS domains [Sulfolobus
solfataricus 98/2]
Length = 300
Score = 38.4 bits (88), Expect = 0.35, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L + ++A+ E + I+ L G+VE+ G GG A
Sbjct: 12 LLALTDLYNRQKRMIKSKEVADIIGKDEGTVRNIILSLKVLGLVESKPGPNGGYMPTLKA 71
Query: 71 DQI 73
+I
Sbjct: 72 YEI 74
>gi|294054988|ref|YP_003548646.1| hypothetical protein Caka_1457 [Coraliomargarita akajimensis DSM
45221]
gi|293614321|gb|ADE54476.1| conserved hypothetical protein [Coraliomargarita akajimensis DSM
45221]
Length = 94
Score = 38.4 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 34/79 (43%), Gaps = 3/79 (3%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPA 70
VL+ A + + P + ++A A I+E + +I+ L AG + GR+ R+
Sbjct: 15 HVLICLARNPEQP--LREVALAVGITERAVQRIVAELEVAGYLSHERIGRQNSYRIHGAL 72
Query: 71 DQITILDVVKATEESFFVA 89
+ L+ + + V
Sbjct: 73 ELRHPLEAHRTIGDLLDVV 91
>gi|83747309|ref|ZP_00944350.1| Transcriptional regulator, MarR family [Ralstonia solanacearum
UW551]
gi|207739101|ref|YP_002257494.1| hypothetical protein RSIPO_03801 [Ralstonia solanacearum IPO1609]
gi|83726009|gb|EAP73146.1| Transcriptional regulator, MarR family [Ralstonia solanacearum
UW551]
gi|206592474|emb|CAQ59380.1| hypothetical protein RSIPO_03801 [Ralstonia solanacearum IPO1609]
Length = 158
Score = 38.4 bits (88), Expect = 0.37, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L+ H Q+AE + L + L+ L + G + R
Sbjct: 37 RILLALHDHEGGGLAQKQLAERLQMDPGALTRQLKVLEQLGWIARATDVRDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ V++ D L L +AL A L
Sbjct: 97 DAGLAVVLECMPRRVAFLNATLDGLPD-------ELVHALSEALAAIETGLAD 142
>gi|317406130|gb|EFV86387.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans
C54]
Length = 245
Score = 38.4 bits (88), Expect = 0.38, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ VL A H D P I+ +AE +++ L++ + L + G V G G
Sbjct: 13 LYVLATLARH-DGPLSIAALAEKTGLAQSTLYRQVALLKRWGFVAEHEGEYGP 64
>gi|332970588|gb|EGK09574.1| transcriptional regulator [Desmospora sp. 8437]
Length = 233
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
+ +D P + Q+AEA L+ + LV+ ++E R+ G R + +
Sbjct: 25 LHLCSDEPRTVKQLAEALGEQPSRLYYHVNKLVEFEMLEVAETRQVGNLTERVYQTVNLG 84
Query: 77 DVVKATEESF 86
DV+ T+
Sbjct: 85 DVIYRTDPKM 94
>gi|320530673|ref|ZP_08031719.1| transcriptional regulator, AraC family [Selenomonas artemidis
F0399]
gi|320137081|gb|EFW29017.1| transcriptional regulator, AraC family [Selenomonas artemidis
F0399]
Length = 255
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 23/73 (31%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
Y + + Y H ++ + ++AE IS +L K+ + R
Sbjct: 153 YLLHAVRYMEEHMEHSITVREVAEELGISVSYLHKLFARCGTSFSAYLTECRLHRAGKML 212
Query: 69 PADQITILDVVKA 81
I + A
Sbjct: 213 RESDEKIYVIAAA 225
>gi|152966603|ref|YP_001362387.1| MarR family transcriptional regulator [Kineococcus radiotolerans
SRS30216]
gi|151361120|gb|ABS04123.1| transcriptional regulator, MarR family [Kineococcus radiotolerans
SRS30216]
Length = 160
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 2/86 (2%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+Y + L + ++ + R+S +AE S L + + L K G + G
Sbjct: 43 SYFEYAV--LSWLSMQPERTTRMSDLAELVNSSLSRLSHLARRLEKQGWLTRRPDPTDGR 100
Query: 65 RLCRPADQITILDVVKATEESFFVAE 90
+ V A
Sbjct: 101 YTLATLTEDGWEKVAAAAPGHVEAVR 126
>gi|332158836|ref|YP_004424115.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2]
gi|331034299|gb|AEC52111.1| hypothetical protein PNA2_1196 [Pyrococcus sp. NA2]
Length = 316
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTK +RVL+ A P + ++A +S+ L IL L + G++ R
Sbjct: 1 MTLTKAE---LRVLLAIA---SGPITLKELASKMNLSKSTLSIILHSLERKGLINIEGKR 54
Query: 61 RGGVRLCRPADQITILDVVKATEESFFV 88
+L + ++ +++ +
Sbjct: 55 PLKAKLADNKPTQLLRKILLMLPKNWTL 82
>gi|256851060|ref|ZP_05556449.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
gi|260661272|ref|ZP_05862186.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
gi|256616122|gb|EEU21310.1| transcriptional regulator [Lactobacillus jensenii 27-2-CHN]
gi|260548209|gb|EEX24185.1| transcriptional regulator [Lactobacillus jensenii 115-3-CHN]
Length = 259
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 4 TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
+K+ Y + ++ Y A H+ +S++A + +L ++ Q L K +
Sbjct: 145 SKKVKYASKDTQAGALMSYIASHHGQ-VTLSEMANEFGYQKNYLSRLCQKLFKQDFIH 201
>gi|163854760|ref|YP_001629058.1| putative transcriptional regulator [Bordetella petrii DSM 12804]
gi|163258488|emb|CAP40787.1| putative transcriptional regulator [Bordetella petrii]
Length = 181
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 19/148 (12%), Positives = 44/148 (29%), Gaps = 21/148 (14%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L++ + H P IAEA S + L+ L +V+ V
Sbjct: 30 IYALLFLSPH---PLHADDIAEALGFSRSNVSMGLKELQSWRLVKLVHQVGDRRDYFETP 86
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY----- 125
+ ++ + E E + + + A ++L
Sbjct: 87 HD--VWEIFRILMEEKRRREIDPTLTLLRETLLEPPAGDSEVHAQQRMSEMLELIELCTG 144
Query: 126 -----------SIECLVRNRSSIKKIFN 142
+++ L++ + ++K+
Sbjct: 145 WFDEVHQLPPETLQSLMKLGAKVQKVLG 172
>gi|55378342|ref|YP_136192.1| cell division control protein 6 [Haloarcula marismortui ATCC 43049]
gi|62286605|sp|Q5V1W6|CDC63_HALMA RecName: Full=Cell division control protein 6 homolog 3; Short=CDC6
homolog 3
gi|55231067|gb|AAV46486.1| cell division control protein 6 [Haloarcula marismortui ATCC 43049]
Length = 403
Score = 38.0 bits (87), Expect = 0.39, Method: Composition-based stats.
Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 11/87 (12%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQ-------IAEACCISELF---LFKILQPLV 49
M LTK + ++ A + P RI IAE + L + L L
Sbjct: 292 MRELTKHGHLALVAMLQLAFEQETPARIRDVYPLYRRIAEGSNVDPLVRRRMHDHLADLA 351
Query: 50 KAGIVETVRGRRGGVRLCRPADQITIL 76
GI+ G + +
Sbjct: 352 MLGILGRQMKNEGRAGGHYYQYEFDVG 378
>gi|313895891|ref|ZP_07829445.1| transcriptional regulator, AraC family [Selenomonas sp. oral taxon
137 str. F0430]
gi|312975316|gb|EFR40777.1| transcriptional regulator, AraC family [Selenomonas sp. oral taxon
137 str. F0430]
Length = 255
Score = 38.0 bits (87), Expect = 0.40, Method: Composition-based stats.
Identities = 12/73 (16%), Positives = 23/73 (31%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
Y + + Y H ++ + ++AE IS +L K+ + R
Sbjct: 153 YLLHAVRYMEEHMEHSITVREVAEELGISVSYLHKLFARCGTSFSAYLTECRLYRAGKML 212
Query: 69 PADQITILDVVKA 81
I + A
Sbjct: 213 RESDEKIYVIAAA 225
>gi|320010629|gb|ADW05479.1| transcriptional regulator, IclR family [Streptomyces flavogriseus
ATCC 33331]
Length = 252
Score = 38.0 bits (87), Expect = 0.42, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
Y +RVL + H D ++I+ + L +L L + G V
Sbjct: 16 YALRVLESVSTHGDG-VTAARISRETGLPTGHLAPLLLTLRREGYV 60
>gi|226359423|ref|YP_002777200.1| ArsR family transcriptional regulator [Rhodococcus opacus B4]
gi|226237907|dbj|BAH48255.1| putative ArsR family transcriptional regulator [Rhodococcus opacus
B4]
Length = 304
Score = 38.0 bits (87), Expect = 0.43, Method: Composition-based stats.
Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 1/88 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L A H + ++AEA I + + ++ L G V + V + P+
Sbjct: 56 VRLLHQVASHPAG-ITVGELAEALGIGQPTVSHHVRKLADVGFVTAEKNGTSTVVVVNPS 114
Query: 71 DQITILDVVKATEESFFVAECFASHKID 98
+ A C D
Sbjct: 115 CCTGLPHAADAVMGVLTPRPCCPDDLPD 142
>gi|309779674|ref|ZP_07674433.1| transcriptional regulator, MarR family [Ralstonia sp. 5_7_47FAA]
gi|308921615|gb|EFP67253.1| transcriptional regulator, MarR family [Ralstonia sp. 5_7_47FAA]
Length = 165
Score = 38.0 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 7/114 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L+ + Q+AE + L + L+ L + G +E V R
Sbjct: 37 RILLALHDNTGGGMAQKQLAERLQMDPGALTRQLKVLEQLGWIERVTDARDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ V+ D L L +AL L +
Sbjct: 97 DAGLAVVLDCMPRRIAFINATLDGLPD-------DLVHALSEALAQIETRLAEV 143
>gi|282165568|ref|YP_003357953.1| putative transcriptional regulator [Methanocella paludicola
SANAE]
gi|282157882|dbj|BAI62970.1| putative transcriptional regulator [Methanocella paludicola
SANAE]
Length = 291
Score = 38.0 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ L+ + +I+E + + +Q L G+VE V G +GG +
Sbjct: 11 LSALINLFREKGRAVKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYKA 66
>gi|313889724|ref|ZP_07823366.1| transcriptional regulator, MarR family [Streptococcus
pseudoporcinus SPIN 20026]
gi|313121769|gb|EFR44866.1| transcriptional regulator, MarR family [Streptococcus
pseudoporcinus SPIN 20026]
Length = 150
Score = 38.0 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 41/114 (35%), Gaps = 11/114 (9%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
VL++ + + + + I IS+ +++ + K G + + + +
Sbjct: 37 HVLIFLSRNVERELFVKDIETELGISKSVASNLVKRMEKNGFI-----KVIPSQTDKRYK 91
Query: 72 QITILDVVKATEESFFVAECFASHKI----DCPLVGSCGLTSVLRKALNAFFDV 121
Q+ + + K E+ + EC + + + C + V+ + D
Sbjct: 92 QVVMAE--KGVEKLPLLQECRKDVENYFFKEISMEEFCVVRKVIDQLKQNMLDY 143
>gi|284162807|ref|YP_003401430.1| TrmB family transcriptional regulator [Archaeoglobus profundus
DSM 5631]
gi|284012804|gb|ADB58757.1| transcriptional regulator, TrmB [Archaeoglobus profundus DSM
5631]
Length = 300
Score = 38.0 bits (87), Expect = 0.45, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 25/62 (40%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ P + +I+E + + +Q L G+VE G +GG R A
Sbjct: 13 LNALITLYRKKGLPVKGEEISELINRNPGTVRNQMQALRALGLVEGAPGPKGGYRPTAKA 72
Query: 71 DQ 72
+
Sbjct: 73 FE 74
>gi|73669658|ref|YP_305673.1| hypothetical protein Mbar_A2165 [Methanosarcina barkeri str.
Fusaro]
gi|72396820|gb|AAZ71093.1| conserved hypothetical protein [Methanosarcina barkeri str.
Fusaro]
Length = 291
Score = 38.0 bits (87), Expect = 0.46, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+ D + +IAE + + +Q L G+VE V G +GG + A
Sbjct: 11 IIALINLQRQKDRAIKGEEIAEVIKRNPGTIRNQMQLLKALGLVEGVPGPKGGYKPTGAA 70
Query: 71 DQ 72
Sbjct: 71 YD 72
>gi|207724390|ref|YP_002254787.1| hypothetical protein RSMK02713 [Ralstonia solanacearum MolK2]
gi|206589609|emb|CAQ36570.1| hypothetical protein RSMK02713 [Ralstonia solanacearum MolK2]
Length = 158
Score = 38.0 bits (87), Expect = 0.47, Method: Composition-based stats.
Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 7/113 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L+ H Q+AE + L + L+ L + G + R
Sbjct: 37 RILLALHDHEGGGLAQKQLAERLQMDPGALTRQLKVLEQLGWIARATDVRDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ V++ D L L +AL A L
Sbjct: 97 DAGLAVVLECMPRRVAFLNATLDGLPD-------DLVHALSEALAAIETGLAD 142
>gi|289579991|ref|YP_003478457.1| hypothetical protein Nmag_0304 [Natrialba magadii ATCC 43099]
gi|289529544|gb|ADD03895.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099]
Length = 177
Score = 38.0 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 20/118 (16%), Positives = 40/118 (33%), Gaps = 5/118 (4%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R L ++ + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LRALTNLHKESEDAIKGEDIAEQVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTAAA 73
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVG---SCGLTSVLRKALNAFFDVLTQY 125
+ L++ + + + E D + S L +A ++
Sbjct: 74 FEA--LEIQQMDDPASVPLEHEGEPITDVIVEEIDLSSVHHPELCRAEIHMQGAISGI 129
>gi|20090252|ref|NP_616327.1| hypothetical protein MA1391 [Methanosarcina acetivorans C2A]
gi|19915246|gb|AAM04807.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
Length = 291
Score = 38.0 bits (87), Expect = 0.49, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 25/62 (40%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+ D + +IAE + + +Q L G+VE V G +GG + A
Sbjct: 11 IIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALGLVEGVPGPKGGYKPTGAA 70
Query: 71 DQ 72
Sbjct: 71 YD 72
>gi|46199189|ref|YP_004856.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB27]
gi|46196814|gb|AAS81229.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB27]
Length = 845
Score = 38.0 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+R+L Y A H + ++A S + +L L++ G V G R
Sbjct: 13 ALRLLAYLADHPEG-VGAKEVARLLGKSLSSAYALLHSLMEEGFVVKEEGGFRLARQKPV 71
Query: 70 ADQIT 74
+ T
Sbjct: 72 PLEPT 76
>gi|55981218|ref|YP_144515.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB8]
gi|55772631|dbj|BAD71072.1| acetyl-coenzyme A synthetase [Thermus thermophilus HB8]
Length = 844
Score = 38.0 bits (87), Expect = 0.50, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+R+L Y A H + ++A S + +L L++ G V G R
Sbjct: 13 ALRLLAYLADHPEG-VGAKEVARLLGKSLSSAYALLHSLMEEGFVVKEEGGFRLARQKPV 71
Query: 70 ADQIT 74
+ T
Sbjct: 72 PLEPT 76
>gi|149008039|ref|ZP_01831587.1| hypothetical protein CGSSp18BS74_10514 [Streptococcus pneumoniae
SP18-BS74]
gi|147760447|gb|EDK67424.1| hypothetical protein CGSSp18BS74_10514 [Streptococcus pneumoniae
SP18-BS74]
Length = 88
Score = 37.6 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV---RGRRGGVRLCRP 69
+++ A H ++ +IA+ +S + + + L K G + V GR GVR+ R
Sbjct: 1 MMVVLANHPNWQVYSDEIAKRKGVSRDTVDRYFKILEKNGYLRIVKKGMGRGKGVRVFRF 60
Query: 70 ADQITILDVV 79
+ I D
Sbjct: 61 FSDVKISDFQ 70
>gi|47097012|ref|ZP_00234585.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
gi|255030867|ref|ZP_05302818.1| hypothetical protein LmonL_20286 [Listeria monocytogenes LO28]
gi|47014594|gb|EAL05554.1| Rrf2 family protein [Listeria monocytogenes str. 1/2a F6854]
Length = 51
Score = 37.6 bits (86), Expect = 0.51, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
+ + NA DVL Q ++ L+++
Sbjct: 12 RELWTRMRNAVRDVLDQTTLADLLKH 37
>gi|311106034|ref|YP_003978887.1| transcriptional regulator family protein 15 [Achromobacter
xylosoxidans A8]
gi|310760723|gb|ADP16172.1| bacterial transcriptional regulator family protein 15
[Achromobacter xylosoxidans A8]
Length = 248
Score = 37.6 bits (86), Expect = 0.52, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ VL A H D P I+ +AE +++ L++ + L + G V G G
Sbjct: 16 LYVLATLARH-DGPLSIAALAEQTGLAQSTLYRQVALLKRWGFVAEHDGEYGP 67
>gi|297561944|ref|YP_003680918.1| IclR family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296846392|gb|ADH68412.1| transcriptional regulator, IclR family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 253
Score = 37.6 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+R+L + A P S IA + ++++L+ + + G V
Sbjct: 10 ALRLLRFLATRPG-PVSASAIAAELGVPRSSVYQLLEAMAREGFV 53
>gi|54301936|ref|YP_131929.1| putative melibiose operon regulatory protein [Photobacterium
profundum SS9]
gi|46915356|emb|CAG22129.1| putative melibiose operon regulatory protein [Photobacterium
profundum SS9]
Length = 168
Score = 37.6 bits (86), Expect = 0.53, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 3 LTKRTD-YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGR 60
L+K + Y ++L Y A H+D P + QIA+ + + I Q +++ I R
Sbjct: 26 LSKHSQFYVSQMLEYIATHHDTPLTVKQIADHVGLHANYAMGIFQRMMQLTIKQYITAMR 85
Query: 61 RGGVRLCRPADQITILDVVKAT 82
R + TILD+
Sbjct: 86 MNHARALLSDTERTILDISLTV 107
>gi|85707149|ref|ZP_01038236.1| rrf2 family protein [Roseovarius sp. 217]
gi|85668308|gb|EAQ23182.1| rrf2 family protein [Roseovarius sp. 217]
Length = 50
Score = 37.6 bits (86), Expect = 0.55, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 103 GSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIFNA 143
+C L L A+ AF+ L + +++ LV + ++ IF+A
Sbjct: 3 EACRLRVALVDAVEAFYAHLDEVTLDALVCDNQALFTIFSA 43
>gi|115372893|ref|ZP_01460198.1| transcriptional regulator, MarR family [Stigmatella aurantiaca
DW4/3-1]
gi|310818527|ref|YP_003950885.1| MarR family transcriptional regulator [Stigmatella aurantiaca
DW4/3-1]
gi|115370160|gb|EAU69090.1| transcriptional regulator, MarR family [Stigmatella aurantiaca
DW4/3-1]
gi|309391599|gb|ADO69058.1| Transcriptional regulator, MarR family [Stigmatella aurantiaca
DW4/3-1]
Length = 166
Score = 37.6 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 28/114 (24%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L++ D P + ++A I+E + ++ L + G ++
Sbjct: 50 VHALLWLG--QDGPLTMGELARRLGITEKTVTGVVDRLEREGHLQ--------------- 92
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ E V C + L ++ +AL+ ++L
Sbjct: 93 --------RERVHEDRRVVRCRLTGSG---QQTFQQLHQLVNQALSQLLEMLDG 135
>gi|21227136|ref|NP_633058.1| transcriptional repressor [Methanosarcina mazei Go1]
gi|20905467|gb|AAM30730.1| Transcriptional repressor [Methanosarcina mazei Go1]
Length = 217
Score = 37.6 bits (86), Expect = 0.56, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 47/127 (37%), Gaps = 9/127 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
MH + +Y + ++Y N P + QIAE +S + ++++ L G VE +
Sbjct: 1 MHTDRLEEY-LETILYLITKNQSPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYKPYQ 59
Query: 61 RGGVRLCRPADQITI---LDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
+ + + I V++ + +HK C L +V L
Sbjct: 60 GVELTEKGAEEAVRIKRKHQVLETFLAEVLDFDRREAHKEACELE-----HAVSDSVLER 114
Query: 118 FFDVLTQ 124
+D L
Sbjct: 115 IYDFLGN 121
>gi|260893577|ref|YP_003239674.1| CBS domain containing protein [Ammonifex degensii KC4]
gi|260865718|gb|ACX52824.1| CBS domain containing protein [Ammonifex degensii KC4]
Length = 209
Score = 37.6 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 19/80 (23%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+R + I ++ + P QIAE ++ L L L AG++E R R
Sbjct: 1 MELTRRQE-AILGIV----KAEGPITSEQIAERLNVARATLRPDLALLTMAGLLEA-RPR 54
Query: 61 RGGVRLCRPADQITILDVVK 80
G + ++ + +
Sbjct: 55 VGYYYTGKSPYEVVANKIRR 74
>gi|116662114|ref|YP_829169.1| DtxR family iron dependent repressor [Arthrobacter sp. FB24]
gi|116612866|gb|ABK05588.1| iron (metal) dependent repressor, DtxR family [Arthrobacter sp.
FB24]
Length = 224
Score = 37.6 bits (86), Expect = 0.57, Method: Composition-based stats.
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 2/99 (2%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATE 83
P +S IAE + ++ LVK G+V G + L + + V +
Sbjct: 27 PMTVSSIAERLGVRPSTASDGIKKLVKQGLV--THAPYGSIELTDAGREHAVAMVRRHRL 84
Query: 84 ESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
F+ + + +V K + L
Sbjct: 85 LETFLVQMLGYGWDEVHDEAEILEHAVSEKLIERIDQKL 123
>gi|289207949|ref|YP_003460015.1| ribonuclease BN [Thioalkalivibrio sp. K90mix]
gi|288943580|gb|ADC71279.1| ribonuclease BN [Thioalkalivibrio sp. K90mix]
Length = 452
Score = 37.6 bits (86), Expect = 0.60, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 50/139 (35%), Gaps = 12/139 (8%)
Query: 1 MHLT--KRTDYGIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
+ L+ R G+ ++ P + +A + L ++ Q L AG++
Sbjct: 314 LRLSGAARERMGLHLMQQVGQRFLDGRSPPTLDHVAHDLSVPGNALGEVAQALESAGLLV 373
Query: 56 TVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
R ++I + ++++A + A + L G + + L +
Sbjct: 374 RAGTDATCYVPGRDLERIRVDEILEALRQD-------ADARALRRLQGDPAVEATLEELE 426
Query: 116 NAFFDVLTQYSIECLVRNR 134
A D L ++ L+++
Sbjct: 427 TARRDHLDGRTLRDLLKSE 445
>gi|297197780|ref|ZP_06915177.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
29083]
gi|197716631|gb|EDY60665.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
29083]
Length = 267
Score = 37.6 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
+R VL A + P R+ +++EA + ++ +LQ LV+ G V T
Sbjct: 22 AVRTVAVLELLAARGERPARLRELSEALGVPRSSMYALLQTLVECGWVRT 71
>gi|118431283|ref|NP_147639.2| hypothetical protein APE_0974.1 [Aeropyrum pernix K1]
gi|116062605|dbj|BAA79958.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 299
Score = 37.6 bits (86), Expect = 0.62, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M LT + L+ + + ++AEA E + ++ L G+VE+ G
Sbjct: 1 MKMLTSLQREVLETLVSLYERHKRMIKSKEVAEALGKDEGTVRNVIMWLKSLGLVESRTG 60
Query: 60 RRGGVRLCRPADQ 72
GG A +
Sbjct: 61 PAGGYMPTLKAYE 73
>gi|295692672|ref|YP_003601282.1| transcriptional regulator [Lactobacillus crispatus ST1]
gi|295030778|emb|CBL50257.1| Transcriptional regulator [Lactobacillus crispatus ST1]
Length = 295
Score = 37.2 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 4 TKRTDYGIR------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
+ Y R ++ Y A+HN + Q+A+ + +L ++ + L +
Sbjct: 171 SNDVKYASRDSQSGAIMTYLAVHNGN-VTLQQMADHFGYQKNYLSRLCKKLFDLDFIH 227
>gi|147920241|ref|YP_685992.1| hypothetical protein RCIX1391 [uncultured methanogenic archaeon
RC-I]
gi|110621388|emb|CAJ36666.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length = 292
Score = 37.2 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ L+ + +I+E + + +Q L G+VE V G +GG +
Sbjct: 12 LSALINLFREKGRAIKGEEISERIDRNPGTVRNQMQSLKALGLVEGVPGPKGGYKA 67
>gi|117927555|ref|YP_872106.1| MarR family transcriptional regulator [Acidothermus cellulolyticus
11B]
gi|117648018|gb|ABK52120.1| transcriptional regulator, MarR family [Acidothermus cellulolyticus
11B]
Length = 171
Score = 37.2 bits (85), Expect = 0.67, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 41/113 (36%), Gaps = 8/113 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
+ LT + L D P ++A C + E + +I+ LV+AG V T
Sbjct: 51 LQLTHAGLLALHAL------RDGPLSQRELAARCSVEEQTMSRIVAKLVRAGYV-TKEPD 103
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
R R A D+ +A +A A D P L S++ +
Sbjct: 104 PHDRRRRRIAMTARGKDIYRAANSGDPIARLVADAVDD-PEHLWHMLRSIIER 155
>gi|332796263|ref|YP_004457763.1| putative signal transduction protein with CBS domains [Acidianus
hospitalis W1]
gi|332693998|gb|AEE93465.1| putative signal transduction protein with CBS domains [Acidianus
hospitalis W1]
Length = 300
Score = 37.2 bits (85), Expect = 0.68, Method: Composition-based stats.
Identities = 12/63 (19%), Positives = 23/63 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + ++A+ E + I+ L G+VE+ G GG A
Sbjct: 12 LLALIELYNKGKKMIKSKEVADMIGKDEGTVRNIILGLKVLGLVESKPGPNGGYIPTLKA 71
Query: 71 DQI 73
+
Sbjct: 72 YEF 74
>gi|253744028|gb|EET00289.1| Hypothetical protein GL50581_2477 [Giardia intestinalis ATCC
50581]
Length = 727
Score = 37.2 bits (85), Expect = 0.69, Method: Composition-based stats.
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 24 PNRISQIAEACCISELFLFKILQPLVK-AGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
I +I++ + F+ +I + L G++E+ +G G + + ++ +++K
Sbjct: 11 LATIDEISQRQDATMRFVERIAKQLGHLKGVLESSQGPFPGPNMTKSELTTSLGEILKYI 70
Query: 83 EESF 86
E +
Sbjct: 71 EANL 74
>gi|116754457|ref|YP_843575.1| signal transduction protein [Methanosaeta thermophila PT]
gi|116665908|gb|ABK14935.1| putative signal transduction protein with CBS domains
[Methanosaeta thermophila PT]
Length = 288
Score = 37.2 bits (85), Expect = 0.72, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 22/56 (39%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ L+ + +IAE + + +Q L +VE V G +GG +
Sbjct: 11 LTALINIHRREGRAVKGEEIAELIDRNPGTIRNQMQSLKALNLVEGVPGPKGGYKA 66
>gi|291544335|emb|CBL17444.1| DnaD and phage-associated domain [Ruminococcus sp. 18P13]
Length = 323
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 6/119 (5%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL------QPLVKAGIVETVRGRRGG 63
+RVL+Y H + I EA IS + L ++G + R
Sbjct: 32 ALRVLLYLLRHGNETLTDEAIGEALSISREQVEDAFLFWEQANILERSGTAQPQEPVRQN 91
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
+V K + ++ + S + S+ A F +L
Sbjct: 92 APAPAAPTPQPATEVPKPFAQRSSAGFLPTPSELAARIQESREIKSLFDMAEQQFHRML 150
>gi|283476992|emb|CAY72884.1| putative negative regulator [Erwinia pyrifoliae DSM 12163]
gi|310765326|gb|ADP10276.1| putative negative regulator [Erwinia sp. Ejp617]
Length = 83
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
Query: 80 KATEESFFV-AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIK 138
+A + ++ C + +C + + F L +Y++ V + +
Sbjct: 12 RALFCPASLRTGRMTNNSKFCHITPACRRKTARHDRVQRFLHELDRYTLAERVEDNHPLY 71
Query: 139 KIF 141
I
Sbjct: 72 PIL 74
>gi|218512491|ref|ZP_03509331.1| putative transcriptional regulator protein [Rhizobium etli 8C-3]
Length = 81
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 6/58 (10%)
Query: 81 ATEESFFVAECFA-SHKIDCP-----LVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
A E C C C + ++ +A A+ + L + + LV
Sbjct: 1 AVEGKARSFTCTNIRENNPCRPAGYCDSKPCAVARIMWEADEAWRETLRRVRLSDLVD 58
>gi|25028961|ref|NP_739015.1| putative transcription factor [Corynebacterium efficiens YS-314]
gi|259508026|ref|ZP_05750926.1| MarR family bacterial regulatory protein [Corynebacterium efficiens
YS-314]
gi|23494248|dbj|BAC19215.1| putative transcription factor [Corynebacterium efficiens YS-314]
gi|259164367|gb|EEW48921.1| MarR family bacterial regulatory protein [Corynebacterium efficiens
YS-314]
Length = 173
Score = 37.2 bits (85), Expect = 0.73, Method: Composition-based stats.
Identities = 13/85 (15%), Positives = 30/85 (35%), Gaps = 11/85 (12%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
L ++ + R+S++AE ++ L +++ L KAG V G +
Sbjct: 62 ALAQISMAPERRLRMSELAELSDMTLSHLSRVVTRLEKAGWVRREPDPTDGRATVAVLTE 121
Query: 73 -----------ITILDVVKATEESF 86
+ +V + ++
Sbjct: 122 DGWDKVVEAAPGHVGEVRRLIFDNL 146
>gi|313618822|gb|EFR90709.1| Rrf2 family protein [Listeria innocua FSL S4-378]
Length = 51
Score = 37.2 bits (85), Expect = 0.74, Method: Composition-based stats.
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 108 TSVLRKALNAFFDVLTQYSIECLVRN 133
+ + NA DVL Q ++ L+++
Sbjct: 12 RELWTRMRNAVRDVLDQTTLSDLLKH 37
>gi|108797169|ref|YP_637366.1| GntR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119866254|ref|YP_936206.1| GntR family transcriptional regulator [Mycobacterium sp. KMS]
gi|108767588|gb|ABG06310.1| transcriptional regulator, GntR family [Mycobacterium sp. MCS]
gi|119692343|gb|ABL89416.1| transcriptional regulator, GntR family [Mycobacterium sp. KMS]
Length = 260
Score = 37.2 bits (85), Expect = 0.76, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
R++ I +AE S L ++L L +AG+V V GR GG+ +
Sbjct: 11 RIVADINAGIPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHG 70
Query: 70 ADQITILDV 78
+ + DV
Sbjct: 71 QVERNLADV 79
>gi|33592909|ref|NP_880553.1| transcriptional regulator [Bordetella pertussis Tohama I]
gi|33572557|emb|CAE42137.1| probable transcriptional regulator [Bordetella pertussis Tohama
I]
gi|332382322|gb|AEE67169.1| transcriptional regulator [Bordetella pertussis CS]
Length = 246
Score = 37.2 bits (85), Expect = 0.78, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
RVL A + P ++ +AE +++ L++ + L + G V G LC
Sbjct: 12 RVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGAYTPGPLCVQ 71
Query: 70 AD---QITILDVVKATEESFFVA 89
+ + +A + +A
Sbjct: 72 LARGFDQSSYLIQEALPDMTRLA 94
>gi|126432791|ref|YP_001068482.1| GntR family transcriptional regulator [Mycobacterium sp. JLS]
gi|126232591|gb|ABN95991.1| transcriptional regulator, GntR family [Mycobacterium sp. JLS]
Length = 260
Score = 37.2 bits (85), Expect = 0.82, Method: Composition-based stats.
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
Query: 12 RVLMYC--AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
R++ + +AE S L ++L L +AG+V V GR GG+ +
Sbjct: 11 RIVADINAGVPGAKLGSERDLAERYGTSRSSLRQVLAALEEAGMVHRVIGRAGGIFISHG 70
Query: 70 ADQITILDV 78
+ + DV
Sbjct: 71 QVERNLADV 79
>gi|229823766|ref|ZP_04449835.1| hypothetical protein GCWU000282_01068 [Catonella morbi ATCC
51271]
gi|229786805|gb|EEP22919.1| hypothetical protein GCWU000282_01068 [Catonella morbi ATCC
51271]
Length = 160
Score = 37.2 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 25/54 (46%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
RV+ Y H + P + ++AE IS+ ++ + + K +++ R R
Sbjct: 46 RVVTYLFHHQERPVTMMEVAEKMKISKPVASQLFKRMEKNQLIDIKPDPRDKRR 99
>gi|147677236|ref|YP_001211451.1| transcriptional regulator [Pelotomaculum thermopropionicum SI]
gi|146273333|dbj|BAF59082.1| predicted transcriptional regulator [Pelotomaculum
thermopropionicum SI]
Length = 212
Score = 37.2 bits (85), Expect = 0.83, Method: Composition-based stats.
Identities = 21/107 (19%), Positives = 40/107 (37%), Gaps = 8/107 (7%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LT+R + ++ ++ P QIAE ++ L L L AG++E R R
Sbjct: 1 MQLTRRQE----TILEIVKNSG-PITGEQIAEKLSLTRATLRPDLAILTMAGLLEA-RPR 54
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGL 107
G + +++ + + S + K C + +
Sbjct: 55 VGYFYSGKSPNRVVAEKLHRVLVASIKSVPVVVNEK--CSVYDAVVT 99
>gi|33596207|ref|NP_883850.1| transcriptional regulator [Bordetella parapertussis 12822]
gi|33601618|ref|NP_889178.1| transcriptional regulator [Bordetella bronchiseptica RB50]
gi|33573210|emb|CAE36865.1| probable transcriptional regulator [Bordetella parapertussis]
gi|33576055|emb|CAE33134.1| probable transcriptional regulator [Bordetella bronchiseptica
RB50]
Length = 245
Score = 37.2 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
RVL A + P ++ +AE +++ L++ + L + G V G LC
Sbjct: 12 RVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGAYTPGPLCVQ 71
Query: 70 AD---QITILDVVKATEESFFVA 89
+ + +A + +A
Sbjct: 72 LARGFDQSSYLIQEALPDMTRLA 94
>gi|258654890|ref|YP_003204046.1| IclR family transcriptional regulator [Nakamurella multipartita
DSM 44233]
gi|258558115|gb|ACV81057.1| transcriptional regulator, IclR family [Nakamurella multipartita
DSM 44233]
Length = 265
Score = 36.8 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 21/56 (37%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
IR+L A +S+IA +++ + + L + G+V R
Sbjct: 22 AIRILDLLAEQRGQTLTLSEIARGLGLAKSSVSNMCAALEEGGLVRRTAAGYLLGR 77
>gi|187929868|ref|YP_001900355.1| IclR family transcriptional regulator [Ralstonia pickettii 12J]
gi|187726758|gb|ACD27923.1| transcriptional regulator, IclR family [Ralstonia pickettii 12J]
Length = 256
Score = 36.8 bits (84), Expect = 0.88, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T +D + VL A H P ++ E + + L++ + L + G V G
Sbjct: 17 TSGSDRVLMVLATIARH-GRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAGTYAP 75
>gi|256374564|ref|YP_003098224.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255918867|gb|ACU34378.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
43827]
Length = 139
Score = 36.8 bits (84), Expect = 0.89, Method: Composition-based stats.
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 2/69 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L A P R+ +A ++ L +I+ LV+AG V + G
Sbjct: 34 AVSALATLARC--GPMRLGDLANKEGVAPPTLSRIVATLVEAGYVRREPDPQDGRAWLAS 91
Query: 70 ADQITILDV 78
+ V
Sbjct: 92 PTDEGVAMV 100
>gi|320008004|gb|ADW02854.1| transcriptional regulator, IclR family [Streptomyces flavogriseus
ATCC 33331]
Length = 279
Score = 36.8 bits (84), Expect = 0.90, Method: Composition-based stats.
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
L+ A D P R+ ++AE + ++++L+ LV G V T
Sbjct: 35 ALLELLASRGDRPARLDELAEELGVPRSSMYQLLRTLVDCGWVRTDT 81
>gi|302525067|ref|ZP_07277409.1| GntR-family transcriptional regulator [Streptomyces sp. AA4]
gi|302433962|gb|EFL05778.1| GntR-family transcriptional regulator [Streptomyces sp. AA4]
Length = 240
Score = 36.8 bits (84), Expect = 0.91, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---RPADQITILD 77
D ++AE +S + L + ++ L AG VE+ RGR GG + + + +
Sbjct: 42 GDRLPSERELAERLGVSRVTLREAIRALADAGYVESRRGRYGGTFVNEKLPEPAERAVGE 101
Query: 78 VVKATEESFFVAECFAS 94
V A E
Sbjct: 102 VDAAGLEDALCLRHVLE 118
>gi|15921694|ref|NP_377363.1| hypothetical protein ST1405 [Sulfolobus tokodaii str. 7]
gi|15622481|dbj|BAB66472.1| 300aa long conserved hypothetical protein [Sulfolobus tokodaii
str. 7]
Length = 300
Score = 36.8 bits (84), Expect = 0.92, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + ++A+ E + I+ L G++E+ G GG A
Sbjct: 12 LLALVDLYNRYKRMIKSKEVADVIGKDEGTVRNIILSLKVLGLIESKPGPNGGYVPTLKA 71
Query: 71 DQ 72
+
Sbjct: 72 YE 73
>gi|325002939|ref|ZP_08124051.1| transcriptional regulator CatR [Pseudonocardia sp. P1]
Length = 270
Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 15 MYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
+ A D P + +AEA +S + +IL L G V R G R +
Sbjct: 21 VLLAFDADRPRPTGTDLAEATGLSRPAVRRILLTLEHLGYV-----RPVGNRWRLTPRVL 75
Query: 74 TILDVVKATEESFFVAE 90
+I AT +A
Sbjct: 76 SIGQHFTATNSIVELAR 92
>gi|256372737|ref|YP_003110561.1| hypothetical protein Afer_1985 [Acidimicrobium ferrooxidans DSM
10331]
gi|256009321|gb|ACU54888.1| hypothetical protein Afer_1985 [Acidimicrobium ferrooxidans DSM
10331]
Length = 138
Score = 36.8 bits (84), Expect = 0.95, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGI-VETVRGRRG-----GVR 65
VL+ A RI IAE I+E I+ L++AG V T GRR R
Sbjct: 36 HVLVCIARDPG--IRIRDIAERVGITERAAQGIVADLIRAGYVVRTRIGRRNHYEIDPTR 93
Query: 66 LCRPADQIT--ILDVVKAT 82
R + + D++ A
Sbjct: 94 PVRHPVEQPHLVGDLLGAL 112
>gi|15668416|ref|NP_247212.1| hypothetical protein MJ_0241 [Methanocaldococcus jannaschii DSM
2661]
gi|2495873|sp|Q57693|Y241_METJA RecName: Full=Uncharacterized protein MJ0241
gi|1499019|gb|AAB98229.1| hypothetical protein MJ_0241 [Methanocaldococcus jannaschii DSM
2661]
Length = 145
Score = 36.8 bits (84), Expect = 0.97, Method: Composition-based stats.
Identities = 29/151 (19%), Positives = 55/151 (36%), Gaps = 29/151 (19%)
Query: 1 MH---LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M LTK+ ++ + P I ++A+ + L ++ L G+VET
Sbjct: 1 MKVVGLTKK------IMEHL----KEPITIKELAKKLNMHPKNLDVKIRVLRDLGLVETK 50
Query: 58 RGRRGGVRLCRPAD------QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL 111
+GR GGVRL + +IT+ + + A +G ++VL
Sbjct: 51 KGRNGGVRLTKEGLYLLEKGEITLGSLKLQIVAKDRI-GLLADITSRISKIGGNITSTVL 109
Query: 112 RKALNAFFDVL-------TQY--SIECLVRN 133
+ + L + ++E +V
Sbjct: 110 EREGDEVIIYLVVENVDKDEIKNTLEDVVEK 140
>gi|238927173|ref|ZP_04658933.1| response regulator [Selenomonas flueggei ATCC 43531]
gi|238884955|gb|EEQ48593.1| response regulator [Selenomonas flueggei ATCC 43531]
Length = 255
Score = 36.8 bits (84), Expect = 1.00, Method: Composition-based stats.
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
Y + + + H P + ++A+ +S +L K+
Sbjct: 153 YLLHAMRHMEEHIAEPITVREVADELGLSVSYLHKLFSRC 192
>gi|266623352|ref|ZP_06116287.1| putative pectin degradation repressor protein KdgR [Clostridium
hathewayi DSM 13479]
gi|288864862|gb|EFC97160.1| putative pectin degradation repressor protein KdgR [Clostridium
hathewayi DSM 13479]
Length = 255
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+++++ A +S IAEA +S + +ILQ L G V
Sbjct: 15 ALQIILALAEQKG-WVNLSDIAEATGLSPSTVHRILQELQACGFV 58
>gi|197121149|ref|YP_002133100.1| ribonuclease BN [Anaeromyxobacter sp. K]
gi|196170998|gb|ACG71971.1| ribonuclease BN [Anaeromyxobacter sp. K]
Length = 439
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 12 RVLMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
R L+ A + +A + + L L + IV ++ GG+ R
Sbjct: 300 RTLLLVAQAFDRGEDAPDPGDVAARLGATPEEASEALAALRQRAIVVSL--ADGGLVPAR 357
Query: 69 PADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIE 128
P ++IT+LDV +A L+ +L + L +
Sbjct: 358 PLEKITLLDVRRAVSGREA------------RPDERGILSEILTDLESKAAGQLDAITFR 405
Query: 129 CLVRNRSSIKK 139
L + +
Sbjct: 406 DLCDRERAREA 416
>gi|237731129|ref|ZP_04561610.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226906668|gb|EEH92586.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 285
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 10/85 (11%)
Query: 1 MHLTKRTDYGIRVLMYCA-IHNDYPN---RISQIAEACCISELFLFKILQPLVKAGIVET 56
M L+ + ++ A +D I IA + + L K G + T
Sbjct: 18 MKLSS-----VAIMARLADFSSDEGVCWPSIETIARQLGAGPSTIRTAIAKLEKDGWL-T 71
Query: 57 VRGRRGGVRLCRPADQITILDVVKA 81
RR G R ++ + + A
Sbjct: 72 RTQRRNGNRNASNVYRLNVAKLQAA 96
>gi|54025779|ref|YP_120021.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
gi|54017287|dbj|BAD58657.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
Length = 162
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 5/112 (4%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L+ A+ P + IAEA + L +L+ L AG++ R R L +
Sbjct: 51 LVMLALWERAPMSVKAIAEAIQLDSPTLSPLLKRLEAAGLITRERDPRDERNLQVNLTEA 110
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
++A E A + L L VL + A L+
Sbjct: 111 --GAALRAKAERIPPAVVESLGVTIADLEE---LREVLTRVNEAARRSLSTT 157
>gi|169837450|ref|ZP_02870638.1| transcriptional regulator [candidate division TM7 single-cell
isolate TM7a]
Length = 63
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDY-PNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
M L+ + ++ A P +AE +S +L KI + LV A ++ + +G
Sbjct: 1 MKLSGAVEQACCIMALLADPKRTTPITNDALAEKMAVSPTYLKKISRKLVVAQLITSAQG 60
Query: 60 RRG 62
G
Sbjct: 61 AGG 63
>gi|114776998|ref|ZP_01452018.1| Ribonuclease BN [Mariprofundus ferrooxydans PV-1]
gi|114552519|gb|EAU54979.1| Ribonuclease BN [Mariprofundus ferrooxydans PV-1]
Length = 460
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 11/125 (8%), Positives = 32/125 (25%), Gaps = 8/125 (6%)
Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ + Y H ++ +A + I+ L ++
Sbjct: 326 AMLTMFYIGRHFYRQQNDWKLDDMARWLGVPLNISEAIVDKLHATQLIILTSEGSPPYVP 385
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
R + + ++ A + L + +L A + +
Sbjct: 386 ARDMETLQTRHILDAIRSGNE-----DEGLMQWRLPAEPAVDRLLEARDEAIDQAMQHQT 440
Query: 127 IECLV 131
++ +V
Sbjct: 441 LKDMV 445
>gi|323487835|ref|ZP_08093093.1| Adenosine deaminase [Planococcus donghaensis MPA1U2]
gi|323398569|gb|EGA91357.1| Adenosine deaminase [Planococcus donghaensis MPA1U2]
Length = 186
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
V+ Y + + QIA +S +L +I +
Sbjct: 84 VMTYLTANYKERVSLQQIAHHVGMSPSYLERIFKQ 118
>gi|317487163|ref|ZP_07945964.1| gntR family Bacterial regulatory protein [Bilophila wadsworthia
3_1_6]
gi|316921564|gb|EFV42849.1| gntR family Bacterial regulatory protein [Bilophila wadsworthia
3_1_6]
Length = 215
Score = 36.8 bits (84), Expect = 1.0, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 12 RVLMYC---AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
R+L AI ++++AE IS+ L L L G V R V
Sbjct: 18 RILSDLQQGAIAPGETISLNKLAETLNISKTPLRDALLELQAEGFVTLYPQRGVMVNALS 77
Query: 69 PADQITILDVVKATEESF 86
++ I +V +
Sbjct: 78 EEEKREIYEVCGVLDGQV 95
>gi|187926723|ref|YP_001893068.1| transcriptional regulator, MarR family [Ralstonia pickettii 12J]
gi|241665055|ref|YP_002983414.1| MarR family transcriptional regulator [Ralstonia pickettii 12D]
gi|187728477|gb|ACD29641.1| transcriptional regulator, MarR family [Ralstonia pickettii 12J]
gi|240867082|gb|ACS64742.1| transcriptional regulator, MarR family [Ralstonia pickettii 12D]
Length = 165
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 8/118 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L+ H Q+AE + L + L+ L + G +E R
Sbjct: 37 RILLALHDHAGGGMAQKQLAERLQMDPGALTRQLKVLDQLGWIERTTDARDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY-SIE 128
+ V+ D L L +AL + + S+
Sbjct: 97 DAGLAVVLDCMPRRIAFINATLDGLPD-------DLVRALSEALAQIETRIAEVPSLA 147
>gi|325003130|ref|ZP_08124242.1| hypothetical protein PseP1_30385 [Pseudonocardia sp. P1]
Length = 281
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 2/107 (1%)
Query: 11 IRV-LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+RV L++ P + ++AE IS+ L+ L + G V + P
Sbjct: 32 VRVRLLHAVATAGNPVPVGRLAELVGISQATCSHHLRKLAETGFVILRKEGTTTQVTVNP 91
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+ A C D + L
Sbjct: 92 NCCTGLPHAADAVMGLLAPGPCCPDDIPD-DVTVRAMTDDDWDAVLR 137
>gi|300711575|ref|YP_003737389.1| hypothetical protein HacjB3_11070 [Halalkalicoccus jeotgali B3]
gi|299125258|gb|ADJ15597.1| hypothetical protein HacjB3_11070 [Halalkalicoccus jeotgali B3]
Length = 177
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LTALINLHREAEDAVKGEDIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTATA 73
Query: 71 DQ 72
+
Sbjct: 74 YE 75
>gi|149183344|ref|ZP_01861782.1| YqzB [Bacillus sp. SG-1]
gi|148848941|gb|EDL63153.1| YqzB [Bacillus sp. SG-1]
Length = 209
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L R +Y ++++ ++ P QIAE ++ L L L AG ++
Sbjct: 1 MELNNRQEYILQIV-----KDNGPITGEQIAERLNLTRATLRPDLAILTMAGYLDARPRV 55
>gi|258510181|ref|YP_003183615.1| transcriptional regulator, IclR family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
gi|257476907|gb|ACV57226.1| transcriptional regulator, IclR family [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 257
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVR 65
RVL + H + +++IAE +++ ++L+ L + V ++ R G
Sbjct: 11 AARVLKLLSRHKYRQSTLTEIAERLGVNKTTCLRVLRTLEREDFVSYDPQSRRYSLGPYL 70
Query: 66 LCRPADQITILDVVKATEESFFVAECFASH 95
+ A + DV
Sbjct: 71 IPLGARAADLNDVYAHALAELHQVAAHTGM 100
>gi|218290689|ref|ZP_03494780.1| transcriptional regulator, IclR family [Alicyclobacillus
acidocaldarius LAA1]
gi|218239354|gb|EED06552.1| transcriptional regulator, IclR family [Alicyclobacillus
acidocaldarius LAA1]
Length = 257
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 4/90 (4%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV----ETVRGRRGGVR 65
RVL + H + +++IAE +++ ++L+ L + V ++ R G
Sbjct: 11 AARVLKLLSRHKYRQSTLTEIAERLGVNKTTCLRVLRTLEREDFVSYDPQSRRYSLGPYL 70
Query: 66 LCRPADQITILDVVKATEESFFVAECFASH 95
+ A + DV
Sbjct: 71 IPLGARAADLNDVYAHALAELHQVAAHTGM 100
>gi|299136916|ref|ZP_07030099.1| transcriptional regulator, AraC family [Acidobacterium sp.
MP5ACTX8]
gi|298601431|gb|EFI57586.1| transcriptional regulator, AraC family [Acidobacterium sp.
MP5ACTX8]
Length = 321
Score = 36.8 bits (84), Expect = 1.1, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP-LVKAGIVETVRGRRGGVRLCRPA 70
RVL Y A H D + ++A+ IS +L + + L V+ R R
Sbjct: 223 RVLAYIAEHLDQTITLEELAKVAEISPNYLIALFRQSLGMTPHKYVVQQRIEQARRLLNE 282
Query: 71 DQITILDVVK 80
+++L++ +
Sbjct: 283 RDLSLLEIAQ 292
>gi|325969941|ref|YP_004246132.1| GntR family transcriptional regulator [Spirochaeta sp. Buddy]
gi|324025179|gb|ADY11938.1| transcriptional regulator, GntR family [Spirochaeta sp. Buddy]
Length = 225
Score = 36.4 bits (83), Expect = 1.1, Method: Composition-based stats.
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 5 KRTDYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
++Y +RVL + + ++IA IS + + L L + GIVE + +
Sbjct: 11 TASEYALRVLKENIISLDLAPGSMVSENEIAAQLGISRTPVREALIELSRVGIVEILPQK 70
Query: 61 RGGVRL 66
+
Sbjct: 71 GSRINC 76
>gi|320449824|ref|YP_004201920.1| acetyl-coenzyme A synthetase [Thermus scotoductus SA-01]
gi|320149993|gb|ADW21371.1| acetyl-coenzyme A synthetase [Thermus scotoductus SA-01]
Length = 843
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+R+L Y A H + + ++A S + +L L + G
Sbjct: 13 ALRILAYLAEHPEG-VEVKEVARLLGKSLSTAYALLNSLAEEGFA 56
>gi|292654982|ref|YP_003534879.1| transcription repressor [Haloferax volcanii DS2]
gi|291372853|gb|ADE05080.1| transcription repressor [Haloferax volcanii DS2]
Length = 231
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 37/117 (31%), Gaps = 3/117 (2%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
DY ++ + + P S IAE + + ++ L + G+V R + GV L
Sbjct: 8 DY-LKAIYTLQMEQGPPVSTSDIAEYLGKTPPTVTSMVGKLEERGLV--DREKYKGVELT 64
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ + + + ++ E + + + L +
Sbjct: 65 AEGETVALEVLRHHRLLEAYLTEHLDYSWSEVHDEADALEHHISEEFEKRVAAALGE 121
>gi|289583371|ref|YP_003481781.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099]
gi|289532869|gb|ADD07219.1| Protein of unknown function DUF293 [Natrialba magadii ATCC 43099]
Length = 173
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 2/88 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R ++ + + IA + + +Q L +V+ V G +GG R A
Sbjct: 14 LRAVIDLHMEQQTTVKGDDIAAEVGLKAGTIRNKMQSLKALQLVDGVPGPKGGYRP--TA 71
Query: 71 DQITILDVVKATEESFFVAECFASHKID 98
T L+V + + + +
Sbjct: 72 AAYTALEVQQIDDPAIVPVRYDGRMMNN 99
>gi|257053172|ref|YP_003131005.1| Protein of unknown function DUF293 [Halorhabdus utahensis DSM
12940]
gi|256691935|gb|ACV12272.1| Protein of unknown function DUF293 [Halorhabdus utahensis DSM
12940]
Length = 178
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 2/121 (1%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+ +D P + ++IAE +E + ++ L G+V++V G RGG +
Sbjct: 15 ALTTLVNEYAESDSPVKSARIAEQVNRTEGSVKNQMRKLSALGLVDSVPGPRGGYQPTEK 74
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR-KALNAFFDVLTQYSIE 128
A Q D A E VA+ F + V + +A F D+L I
Sbjct: 75 AFQALERD-QDADGEKVVVAQNFERVDVTVDEVTLTNVHHPTDCRARVHFQDILDGIDIG 133
Query: 129 C 129
Sbjct: 134 D 134
>gi|149177233|ref|ZP_01855839.1| hypothetical protein PM8797T_17252 [Planctomyces maris DSM 8797]
gi|148843947|gb|EDL58304.1| hypothetical protein PM8797T_17252 [Planctomyces maris DSM 8797]
Length = 131
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRR 61
L+ T +R+++Y A + + E S+ + L L AG++E R G+
Sbjct: 35 LSDETR--LRIMLYLAQEEELFVTA--LCERLNQSQPAVSHHLALLRDAGLIEARRDGKH 90
Query: 62 GGVRLCRPADQITILDVVKATEESFF 87
+CR + ++ + +
Sbjct: 91 NFYSICREHFHSIMGELFNSFNDPEE 116
>gi|56962183|ref|YP_173906.1| AraC/XylS family transcriptional regulator [Bacillus clausii
KSM-K16]
gi|56908418|dbj|BAD62945.1| AraC/XylS family transcriptional regulator [Bacillus clausii
KSM-K16]
Length = 298
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 7/37 (18%), Positives = 16/37 (43%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPL 48
R L Y + D ++ IA + + +L ++ +
Sbjct: 181 RALAYIHQNYDREVSVADIANSVHLHPGYLQRVFKAF 217
>gi|91778226|ref|YP_553434.1| IclR family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91690886|gb|ABE34084.1| transcriptional regulator, IclR family [Burkholderia xenovorans
LB400]
Length = 249
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 12/59 (20%), Positives = 21/59 (35%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
G+ +L A + P I +AE +++ + LQ L AG +
Sbjct: 8 GLMLLEALADQSGRPVTIQLLAERVGLTKSNTHRTLQTLAHAGYATRDESSGNYRSTFK 66
>gi|332026330|gb|EGI66459.1| DnaJ-like protein subfamily C member 3 [Acromyrmex echinatior]
Length = 481
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 21/120 (17%), Positives = 34/120 (28%), Gaps = 5/120 (4%)
Query: 9 YGI--RVLMYCAIHNDYPNRISQIAEACCISELFLF--KILQPLVKAGIVETVRGRRGGV 64
YG+ L+ + ++IA+ FL ++ L
Sbjct: 2 YGLLIVALLDLTLDVVGSVSQAEIAKHLEYGREFLAKGQLQDALSHYHAAVEGDPSNYLT 61
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV-LRKALNAFFDVLT 123
R + + A + V E A G+ L +A N F DVL
Sbjct: 62 YYKRGTVYLALGKAKFALLDLDKVLELKADFTPARLQRGNILLKQAHFDEAENDFDDVLA 121
>gi|289579989|ref|YP_003478455.1| iron (metal) dependent repressor, DtxR family [Natrialba magadii
ATCC 43099]
gi|289529542|gb|ADD03893.1| iron (metal) dependent repressor, DtxR family [Natrialba magadii
ATCC 43099]
Length = 225
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 3/117 (2%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
DY ++ + +D + S+IAEA ++ + +L+ L G+V R + GV L
Sbjct: 8 DY-LKAIYQLQRDHDERVKTSEIAEALDVTSPTVTSMLEKLGDRGLV--DREKYRGVTLT 64
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ + + V ++ E + + D L +
Sbjct: 65 DEGETVALEVVRHHRLLEAYLTEHLDYDWSEVHAEADRLEHHISEDFEQRVADALGE 121
>gi|325002721|ref|ZP_08123833.1| iron dependent repressor [Pseudonocardia sp. P1]
Length = 226
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 19/112 (16%), Positives = 40/112 (35%), Gaps = 2/112 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
++ + A + +S +AE +S +++ LV+AG+V R G+ L
Sbjct: 5 LKTIFLLAERWEGSVGVSALAERLGVSSPSASGMVRKLVEAGLV--DHARYAGITLTPSG 62
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
+ + V + F+ + +V + L+ D L
Sbjct: 63 RESALAVVRRHRLIEMFLVTELDLAWDEVHEEAEALEHAVSDRLLDRIDDRL 114
>gi|52080350|ref|YP_079141.1| transcriptional regulator [Bacillus licheniformis ATCC 14580]
gi|52003561|gb|AAU23503.1| probable transcriptional regulator [Bacillus licheniformis ATCC
14580]
Length = 220
Score = 36.4 bits (83), Expect = 1.2, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R +++ + + ++AE IS + + L+ L G+VE V G V +
Sbjct: 23 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPGSATRVAPLNREE 82
Query: 72 QITILDVVKATE 83
V A
Sbjct: 83 AEHAFTVTAALH 94
>gi|301631285|ref|XP_002944730.1| PREDICTED: acetate operon repressor-like [Xenopus (Silurana)
tropicalis]
Length = 247
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
IR L A H R++++A+A ++ ++LQ LV+ G++
Sbjct: 41 AIRALKLMAQHAPDGLRLTELAQALGLTRPTAHRLLQALVQEGMLVRQAA 90
>gi|300769980|ref|ZP_07079859.1| LacI family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762456|gb|EFK59273.1| LacI family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33861]
Length = 368
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 12/124 (9%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV----------RGRRGG 63
L+ A+ + P I +IA IS + + L G+V T+
Sbjct: 29 LIQIAMKKEKPATIKEIARKLKISPSTVSRALNDHPSIGLVTTMRVKKMAEEMNYEPNQT 88
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--AFFDV 121
+ TI V+ + E FF A + + + A
Sbjct: 89 AIFFKQRKTFTIGVVLPSLSEPFFSAAISEIENFANERKYTVIMGQSMDDAERELRILQT 148
Query: 122 LTQY 125
L ++
Sbjct: 149 LKKH 152
>gi|322371751|ref|ZP_08046294.1| transcription repressor [Haladaptatus paucihalophilus DX253]
gi|320548636|gb|EFW90307.1| transcription repressor [Haladaptatus paucihalophilus DX253]
Length = 223
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/117 (11%), Positives = 38/117 (32%), Gaps = 3/117 (2%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
DY ++ + + P S+IAE ++ + +++ L G+++ + + +
Sbjct: 8 DY-LKAIYTLQKEDGGPVATSEIAEYLGVTPPTVTSMIEKLTDRGLLDREKYKGVELTPE 66
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ +L + ++ E + + + D L
Sbjct: 67 GETVALEVLRHHRLL--ESYLTEHLDYSWSEVHEEADRLEHHISEEFERRVADALGN 121
>gi|227538430|ref|ZP_03968479.1| LacI family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33300]
gi|227241712|gb|EEI91727.1| LacI family transcriptional regulator [Sphingobacterium
spiritivorum ATCC 33300]
Length = 368
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 12/124 (9%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV----------RGRRGG 63
L+ A+ + P I +IA IS + + L G+V T+
Sbjct: 29 LIQIAMKKEKPATIKEIARKLKISPSTVSRALNDHPSIGLVTTMRVKKMAEEMNYEPNQT 88
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN--AFFDV 121
+ TI V+ + E FF A + + + A
Sbjct: 89 AIFFKQRKTFTIGVVLPSLSEPFFSAAISEIENFANERKYTVIMGQSMDDAERELRILQT 148
Query: 122 LTQY 125
L ++
Sbjct: 149 LKKH 152
>gi|210623268|ref|ZP_03293685.1| hypothetical protein CLOHIR_01635 [Clostridium hiranonis DSM 13275]
gi|210153669|gb|EEA84675.1| hypothetical protein CLOHIR_01635 [Clostridium hiranonis DSM 13275]
Length = 150
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 14/116 (12%), Positives = 36/116 (31%), Gaps = 15/116 (12%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP--------- 69
+ D + + + ++ + + ++ L GI+ + L R
Sbjct: 19 LQEDGRISMKDLGKLIGLTSPAVSERIKRLENCGIISGYKAIINPDALGRNIKAFIHISL 78
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ + ++ + + EC DC L VL + + +V+
Sbjct: 79 PGSQSYAEFLENAKSDPRIVECHHITGDDCS------LLKVLVRDMQELENVIDSI 128
>gi|52785729|ref|YP_091558.1| hypothetical protein BLi01972 [Bacillus licheniformis ATCC 14580]
gi|52348231|gb|AAU40865.1| putative protein [Bacillus licheniformis ATCC 14580]
Length = 234
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R +++ + + ++AE IS + + L+ L G+VE V G V +
Sbjct: 37 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPGSATRVAPLNREE 96
Query: 72 QITILDVVKATE 83
V A
Sbjct: 97 AEHAFTVTAALH 108
>gi|302534567|ref|ZP_07286909.1| IclR family transcriptional regulator [Streptomyces sp. C]
gi|302443462|gb|EFL15278.1| IclR family transcriptional regulator [Streptomyces sp. C]
Length = 252
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
Y +RVL + H QIA + + L +L L + G V
Sbjct: 16 YALRVLETISRHTGG-VTDVQIARETGLPAVHLAPMLLMLRREGYV 60
>gi|319645865|ref|ZP_08000095.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
gi|317391615|gb|EFV72412.1| transcriptional regulator [Bacillus sp. BT1B_CT2]
Length = 221
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R +++ + + ++AE IS + + L+ L G+VE V G V +
Sbjct: 24 RAIVHLELKPEERLHDQELAEQFGISRTPVREALKRLEDEGLVEAVPGSATRVAPLNREE 83
Query: 72 QITILDVVKATE 83
V A
Sbjct: 84 AEHAFTVTAALH 95
>gi|239941508|ref|ZP_04693445.1| IclR family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
gi|239987972|ref|ZP_04708636.1| IclR family transcriptional regulator [Streptomyces roseosporus
NRRL 11379]
Length = 250
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
Y +RVL + H + +QI+ + L +L L + G V
Sbjct: 14 YALRVLESVSKHGNG-VTDAQISRETGLPTGHLASLLLTLRREGYV 58
>gi|296131327|ref|YP_003638577.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM
20109]
gi|296023142|gb|ADG76378.1| transcriptional regulator, MarR family [Cellulomonas flavigena DSM
20109]
Length = 164
Score = 36.4 bits (83), Expect = 1.3, Method: Composition-based stats.
Identities = 16/112 (14%), Positives = 35/112 (31%), Gaps = 13/112 (11%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
DY +VL + ++ D R+ +A ++ L +I+ L G V G
Sbjct: 41 SLADY--QVLAWLSMAPDRTRRMRDLAARADVTLSHLSRIVARLEDRGWVRRRPEPTDGR 98
Query: 65 RLCRPADQ-----------ITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
+ +V + + + A ++ + +C
Sbjct: 99 TTLATLTDAGWAKVVATAPCHVTEVRRRVFDGLTPEQVAALDEVSRHITTAC 150
>gi|120406178|ref|YP_956007.1| regulatory proteins IclR [Mycobacterium vanbaalenii PYR-1]
gi|119958996|gb|ABM16001.1| regulatory protein, IclR [Mycobacterium vanbaalenii PYR-1]
Length = 316
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TD +RVL + A H +S++A +++ I+ L AG + +
Sbjct: 14 TDRVVRVLDFLARHPQERFGVSELARRVDLTKPTCLGIVTSLRDAGYLVRDPADKT---Y 70
Query: 67 CRPADQITILD 77
IT+
Sbjct: 71 RLGPSLITLGH 81
>gi|291298293|ref|YP_003509571.1| transcriptional regulator TrmB [Stackebrandtia nassauensis DSM
44728]
gi|290567513|gb|ADD40478.1| transcriptional regulator, TrmB [Stackebrandtia nassauensis DSM
44728]
Length = 140
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRG 59
++Y R L + AI + R+ ++A+ + + + +++ L KAG E
Sbjct: 37 SEY--RALCHLAISDGGRLRMQELADRTGLDQSSVSRLVHRLEKAGFAERSHS 87
>gi|241663977|ref|YP_002982337.1| IclR family transcriptional regulator [Ralstonia pickettii 12D]
gi|240866004|gb|ACS63665.1| transcriptional regulator, IclR family [Ralstonia pickettii 12D]
Length = 256
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
RVLM A + P ++ E + + L++ + L + G V G
Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAGTYAP 75
>gi|309781432|ref|ZP_07676168.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA]
gi|308919845|gb|EFP65506.1| transcriptional regulator, IclR family [Ralstonia sp. 5_7_47FAA]
Length = 256
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 12 RVLMYCA--IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
RVLM A + P ++ E + + L++ + L + G V G
Sbjct: 22 RVLMVLATIARHGRPVAARELVELTGLPQSTLYRQVAMLKRWGFVLESAGTYAP 75
>gi|291444952|ref|ZP_06584342.1| IclR-family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
gi|291347899|gb|EFE74803.1| IclR-family transcriptional regulator [Streptomyces roseosporus
NRRL 15998]
Length = 252
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 9 YGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
Y +RVL + H + +QI+ + L +L L + G V
Sbjct: 16 YALRVLESVSKHGNG-VTDAQISRETGLPTGHLASLLLTLRREGYV 60
>gi|284034640|ref|YP_003384571.1| IclR family transcriptional regulator [Kribbella flavida DSM
17836]
gi|283813933|gb|ADB35772.1| transcriptional regulator, IclR family [Kribbella flavida DSM
17836]
Length = 252
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+ RT +RVL + A P + +IA A + + +L+ ++ G V
Sbjct: 8 STRT---LRVLTFLATQPG-PVPMERIASAVGLPRSSTYHLLRAMIDEGFV 54
>gi|186471600|ref|YP_001862918.1| AraC family transcriptional regulator [Burkholderia phymatum
STM815]
gi|184197909|gb|ACC75872.1| transcriptional regulator, AraC family [Burkholderia phymatum
STM815]
Length = 350
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP-LVKAGIVETVRGRRGGVRLCRPA 70
R ++ H P ++ +A+ +S L ++ K+ + R +
Sbjct: 241 RAILLMEQHIGQPLSLADLAQRLEMSVRQLERLFAAETGKSPHAYGRQIRIRMASWLLTS 300
Query: 71 DQITILDV 78
T+ D+
Sbjct: 301 SDRTVADI 308
>gi|145296508|ref|YP_001139329.1| hypothetical protein cgR_2419 [Corynebacterium glutamicum R]
gi|140846428|dbj|BAF55427.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 164
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR-----------RG 62
+ ++ + R+S++AE ++ L +++ L KAG V+ V
Sbjct: 53 MAQISMAPERRVRMSELAELSDMTLSHLSRVVTRLEKAGWVKRVPDPDDGRATVAVLTDS 112
Query: 63 GVRLCRPADQITILDVVKATEESFFVAE 90
G + + +V + + E
Sbjct: 113 GWEKVKATAPGHVKEVRRLVFDDLTPEE 140
>gi|134300310|ref|YP_001113806.1| signal-transduction protein [Desulfotomaculum reducens MI-1]
gi|134053010|gb|ABO50981.1| putative signal-transduction protein with CBS domains
[Desulfotomaculum reducens MI-1]
Length = 211
Score = 36.4 bits (83), Expect = 1.4, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 7/77 (9%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+KR + ++ + ND P QIAE ++ L L L AG +E
Sbjct: 1 MELSKRQE----TIIEI-VKNDGPITGEQIAERLNLTRATLRPDLSILTMAGFLEA--RP 53
Query: 61 RGGVRLCRPADQITILD 77
R G + +
Sbjct: 54 RVGYYYNGKTADRILAE 70
>gi|228950351|ref|ZP_04112518.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228809309|gb|EEM55763.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
Length = 301
Score = 36.4 bits (83), Expect = 1.5, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVRGRR 61
K + I ++Y H +S++A ++ L ++ Q + + +R
Sbjct: 169 KFSRLAIEAMIYIGEHYIEEITVSEVANHLAVNRSHLSRVFQNHFGMSMKDWIIRMRINH 228
Query: 62 GGVRLCRPAD 71
L +
Sbjct: 229 AAYLLSMTNE 238
>gi|296269722|ref|YP_003652354.1| IclR family transcriptional regulator [Thermobispora bispora DSM
43833]
gi|296092509|gb|ADG88461.1| transcriptional regulator, IclR family [Thermobispora bispora DSM
43833]
Length = 247
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/134 (10%), Positives = 41/134 (30%), Gaps = 32/134 (23%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+ + P ++A A + + +L+ LV G + +
Sbjct: 14 ALH-LLDAVASGERPATAKELARAVGLPLPTTYHLLRTLVHEGYL------------RKL 60
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD--VLT---- 123
D T+ + + A + + + + ++R + L+
Sbjct: 61 EDGYTLGERLTALTQRGSMLTVLS------------RVRPIMRAVRDELRGACYLSLYSH 108
Query: 124 -QYSIECLVRNRSS 136
+ + +V + +
Sbjct: 109 GEIKLVDIVDSPEA 122
>gi|257386279|ref|YP_003176052.1| TrmB family transcriptional regulator [Halomicrobium mukohataei DSM
12286]
gi|257168586|gb|ACV46345.1| transcriptional regulator, TrmB [Halomicrobium mukohataei DSM
12286]
Length = 352
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/135 (12%), Positives = 47/135 (34%), Gaps = 5/135 (3%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
Y + S+I++ +S+ +++ I + L + G V+ R ++
Sbjct: 22 TYLTVLEQGELTASEISDVTGVSKRYVYSISESLEERGFVDVDDHVVPTKVRARNPSEVI 81
Query: 75 ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL-RKALNAFFDVLTQYSI----EC 129
L + TE ++E + + + + ++ + D + ++ E
Sbjct: 82 ELLTDELTEMEPALSERHSQTERNLQRFDVLKSRQTMIKRIRSYIADASNEITLSISYEQ 141
Query: 130 LVRNRSSIKKIFNAG 144
L ++ + G
Sbjct: 142 LPEVEDELRAAVDRG 156
>gi|312197113|ref|YP_004017174.1| IclR family transcriptional regulator [Frankia sp. EuI1c]
gi|311228449|gb|ADP81304.1| transcriptional regulator, IclR family [Frankia sp. EuI1c]
Length = 331
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 7/60 (11%), Positives = 19/60 (31%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A D ++ IA + +++ + ++ L + G + R +
Sbjct: 18 LASRPDESLTLADIARSVGVNKATVHPMVVALAQRGWLLRHPRRHTYRLGPSLVAAGRVA 77
>gi|254492253|ref|ZP_05105427.1| Ribonuclease BN-like family [Methylophaga thiooxidans DMS010]
gi|224462578|gb|EEF78853.1| Ribonuclease BN-like family [Methylophaga thiooxydans DMS010]
Length = 449
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 17/121 (14%), Positives = 41/121 (33%), Gaps = 9/121 (7%)
Query: 14 LMYCAI---HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ A +N P I Q+ E ++ + +L L G++ + G +
Sbjct: 332 MTVIAKRFCNNQPPLTIQQLEEQTGLTNNAVQDLLSNLESGGLLVELAGDETAYVPAQDI 391
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
I + ++ + + +D + ++L+ +A VL ++ L
Sbjct: 392 ASIRVAAIMHCLRTAEENSHFVVKSLVDED------VNALLQNISDAQAKVLGGMTLRDL 445
Query: 131 V 131
Sbjct: 446 A 446
>gi|149202478|ref|ZP_01879450.1| transcriptional regulator, AraC family protein [Roseovarius sp.
TM1035]
gi|149143760|gb|EDM31794.1| transcriptional regulator, AraC family protein [Roseovarius sp.
TM1035]
Length = 332
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 14/99 (14%), Positives = 28/99 (28%), Gaps = 3/99 (3%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPA 70
R + A H P ++++AE I+ L + + R R
Sbjct: 220 RAIDLMAQHMAAPLSMAEVAEDLGITPRHLERSFKRATGQNPTNYFRAMRMKAARQIVMY 279
Query: 71 DQITILDVVKATEE--SFFVAECFASHKIDCPLVGSCGL 107
T+ + +A S + + P +
Sbjct: 280 SNDTMAQIAEAVGYASSKVLVRHYRDAFGISPREDRQRI 318
>gi|146304862|ref|YP_001192178.1| signal transduction protein [Metallosphaera sedula DSM 5348]
gi|145703112|gb|ABP96254.1| putative signal transduction protein with CBS domains
[Metallosphaera sedula DSM 5348]
Length = 300
Score = 36.0 bits (82), Expect = 1.5, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + ++A+ E + I+ L G+V++ G GG A
Sbjct: 12 LLALIELYNRQKKMIKSKEVADMISKDEGTVRNIILSLKVLGLVDSKPGPNGGYLPTLKA 71
Query: 71 DQI 73
+
Sbjct: 72 YEF 74
>gi|134095851|ref|YP_001100926.1| putative transcriptional regulator [Herminiimonas arsenicoxydans]
gi|133739754|emb|CAL62805.1| Putative regulatory proteins IclR family [Herminiimonas
arsenicoxydans]
Length = 285
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 13/125 (10%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
T+ + R+L A ++ + R+ +A + + +IL L++ G+V
Sbjct: 17 TQSIERAARILREIASYSAHGLRLVDLARQLNLKRTTIHRILMCLIREGLVMQHP----- 71
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
R ++ ++ F + E C + A L
Sbjct: 72 -TTLRYMLGYSLFELGLTAASQFKLREI----CEPCLERIAKKTGH---TAFMTIRSELD 123
Query: 124 QYSIE 128
SI
Sbjct: 124 AISIA 128
>gi|302541391|ref|ZP_07293733.1| IclR-family transcriptional regulator [Streptomyces hygroscopicus
ATCC 53653]
gi|302459009|gb|EFL22102.1| IclR-family transcriptional regulator [Streptomyces
himastatinicus ATCC 53653]
Length = 264
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
+++L A D P R+ ++AE + ++ +LQ L+ G V T
Sbjct: 17 VQLLEVLAARGDQPARLRELAEELDVPRSSMYALLQTLIDRGWVRT 62
>gi|297197646|ref|ZP_06915043.1| L-asparagine operon repressor [Streptomyces sviceus ATCC 29083]
gi|197715756|gb|EDY59790.1| L-asparagine operon repressor [Streptomyces sviceus ATCC 29083]
Length = 245
Score = 36.0 bits (82), Expect = 1.6, Method: Composition-based stats.
Identities = 15/144 (10%), Positives = 36/144 (25%), Gaps = 12/144 (8%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
DY L+ H + P + L +L + +
Sbjct: 90 TFGDYAASDLLEVRRHVEIPVAGYAALRRTPENLDHLAHLLDRMERETDTTAWVAMDTLF 149
Query: 65 RLCRPADQIT------ILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR----KA 114
L I ++ A + + +++ A
Sbjct: 150 HLAVAEAAQNPVFRRVIEEIRDALARQSAFLNELGGRREQSNREHRAIVEALIDGSEHDA 209
Query: 115 LNAFFDVLTQY--SIECLVRNRSS 136
+ A L + ++ +VR+ ++
Sbjct: 210 VEAMSHHLDRVETTLTDIVRSSNA 233
>gi|313126392|ref|YP_004036662.1| transcriptional regulator, contains c-terminal cbs domains
[Halogeometricum borinquense DSM 11551]
gi|312292757|gb|ADQ67217.1| predicted transcriptional regulator, contains C-terminal CBS
domains [Halogeometricum borinquense DSM 11551]
Length = 177
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LTALINLYRQTEDAVKGEDIAEEVNRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTANA 73
Query: 71 DQ 72
+
Sbjct: 74 YE 75
>gi|291299384|ref|YP_003510662.1| AsnC family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290568604|gb|ADD41569.1| transcriptional regulator, AsnC family [Stackebrandtia nassauensis
DSM 44728]
Length = 165
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 10/97 (10%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR--------GRRG 62
+R+L A+H D ++Q+A+ +S + + +Q + + GI+ G
Sbjct: 25 LRLLA--ALHADPRISMTQLAKQVSMSAPAVTERVQRMQRTGIIVGFHMDVDPAALGMPV 82
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDC 99
+ + +++A ++ V EC DC
Sbjct: 83 TALVRIKPGPAQLPKLIEAVQKMPQVTECHRITGEDC 119
>gi|110668555|ref|YP_658366.1| transcriptional regulator [Haloquadratum walsbyi DSM 16790]
gi|109626302|emb|CAJ52760.1| probable transcriptional regulator [Haloquadratum walsbyi DSM
16790]
Length = 177
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 25/62 (40%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ ++ + IA+ + + +Q L +VE V G +GG + A
Sbjct: 14 LTALINLHREDEEAVKGETIADEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTANA 73
Query: 71 DQ 72
+
Sbjct: 74 YE 75
>gi|291451917|ref|ZP_06591307.1| transcriptional regulator [Streptomyces albus J1074]
gi|291354866|gb|EFE81768.1| transcriptional regulator [Streptomyces albus J1074]
Length = 220
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 30/81 (37%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R ++ A+ + ++A IS + + + L+ L G+V GR V D
Sbjct: 26 RAILTGALAPGAEYSLRELAGMLDISFIPIREALRTLEGEGLVVMRPGRSAVVAPLGLDD 85
Query: 72 QITILDVVKATEESFFVAECF 92
I + +A E C
Sbjct: 86 LRGIYRLRRALEPEIAARSCL 106
>gi|228918505|ref|ZP_04081948.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228841121|gb|EEM86320.1| MSM (Multiple sugar metabolism) operon regulatory protein [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
Length = 301
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 3/70 (4%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP---LVKAGIVETVRGRR 61
K + I ++Y H +S +A ++ L ++ Q + + +R
Sbjct: 169 KFSRLAIEAMIYIGEHYIEEITVSDVANHLAVNRSHLSRVFQNHFGMSMKDWIIRMRINH 228
Query: 62 GGVRLCRPAD 71
L +
Sbjct: 229 AAYLLSMTNE 238
>gi|331696230|ref|YP_004332469.1| ArsR family transcriptional regulator [Pseudonocardia dioxanivorans
CB1190]
gi|326950919|gb|AEA24616.1| transcriptional regulator, ArsR family [Pseudonocardia
dioxanivorans CB1190]
Length = 290
Score = 36.0 bits (82), Expect = 1.7, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 23/82 (28%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L++ + ++AE IS+ ++ L G + R + PA
Sbjct: 47 LLHAVAAGGRQIPVGELAEQLGISQSTCSHHVRKLADVGFLTVRRDGTTSLVAVNPACCT 106
Query: 74 TILDVVKATEESFFVAECFASH 95
+ A C
Sbjct: 107 GLPHAADAVMGLLAPRPCCPDD 128
>gi|147920495|ref|YP_685711.1| hypothetical protein RCIX1061 [uncultured methanogenic archaeon
RC-I]
gi|110621107|emb|CAJ36385.1| conserved hypothetical protein [uncultured methanogenic archaeon
RC-I]
Length = 142
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I ++ + A +ND+ IS+I+E +S + L L+ ++E + + G V+ R A
Sbjct: 13 ITIVDFLAENNDFAYTISEISEFTGLSRPTVHSKLPMLIHNRLIE-IDSQAGHVKTYRLA 71
Query: 71 DQITILDVVKATEESFFV 88
+ ++ A + F+
Sbjct: 72 RNEFVGTLITAVYQHSFL 89
>gi|145595859|ref|YP_001160156.1| helix-turn-helix domain-containing protein [Salinispora tropica
CNB-440]
gi|145305196|gb|ABP55778.1| transcriptional regulator, AraC family [Salinispora tropica
CNB-440]
Length = 232
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV-ETVRGRRGGVRLCRPAD 71
V+ + H D P ++++A SE L ++ L G+ R R A
Sbjct: 8 VMAHLERHLDQPVDVAELARIAATSEYHLRRLFSALAGIGLSEYVRRRRLTVAAAEVLAG 67
Query: 72 QITILDV 78
+ ++LD+
Sbjct: 68 ERSLLDI 74
>gi|72162065|ref|YP_289722.1| iron dependent repressor [Thermobifida fusca YX]
gi|71915797|gb|AAZ55699.1| iron dependent repressor [Thermobifida fusca YX]
Length = 229
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 22/115 (19%), Positives = 44/115 (38%), Gaps = 3/115 (2%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
DY ++V+ P IS++AE +S + +L+ L + G+V R G VRL
Sbjct: 14 DY-VKVIYDLQERGSGPVTISRVAERLAVSNSSVSGMLRKLGELGLV--DHQRYGDVRLT 70
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
D++ + + + ++ E + V + + + L
Sbjct: 71 PTGDKVALAVLRRHRLIELYLVEELGYSWDEVHDEAEVLEHVVSDRFVERIAERL 125
>gi|55978356|ref|YP_145412.1| response regulator [Thermus thermophilus HB8]
gi|55773529|dbj|BAD71969.1| response regulator [Thermus thermophilus HB8]
Length = 217
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
RVL P ++AEA +S + ++ L+ L + G V G R R
Sbjct: 156 RVLALL--QGGKPLTAEEVAEALGLSRVTAWRYLEALRREGRVRAEPRYGGTGRPSRAYR 213
>gi|290960127|ref|YP_003491309.1| IclR family transcriptional regulator [Streptomyces scabiei
87.22]
gi|260649653|emb|CBG72768.1| putative IclR-family transcriptional regulator [Streptomyces
scabiei 87.22]
Length = 252
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+RVL A H ++IA + L +L+ L + G V
Sbjct: 17 ALRVLETVARHAGG-VTDAEIARRTGVDSERLTALLRMLRREGYV 60
>gi|217968106|ref|YP_002353612.1| hypothetical protein Dtur_1726 [Dictyoglomus turgidum DSM 6724]
gi|217337205|gb|ACK42998.1| conserved hypothetical protein [Dictyoglomus turgidum DSM 6724]
Length = 195
Score = 36.0 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
M LT+R ++ L N P ++IA+ +S + I+Q L K G VE V
Sbjct: 1 MSLTERRRQFLQALENLYKKNKRPIHYAEIAKELSVSPATAYDIMQALYKNGYVEAVY 58
>gi|330834038|ref|YP_004408766.1| signal transduction protein [Metallosphaera cuprina Ar-4]
gi|329566177|gb|AEB94282.1| signal transduction protein [Metallosphaera cuprina Ar-4]
Length = 300
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + ++A+ E + I+ L G+V++ G GG A
Sbjct: 12 LLALIELYNRQKKMIKSKEVADMISKDEGTVRNIILSLKVLGLVDSKPGPNGGYLPTLKA 71
Query: 71 DQI 73
+
Sbjct: 72 YEF 74
>gi|119385772|ref|YP_916827.1| regulatory proteins, IclR [Paracoccus denitrificans PD1222]
gi|119376367|gb|ABL71131.1| regulatory protein, IclR [Paracoccus denitrificans PD1222]
Length = 251
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
G+ +L A +D + +IAEA + + ++ L G + R + L
Sbjct: 19 GVNILTAIA-RSDQGLSVREIAEAIGVERQTAYHLVHTLEDTGFIARDDQRNYRLGLRVG 77
Query: 70 ADQITILDVVKATEESFFVAECFA-SHKIDCPLVGSCG 106
A A + + A C +VG
Sbjct: 78 ALAEAFGRQFSAPDYMLPLVRGLATETGETCYVVGWWQ 115
>gi|226362782|ref|YP_002780560.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
gi|226241267|dbj|BAH51615.1| putative IclR family transcriptional regulator [Rhodococcus opacus
B4]
Length = 267
Score = 36.0 bits (82), Expect = 1.9, Method: Composition-based stats.
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG-GVRLCR 68
+R+L A H ++ +A+ IS F++L L + G+V+ + G + R
Sbjct: 18 AVRLLRELAAHPRTGATVTTLAKGVGISRPTAFRLLYSLERTGLVDRIDNNYILGWEMAR 77
Query: 69 PAD--QITILDVVKATEESFFVAECFASH 95
V +A +A+ F
Sbjct: 78 LGRRADPYAGLVARAQPLLQELADKFNES 106
>gi|78043639|ref|YP_360565.1| IclR family transcriptional regulator [Carboxydothermus
hydrogenoformans Z-2901]
gi|77995754|gb|ABB14653.1| transcriptional regulator, IclR family [Carboxydothermus
hydrogenoformans Z-2901]
Length = 261
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 10/48 (20%), Positives = 25/48 (52%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+ I++L Y + + + +++IA I++ +IL+ L+ +V
Sbjct: 15 VEMAIKILTYLSRYRNKNRTLAEIARDLNINKSSCHRILKVLLDYRLV 62
>gi|325672880|ref|ZP_08152574.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
gi|325556133|gb|EGD25801.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
Length = 298
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ ++ D I+++A+A +S + +L L G V R +R A
Sbjct: 16 VVAVIELLAGRDEACTIAEVADALGLSRSTVGAVLSSLDAHGWV----RRDADLRYRLGA 71
Query: 71 DQITILDVVK 80
+I + +
Sbjct: 72 RLASIGETAR 81
>gi|261250811|ref|ZP_05943385.1| melibiose operon regulatory protein [Vibrio orientalis CIP 102891]
gi|260937684|gb|EEX93672.1| melibiose operon regulatory protein [Vibrio orientalis CIP 102891]
Length = 338
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKA 51
+L Y A H++ P IAE + + + Q ++
Sbjct: 204 MLEYIATHHNMPLTTKAIAEHVGLHANYAMNVFQRTMQM 242
>gi|67078214|ref|YP_245834.1| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus
cereus E33L]
gi|66970520|gb|AAY60496.1| MSM (multiple sugar metabolism) operon regulatory protein [Bacillus
cereus E33L]
Length = 301
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQ 46
K + I ++Y H +S +A ++ L ++ Q
Sbjct: 169 KFSRLAIEAMIYIGKHYIEEITVSDVANHLAVNRSHLSRVFQ 210
>gi|169630560|ref|YP_001704209.1| IclR family regulatory protein [Mycobacterium abscessus ATCC
19977]
gi|169242527|emb|CAM63555.1| Putative regulatory protein, IclR family [Mycobacterium
abscessus]
Length = 296
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
++L + A P +++IAEA ++ ILQ L +AG + +
Sbjct: 11 AAQILDHLAGRPTLPLSMTEIAEAVGVNPASTLAILQALTEAGYIVRHPRHKT---YSIG 67
Query: 70 ADQITILDVVKATEESFFVAE 90
+ + E V
Sbjct: 68 PAMLITGHAARMRFEVADVVN 88
>gi|256391330|ref|YP_003112894.1| MarR family transcriptional regulator with acetyltransferase
activity [Catenulispora acidiphila DSM 44928]
gi|256357556|gb|ACU71053.1| transcriptional regulator, MarR family with acetyltransferase
activity [Catenulispora acidiphila DSM 44928]
Length = 322
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 23/63 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+RVL+ A + + +I E + +L +IL G+V R R
Sbjct: 39 VRVLLEIAHAGPEGSTVVRIREDLGLDPGYLSRILARFDSEGMVVKGRAADDARRGTVQL 98
Query: 71 DQI 73
+
Sbjct: 99 TER 101
>gi|76802081|ref|YP_327089.1| transcription regulator [Natronomonas pharaonis DSM 2160]
gi|76557946|emb|CAI49530.1| transcription regulator [Natronomonas pharaonis DSM 2160]
Length = 219
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 3/117 (2%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
DY I+ + D S++A+ ++ + +++ L + G+V+ R GVRL
Sbjct: 8 DY-IKAIYALQNDTDERVGTSELADYMDVTSPTVSSMIKKLEERGLVDREEYR--GVRLT 64
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ + + + F+ E D V + + L
Sbjct: 65 EEGEVVALEILRHHRLLEAFLTEHLDYDWADVHEEADRLEHHVSEELTERIAEALDN 121
>gi|33600781|ref|NP_888341.1| acyl-CoA dehydrogenase [Bordetella bronchiseptica RB50]
gi|33568381|emb|CAE32293.1| Putative acyl-CoA dehydrogenase [Bordetella bronchiseptica RB50]
Length = 782
Score = 35.7 bits (81), Expect = 2.0, Method: Composition-based stats.
Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 14/122 (11%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET-----VRGRRGGV 64
+R L ++++ A + + + L + GG
Sbjct: 515 ALRAL-------GGALSGARLSRAPRAAAPSMHAYYRALSRYSSAFALLADACMLALGGS 567
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVG--SCGLTSVLRKALNAFFDVL 122
R + D++ + V + F + L + AF VL
Sbjct: 568 LKRRERLSARLGDILAQMYLASAVLKRFEDDGRQAEDEPLAHWAVRDALYRLQQAFEGVL 627
Query: 123 TQ 124
Sbjct: 628 DN 629
>gi|20093126|ref|NP_619201.1| iron dependent repressor [Methanosarcina acetivorans C2A]
gi|19918464|gb|AAM07681.1| iron dependent repressor [Methanosarcina acetivorans C2A]
Length = 224
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
+Y + ++Y N P + QIAE +S + ++++ L G VE + +
Sbjct: 11 EY-LETILYLITKNQGPAKTKQIAEELNVSSPSVTEMIKKLHSMGFVEYKPYQGVELTEK 69
Query: 68 RPADQITI---LDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
+ + I V++ + +H+ C L +V L +D L
Sbjct: 70 GAEEAVRIKRKHQVLETFLADVLDFDRKEAHREACELE-----HAVSDSVLERLYDFLGN 124
>gi|307323164|ref|ZP_07602374.1| transcriptional regulator, AsnC family [Streptomyces
violaceusniger Tu 4113]
gi|306890653|gb|EFN21629.1| transcriptional regulator, AsnC family [Streptomyces
violaceusniger Tu 4113]
Length = 154
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 10/90 (11%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA- 70
R+L+ A I +AE +S + + L + G +++ R L P
Sbjct: 7 RILLALAADP--RATIVALAEQLGLSRNTVQARVARLEQGGALDSFERRITPKTLGHPLT 64
Query: 71 -------DQITILDVVKATEESFFVAECFA 93
Q + +V +A V E F
Sbjct: 65 AFVTARVHQHRLAEVSEALAGIDEVVEVFG 94
>gi|303228366|ref|ZP_07315200.1| putative transcriptional repressor CcpN [Veillonella atypica
ACS-134-V-Col7a]
gi|302516979|gb|EFL58887.1| putative transcriptional repressor CcpN [Veillonella atypica
ACS-134-V-Col7a]
Length = 215
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+KR + + + P S IAE ++ L L L G++E
Sbjct: 1 MKLSKRQE----AIAHIVREKG-PVTGSAIAEHLDVTRSALRSDLAVLTMIGVLEA--RP 53
Query: 61 RGGVRLCRPADQITILDVVK 80
G + + ++++
Sbjct: 54 NVGYYYVGLSPKDQTAEILR 73
>gi|289193273|ref|YP_003459214.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
sp. FS406-22]
gi|288939723|gb|ADC70478.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
sp. FS406-22]
Length = 145
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MH---LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M +TK+ ++ + P I ++A+ I L ++ L G+VET
Sbjct: 1 MKVEGITKK------IMEHL----KEPITIRELAKKLNIHPKNLDVKIRVLRDLGLVETK 50
Query: 58 RGRRGGVRLCR 68
+GR GGVRL +
Sbjct: 51 KGRNGGVRLTK 61
>gi|281356405|ref|ZP_06242897.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC
BAA-548]
gi|281317097|gb|EFB01119.1| transcriptional regulator, IclR family [Victivallis vadensis ATCC
BAA-548]
Length = 253
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 26/51 (50%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
R+L + + D P ++ ++AE IS I++ + + G V + RRG
Sbjct: 10 RILEHLSAAPDRPCQLGELAELLNISAPAAANIVRAMTELGYVRALGRRRG 60
>gi|187926341|ref|YP_001892686.1| conserved hypothetical protein [Ralstonia pickettii 12J]
gi|241665828|ref|YP_002984187.1| hypothetical protein Rpic12D_4272 [Ralstonia pickettii 12D]
gi|309778859|ref|ZP_07673630.1| transcriptional regulator, arsr family [Ralstonia sp. 5_7_47FAA]
gi|187728095|gb|ACD29259.1| conserved hypothetical protein [Ralstonia pickettii 12J]
gi|240867855|gb|ACS65515.1| conserved hypothetical protein [Ralstonia pickettii 12D]
gi|308922383|gb|EFP68009.1| transcriptional regulator, arsr family [Ralstonia sp. 5_7_47FAA]
Length = 186
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 24/147 (16%), Positives = 43/147 (29%), Gaps = 21/147 (14%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+Y A P +IAE+ S + L+ L +V
Sbjct: 30 IYALLYAAR---EPINADEIAESLGFSRSNVSIGLKELESWKLVRLSHKPGDRREYFSAP 86
Query: 71 DQITILDVVKATEESFF--------------VAECFASHKIDCPLVGSCGLTSVLRKALN 116
D I + + E + E + ++ N
Sbjct: 87 DD--IWTIFRTLAEERRKREIDPTLSLLRDVMLESPTDPDDRHAQARMKQMYELITLMTN 144
Query: 117 AFFDV--LTQYSIECLVRNRSSIKKIF 141
F DV L S++ L++ + + K+
Sbjct: 145 WFDDVQKLDAESLQQLMKMGAKVHKLL 171
>gi|169830682|ref|YP_001716664.1| signal-transduction protein [Candidatus Desulforudis audaxviator
MP104C]
gi|169637526|gb|ACA59032.1| putative signal-transduction protein with CBS domains [Candidatus
Desulforudis audaxviator MP104C]
Length = 213
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 5/60 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M LTKR + ++ + ++ P QIA+ ++ L L L AG++E
Sbjct: 1 MELTKRQE----AILEI-VRSNGPITSEQIADRLSLTRATLRPDLAILTMAGLLEARPRV 55
>gi|99078650|ref|YP_611908.1| AsnC family transcriptional regulator [Ruegeria sp. TM1040]
gi|99035788|gb|ABF62646.1| transcriptional regulator, AsnC family [Ruegeria sp. TM1040]
Length = 152
Score = 35.7 bits (81), Expect = 2.1, Method: Composition-based stats.
Identities = 18/102 (17%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L R R+L D + +AE+ +S L++ ++ L +AG+++
Sbjct: 1 MRLDDRDR---RILTLL--QEDSRMSNADLAESVGMSASALWRRVRSLEEAGVIKRYGAV 55
Query: 61 RGGVRLC-----------RPADQITILDVVKATEESFFVAEC 91
+ + + ++A E + V EC
Sbjct: 56 VVPQAMGLNFEALVQVNLTRHAPEHLQEFIRAVEGNPHVVEC 97
>gi|259417331|ref|ZP_05741250.1| transcriptional regulator, AraC family [Silicibacter sp. TrichCH4B]
gi|259346237|gb|EEW58051.1| transcriptional regulator, AraC family [Silicibacter sp. TrichCH4B]
Length = 339
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKIL 45
+R + ++P ++IAE IS L ++
Sbjct: 231 VRAMAIMEEFIEHPLPTAEIAERAGISVRHLERLF 265
>gi|284032339|ref|YP_003382270.1| ROK family protein [Kribbella flavida DSM 17836]
gi|283811632|gb|ADB33471.1| ROK family protein [Kribbella flavida DSM 17836]
Length = 385
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+ V+ A+ +D P ++++A +S + + L++ G V V G
Sbjct: 18 AVAVMR--ALRDDKPLTLTELARRTGLSRASTEDVARELIERGWVAEVEPTVG 68
>gi|163856810|ref|YP_001631108.1| IclR family transcriptional regulator [Bordetella petrii DSM
12804]
gi|163260538|emb|CAP42840.1| transcriptional regulator, IclR family [Bordetella petrii]
Length = 245
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
+ VL A H D P I +A+ +++ L++ + L + G V G G
Sbjct: 14 LYVLASLARH-DGPLSIQALADKTGLAQSTLYRQVALLKRWGFVAEQGGEYGP 65
>gi|118473315|ref|YP_886483.1| glycerol operon regulatory protein [Mycobacterium smegmatis str.
MC2 155]
gi|118174602|gb|ABK75498.1| glycerol operon regulatory protein [Mycobacterium smegmatis str.
MC2 155]
Length = 248
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+ D +R+L + +IA A ++ + +++ L+ G+V +
Sbjct: 3 QAVDRALRILTVL--QGGRRMSLGEIASAIELAPSTVHGLVRTLLAHGMV---QQELDSG 57
Query: 65 RLCRPADQITILDVV 79
R + + +V
Sbjct: 58 RYRLGPATLRLGNVY 72
>gi|311106752|ref|YP_003979605.1| transcriptional regulator family protein 20 [Achromobacter
xylosoxidans A8]
gi|310761441|gb|ADP16890.1| bacterial transcriptional regulator family protein 20
[Achromobacter xylosoxidans A8]
Length = 277
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ VL + A +P ++Q+A+ + + L ++L + +AG V G
Sbjct: 31 ALVVLDHLARAQ-HPPTLAQLAQRLDMPKTTLMRLLAAMQRAGYV-AATPTENGFVPGPQ 88
Query: 70 ADQITILDVV 79
A + + +
Sbjct: 89 AATLALATLR 98
>gi|150375852|ref|YP_001312448.1| AsnC family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150030399|gb|ABR62515.1| putative transcriptional regulator, AsnC family [Sinorhizobium
medicae WSM419]
Length = 217
Score = 35.7 bits (81), Expect = 2.2, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L AI D +AE +S + L+ L KAGIV R R+ A
Sbjct: 8 LRILE--AIQADGRITKLALAEKAGLSPTPCWMRLRKLEKAGIVTGYHARVALRRVAPVA 65
Query: 71 D---QITILD--------VVKATEESFFVAEC 91
+IT+ + +A + C
Sbjct: 66 SVMMEITLGNHRQADFDRFERAIAAIPEIVAC 97
>gi|239980060|ref|ZP_04702584.1| GntR family transcriptional regulator [Streptomyces albus J1074]
Length = 210
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 17/81 (20%), Positives = 30/81 (37%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R ++ A+ + ++A IS + + + L+ L G+V GR V D
Sbjct: 16 RAILTGALAPGAEYSLRELAGMLDISFIPIREALRTLEGEGLVVMRPGRSAVVAPLGLDD 75
Query: 72 QITILDVVKATEESFFVAECF 92
I + +A E C
Sbjct: 76 LRGIYRLRRALEPEIAARSCL 96
>gi|302535064|ref|ZP_07287406.1| MarR family transcriptional regulator [Streptomyces sp. C]
gi|302443959|gb|EFL15775.1| MarR family transcriptional regulator [Streptomyces sp. C]
Length = 155
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 8/83 (9%)
Query: 9 YG----IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
Y + + + A+ + S++AE +++ +I+ L K G V GG
Sbjct: 36 YADLRPLHGMAFQALKGPG-STASELAERLGVTKQAAGQIVDDLEKRGYVRREPHPGGGR 94
Query: 65 R---LCRPADQITILDVVKATEE 84
R + PA + + +
Sbjct: 95 RKLVVLTPAAEQHLATAGRVLHG 117
>gi|218781003|ref|YP_002432321.1| uridylate kinase [Desulfatibacillum alkenivorans AK-01]
gi|218762387|gb|ACL04853.1| uridylate kinase [Desulfatibacillum alkenivorans AK-01]
Length = 238
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 17/119 (14%), Positives = 31/119 (26%), Gaps = 3/119 (2%)
Query: 13 VLMYCAIHNDYPNRI-SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
L P R+ S IA L + L+ L K +V G A
Sbjct: 87 ALCDALEKQGMPTRVQSAIAMHEIAEPYILRRALRHLEKKRVVIFAAGTGNPYFTTDTAA 146
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ--YSIE 128
+ ++ +C +C + ++ L + S+
Sbjct: 147 VLRAQEIHAEILFKATKVDCLFDKDPECNSDAQPITSITHKQVLERELRAMDTTATSLA 205
>gi|312141856|ref|YP_004009192.1| iclr family transcriptional regulator [Rhodococcus equi 103S]
gi|311891195|emb|CBH50514.1| putative IclR family transcriptional regulator [Rhodococcus equi
103S]
Length = 298
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ ++ D I+++A+A +S + +L L G V R +R A
Sbjct: 16 VVAVIELLAGRDEACTIAEVADALGLSRSTVGAVLGSLDAHGWV----RRDADLRYRLGA 71
Query: 71 DQITILDVVK 80
+I + +
Sbjct: 72 RLASIGEAAR 81
>gi|152981479|ref|YP_001355355.1| IclR family transcriptional regulator [Janthinobacterium sp.
Marseille]
gi|151281556|gb|ABR89966.1| Transcriptional regulator, IclR family [Janthinobacterium sp.
Marseille]
Length = 257
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
IR + + A H R+ +A + ++L+ LV G++
Sbjct: 16 AIRAMKHIARHTPGGMRLVDLAREMELEHPTAHRMLKALVAEGML 60
>gi|284042041|ref|YP_003392381.1| IclR family transcriptional regulator [Conexibacter woesei DSM
14684]
gi|283946262|gb|ADB49006.1| transcriptional regulator, IclR family [Conexibacter woesei DSM
14684]
Length = 266
Score = 35.7 bits (81), Expect = 2.3, Method: Composition-based stats.
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ +LM A ++ +I+E I + +L L G+V G R
Sbjct: 27 AVGILMAIA-KSEAGLTTREISEQVGIGRQATYHLLHTLTATGMVTRAGG------GSRY 79
Query: 70 ADQITILDVVKATEESFFVAECFAS 94
+ + + +A +E A
Sbjct: 80 VLGLRVGTLAEAFSRQLAPSEHLAP 104
>gi|209695588|ref|YP_002263517.1| fatty acid metabolism regulator [Aliivibrio salmonicida LFI1238]
gi|208009540|emb|CAQ79832.1| fatty acid metabolism regulator protein [Aliivibrio salmonicida
LFI1238]
Length = 280
Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 12/98 (12%), Positives = 30/98 (30%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
+++E ++ L ++LQ L + G + G+ V + ILD + ++
Sbjct: 35 RELSELIGVTRTTLREVLQRLSRDGWLTIQHGKPTKVNDYMETSGLHILDTLMTLVDANN 94
Query: 88 VAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ + + L +
Sbjct: 95 ATSIVEDLLAARTNISCIFMRQAFKTNKEGSLRTLDRV 132
>gi|187479582|ref|YP_787607.1| hypothetical protein BAV3112 [Bordetella avium 197N]
gi|115424169|emb|CAJ50722.1| conserved hypothetical protein [Bordetella avium 197N]
Length = 190
Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 21/157 (13%), Positives = 45/157 (28%), Gaps = 39/157 (24%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L++ + P IAEA S + L+ L +V+ +
Sbjct: 30 IYALLFL---SPRPLHADDIAEALGFSRSNVSMGLKELQSWRLVKLMHQVGDRREYFETP 86
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK---------ALNAFFDV 121
+ ++ + E E + L L + A ++
Sbjct: 87 KD--VWEIFRILMEEKRKREIDPTLT---------LLREALLEPSSEANEVHAQQRMREM 135
Query: 122 LTQY----------------SIECLVRNRSSIKKIFN 142
L +++ L+R S ++K+ +
Sbjct: 136 LELIELSTGWFDEVQRLPPETLQNLMRLGSRVQKVLS 172
>gi|284989054|ref|YP_003407608.1| MarR family transcriptional regulator [Geodermatophilus obscurus
DSM 43160]
gi|284062299|gb|ADB73237.1| transcriptional regulator, MarR family [Geodermatophilus obscurus
DSM 43160]
Length = 171
Score = 35.7 bits (81), Expect = 2.4, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 11/69 (15%)
Query: 2 HLTKRTDYGIR-----------VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
+T+R D + L A + ++AEA IS + + LV
Sbjct: 44 RITRRVDSALHRRHDLSLTGYEALRRIAEAPGERATMGEVAEALGISRAGVTSTVSRLVA 103
Query: 51 AGIVETVRG 59
G V R
Sbjct: 104 EGYVVRERS 112
>gi|291295685|ref|YP_003507083.1| transcriptional regulator, IclR family [Meiothermus ruber DSM
1279]
gi|290470644|gb|ADD28063.1| transcriptional regulator, IclR family [Meiothermus ruber DSM
1279]
Length = 880
Score = 35.7 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
LT +RVL Y A H + +++A S + +L LV G E
Sbjct: 6 KLTT-VQAALRVLAYLAEHPEG-VEAARLAAFLGKSLSTAYALLASLVSEGFAERDGSTY 63
Query: 62 GGVRLCRPADQITILD 77
+ + +
Sbjct: 64 RLSKNALAPSPNRLAE 79
>gi|19553711|ref|NP_601713.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|62391351|ref|YP_226753.1| MarR family regulatory protein [Corynebacterium glutamicum ATCC
13032]
gi|21325282|dbj|BAB99904.1| Transcriptional regulators [Corynebacterium glutamicum ATCC 13032]
gi|41326692|emb|CAF21174.1| Bacterial regulatory protein, MarR family [Corynebacterium
glutamicum ATCC 13032]
Length = 164
Score = 35.7 bits (81), Expect = 2.5, Method: Composition-based stats.
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 11/88 (12%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR-----------RG 62
+ ++ ++ R+S++AE ++ L +++ L KAG V+ V
Sbjct: 53 MAQISMAPEHRVRMSELAELSDMTLSHLSRVVTRLEKAGWVKRVPDPDDGRATVAVLTDS 112
Query: 63 GVRLCRPADQITILDVVKATEESFFVAE 90
G + + +V + + E
Sbjct: 113 GWEKVKATAPGHVKEVRRLVFDDLTPEE 140
>gi|322370374|ref|ZP_08044933.1| hypothetical protein ZOD2009_12827 [Haladaptatus paucihalophilus
DX253]
gi|320550082|gb|EFW91737.1| hypothetical protein ZOD2009_12827 [Haladaptatus paucihalophilus
DX253]
Length = 177
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 13/62 (20%), Positives = 24/62 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LTALVNLHRETEDAVKGEDIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTATA 73
Query: 71 DQ 72
+
Sbjct: 74 FE 75
>gi|256377189|ref|YP_003100849.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255921492|gb|ACU37003.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
43827]
Length = 180
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 2/86 (2%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+Y L + + D R+S++A S L +++ + G VE G
Sbjct: 67 TLFEY--LALSHISEAPDRRLRMSELAYLANGSLSRLSNVVKRFEQRGWVERSPDPADGR 124
Query: 65 RLCRPADQITILDVVKATEESFFVAE 90
V A
Sbjct: 125 YTLAALTDAGFAVVQAAAPTHLRAVR 150
>gi|300773006|ref|ZP_07082875.1| phosphomethylpyrimidine kinase [Sphingobacterium spiritivorum ATCC
33861]
gi|300759177|gb|EFK56004.1| phosphomethylpyrimidine kinase [Sphingobacterium spiritivorum ATCC
33861]
Length = 278
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 24/137 (17%), Positives = 45/137 (32%), Gaps = 10/137 (7%)
Query: 1 MH-LTKRTDYGIRVLMYCAIHNDYPN----RISQIAEACCISELFLFKILQPLVKAGIVE 55
M + Y VL + N I +A I + L I +K G+V
Sbjct: 28 MKTFSALGCYATSVLTALPVQNTQGVRSIYPIPDVAVREQIQTI-LDDIFPKAIKIGMVH 86
Query: 56 -TVRGRRGGVRLCRPADQITILD-VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
+ + L R + D V+ AT + E ++ + LT + +
Sbjct: 87 TSELVQIITDTLGRYPATPVVFDPVMVATSGHKLIEESTIRTLVEQLFPITTVLTPNMDE 146
Query: 114 ALNAFFDVLTQYSIECL 130
A A + +++ +
Sbjct: 147 A--AILAEMDVKTLDDM 161
>gi|184201732|ref|YP_001855939.1| MarR family transcriptional regulator [Kocuria rhizophila DC2201]
gi|183581962|dbj|BAG30433.1| putative MarR family transcriptional regulator [Kocuria rhizophila
DC2201]
Length = 209
Score = 35.3 bits (80), Expect = 2.6, Method: Composition-based stats.
Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TDY + H P +A A I+ ++ LV+AG V R G R+
Sbjct: 51 TDYS--AMALLMRHPMGPT---DLARALHITTASATAMVDRLVRAGHVVREPHRADGRRM 105
Query: 67 CRPADQITILDVVKATEESFFVAE 90
A + +V + + E
Sbjct: 106 TVRAVDHSRAEVTRHVMPMVEMVE 129
>gi|311898470|dbj|BAJ30878.1| putative IclR family transcriptional regulator [Kitasatospora
setae KM-6054]
Length = 273
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
R L A + P + Q A + + ++L+ L + G V
Sbjct: 7 RALTILASLGEGPASLEQAAARIGVHKSTALRLLRTLQEHGFVH 50
>gi|311109242|ref|YP_003982095.1| transcriptional regulator family protein 36 [Achromobacter
xylosoxidans A8]
gi|310763931|gb|ADP19380.1| bacterial transcriptional regulator family protein 36
[Achromobacter xylosoxidans A8]
Length = 250
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 6/72 (8%)
Query: 21 NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVK 80
N+ P ++ +AEA I + I+ L G + T+ R + DV
Sbjct: 22 NERPLSLTDLAEAAGIPKSTCHAIVSTLTARGYLYTLNRPRTLY------PTKRMYDVTS 75
Query: 81 ATEESFFVAECF 92
E
Sbjct: 76 DILAKDPFIEHV 87
>gi|226362775|ref|YP_002780553.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
gi|226241260|dbj|BAH51608.1| putative IclR family transcriptional regulator [Rhodococcus
opacus B4]
Length = 202
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+R+L A +S +A+A IS F++L + G+V
Sbjct: 17 AVRLLRELASRPRTGATVSTLAKAVGISRPTAFRLLHSFERTGLV 61
>gi|108801611|ref|YP_641808.1| IclR family transcriptional regulator [Mycobacterium sp. MCS]
gi|119870765|ref|YP_940717.1| regulatory proteins, IclR [Mycobacterium sp. KMS]
gi|108772030|gb|ABG10752.1| transcriptional regulator, IclR family [Mycobacterium sp. MCS]
gi|119696854|gb|ABL93927.1| regulatory protein, IclR [Mycobacterium sp. KMS]
Length = 306
Score = 35.3 bits (80), Expect = 2.7, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TD +R+L + A +S++A +++ I+ L +AG + +
Sbjct: 18 TDRVVRILDFLADRPQERFGVSELARRVGLTKPTCLGIVTALSEAGYLVRDPADKT---Y 74
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL-TQY 125
IT+ +A S ++ L S A A V+ +
Sbjct: 75 RLGPSLITLG--HRA----------QESMRVSPAAREQLRLLSARFGATAALSAVVDDRI 122
Query: 126 SIECLVR 132
++ LV
Sbjct: 123 TLLDLVA 129
>gi|21228473|ref|NP_634395.1| hypothetical protein MM_2371 [Methanosarcina mazei Go1]
gi|20906955|gb|AAM32067.1| conserved protein [Methanosarcina mazei Go1]
Length = 291
Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+ D + +IAE + + +Q L +VE V G +GG + A
Sbjct: 11 IIALINLQRQKDRAIKGEEIAEVIQRNPGTVRNQMQLLKALALVEGVPGPKGGYKPTGAA 70
Query: 71 DQ 72
Sbjct: 71 YD 72
>gi|170092415|ref|XP_001877429.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647288|gb|EDR11532.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 2289
Score = 35.3 bits (80), Expect = 2.8, Method: Composition-based stats.
Identities = 19/156 (12%), Positives = 44/156 (28%), Gaps = 22/156 (14%)
Query: 1 MHLTKRTDYGIRV------LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
M + ++ I V L+YCA P + A +E K + +
Sbjct: 1641 MRIDRK----IHVQHNCEKLLYCAHRCSKPCSLDH-ECATTCNEECRQKCVHTRCRQNCS 1695
Query: 55 ETVRGRRGGVRLCRPADQITI--LDVVKATEESFFVA-------ECFASHKIDCPLVGSC 105
+ + + V +C + DC + C
Sbjct: 1696 TPCAPCQEPCTWNCAHQRCHVACGSVCARIPCDRRCNKNLACGHQCPSVCGEDCSIQ-VC 1754
Query: 106 GLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKIF 141
L + D++ ++ +V + +++ +
Sbjct: 1755 PL-CAPNELRAKTVDLVLGLTLADIVVDDATLDNLL 1789
>gi|297563413|ref|YP_003682387.1| ArsR family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847861|gb|ADH69881.1| transcriptional regulator, ArsR family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length = 302
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 10/116 (8%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L A + Q+AE + + + L+ L + G V + PA
Sbjct: 37 VRLLHAIATTPGS-VSVGQLAEMVEVRQPTVSHHLRKLAEVGFVTLTKAGTSTRVAVNPA 95
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCP-LVGSCGLTSVLRKAL-NAFFDVLTQ 124
+ A C CP + + T + A +A ++ Q
Sbjct: 96 CCTGLPHAADAVMGMLNARPC-------CPTDLPADVTTRAMADADLDAVREIYAQ 144
>gi|237797881|ref|ZP_04586342.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|237806027|ref|ZP_04592731.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020733|gb|EGI00790.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331027139|gb|EGI07194.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 156
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---- 67
R ++ + D ++ IAE + ++ +Q L +AGI++ RL
Sbjct: 6 RAILDI-LQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPHRLNVSVS 64
Query: 68 -------RPADQITILDVVKATEESFFVAEC 91
+ + A + V EC
Sbjct: 65 VFAAIRTNQHNAAWLEQFHAAVGDLPEVVEC 95
>gi|332185737|ref|ZP_08387484.1| marR family protein [Sphingomonas sp. S17]
gi|332014095|gb|EGI56153.1| marR family protein [Sphingomonas sp. S17]
Length = 153
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R M ++ P R + IAE ++ + + + + + G+V V R A
Sbjct: 35 RAKMLMFMNKHAPVRAADIAECFSLAPRTVTQAIDTMERDGLVRRVPDP-----ADRRAK 89
Query: 72 QITILDVVKATEESFFVA--ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
++ I D+ + E E + L +L K +A +
Sbjct: 90 RLDITDMGRQVLEQTEPLRREIVDLAFGTLTDEEAAQLDHILAKLEDAIAAEVED 144
>gi|256396679|ref|YP_003118243.1| MarR family transcriptional regulator [Catenulispora acidiphila DSM
44928]
gi|256362905|gb|ACU76402.1| transcriptional regulator, MarR family [Catenulispora acidiphila
DSM 44928]
Length = 162
Score = 35.3 bits (80), Expect = 2.9, Method: Composition-based stats.
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ VLM D + + + + IL L K+G V R +
Sbjct: 53 ALDVLM-----RDGAMSAKALGQRLGMHPATMTGILDKLEKSGWVVRERSPEDRRVVLIQ 107
Query: 70 ADQITILDVVKATEE 84
+ + +VV+
Sbjct: 108 PVRERVGEVVRLFAG 122
>gi|126437595|ref|YP_001073286.1| regulatory proteins, IclR [Mycobacterium sp. JLS]
gi|126237395|gb|ABO00796.1| regulatory protein, IclR [Mycobacterium sp. JLS]
Length = 306
Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 22/127 (17%), Positives = 43/127 (33%), Gaps = 16/127 (12%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
TD +R+L + A +S++A +++ I+ L +AG + +
Sbjct: 18 TDRVVRILDFLADRPQERFGVSELARRVGLTKPTCLGIVTALSEAGYLVRDPADKT---Y 74
Query: 67 CRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL-TQY 125
IT+ +A S ++ L S A A V+ +
Sbjct: 75 RLGPSLITLG--HRA----------QESMRVSPAAREQLRLLSARFGATAALSAVVDDRI 122
Query: 126 SIECLVR 132
++ LV
Sbjct: 123 TLLDLVA 129
>gi|297156072|gb|ADI05784.1| putative IclR family transcriptional regulator [Streptomyces
bingchenggensis BCW-1]
Length = 263
Score = 35.3 bits (80), Expect = 3.0, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R+ ++A+ + ++ +LQ L+ G V T
Sbjct: 23 LAARGDRPARLRELADELGVPRSSMYALLQTLIDRGWVRT 62
>gi|302678907|ref|XP_003029136.1| hypothetical protein SCHCODRAFT_237245 [Schizophyllum commune H4-8]
gi|300102825|gb|EFI94233.1| hypothetical protein SCHCODRAFT_237245 [Schizophyllum commune H4-8]
Length = 1884
Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 10/89 (11%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+ YGI V +Y A IS +A + FL I+ L V +
Sbjct: 1073 MMLSAF--YGIHVAVYLAA-------ISTLARRTS-NGYFLLIIITLLFVVSTVWFMVNF 1122
Query: 61 RGGVRLCRPADQITILDVVKATEESFFVA 89
+ + A + + D+++ V
Sbjct: 1123 HLEIAVALAAFRPDVYDILRHVAAPLLVI 1151
>gi|256810394|ref|YP_003127763.1| BadM/Rrf2 family transcriptional regulator [Methanocaldococcus
fervens AG86]
gi|256793594|gb|ACV24263.1| transcriptional regulator, BadM/Rrf2 family [Methanocaldococcus
fervens AG86]
Length = 145
Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 1 MH---LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV 57
M +TK+ ++ + P I ++A+ + L ++ L G+VET
Sbjct: 1 MKVEGITKK------IMEHL----KEPITIRELAKKLNMHPKNLDVKIRVLRDLGLVETK 50
Query: 58 RGRRGGVRLCR 68
+GR GGVRL R
Sbjct: 51 KGRNGGVRLTR 61
>gi|170036299|ref|XP_001846002.1| huntingtin interacting protein [Culex quinquefasciatus]
gi|167878879|gb|EDS42262.1| huntingtin interacting protein [Culex quinquefasciatus]
Length = 1152
Score = 35.3 bits (80), Expect = 3.1, Method: Composition-based stats.
Identities = 23/154 (14%), Positives = 54/154 (35%), Gaps = 16/154 (10%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEAC-----CISELFL---FKILQPLVKAGI 53
+T + +R L+ I + + I+E FL ++ L K I
Sbjct: 750 KIT--GESALRALLEACIKSSEKLTLRAISENEMPGAGGTPTYFLMIAEELQDVLSKLTI 807
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRK 113
V + + A ++ I + A+ ++ C S I+C + + L
Sbjct: 808 VHDNYLKDNTTNVESLARKVIIGAHLLASAHVQGMSICNRSANIECGERIAEEVKQ-LGG 866
Query: 114 ALNAFFDVLTQYSIEC-----LVRNRSSIKKIFN 142
++ + F L + S ++ + ++ + +
Sbjct: 867 SIASLFQSLQKTSESDAVGEKIIDLKDKLQAVTD 900
>gi|297199584|ref|ZP_06916981.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
29083]
gi|197713488|gb|EDY57522.1| IclR-family transcriptional regulator [Streptomyces sviceus ATCC
29083]
Length = 260
Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R+ ++A+ + ++ +LQ L+ G V T
Sbjct: 23 LAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 62
>gi|317406396|gb|EFV86616.1| transcriptional regulator [Achromobacter xylosoxidans C54]
Length = 256
Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ VL Y A +P ++Q+A+ + + L ++L + +AG V G
Sbjct: 34 ALLVLDYLARAQ-HPPTLAQLAQRLDMPKSTLMRLLASMQRAGFV-AATPTENGYVPGPQ 91
Query: 70 ADQITILDVV 79
A + + +
Sbjct: 92 ATALALATLR 101
>gi|307316657|ref|ZP_07596100.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
AK83]
gi|306897855|gb|EFN28598.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
AK83]
Length = 164
Score = 35.3 bits (80), Expect = 3.2, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L AI D +AE +S + L+ L KAGIV R R+ A
Sbjct: 8 LRILE--AIQADGRITKLALAEKAGLSPTPCWMRLRKLEKAGIVTGYHARVALRRVAPVA 65
Query: 71 D---QITILD--------VVKATEESFFVAEC 91
++T+ + +A + C
Sbjct: 66 SVMMEVTLGNHRQADFDRFERAISAIPEIVAC 97
>gi|323359279|ref|YP_004225675.1| transcriptional regulator [Microbacterium testaceum StLB037]
gi|323275650|dbj|BAJ75795.1| transcriptional regulator [Microbacterium testaceum StLB037]
Length = 257
Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+R+L A P IA I + +L L + G V
Sbjct: 16 LRILSLLARQPG-PVAAQTIATTLGIPRSSTYHLLATLEQHGYV 58
>gi|225388883|ref|ZP_03758607.1| hypothetical protein CLOSTASPAR_02623 [Clostridium asparagiforme
DSM 15981]
gi|225045056|gb|EEG55302.1| hypothetical protein CLOSTASPAR_02623 [Clostridium asparagiforme
DSM 15981]
Length = 248
Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 4/80 (5%)
Query: 6 RTDYGIRVLMYCAIH-NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
++ Y + + Y A H +D I+ IA + +SE L + + + + +
Sbjct: 142 KSKYVLEAMNYIAEHYSDSDISITPIARSLGVSESHLSHVFKK-ETSYTIVNYLTQYRIH 200
Query: 65 RLCRPADQIT--ILDVVKAT 82
+ + +V +
Sbjct: 201 MAMKLLQDCRYKVYEVAEMV 220
>gi|21221003|ref|NP_626782.1| IclR family transcriptional regulator [Streptomyces coelicolor
A3(2)]
gi|6714758|emb|CAB66222.1| putative IclR-family transcriptional regulator [Streptomyces
coelicolor A3(2)]
Length = 265
Score = 35.3 bits (80), Expect = 3.3, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R+ ++A+ + ++ +LQ L+ G V T
Sbjct: 28 LAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 67
>gi|330507926|ref|YP_004384354.1| hypothetical protein MCON_1966 [Methanosaeta concilii GP-6]
gi|328928734|gb|AEB68536.1| CBS domain pair protein/Domain of unknown function PF03444
[Methanosaeta concilii GP-6]
Length = 295
Score = 34.9 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + +IAE + + +Q L +VE V G +GG R A
Sbjct: 18 LTALINIYRVEGRAVKGEEIAELIDRNPGTIRNQMQSLKALNLVEGVPGPKGGYRATGSA 77
Query: 71 DQ 72
+
Sbjct: 78 YE 79
>gi|116672469|ref|YP_833402.1| MarR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116612578|gb|ABK05302.1| transcriptional regulator, MarR family [Arthrobacter sp. FB24]
Length = 159
Score = 34.9 bits (79), Expect = 3.3, Method: Composition-based stats.
Identities = 13/89 (14%), Positives = 25/89 (28%), Gaps = 3/89 (3%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ DY + + + +S++A S L ++ L G VE R
Sbjct: 38 KLS-LFDYNVLAM--LSEAEGRFLPMSELAARTSASLSRLSHVVTKLQNRGWVERRPHPR 94
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAE 90
+ +V+
Sbjct: 95 DARVTTAHLTDAGMATIVELAPGHVEAVR 123
>gi|327399965|ref|YP_004340804.1| AsnC family transcriptional regulator [Archaeoglobus veneficus
SNP6]
gi|327315473|gb|AEA46089.1| transcriptional regulator, AsnC family [Archaeoglobus veneficus
SNP6]
Length = 161
Score = 34.9 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--------ETVRGRRG 62
IRVL+ D + +IAE ++E ++ + + + G++ + G
Sbjct: 10 IRVLVEL--QEDARKSLREIAEKLGVAEGTVYNRINKMKRMGVIQKFIPIIDYSKLGFDL 67
Query: 63 GVRLCRPADQITILDVVKATEESFFVA 89
+ A+ +++V + V
Sbjct: 68 IAVIGVTAEGGHLIEVEEMLANEPNVT 94
>gi|289771719|ref|ZP_06531097.1| IclR family transcriptional regulator [Streptomyces lividans
TK24]
gi|289701918|gb|EFD69347.1| IclR family transcriptional regulator [Streptomyces lividans
TK24]
Length = 265
Score = 34.9 bits (79), Expect = 3.4, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R+ ++A+ + ++ +LQ L+ G V T
Sbjct: 28 LAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 67
>gi|323490069|ref|ZP_08095290.1| YqzB [Planococcus donghaensis MPA1U2]
gi|323396365|gb|EGA89190.1| YqzB [Planococcus donghaensis MPA1U2]
Length = 212
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 20/56 (35%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQIT 74
+ + P QIA+ ++ L L L AG ++ +P +T
Sbjct: 17 VKGNGPITGEQIADRLNLTRSTLRPDLAILTMAGFLDARPRVGYFYSGKKPGQDVT 72
>gi|320103006|ref|YP_004178597.1| transcriptional regulator TrmB [Isosphaera pallida ATCC 43644]
gi|319750288|gb|ADV62048.1| transcriptional regulator, TrmB [Isosphaera pallida ATCC 43644]
Length = 224
Score = 34.9 bits (79), Expect = 3.5, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 50/149 (33%), Gaps = 28/149 (18%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+Y A P +I+ +S + L+ L+ G+V R + G R R
Sbjct: 30 VHALLYVA---PEPLDAEEISNLLDVSRSNVSTSLRELIAWGVV--RRTHQIGGRRDRFE 84
Query: 71 DQITILDVVKATEESFF----------VAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
+++ + + C K+ P + L +
Sbjct: 85 AIKDVMETFRVIMAERKRREMDPTRALLEHCIHDAKLGGPDERYTI------EQLEKMLE 138
Query: 121 VLTQYS-----IECLVRNRSSIKKIFNAG 144
L S I+ L + S++K++ +G
Sbjct: 139 FLKLLSVWYGHIDQL--SNSALKRLLESG 165
>gi|118469804|ref|YP_887727.1| IclR family protein regulator [Mycobacterium smegmatis str. MC2
155]
gi|118171091|gb|ABK71987.1| probable IclR family protein regulator [Mycobacterium smegmatis
str. MC2 155]
Length = 260
Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 12/55 (21%), Positives = 23/55 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
IR+L A P +++IA +++ + + L + G+V G R
Sbjct: 19 IRILDLLAEARGVPRTLTEIARELGLAKSSVSNLCAALEEGGLVRRSTGGYLLGR 73
>gi|269128041|ref|YP_003301411.1| GntR domain-containing protein [Thermomonospora curvata DSM 43183]
gi|268312999|gb|ACY99373.1| GntR domain protein [Thermomonospora curvata DSM 43183]
Length = 254
Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
H + ++A +S + L + ++ L + G VE+ RGR GG + + D+
Sbjct: 51 AHGERLPPERELAPRLGVSRVTLREAIRALQQEGYVESRRGRSGGTFVIYRTPRPQSGDL 110
Query: 79 VKATEESFF 87
+ E
Sbjct: 111 ARVAEGQVE 119
>gi|242783242|ref|XP_002480148.1| O-methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
gi|218720295|gb|EED19714.1| O-methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
Length = 415
Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+D P +++AEA +FL ++L+ L G + + +P++ L +
Sbjct: 97 KDDKPKTAAELAEATGAEPVFLSRVLKHLGAMGAIYEIGP-----DTYKPSNFAKTLTIQ 151
Query: 80 KATEESFFVAEC 91
K + + +C
Sbjct: 152 KYADGFPCMTDC 163
>gi|184201972|ref|YP_001856179.1| MarR family transcriptional regulator [Kocuria rhizophila DC2201]
gi|183582202|dbj|BAG30673.1| putative MarR family transcriptional regulator [Kocuria rhizophila
DC2201]
Length = 157
Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 19/137 (13%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 1 MHLTKRTDYGIR---------VL-----MYCA-IHNDYPNRISQIAEACCISELFLFKIL 45
M L+ Y ++ L + A + P ++++A++ + + + +
Sbjct: 15 MLLS---RYALQGAPPQSRTEALDRSSTVLLARLQAGGPMSVAELAQSFGLDISTVHRQV 71
Query: 46 QPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSC 105
+K+G++E ++ GGV + + + + E F D
Sbjct: 72 AAAMKSGLIERIKDPEGGVARKHRPTEEGLRRLEEEFHARRESFERF---TRDWSAEDVA 128
Query: 106 GLTSVLRKALNAFFDVL 122
L + R+ + L
Sbjct: 129 TLAHLTRRFNESVEASL 145
>gi|326333004|ref|ZP_08199260.1| transcription regulator, GntR family [Nocardioidaceae bacterium
Broad-1]
gi|325949198|gb|EGD41282.1| transcription regulator, GntR family [Nocardioidaceae bacterium
Broad-1]
Length = 224
Score = 34.9 bits (79), Expect = 3.6, Method: Composition-based stats.
Identities = 11/71 (15%), Positives = 23/71 (32%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L+ I P QIA A + + + ++ L +V + R +
Sbjct: 30 LVMLDIRPGAPINDGQIAAAIGMGRTPVREAIKRLEADHLVHSFPRRGTFATTIDATELT 89
Query: 74 TILDVVKATEE 84
I ++ +
Sbjct: 90 AIAEIRRQLAP 100
>gi|145294081|ref|YP_001136902.1| hypothetical protein cgR_0039 [Corynebacterium glutamicum R]
gi|140844001|dbj|BAF53000.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 507
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
AI+ P I +IA + L +L+ LV+AG+V R
Sbjct: 455 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVATAPPSSRNRAY 504
>gi|111220230|ref|YP_711024.1| putative transcription regulator protein [Frankia alni ACN14a]
gi|111147762|emb|CAJ59422.1| Putative transcription regulator protein [Frankia alni ACN14a]
Length = 346
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
R+L + H + +S++A A I + +L LV+ G V G R
Sbjct: 12 RLLRFLGGHGETGYSLSELARAVGIDKSTCQAMLLALVEQGFVHRDDGHRT 62
>gi|21322789|dbj|BAB97418.1| Predicted transcriptional regulator containing an HTH domain and an
uncharacterized domain shared with the mammalian protein
Schlafen [Corynebacterium glutamicum ATCC 13032]
Length = 471
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
AI+ P I +IA + L +L+ LV+AG+V R
Sbjct: 419 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVATAPPSSRNRAY 468
>gi|19551275|ref|NP_599277.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|62388920|ref|YP_224322.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|41324253|emb|CAF18593.1| putative transcriptional regulator [Corynebacterium glutamicum ATCC
13032]
Length = 563
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
AI+ P I +IA + L +L+ LV+AG+V R
Sbjct: 511 AINKTTPVTIREIATKTGKTASSLRPLLRGLVEAGLVVATAPPSSRNRAY 560
>gi|296119411|ref|ZP_06837971.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306]
gi|295967598|gb|EFG80863.1| transcriptional regulator [Corynebacterium ammoniagenes DSM 20306]
Length = 180
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 15/78 (19%)
Query: 7 TDYGIR--------------VLMYCA-IHNDYPNRISQIAEACCISELFLFKILQPLVKA 51
T Y ++ L+ A +H+ P ++++AEA ++ + + L+ +
Sbjct: 46 TRYAVQNLPAIKRETIMDRSALILLARLHSQGPMTVNELAEAFGLNVSTVHRQLKAAIAN 105
Query: 52 GIVETVRGRRGGVRLCRP 69
++ET+ +L RP
Sbjct: 106 DLIETINAPENPAKLHRP 123
>gi|322434715|ref|YP_004216927.1| regulatory protein MarR [Acidobacterium sp. MP5ACTX9]
gi|321162442|gb|ADW68147.1| regulatory protein MarR [Acidobacterium sp. MP5ACTX9]
Length = 149
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 11/56 (19%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
RVL A D P + +A + + I+ L + G++ G ++
Sbjct: 43 RVLNRLA--KDGPATTADLARVEGMRPQSMRPIIATLEQGGMIARQPHPTDGRQVN 96
>gi|46200873|ref|ZP_00056260.2| COG1802: Transcriptional regulators [Magnetospirillum
magnetotacticum MS-1]
Length = 213
Score = 34.9 bits (79), Expect = 3.7, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 1 MHL--TKRTD--Y-GIRVLMYCAIH--NDYPNRISQIAEACCISELFLFKILQPLVKAGI 53
M L T D Y + ++ H + +A +S ++ + L GI
Sbjct: 1 MKLQKTNLADQAYTALHEMLLAGKHFMPGDKISVEDLARQLGVSRSPVWNAIARLEADGI 60
Query: 54 VETVRGRRGGVRLCRPADQITILDVVKATEE 84
VE A + IL + E
Sbjct: 61 VEVWPRHGVFFVGFDKARLMDILQTREVLEG 91
>gi|317486954|ref|ZP_07945764.1| O-methyltransferase [Bilophila wadsworthia 3_1_6]
gi|316921829|gb|EFV43105.1| O-methyltransferase [Bilophila wadsworthia 3_1_6]
Length = 335
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 8/83 (9%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 10 GIRVLMYCAIH---NDYPNRISQIAEACCISELFLFKILQPLVKAGIVETV-RGRRGGVR 65
I ++ + + P ++++A+ L ++L L G++
Sbjct: 21 AIHAAVHLDVFTPLSGGPMTVTELADRTGCVPQSLDRLLTALCAMGLLIRQGETCELPPF 80
Query: 66 LCRPADQITILDVVKATEESFFV 88
+ + E +
Sbjct: 81 SRDHLCRGNPGYLGHIVEHHRHL 103
>gi|290960548|ref|YP_003491730.1| IclR family transcriptional regulator [Streptomyces scabiei
87.22]
gi|260650074|emb|CBG73190.1| putative IclR-family transcriptional regulator [Streptomyces
scabiei 87.22]
Length = 263
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
A D P R+ ++A+ + ++ +LQ L+ G V T
Sbjct: 26 LAARGDRPARLQELADELGVPRSSMYALLQTLIGRGWVRTDT 67
>gi|206564487|ref|YP_002235250.1| hypothetical protein BCAM2649 [Burkholderia cenocepacia J2315]
gi|254249717|ref|ZP_04943037.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
gi|124876218|gb|EAY66208.1| Transcriptional regulator [Burkholderia cenocepacia PC184]
gi|198040527|emb|CAR56513.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 177
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 19/144 (13%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+Y A P +IAE ++ + L+ L + + V G R
Sbjct: 30 IHALLYLA---GRPVAADEIAETLNVARSNVSTSLKELQAWRLAKVVH--VLGDRRDHFE 84
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY- 125
I ++ K E + ++ C + R+ D L
Sbjct: 85 TSTDIWELFKLIVEGRR----QREIEPTLTVLRDCLTNPEIANESRETEQRIRDTLQFVE 140
Query: 126 SI----ECLVR-NRSSIKKIFNAG 144
++ + ++R ++ K G
Sbjct: 141 TLTTWSDEMLRLKPDTLMKALGIG 164
>gi|227824191|ref|YP_002828164.1| predicted transcriptional regulator protein, AsnC family
[Sinorhizobium fredii NGR234]
gi|227343193|gb|ACP27411.1| predicted transcriptional regulator protein, AsnC family
[Sinorhizobium fredii NGR234]
Length = 145
Score = 34.9 bits (79), Expect = 3.8, Method: Composition-based stats.
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69
R+L A + + ++A+ +S + L+ L + G++ RL P
Sbjct: 8 RILEILAANA--RVSLKELAQEAGLSSPSAAERLRKLEERGVINGFTVSVNPARLGYPLQ 65
Query: 70 ------ADQITILDVVKATEESFFVAECFASHKIDC 99
+ V + +++ + EC DC
Sbjct: 66 AVVRVRPMPGMLHIVERLIQQTPEIVECDKITGDDC 101
>gi|16264159|ref|NP_436951.1| putative transcriptional regulator protein [Sinorhizobium
meliloti 1021]
gi|307299990|ref|ZP_07579775.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
BL225C]
gi|15140284|emb|CAC48811.1| putative transcriptional regulator [Sinorhizobium meliloti 1021]
gi|306904879|gb|EFN35462.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
BL225C]
Length = 164
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 13/92 (14%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L AI D +AE +S + L+ L KAGIV R R+ A
Sbjct: 8 LRILE--AIQADGRITKLALAEKAGLSPTPCWMRLRKLEKAGIVTGYHARVALRRVAPVA 65
Query: 71 D---QITILD--------VVKATEESFFVAEC 91
++T+ + +A + C
Sbjct: 66 SVMMEVTLGNHRQADFDRFERAIAAIPEIVAC 97
>gi|107027743|ref|YP_625254.1| transcriptional regulators-like [Burkholderia cenocepacia AU 1054]
gi|116693546|ref|YP_839079.1| transcriptional regulators-like protein [Burkholderia cenocepacia
HI2424]
gi|170737176|ref|YP_001778436.1| transcriptional regulators-like protein [Burkholderia cenocepacia
MC0-3]
gi|105897117|gb|ABF80281.1| transcriptional regulators-like protein [Burkholderia cenocepacia
AU 1054]
gi|116651546|gb|ABK12186.1| transcriptional regulators-like protein [Burkholderia cenocepacia
HI2424]
gi|169819364|gb|ACA93946.1| transcriptional regulators-like protein [Burkholderia cenocepacia
MC0-3]
Length = 177
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+Y A P +IAE ++ + L+ L + + V G R
Sbjct: 30 IHALLYLA---GRPVAADEIAETLNVARSNVSTSLKELQAWRLAKVVH--VLGDRRDHFE 84
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY- 125
I ++ K E + ++ C + + R+ D L
Sbjct: 85 TSTDIWELFKLIVEGRR----QREIEPTLTVLRDCLTSPEIANESRETEQRIRDTLQFVE 140
Query: 126 SI----ECLVR-NRSSIKKIFNAG 144
++ + ++R ++ K G
Sbjct: 141 TLTTWSDEMLRLKPDTLMKALGIG 164
>gi|212527272|ref|XP_002143793.1| O-methyltransferase, putative [Penicillium marneffei ATCC 18224]
gi|210073191|gb|EEA27278.1| O-methyltransferase, putative [Penicillium marneffei ATCC 18224]
Length = 431
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITIL 76
A D P ++AEA +FL +IL+ L G + V + A +T
Sbjct: 104 LA-KGDKPKTAVELAEATGAEPVFLSRILKHLGAMGAIYEVGP--DTYQPTNFAKTLT-- 158
Query: 77 DVVKATEESFFVAECFASH 95
+ + + + +C S
Sbjct: 159 -IQRYADAYPCMTDCINSG 176
>gi|119717990|ref|YP_924955.1| regulatory proteins, IclR [Nocardioides sp. JS614]
gi|119538651|gb|ABL83268.1| regulatory protein, IclR [Nocardioides sp. JS614]
Length = 252
Score = 34.9 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 38/136 (27%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+ L+ + P +A + + +L+ LV G + R
Sbjct: 14 ALH-LLDAVGSSTRPMTAKALARQARMPLPTTYHLLRTLVHEGYL------------ARD 60
Query: 70 ADQITILD--VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN-----AFFDVL 122
+ + D + A + +L + A+ VL
Sbjct: 61 PEGYVLGDRAITLAGAPTLRPTH----------------THRILEHLRDELNAPAYLSVL 104
Query: 123 T--QYSIECLVRNRSS 136
+ + + +R+S
Sbjct: 105 DDGEIRLADVADSRTS 120
>gi|297203755|ref|ZP_06921152.1| transcriptional regulatory protein [Streptomyces sviceus ATCC
29083]
gi|197711804|gb|EDY55838.1| transcriptional regulatory protein [Streptomyces sviceus ATCC
29083]
Length = 381
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 24/136 (17%), Positives = 51/136 (37%), Gaps = 17/136 (12%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
+L A+ + P +++++A +S + IL LV+AG V + RPA +
Sbjct: 19 ILRALAVSSG-PRKLTELAGQTGLSRRTIELILDSLVEAGWVAELDRVPNNGCAGRPARR 77
Query: 73 ITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT-QYSIEC-- 129
+ A + + AS + +L +A + +++
Sbjct: 78 YEL-RAEHALLAAVRITTVDASAVVADVRG------HILGRAHRPLRAYKDPRTTLDDAA 130
Query: 130 -LVRNRSSIKKIFNAG 144
LV ++ + +AG
Sbjct: 131 ALV-----LQALEDAG 141
>gi|296118634|ref|ZP_06837212.1| transcriptional regulator, MarR family [Corynebacterium
ammoniagenes DSM 20306]
gi|295968533|gb|EFG81780.1| transcriptional regulator, MarR family [Corynebacterium
ammoniagenes DSM 20306]
Length = 167
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 14/78 (17%), Positives = 25/78 (32%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
L + ++ R+S++AE S L +++ L K G V G
Sbjct: 58 ALARLSEADNRSLRMSELAETANGSLSRLSQVIAKLEKKGWVTRSADPDDGRYTVATLTD 117
Query: 73 ITILDVVKATEESFFVAE 90
VV+ +
Sbjct: 118 AGYDKVVETAPGHVEQVQ 135
>gi|150398736|ref|YP_001329203.1| AsnC family transcriptional regulator [Sinorhizobium medicae
WSM419]
gi|150030251|gb|ABR62368.1| putative transcriptional regulator, AsnC family [Sinorhizobium
medicae WSM419]
Length = 145
Score = 34.9 bits (79), Expect = 4.0, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69
R+L A + + ++A+ +S + L+ L + G+++ RL P
Sbjct: 8 RILEILA--GNSRVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARLGYPLQ 65
Query: 70 ------ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
+ V + +E+ EC C + +L + + +L
Sbjct: 66 AIVRIRPMPGMLHIVERLIQETPEFIECDK------VTGDDCFIAKMLVRDMAELDTILD 119
Query: 124 QY 125
+
Sbjct: 120 RI 121
>gi|307596090|ref|YP_003902407.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM
14429]
gi|307551291|gb|ADN51356.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM
14429]
Length = 249
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
T Y I+ Y A+ + P +A I ++ +L L + G VE +R +
Sbjct: 17 TSYDIKA--YIALVENGPLTARDVAMKANIPSSKVYSVLHKLYRLGYVEIDDKKRPELFY 74
Query: 67 CRPADQI 73
I
Sbjct: 75 AVSPTDI 81
>gi|294632783|ref|ZP_06711342.1| GntR-family transcriptional regulator [Streptomyces sp. e14]
gi|292830564|gb|EFF88914.1| GntR-family transcriptional regulator [Streptomyces sp. e14]
Length = 247
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ + +A+ +S + L ++L+ L GIVE+ RGR GG + R
Sbjct: 41 LVPYGERLPAERDLADRLGVSRVTLREVLKALQDQGIVESRRGRYGGTFVLRRP 94
>gi|293393837|ref|ZP_06638144.1| MarR family transcriptional regulator [Serratia odorifera DSM 4582]
gi|291423664|gb|EFE96886.1| MarR family transcriptional regulator [Serratia odorifera DSM 4582]
Length = 153
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 34/109 (31%), Gaps = 5/109 (4%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L+ + +S I E + L +L+ L AG++ R ++
Sbjct: 50 LVMLVLWERDEITVSDIGERLFLDSATLTPLLKRLEAAGLLLRYRAVNDERQVIIA---- 105
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
+ D +A E DC L + L K N + L
Sbjct: 106 -LTDAGRALREKAHAVPEAVMCATDCSLDEVSSIKQQLEKLRNRLINQL 153
>gi|46446532|ref|YP_007897.1| putative RNase BN, tRNA processing enzyme [Candidatus
Protochlamydia amoebophila UWE25]
gi|46400173|emb|CAF23622.1| putative RNase BN, tRNA processing enzyme [Candidatus
Protochlamydia amoebophila UWE25]
Length = 389
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV--ETVRGRRGGVRLCRPADQITIL 76
+ N+ P ++ +S L +L+ L I+ + + G + R + IT
Sbjct: 274 VKNEMPLTDRALSHELGMSLNHLQLVLEALQSDRILSAISFHDKTIGYQPARAVESITTK 333
Query: 77 DVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
V A ++S + + + L+ + + S+ V ++
Sbjct: 334 KVCDAIDKSERLMASVRPSP------QMDRINNFLKLIDESIENASDNQSLYTYVSQKAD 387
Query: 137 IK 138
+
Sbjct: 388 MN 389
>gi|330900782|gb|EGH32201.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
japonica str. M301072PT]
Length = 156
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---- 67
R ++ + D ++ IAE + ++ +Q L +AGI++ RL
Sbjct: 6 RAILDI-LQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVS 64
Query: 68 -------RPADQITILDVVKATEESFFVAEC 91
+ + A E V EC
Sbjct: 65 VFAAIRTNQHNAAWLEQFHAAVGELPEVVEC 95
>gi|329934388|ref|ZP_08284467.1| MarR family transcriptional regulator [Streptomyces
griseoaurantiacus M045]
gi|329305984|gb|EGG49839.1| MarR family transcriptional regulator [Streptomyces
griseoaurantiacus M045]
Length = 163
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
+R L A H + P R+ ++E I+ I+ L + G+V
Sbjct: 59 LRALRMLA-HAERPLRMRDLSERAGIAARTATTIVDSLERDGLV 101
>gi|302551328|ref|ZP_07303670.1| IclR-family transcriptional regulator [Streptomyces
viridochromogenes DSM 40736]
gi|302468946|gb|EFL32039.1| IclR-family transcriptional regulator [Streptomyces
viridochromogenes DSM 40736]
Length = 260
Score = 34.9 bits (79), Expect = 4.1, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R+ ++A+ + ++ +LQ LV G V T
Sbjct: 23 LAARGDRPARLQELADELGVPRSSMYALLQTLVSRGWVRT 62
>gi|315230134|ref|YP_004070570.1| hypothetical protein TERMP_00370 [Thermococcus barophilus MP]
gi|315183162|gb|ADT83347.1| hypothetical protein TERMP_00370 [Thermococcus barophilus MP]
Length = 59
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 23/49 (46%)
Query: 13 VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
V++ P + ++IAE I + + KI++ L K G + + +
Sbjct: 6 VVLEVMKKAGKPLKSAEIAEMTGIPKKEVDKIIKKLKKEGKIVSPKRCY 54
>gi|330944832|ref|XP_003306428.1| hypothetical protein PTT_19570 [Pyrenophora teres f. teres 0-1]
gi|311316041|gb|EFQ85452.1| hypothetical protein PTT_19570 [Pyrenophora teres f. teres 0-1]
Length = 294
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCIS 37
T+Y IR++ + A ++ P + ++AE I
Sbjct: 151 TEYAIRIMRWLAF-SERPLSLDELAEVIAID 180
>gi|284997741|ref|YP_003419508.1| transcriptional regulator TrmB [Sulfolobus islandicus L.D.8.5]
gi|284445636|gb|ADB87138.1| transcriptional regulator TrmB [Sulfolobus islandicus L.D.8.5]
Length = 655
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILD 77
A+ ++ + +IA+A +S+ + +L+ L + G+VE + + I
Sbjct: 489 ALPDEGGLKSQEIADALKVSKQYAINVLKNLERKGVVEGEKEDGKTFTWYLTSLGRRI-- 546
Query: 78 VVKATEESFFVAECFASHKI 97
KA + V E
Sbjct: 547 --KALVSNLDVVEVRNDKGE 564
>gi|71736585|ref|YP_277137.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|257482552|ref|ZP_05636593.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
gi|289623619|ref|ZP_06456573.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. NCPPB3681]
gi|289648205|ref|ZP_06479548.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 2250]
gi|298489378|ref|ZP_07007391.1| Transcriptional regulator, AsnC family [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|302185853|ref|ZP_07262526.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
syringae 642]
gi|71557138|gb|AAZ36349.1| transcriptional regulator, AsnC family [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298156108|gb|EFH97215.1| Transcriptional regulator, AsnC family [Pseudomonas savastanoi
pv. savastanoi NCPPB 3335]
gi|320326513|gb|EFW82564.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. B076]
gi|320331421|gb|EFW87362.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330866654|gb|EGH01363.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330881253|gb|EGH15402.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330891866|gb|EGH24527.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
mori str. 301020]
gi|330952217|gb|EGH52477.1| AsnC family transcriptional regulator [Pseudomonas syringae Cit
7]
gi|330970453|gb|EGH70519.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
aceris str. M302273PT]
gi|330987990|gb|EGH86093.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012803|gb|EGH92859.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
tabaci ATCC 11528]
Length = 156
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---- 67
R ++ + D ++ IAE + ++ +Q L +AGI++ RL
Sbjct: 6 RAILDI-LQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVS 64
Query: 68 -------RPADQITILDVVKATEESFFVAEC 91
+ + A E V EC
Sbjct: 65 VFAAIRTNQHNAAWLEQFHAAVGELPEVVEC 95
>gi|256787834|ref|ZP_05526265.1| IclR family transcriptional regulator [Streptomyces lividans
TK24]
Length = 244
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R+ ++A+ + ++ +LQ L+ G V T
Sbjct: 7 LAARGDRPARLQELADELGVPRSSMYALLQTLISRGWVRT 46
>gi|302526947|ref|ZP_07279289.1| transcriptional regulator [Streptomyces sp. AA4]
gi|302435842|gb|EFL07658.1| transcriptional regulator [Streptomyces sp. AA4]
Length = 284
Score = 34.9 bits (79), Expect = 4.2, Method: Composition-based stats.
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 15 MYCAIHNDYPN-RISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
+ A + N ++++A A +S + ++L L + G V + R +
Sbjct: 35 VLLAFDEERTNPTLTELATATNLSRPAVRRLLLTLQRMGYVTSDGP-----RWSLTPRVL 89
Query: 74 TILDVVKATEESFFVAE 90
TI AT +A
Sbjct: 90 TIGQHYTATRAMIDLAH 106
>gi|325519774|gb|EGC99077.1| transcriptional regulators-like protein [Burkholderia sp. TJI49]
Length = 177
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+Y A P +IAE ++ + L+ L + + V G R
Sbjct: 30 IHALLYLA---GRPVAADEIAETLNVARSNVSTSLKELQAWRLAKVVH--VLGDRRDHFE 84
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY- 125
I ++ K E + ++ C + + R+ D L
Sbjct: 85 TSTDIWELFKLIVEGRR----QREIEPTLTVLRDCLTSPEIADESRETEQRIRDTLQFVE 140
Query: 126 SI----ECLVR-NRSSIKKIFNAG 144
++ + ++R ++ K G
Sbjct: 141 TLTTWSDEMLRLKPDTLMKALGIG 164
>gi|325846775|ref|ZP_08169690.1| hypothetical protein HMPREF9246_0638 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
gi|325481533|gb|EGC84574.1| hypothetical protein HMPREF9246_0638 [Anaerococcus hydrogenalis
ACS-025-V-Sch4]
Length = 48
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 90 ECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNR 134
+C A + +C C V K +A + + +I+ +V +
Sbjct: 5 QCVAD-RNNCNNEE-CEAYYVFAKIDDAINNAVNSITIKDMVNEK 47
>gi|298675660|ref|YP_003727410.1| putative signal transduction protein [Methanohalobium evestigatum
Z-7303]
gi|298288648|gb|ADI74614.1| putative signal transduction protein with CBS domains
[Methanohalobium evestigatum Z-7303]
Length = 291
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+ ++ + IAE + + +Q L G+VE V G +GG + A
Sbjct: 11 IIALINLQRQKNHAIKGEDIAEVIQRNPGTVRNQMQSLKVLGLVEGVPGPKGGYKATGKA 70
Query: 71 DQ 72
+
Sbjct: 71 YE 72
>gi|66043403|ref|YP_233244.1| helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
B728a]
gi|63254110|gb|AAY35206.1| Helix-turn-helix, Fis-type [Pseudomonas syringae pv. syringae
B728a]
Length = 156
Score = 34.9 bits (79), Expect = 4.3, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---- 67
R ++ + D ++ IAE + ++ +Q L +AGI++ RL
Sbjct: 6 RAILDI-LQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVS 64
Query: 68 -------RPADQITILDVVKATEESFFVAEC 91
+ + A E V EC
Sbjct: 65 VFAAIRTNQHNAAWLEQFHAAVGELPEVVEC 95
>gi|289672757|ref|ZP_06493647.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
syringae FF5]
gi|330937166|gb|EGH41207.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
pisi str. 1704B]
gi|330976546|gb|EGH76595.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 156
Score = 34.5 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---- 67
R ++ + D ++ IAE + ++ +Q L +AGI++ RL
Sbjct: 6 RAILDI-LQTDCTRSVADIAERIGLGSTACWRRIQKLEEAGIIDRRVALLNPQRLNVSVS 64
Query: 68 -------RPADQITILDVVKATEESFFVAEC 91
+ + A E V EC
Sbjct: 65 VFAAIRTNQHNAAWLEQFHAAVGELPEVVEC 95
>gi|59712240|ref|YP_205016.1| fatty acid metabolism regulator [Vibrio fischeri ES114]
gi|59480341|gb|AAW86128.1| DNA-binding transcriptional dual regulator of fatty acid metabolism
[Vibrio fischeri ES114]
Length = 280
Score = 34.5 bits (78), Expect = 4.4, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 28/85 (32%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
+++E ++ L ++LQ L + G + G+ V + ILD + ++
Sbjct: 35 RELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNYMETSGLHILDTLMTLVDANN 94
Query: 88 VAECFASHKIDCPLVGSCGLTSVLR 112
+ + +
Sbjct: 95 ATSIVEDLLAARTNISCIFMRQAFK 119
>gi|322437600|ref|YP_004219690.1| transcriptional regulator, AraC family [Acidobacterium sp.
MP5ACTX9]
gi|321165493|gb|ADW71196.1| transcriptional regulator, AraC family [Acidobacterium sp.
MP5ACTX9]
Length = 294
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQP 47
RVL Y A H + + ++A IS +L + +
Sbjct: 196 RVLSYIAEHLNESITLEELARVAEISPNYLIALFRQ 231
>gi|327310413|ref|YP_004337310.1| transcriptional regulator TrmB [Thermoproteus uzoniensis 768-20]
gi|326946892|gb|AEA11998.1| transcriptional regulator, TrmB [Thermoproteus uzoniensis 768-20]
Length = 238
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 5/86 (5%)
Query: 8 DYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC 67
D I L+ P +IAE + +++ L L G VE V GR
Sbjct: 15 DLAIYALLV----EKGPLTAREIAENVGVPYTKIYQHLDALEGRGFVERVEGRPARYAAR 70
Query: 68 RPADQITILDVVKATEESFFVAECFA 93
PA+ V A+ + E
Sbjct: 71 PPAEVYR-GLVSYASAALKALKEHMD 95
>gi|300693576|ref|YP_003749549.1| transcriptional regulatory protein, marr [Ralstonia solanacearum
PSI07]
gi|299075613|emb|CBJ34907.1| putative transcriptional regulatory protein, MarR [Ralstonia
solanacearum PSI07]
Length = 158
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 25/79 (31%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+++ H Q+AE + L + L+ L + G +E V R
Sbjct: 37 RIMLALHDHTGGGLAQKQLAERLQMDPGALTRQLKVLEQLGWIERVTDARDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAE 90
+ V++
Sbjct: 97 DAGLAVVLECMPRRVAFLN 115
>gi|253577528|ref|ZP_04854841.1| biotin-acetyl-CoA-carboxylase ligase [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251843068|gb|EES71103.1| biotin-acetyl-CoA-carboxylase ligase [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 327
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+L H +++ IS ++K + L + G E R G RL R D
Sbjct: 6 RLLDMLLEHPGQYISGEELSRRLSISRTAVWKQIAKLREEGY-EFESAPRRGYRLTRQPD 64
Query: 72 QITILDVVKATEESFFV 88
+++ ++ A + +
Sbjct: 65 KLSHAGLLHALQGTKTF 81
>gi|197335373|ref|YP_002156454.1| fatty acid metabolism transcriptional regulator FadR [Vibrio
fischeri MJ11]
gi|197316863|gb|ACH66310.1| fatty acid metabolism transcriptional regulator FadR [Vibrio
fischeri MJ11]
Length = 280
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 11/85 (12%), Positives = 28/85 (32%)
Query: 28 SQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFF 87
+++E ++ L ++LQ L + G + G+ V + ILD + ++
Sbjct: 35 RELSELIGVTRTTLREVLQRLARDGWLTIQHGKPTKVNNYMETSGLHILDTLMTLVDANN 94
Query: 88 VAECFASHKIDCPLVGSCGLTSVLR 112
+ + +
Sbjct: 95 ATSIVEDLLAARTNISCIFMRQAFK 119
>gi|188590809|ref|YP_001795409.1| IclR family transcriptional regulator [Cupriavidus taiwanensis
LMG 19424]
gi|170937703|emb|CAP62687.1| putative transcriptional regulator, IclR family [Cupriavidus
taiwanensis LMG 19424]
Length = 264
Score = 34.5 bits (78), Expect = 4.5, Method: Composition-based stats.
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 12 RVLMYCAI--HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
RVL A H+ P + ++ + + L++ L L + G V G
Sbjct: 30 RVLFVLAALAHHGAPITVRELVARTGLPKSTLYRQLMLLKRWGFVLESDGEYAP 83
>gi|148273988|ref|YP_001223549.1| MarR family transcriptional regulator [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831918|emb|CAN02889.1| putative transcriptional regulator, MarR family [Clavibacter
michiganensis subsp. michiganensis NCPPB 382]
Length = 164
Score = 34.5 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 5/104 (4%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L+ A+ + P + +AE ++ L +L+ L G V R RL
Sbjct: 43 LVLLALDEEEPQAVVDLAEKLHLTPGTLSPLLKRLEVFGYVTRFRDMTDERRLSVG---- 98
Query: 74 TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNA 117
+ D + + I G L +L+ L+
Sbjct: 99 -LTDAGREMLPVIWRVGDQVRRDIAGEDAGDSALRDLLQDVLDR 141
>gi|17548885|ref|NP_522225.1| transcription regulator protein [Ralstonia solanacearum GMI1000]
gi|17431135|emb|CAD17815.1| probable transcription regulator protein [Ralstonia solanacearum
GMI1000]
Length = 158
Score = 34.5 bits (78), Expect = 4.6, Method: Composition-based stats.
Identities = 13/87 (14%), Positives = 25/87 (28%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+++ H Q+AE + L + L+ L + G +E R
Sbjct: 37 RIMLALHDHTGGGLAQKQLAERLQMDPGALTRQLKVLEQLGWIERTTDARDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKID 98
+ V++ D
Sbjct: 97 DAGLSVVLECMPRRVAFLHATLDGLPD 123
>gi|78212901|ref|YP_381680.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
gi|78197360|gb|ABB35125.1| diaminopimelate epimerase [Synechococcus sp. CC9605]
Length = 368
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 11/93 (11%), Positives = 24/93 (25%), Gaps = 13/93 (13%)
Query: 49 VKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV---------AECFASHKIDC 99
+ G V D + + +T E+ +C C
Sbjct: 261 DRTGSVLMTGPAEAVFDGVLTPDMVPAGSAMASTSEAPAAPPAATAAADFDCSKDCADQC 320
Query: 100 PLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
C + +A L+ S++ ++
Sbjct: 321 QRPDRC----LRDEAQQKVQVFLSSTSLDSMLN 349
>gi|222479367|ref|YP_002565604.1| Protein of unknown function DUF293 [Halorubrum lacusprofundi ATCC
49239]
gi|222452269|gb|ACM56534.1| Protein of unknown function DUF293 [Halorubrum lacusprofundi ATCC
49239]
Length = 177
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 21/100 (21%), Positives = 38/100 (38%), Gaps = 3/100 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ L+ + + IAE + + +Q L +VE V G +GG + A
Sbjct: 14 LTALINLYGEQEDAVKGEAIAEEVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTSNA 73
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
+ LD+ + +E V ++ V L+SV
Sbjct: 74 YEA--LDIQR-MDEPADVPIFHEGEEVTGVNVDGIDLSSV 110
>gi|299069032|emb|CBJ40281.1| putative transcriptional regulatory protein, MarR [Ralstonia
solanacearum CMR15]
Length = 158
Score = 34.5 bits (78), Expect = 4.7, Method: Composition-based stats.
Identities = 16/110 (14%), Positives = 30/110 (27%), Gaps = 3/110 (2%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R+++ H Q+AE + L + L+ L + G +E R
Sbjct: 37 RIMLALHDHTGGGLAQKQLAERLQMDPGALTRQLKVLEQLGWIERTTDARDNRLTNVSLS 96
Query: 72 QITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
+ V++ D + L+ L D
Sbjct: 97 DAGLTVVLECMPRRVAFLHATLDGLPDDQVR---ALSDALSVIETRIADA 143
>gi|332652613|ref|ZP_08418358.1| transcriptional regulatory protein CitT [Ruminococcaceae bacterium
D16]
gi|332517759|gb|EGJ47362.1| transcriptional regulatory protein CitT [Ruminococcaceae bacterium
D16]
Length = 236
Score = 34.5 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 16 YCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ A +IAE +S + + + + +V+ G + + + G R
Sbjct: 168 FLARSQGQALTSEEIAEQVHLSRITIRRYVNYMVETGELVSSIDYQTGGRP 218
>gi|187919091|ref|YP_001888122.1| IclR family transcriptional regulator [Burkholderia phytofirmans
PsJN]
gi|187717529|gb|ACD18752.1| transcriptional regulator, IclR family [Burkholderia phytofirmans
PsJN]
Length = 250
Score = 34.5 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+++D P ++ IA+ + + L ++L L G+V G++ + Q+ + V
Sbjct: 19 VNSDGPVSLADIAQDVALPKASLHRMLASLEAGGLVIREPGQKNAYVIGPRLAQLALGVV 78
Query: 79 VK 80
+
Sbjct: 79 MH 80
>gi|182434384|ref|YP_001822103.1| hypothetical protein SGR_591 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178462900|dbj|BAG17420.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 550
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
+R+L+ A D + +AEA + + + + LVK G+V +
Sbjct: 26 ALRLLLPIASAMDGRRTVGDLAEATDLPYEAVAQAVALLVKQGLVLS 72
>gi|158421890|ref|YP_001523182.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
571]
gi|158328779|dbj|BAF86264.1| transcriptional regulatory protein [Azorhizobium caulinodans ORS
571]
Length = 154
Score = 34.5 bits (78), Expect = 4.9, Method: Composition-based stats.
Identities = 15/93 (16%), Positives = 34/93 (36%), Gaps = 13/93 (13%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+++L + + +AEA +S + Q L + G + VR + ++ R
Sbjct: 10 LKILRLL--QANGRMSNADLAEAVAVSPATCHRRTQRLFEQGYLSGVRAQVNPHKVERGT 67
Query: 71 DQI-----------TILDVVKATEESFFVAECF 92
+ + + +A + FV +C
Sbjct: 68 LVMVGVVLDRSTPESFGEFERAVAKLKFVLDCH 100
>gi|303230772|ref|ZP_07317519.1| putative transcriptional repressor CcpN [Veillonella atypica
ACS-049-V-Sch6]
gi|302514532|gb|EFL56527.1| putative transcriptional repressor CcpN [Veillonella atypica
ACS-049-V-Sch6]
Length = 215
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 7/80 (8%)
Query: 1 MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
M L+KR + + + P S IA+ ++ L L L G++E
Sbjct: 1 MKLSKRQE----AIAHIVREKG-PVTGSAIAKHLDVTRSALRSDLAVLTMIGVLEA--RP 53
Query: 61 RGGVRLCRPADQITILDVVK 80
G + + ++++
Sbjct: 54 NVGYYYVGLSPKDQTAEILR 73
>gi|288930617|ref|YP_003434677.1| TrmB family transcriptional regulator [Ferroglobus placidus DSM
10642]
gi|288892865|gb|ADC64402.1| transcriptional regulator, TrmB [Ferroglobus placidus DSM 10642]
Length = 217
Score = 34.5 bits (78), Expect = 5.0, Method: Composition-based stats.
Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 23 YPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
P +S+I+ + ++ + + L+ L KAGIV++ R ++I
Sbjct: 25 KPCYVSEISYSLRMAPKVVLEHLEKLEKAGIVKSFEEGRRRYYYIEKPLSLSI-----TI 79
Query: 83 EESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKK 139
FV + V R+ F ++ L+R S I++
Sbjct: 80 TPYRFVTNVSENTLSA---------DEVFREIRELFEK--KSTTVSDLIRKASEIER 125
>gi|119964297|ref|YP_949438.1| MarR family transcriptional regulator [Arthrobacter aurescens TC1]
gi|119951156|gb|ABM10067.1| putative transcriptional regulator, MarR family [Arthrobacter
aurescens TC1]
Length = 159
Score = 34.5 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 16/123 (13%), Positives = 29/123 (23%), Gaps = 9/123 (7%)
Query: 2 HLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRR 61
L+ DY + + + +S++A S L ++ L K G VE
Sbjct: 38 KLS-LFDYNVLAM--LSETEGRYLPMSELAARTSASLSRLSHVVTKLQKRGWVERQAHPG 94
Query: 62 GGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
+ +V + V L +
Sbjct: 95 DARVTVAHLTDAGMSTIVSLAPGHVESVRTLMLDSLSPEDVAD------LARIGEKIVAR 148
Query: 122 LTQ 124
L
Sbjct: 149 LDN 151
>gi|115696815|ref|XP_789776.2| PREDICTED: similar to PHD finger protein 8 [Strongylocentrotus
purpuratus]
gi|115950108|ref|XP_001176061.1| PREDICTED: similar to PHD finger protein 8 [Strongylocentrotus
purpuratus]
Length = 951
Score = 34.5 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 19/115 (16%), Positives = 33/115 (28%), Gaps = 5/115 (4%)
Query: 31 AEACCISELFLFKILQPLVKAGIVET-VRGRRGGVRLCRPADQITILDVVKATEESFFV- 88
A+ + + L K G + + G+ L P T+ DV +
Sbjct: 99 ADEILLHPRGHELTVDFLDKNGFQSPIMIDNKEGLGLIVPPPTFTVADVEEYVGSDMEFD 158
Query: 89 ---AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSSIKKI 140
K+ + K LN +Q + LV ++KI
Sbjct: 159 VIDVRKQDEMKMSMRDWSDYFTSPSRDKILNVISLEFSQTRLSDLVEAPRVVRKI 213
>gi|150389109|ref|YP_001319158.1| GntR family transcriptional regulator [Alkaliphilus
metalliredigens QYMF]
gi|149948971|gb|ABR47499.1| transcriptional regulator, GntR family [Alkaliphilus
metalliredigens QYMF]
Length = 223
Score = 34.5 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 12/71 (16%)
Query: 1 MHL-------TKRTDYGIRVL----MYCAIHNDYPNRISQIAEACCISELFLFKILQPLV 49
M + T R DY +R+L + + +++A +S + + L L
Sbjct: 1 MQIAERLAKETTR-DYALRILKYNIIMLELKPGSIVSENELATEIGVSRTPVREALIELS 59
Query: 50 KAGIVETVRGR 60
K IVE +
Sbjct: 60 KTQIVEIYPQK 70
>gi|115359541|ref|YP_776679.1| transcriptional regulators-like protein [Burkholderia ambifaria
AMMD]
gi|171320608|ref|ZP_02909629.1| transcriptional regulators-like protein [Burkholderia ambifaria
MEX-5]
gi|172064347|ref|YP_001811998.1| transcriptional regulators-like protein [Burkholderia ambifaria
MC40-6]
gi|115284829|gb|ABI90345.1| transcriptional regulators-like protein [Burkholderia ambifaria
AMMD]
gi|171094150|gb|EDT39236.1| transcriptional regulators-like protein [Burkholderia ambifaria
MEX-5]
gi|171996864|gb|ACB67782.1| transcriptional regulators-like protein [Burkholderia ambifaria
MC40-6]
Length = 177
Score = 34.5 bits (78), Expect = 5.1, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+Y A P +IAE ++ + L+ L + + V G R
Sbjct: 30 IHALLYLA---GRPVAADEIAETLNVARSNVSTSLKELQAWRLAKVVH--VLGDRRDHFE 84
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY- 125
I ++ K E + ++ C + + R+ D L
Sbjct: 85 TSTDIWELFKLIVEGRR----QREIEPTLTVLRDCLTSPEIADESRETEQRIRDTLQFVE 140
Query: 126 SI----ECLVR-NRSSIKKIFNAG 144
++ + ++R ++ K G
Sbjct: 141 TLTTWSDEMLRLKPDTLMKALGIG 164
>gi|313634176|gb|EFS00831.1| MarR family transcriptional regulator [Listeria seeligeri FSL
N1-067]
gi|313638799|gb|EFS03879.1| MarR family transcriptional regulator [Listeria seeligeri FSL
S4-171]
Length = 156
Score = 34.5 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 13/116 (11%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ + Y A H+D ++AEA +++ + K+ + L++ G VE+ + +
Sbjct: 38 VHCMEYIAKHDDSNVT--KLAEAFYMTKSAISKLTKKLIEKGFVESYQKPENKKEIY--- 92
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
+ T++ + + S + V L +YS
Sbjct: 93 --------FRLTKKGAEINQVHDSLHQEFLERDKIIFDEVTDDQYEEVLQFLAKYS 140
>gi|254524745|ref|ZP_05136800.1| Sugar-specific transcriptional regulator TrmB family
[Stenotrophomonas sp. SKA14]
gi|219722336|gb|EED40861.1| Sugar-specific transcriptional regulator TrmB family
[Stenotrophomonas sp. SKA14]
Length = 169
Score = 34.5 bits (78), Expect = 5.2, Method: Composition-based stats.
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRL 66
+ + P I ++AE L+ L L K G+V R G R
Sbjct: 7 LDAEGPASIRELAERLGRPATALYHHLAHLQKHGLVRITEHRDTGRRP 54
>gi|113954972|ref|YP_730575.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
gi|113882323|gb|ABI47281.1| diaminopimelate epimerase [Synechococcus sp. CC9311]
Length = 380
Score = 34.5 bits (78), Expect = 5.3, Method: Composition-based stats.
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+C K +C C + +A + L+ S++ ++
Sbjct: 321 LDCANDCKDNCNQPDDC----LRDEAQAQVQEFLSSTSLDAMIN 360
>gi|325958233|ref|YP_004289699.1| phosphate uptake regulator PhoU [Methanobacterium sp. AL-21]
gi|325329665|gb|ADZ08727.1| phosphate uptake regulator, PhoU [Methanobacterium sp. AL-21]
Length = 299
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE 55
KR+D ++ ++ +H D P +IAE ++ ++ K+LQP+VK G+V
Sbjct: 2 KRSDSTLKAILDVILH-DNPATQDEIAEKLGLTRRYVTKLLQPMVKRGVVR 51
>gi|307718329|ref|YP_003873861.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192]
gi|306532054|gb|ADN01588.1| iron-dependent repressor [Spirochaeta thermophila DSM 6192]
Length = 156
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 18/121 (14%), Positives = 34/121 (28%), Gaps = 6/121 (4%)
Query: 4 TKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGG 63
++ DY + + A R+ IAEA +S + L L G +
Sbjct: 8 SRMEDY-LEAIYVLA-KTKRVARVRDIAEALGVSRSTVSNTLHTLSDRGFI--EYAPYDI 63
Query: 64 VRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL-RKALNAFFDVL 122
+ L ++ DV + +C + + + L L
Sbjct: 64 ISLTEEGEEA-AKDVFRRHTILKRFFRVVLGADEQMAEENACRIEHAISEELLERLVQYL 122
Query: 123 T 123
Sbjct: 123 E 123
>gi|326774896|ref|ZP_08234161.1| hypothetical protein SACT1_0686 [Streptomyces cf. griseus
XylebKG-1]
gi|326655229|gb|EGE40075.1| hypothetical protein SACT1_0686 [Streptomyces cf. griseus
XylebKG-1]
Length = 551
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
+R+L+ A D + +AEA + + + + LVK G+V +
Sbjct: 45 ALRLLLPIASAMDGRRTVGDLAEATDLPYEAVAQAVALLVKQGLVLS 91
>gi|288932461|ref|YP_003436521.1| TrmB family transcriptional regulator [Ferroglobus placidus DSM
10642]
gi|288894709|gb|ADC66246.1| transcriptional regulator, TrmB [Ferroglobus placidus DSM 10642]
Length = 208
Score = 34.5 bits (78), Expect = 5.4, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
K +DY I+VL + ++ S+IAE I +++ ++ L K G+V
Sbjct: 8 KLSDYEIKVL--LTLISEGELTASEIAEKSGIPRTSVYETVKSLEKKGLVVCRGKP 61
>gi|293605806|ref|ZP_06688179.1| IclR family transcriptional regulator [Achromobacter piechaudii
ATCC 43553]
gi|292815801|gb|EFF74909.1| IclR family transcriptional regulator [Achromobacter piechaudii
ATCC 43553]
Length = 280
Score = 34.5 bits (78), Expect = 5.5, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
+ VL + A +P ++Q+A+ + + L ++L + +AG V
Sbjct: 35 ALIVLDHLARAQ-HPPTLAQLAQRLDMPKTTLMRLLAAMQRAGFVAATP 82
>gi|289434105|ref|YP_003463977.1| transcriptional regulator, MarR family [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|289170349|emb|CBH26889.1| transcriptional regulator, MarR family [Listeria seeligeri serovar
1/2b str. SLCC3954]
Length = 156
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 13/116 (11%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ + Y A H D ++AEA +++ + K+ + L++ G VE+ + +
Sbjct: 38 VHCMEYIAKHEDSNVT--KLAEAFYMTKSAISKLTKKLIEKGFVESYQKPENKKEIY--- 92
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYS 126
+ T++ + + S + V L +YS
Sbjct: 93 --------FRLTKKGAEINQVHDSLHQEFLERDKIIFDEVTDDQYEEVLQFLAKYS 140
>gi|152967681|ref|YP_001363465.1| MarR family transcriptional regulator [Kineococcus radiotolerans
SRS30216]
gi|151362198|gb|ABS05201.1| transcriptional regulator, MarR family [Kineococcus radiotolerans
SRS30216]
Length = 153
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
L+ A+ + P + ++EA + L +L+ L AG++
Sbjct: 47 LVMLALWGNEPLSVKDLSEALQLDPPTLSPLLKRLEAAGLL 87
>gi|298528282|ref|ZP_07015686.1| transcriptional regulator, XRE family [Desulfonatronospira
thiodismutans ASO3-1]
gi|298511934|gb|EFI35836.1| transcriptional regulator, XRE family [Desulfonatronospira
thiodismutans ASO3-1]
Length = 109
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 20/49 (40%), Gaps = 5/49 (10%)
Query: 1 MHLTKRTDYGIRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKI 44
M + + Y +R + A + + ++AE IS L++I
Sbjct: 1 MKVRTYSRYTLRAISLLATLIKTGRLEKRIKTQELAERAGISRDLLYRI 49
>gi|126179069|ref|YP_001047034.1| putative transcriptional regulator [Methanoculleus marisnigri JR1]
gi|125861863|gb|ABN57052.1| putative transcriptional regulator [Methanoculleus marisnigri JR1]
Length = 523
Score = 34.5 bits (78), Expect = 5.6, Method: Composition-based stats.
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 4/74 (5%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
R++ + D P IAE ++ + L+ L G V + R+ R
Sbjct: 292 RLIFDTVLSADTPLTPKDIAERARLNPATVTAQLRRLEADGYVVSRPMRKRTSYEVRD-- 349
Query: 72 QITILDVVKATEES 85
+ +A
Sbjct: 350 --RLFWFWRAMRRP 361
>gi|292386163|gb|ADE22342.1| transcriptional regulator [Streptomyces galbus]
Length = 279
Score = 34.1 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 13 VLMYC-AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
L+ A + P+R+ Q+AE + ++++LQ LV G V T
Sbjct: 35 ALLELLAGRGEQPSRLDQLAEELDVPRSSMYQLLQTLVDCGWVRT 79
>gi|242240698|ref|YP_002988879.1| GntR family transcriptional regulator [Dickeya dadantii Ech703]
gi|242132755|gb|ACS87057.1| transcriptional regulator, GntR family [Dickeya dadantii Ech703]
Length = 232
Score = 34.1 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 15/97 (15%), Positives = 34/97 (35%), Gaps = 7/97 (7%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
H + ++E+ IS L ++ + L + G++ D +I+D+
Sbjct: 42 HPGQRLSEAALSESLAISRNTLREVFRLLTQEGLLRYEP---NRGVFVATPDMSSIIDIY 98
Query: 80 KATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALN 116
+ + EC A K + + + +A
Sbjct: 99 RV----RRIIECQALAKAYPMHPAVKTMRAAIERARQ 131
>gi|170698286|ref|ZP_02889362.1| transcriptional regulators-like protein [Burkholderia ambifaria
IOP40-10]
gi|170136777|gb|EDT05029.1| transcriptional regulators-like protein [Burkholderia ambifaria
IOP40-10]
Length = 177
Score = 34.1 bits (77), Expect = 5.6, Method: Composition-based stats.
Identities = 23/144 (15%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I L+Y A P +IAE ++ + L+ L + + V G R
Sbjct: 30 IHALLYLA---GRPVAADEIAETLNVARSNVSTSLKELQAWRLAKVVH--VLGDRRDHFE 84
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVL----RKALNAFFDVLTQY- 125
I ++ K E + ++ C + + R+ D L
Sbjct: 85 TSTDIWELFKLIVEGRR----QREIEPTLTVLRDCLTSPEIADESRETEQRIRDTLQFVE 140
Query: 126 SI----ECLVR-NRSSIKKIFNAG 144
++ + ++R ++ K G
Sbjct: 141 TLTTWSDEMLRLKPDTLMKALGIG 164
>gi|148239598|ref|YP_001224985.1| diaminopimelate epimerase [Synechococcus sp. WH 7803]
gi|147848137|emb|CAK23688.1| Diaminopimelate epimerase [Synechococcus sp. WH 7803]
Length = 368
Score = 34.1 bits (77), Expect = 5.7, Method: Composition-based stats.
Identities = 7/44 (15%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
+C K C C + +A L S++ ++
Sbjct: 309 FDCANDCKEGCRQPDRC----LREEAQAKVQAFLASTSLDSMIN 348
>gi|291455982|ref|ZP_06595372.1| transcriptional regulator, AraC family [Bifidobacterium breve DSM
20213]
gi|291382391|gb|EFE89909.1| transcriptional regulator, AraC family [Bifidobacterium breve DSM
20213]
Length = 291
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKIL----QPLVKAGIVETVRGRRGGVRLC 67
R + Y H D + IA+A CIS +L ++ + ++ + + + +
Sbjct: 184 RAVAYVQEHADETLSVQMIADALCISRGYLHQLFIKYLHTTPQQFVINSKVQKASELLIK 243
Query: 68 RPADQITILDVV 79
I ++
Sbjct: 244 TRMPIARIAELC 255
>gi|91779399|ref|YP_554607.1| IclR family transcriptional regulator [Burkholderia xenovorans
LB400]
gi|91692059|gb|ABE35257.1| transcriptional regulator, IclR family [Burkholderia xenovorans
LB400]
Length = 250
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 11/62 (17%), Positives = 29/62 (46%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+++D P ++ IA+ + + L ++L L G+V G++ + Q+ + +
Sbjct: 19 VNSDGPVSLADIAQDVALPKASLHRMLASLEAGGLVIREPGQKNAYVIGPRLAQLALGVM 78
Query: 79 VK 80
+
Sbjct: 79 MH 80
>gi|57234340|ref|YP_181632.1| hypothetical protein DET0907 [Dehalococcoides ethenogenes 195]
gi|57224788|gb|AAW39845.1| conserved hypothetical protein [Dehalococcoides ethenogenes 195]
Length = 111
Score = 34.1 bits (77), Expect = 5.8, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
T++ + VL + A H+ +IAE I+E + KI+ L G +
Sbjct: 8 TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLEAEGYI 52
>gi|332528108|ref|ZP_08404139.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus
JA2]
gi|332112679|gb|EGJ12472.1| IclR family transcriptional regulator [Rubrivivax benzoatilyticus
JA2]
Length = 243
Score = 34.1 bits (77), Expect = 6.0, Method: Composition-based stats.
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 13 VLMY-CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
L+ A H D P + +I+E + +IL L +V
Sbjct: 7 ALLDMLAAHPD-PVSLKEISERTGLHPSTAHRILNDLTIGRLV 48
>gi|330963826|gb|EGH64086.1| AsnC family transcriptional regulator [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 156
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 16/91 (17%), Positives = 31/91 (34%), Gaps = 12/91 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLC---- 67
R ++ + D ++ IAE + ++ +Q L ++GI+E +L
Sbjct: 6 RAILDI-LQTDCTRSVADIAERIGLGSTACWRRIQKLEESGIIERRVALLNPQQLNVSVS 64
Query: 68 -------RPADQITILDVVKATEESFFVAEC 91
+ + A E V EC
Sbjct: 65 VFAAIRTHQHNAAWLEKFHAAVGELPEVVEC 95
>gi|134099321|ref|YP_001104982.1| IclR family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|291007292|ref|ZP_06565265.1| IclR family transcriptional regulator [Saccharopolyspora
erythraea NRRL 2338]
gi|133911944|emb|CAM02057.1| transcriptional regulator, IclR family [Saccharopolyspora
erythraea NRRL 2338]
Length = 264
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
+R+L A ++ +A+A +S F++L L +AG+V+ +
Sbjct: 18 AVRLLRELAAQPRTGATVTTLAKATGLSRPTAFRLLYSLEQAGLVDRIDTNYVLGW 73
>gi|288923792|ref|ZP_06417882.1| hypothetical protein FrEUN1fDRAFT_7580 [Frankia sp. EUN1f]
gi|288344866|gb|EFC79305.1| hypothetical protein FrEUN1fDRAFT_7580 [Frankia sp. EUN1f]
Length = 253
Score = 34.1 bits (77), Expect = 6.1, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 38/110 (34%), Gaps = 4/110 (3%)
Query: 25 NRISQIAEACCISELFLFKIL--QPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKAT 82
++ + E L K+L + G + GG R ++ ++ +V +A
Sbjct: 116 VELAGLVEKAVEDLGVLRKVLDRRGAPAWGWIRNRYDHPGGWIARRKKNKTSVHNVPRAF 175
Query: 83 EESFFVAECFASHKI-DCPLVGSCGLTSVLRKALNAF-FDVLTQYSIECL 130
C D P + + ++L +A A D L + + +
Sbjct: 176 ARIAPALLCNPETGEIDMPRITERQVETILIRAQRAVTMDRLKKTGLGDM 225
>gi|145295747|ref|YP_001138568.1| hypothetical protein cgR_1673 [Corynebacterium glutamicum R]
gi|140845667|dbj|BAF54666.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 101
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L+ H +S++A+ ++ LQ L G+VE+ + R A
Sbjct: 27 LRLLIALHYHGPGEATVSELADIVGVTLPTASAALQLLADNGVVESFKEGRVTRYKLVDA 86
Query: 71 DQITILD 77
T+L
Sbjct: 87 TTHTLLH 93
>gi|76802391|ref|YP_327399.1| hypothetical protein NP3506A [Natronomonas pharaonis DSM 2160]
gi|76558256|emb|CAI49844.1| conserved hypothetical protein [Natronomonas pharaonis DSM 2160]
Length = 179
Score = 34.1 bits (77), Expect = 6.2, Method: Composition-based stats.
Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 1/103 (0%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L+ ++ + IAE + + +Q L +VE V G +GG + A
Sbjct: 17 LINLYRESESAVKGEDIAEKVDRNPGTIRNQMQSLKALQLVEGVPGPKGGYKPTATAYDA 76
Query: 74 -TILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKAL 115
I ++ +A + F + + L +A
Sbjct: 77 LKIQEMEQAADVPFNHEGDLVEEANVQEIDLTSVHHPELCRAE 119
>gi|116671574|ref|YP_832507.1| ArsR family transcriptional regulator [Arthrobacter sp. FB24]
gi|116611683|gb|ABK04407.1| transcriptional regulator, ArsR family [Arthrobacter sp. FB24]
Length = 125
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 24/70 (34%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
IR+L A D +S + + L + L L + +V +VR
Sbjct: 26 IRILELLAAAPDTTAPVSFLLAETGLEASHLSQHLATLRRHKVVTSVRSANAVTYRLAHP 85
Query: 71 DQITILDVVK 80
+L + +
Sbjct: 86 KIAELLAISR 95
>gi|89053799|ref|YP_509250.1| hypothetical protein Jann_1308 [Jannaschia sp. CCS1]
gi|88863348|gb|ABD54225.1| hypothetical protein Jann_1308 [Jannaschia sp. CCS1]
Length = 74
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV----LRKALNAFFDV 121
+ RPA +IT+ DV A S+ E + DC + + L V ++KA D
Sbjct: 1 MSRPATEITVADVYIALGMSWTGPEDGEDNPPDCKIEAA--LHGVVDRAMQKAETVLVDE 58
Query: 122 LTQYSIECL 130
L +I L
Sbjct: 59 LAIVTISDL 67
>gi|328479867|gb|EGF48953.1| ser/Thr protein phosphatase family [Lactobacillus rhamnosus MTCC
5462]
Length = 269
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 4 TKRTDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
T DY + + + + +++A+A + +L + L G T
Sbjct: 183 TTYADYALLSLHHGAMTDLDLRQVPYDAAAELAQAKQAALPYLE-VYTKLRHTGATSTHN 241
Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85
+ + + ++ +
Sbjct: 242 APYLAQFEQKHDYRAEVTTFLRQLKPH 268
>gi|258507282|ref|YP_003170033.1| ser/Thr protein phosphatase family [Lactobacillus rhamnosus GG]
gi|257147209|emb|CAR86182.1| Ser/Thr protein phosphatase family [Lactobacillus rhamnosus GG]
gi|259648648|dbj|BAI40810.1| putative serine-threonine protein phosphatase [Lactobacillus
rhamnosus GG]
Length = 282
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 4 TKRTDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
T DY + + + + +++A+A + +L + L G T
Sbjct: 196 TTYADYALLSLHHGAMTDLDLRQVPYDAAAELAQAKQAALPYLE-VYTKLRHTGATSTHN 254
Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85
+ + + ++ +
Sbjct: 255 APYLAQFEQKHDYRAEVTTFLRQLKPH 281
>gi|229550825|ref|ZP_04439550.1| metallophosphoesterase [Lactobacillus rhamnosus LMS2-1]
gi|258538463|ref|YP_003172962.1| ser/Thr protein phosphatase family [Lactobacillus rhamnosus Lc 705]
gi|229315821|gb|EEN81794.1| metallophosphoesterase [Lactobacillus rhamnosus LMS2-1]
gi|257150139|emb|CAR89111.1| Ser/Thr protein phosphatase family [Lactobacillus rhamnosus Lc 705]
Length = 282
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 4 TKRTDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
T DY + + + + +++A+A + +L + L G T
Sbjct: 196 TTYADYALLSLHHGAMTDLDLRQVPYDAAAELAQAKQAALPYLE-VYTKLRHTGATSTHN 254
Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85
+ + + ++ +
Sbjct: 255 APYLAQFEQKHDYRAEVTTFLRQLKPH 281
>gi|199597954|ref|ZP_03211379.1| Diadenosine tetraphosphatase related serine/threonine protein
phosphatase [Lactobacillus rhamnosus HN001]
gi|199591211|gb|EDY99292.1| Diadenosine tetraphosphatase related serine/threonine protein
phosphatase [Lactobacillus rhamnosus HN001]
Length = 282
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 9/87 (10%), Positives = 26/87 (29%), Gaps = 6/87 (6%)
Query: 4 TKRTDYGIR-----VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR 58
T DY + + + + +++A+A + +L + L G T
Sbjct: 196 TTYADYALLSLHHGAMTDLDLRQVPYDAAAELAQAKQAALPYLE-VYTKLRHTGATSTHN 254
Query: 59 GRRGGVRLCRPADQITILDVVKATEES 85
+ + + ++ +
Sbjct: 255 APYLAQFEQKHDYRAEVTTFLRQLKPH 281
>gi|73748676|ref|YP_307915.1| hypothetical protein cbdb_A858 [Dehalococcoides sp. CBDB1]
gi|147669435|ref|YP_001214253.1| transcriptional regulator, TrmB [Dehalococcoides sp. BAV1]
gi|289432702|ref|YP_003462575.1| hypothetical protein DehalGT_0753 [Dehalococcoides sp. GT]
gi|73660392|emb|CAI82999.1| conserved hypothetical protein [Dehalococcoides sp. CBDB1]
gi|146270383|gb|ABQ17375.1| transcriptional regulator, TrmB [Dehalococcoides sp. BAV1]
gi|288946422|gb|ADC74119.1| Helix-turn-helix type 11 domain protein [Dehalococcoides sp. GT]
Length = 111
Score = 34.1 bits (77), Expect = 6.3, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
T++ + VL + A H+ +IAE I+E + KI+ L G +
Sbjct: 8 TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLETEGYI 52
>gi|114706146|ref|ZP_01439049.1| transcriptional regulator (MarR family) protein [Fulvimarina pelagi
HTCC2506]
gi|114538992|gb|EAU42113.1| transcriptional regulator (MarR family) protein [Fulvimarina pelagi
HTCC2506]
Length = 167
Score = 34.1 bits (77), Expect = 6.6, Method: Composition-based stats.
Identities = 19/125 (15%), Positives = 43/125 (34%), Gaps = 8/125 (6%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQI 73
L+ + D + +S IA+ ++ + +L L K+G VE +R + +
Sbjct: 43 LVMLVLWQDGTSTVSAIAKRLELTPNSVTPLLDRLEKSGFVERMRNSEDRRVIHVRLSER 102
Query: 74 TILDVVKATEES-FFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVR 132
++A + +C L S+ + +IE + R
Sbjct: 103 --GMALEAVAADAQALVQCRTGLSDTPLAELREQLRSLSAQLFKN-----ESRTIEEIRR 155
Query: 133 NRSSI 137
+++
Sbjct: 156 EEAAV 160
>gi|300787330|ref|YP_003767621.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299796844|gb|ADJ47219.1| ArsR family transcriptional regulator [Amycolatopsis mediterranei
U32]
Length = 136
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 14/72 (19%), Positives = 26/72 (36%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
I+VL A + ++++ E L + L L + G+V + R
Sbjct: 28 IQVLEVLAAAGEEGTPVTRLLEVTDCEASHLSQHLAVLRRTGVVTSTRTGNAVEYWLAQP 87
Query: 71 DQITILDVVKAT 82
+L V +A
Sbjct: 88 LVAELLVVARAF 99
>gi|15964097|ref|NP_384450.1| putative transcription regulator protein [Sinorhizobium meliloti
1021]
gi|307301241|ref|ZP_07581003.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
BL225C]
gi|307317912|ref|ZP_07597349.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
AK83]
gi|15073273|emb|CAC41781.1| Putative transcription regulator [Sinorhizobium meliloti 1021]
gi|306896314|gb|EFN27063.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
AK83]
gi|306903697|gb|EFN34284.1| transcriptional regulator, AsnC family [Sinorhizobium meliloti
BL225C]
Length = 145
Score = 34.1 bits (77), Expect = 6.7, Method: Composition-based stats.
Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 16/122 (13%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP-- 69
R+L A + + ++A+ +S + L+ L + G+++ RL P
Sbjct: 8 RILEILAANA--RVSLKELAQEAGLSSPSAAERLRKLEERGVLDGFTISVNPARLGYPLQ 65
Query: 70 ------ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
+ V + +E+ EC C + +L + + +L
Sbjct: 66 AIVRIRPMPGMLHIVERLIQETPEFIECDK------VTGDDCFIAKMLVRDMAELDTILD 119
Query: 124 QY 125
+
Sbjct: 120 RI 121
>gi|270308179|ref|YP_003330237.1| transcriptional regulator [Dehalococcoides sp. VS]
gi|270154071|gb|ACZ61909.1| transcriptional regulator [Dehalococcoides sp. VS]
Length = 111
Score = 34.1 bits (77), Expect = 6.9, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 7 TDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIV 54
T++ + VL + A H+ +IAE I+E + KI+ L G +
Sbjct: 8 TNHAL-VLSFLARHS--RITAREIAENIHITERAVRKIIADLETEGYI 52
>gi|111020727|ref|YP_703699.1| transcriptional regulator [Rhodococcus jostii RHA1]
gi|110820257|gb|ABG95541.1| possible transcriptional regulator [Rhodococcus jostii RHA1]
Length = 340
Score = 34.1 bits (77), Expect = 7.0, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 12 RVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
R++M A + P ++ IA +++ + ++ L +AG + R+
Sbjct: 49 RIVMLTELLADEPETPRSLADIARHLGVAKATCYPMVVALTEAGWLIRHPSRKT---YRL 105
Query: 69 PADQITILDVVKATEESFFVAE 90
I + + + +A
Sbjct: 106 GPALIPVGRAAETATDVVDLAR 127
>gi|123414216|ref|XP_001304452.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121885904|gb|EAX91522.1| hypothetical protein TVAG_472640 [Trichomonas vaginalis G3]
Length = 177
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 78 VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ--YSIECLVRNRS 135
++++ F+ + +K + VL K +A D+++ ++ + +
Sbjct: 79 ILESVTAVKFIVAKLSENKEEKQEESIDKTILVLNKLQDAILDLISSEETTLSDIFNSER 138
Query: 136 SIKKIF 141
I++I
Sbjct: 139 KIEEIL 144
>gi|19552837|ref|NP_600839.1| transcriptional regulator [Corynebacterium glutamicum ATCC 13032]
gi|62390508|ref|YP_225910.1| transcription regulator ArsR [Corynebacterium glutamicum ATCC
13032]
gi|21324394|dbj|BAB99018.1| Predicted transcriptional regulators [Corynebacterium glutamicum
ATCC 13032]
gi|41325845|emb|CAF21634.1| Bacterial regulatory protein, arsR family [Corynebacterium
glutamicum ATCC 13032]
Length = 101
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 15/67 (22%), Positives = 28/67 (41%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+R+L+ H +S++A+ ++ LQ L G+VE+ + R A
Sbjct: 27 LRLLIALHYHGPGEATVSELADIVGVTLPTASAALQLLADNGVVESFKEGRVTRYKLVDA 86
Query: 71 DQITILD 77
T+L
Sbjct: 87 TTHTLLH 93
>gi|83950698|ref|ZP_00959431.1| transcriptional regulator, AraC family protein [Roseovarius
nubinhibens ISM]
gi|83838597|gb|EAP77893.1| transcriptional regulator, AraC family protein [Roseovarius
nubinhibens ISM]
Length = 297
Score = 34.1 bits (77), Expect = 7.3, Method: Composition-based stats.
Identities = 18/113 (15%), Positives = 33/113 (29%), Gaps = 10/113 (8%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
RV+ + + H D P I +A +S + + + V+ V+ R + A
Sbjct: 193 RVIAHLSDHLDAPVSIDDLASRAGMSRAAFHRRFKQATRMAPVQFVKSMRLNKAAMKIAS 252
Query: 72 QITILDVVKATEE--SFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
T+ + + F H P +A L
Sbjct: 253 GATVNAAAQEVGYVSPSQFSREFKRHYGQSPRQ--------WAEAQQLALGAL 297
>gi|307596100|ref|YP_003902417.1| transcriptional regulator TrmB [Vulcanisaeta distributa DSM
14429]
gi|307551301|gb|ADN51366.1| transcriptional regulator, TrmB [Vulcanisaeta distributa DSM
14429]
Length = 176
Score = 33.7 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
+++ TD IRVL + +S+IAE +S + +++ L+ L+ GI TV
Sbjct: 7 VSRFTDIEIRVLNVL--RENARASVSEIAERLGVSRVTVYRALRSLINKGIKFTVDVPEN 64
Query: 63 GVRLCRPADQ 72
R +
Sbjct: 65 SPRAFIITRE 74
>gi|226945752|ref|YP_002800825.1| sensory histidine protein kinase, two component [Azotobacter
vinelandii DJ]
gi|226720679|gb|ACO79850.1| sensory histidine protein kinase, two component [Azotobacter
vinelandii DJ]
Length = 443
Score = 33.7 bits (76), Expect = 7.4, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR------RGGVRLC 67
L + P Q+A ++ L + L L + G++ + R
Sbjct: 233 LRDLSHELRTPLSRLQVAGEAGLNGTELEERL--LREVGVMRALIDSTLELAWMDTERPQ 290
Query: 68 RPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
P + + + + + E + ++ C L C + L A ++L
Sbjct: 291 PPLEPVAVASLWEILREDACFESGWNPRRLPCRLPPDCLVWGHLNSLARALENILRN 347
>gi|55377094|ref|YP_134944.1| transcription regulator [Haloarcula marismortui ATCC 43049]
gi|55229819|gb|AAV45238.1| transcription regulator [Haloarcula marismortui ATCC 43049]
Length = 356
Score = 33.7 bits (76), Expect = 7.6, Method: Composition-based stats.
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 15 MYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQ 72
Y A+ P +AE +S+ +++ I L G V R V P +
Sbjct: 28 TYLAVVEKGPATARTVAETAGVSKSYVYDICDSLAVDGFVSVDDHRTPTVIRATPPSE 85
>gi|229592759|ref|YP_002874878.1| putative AsnC family regulatory protein [Pseudomonas fluorescens
SBW25]
gi|229364625|emb|CAY52534.1| putative AsnC-family regulatory protein [Pseudomonas fluorescens
SBW25]
Length = 153
Score = 33.7 bits (76), Expect = 7.7, Method: Composition-based stats.
Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 12/143 (8%)
Query: 14 LMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR--------RGGVR 65
++ A+ D +Q+A +S + + + L G++ + +
Sbjct: 7 MLLSALLEDGRASYAQLARTVNLSAPAVAERVAKLEACGVITGYQAKVDLSKVGLPIQCV 66
Query: 66 LCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCG-LTSVLRKALNAFFDV-LT 123
+ V A E + EC C ++ + L +N +
Sbjct: 67 IELRLTNHGSQKVYDALAEIPELTECHRVTGDPCVIMQAAVGSMPELENLINRIAKFGFS 126
Query: 124 QYS--IECLVRNRSSIKKIFNAG 144
+ S + + R + ++ G
Sbjct: 127 KTSIILSSAIERRVPLGQLEGNG 149
>gi|187734623|ref|YP_001876735.1| transcriptional regulator, MarR family [Akkermansia muciniphila
ATCC BAA-835]
gi|187424675|gb|ACD03954.1| transcriptional regulator, MarR family [Akkermansia muciniphila
ATCC BAA-835]
Length = 141
Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 20/109 (18%), Positives = 32/109 (29%), Gaps = 7/109 (6%)
Query: 12 RVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPAD 71
RVL Y + I +S I+Q L + G V T G
Sbjct: 37 RVLAYLMSRDGENVSQRDIERHLGVSHTTAKGIVQRLEQKGWVTTAFDSEDGRL-----K 91
Query: 72 QITILDVVKATEESFFVAECFASHK--IDCPLVGSCGLTSVLRKALNAF 118
+ + D+ + ES + P L +LR+ +
Sbjct: 92 NVYLTDMSRGVHESICQQIGVIENTLLDGVPEESRSMLRDLLRRMYDNL 140
>gi|156935229|ref|YP_001439144.1| hypothetical protein ESA_03080 [Cronobacter sakazakii ATCC BAA-894]
gi|156533483|gb|ABU78309.1| hypothetical protein ESA_03080 [Cronobacter sakazakii ATCC BAA-894]
Length = 156
Score = 33.7 bits (76), Expect = 7.8, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 40/128 (31%), Gaps = 7/128 (5%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
IR + + ++IA+ + + +L + + G + RL
Sbjct: 4 IRAKILAIMQAGKVMTTTEIADRTGNTIEAVRSVLNRMKRDGELTGTSQNPKRWRLVDSV 63
Query: 71 DQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECL 130
+ +++ +E V AS V VL LT+ S+ L
Sbjct: 64 NHR--AELIACVKEHGAVTAIQASEITGLSPVYCINTMRVLE-----MNGELTRKSVRAL 116
Query: 131 VRNRSSIK 138
+ + +
Sbjct: 117 LSDGRKTR 124
>gi|226362971|ref|YP_002780753.1| IclR family transcriptional regulator [Rhodococcus opacus B4]
gi|226241460|dbj|BAH51808.1| putative IclR family transcriptional regulator [Rhodococcus
opacus B4]
Length = 301
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
Query: 12 RVLMY---CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCR 68
R++M A + P ++ IA +++ + ++ L +AG + R+
Sbjct: 10 RIVMLTELLADEPETPRSLADIARHLGVAKATCYPMVVALTEAGWLIRHPTRKT---YRL 66
Query: 69 PADQITILDVVKATEESFFVAE 90
I + + + +A
Sbjct: 67 GPALIPVGRAAETATDVVDLAR 88
>gi|29832122|ref|NP_826756.1| IclR family transcriptional regulator [Streptomyces avermitilis
MA-4680]
gi|29609240|dbj|BAC73291.1| putative IclR-family transcriptional regulator [Streptomyces
avermitilis MA-4680]
Length = 263
Score = 33.7 bits (76), Expect = 7.9, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A D P R++++A+ + ++ +LQ LV G V T
Sbjct: 26 LAARGDRPARLTELADELDVPRSSMYALLQTLVTRGWVRT 65
>gi|296284957|ref|ZP_06862955.1| putative transcriptional regulator, ArsR family protein
[Citromicrobium bathyomarinum JL354]
Length = 108
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 11 IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPA 70
+ V+ A H + +AE +S+ L + L + G+V++ R +
Sbjct: 35 LMVMCKLAEHGEMRVNA--LAEEVGLSQSALSQHLAKMRAEGLVDSRREAQTAWYRIADP 92
Query: 71 DQITI 75
T+
Sbjct: 93 RCRTL 97
>gi|158318205|ref|YP_001510713.1| ATP-dependent DNA helicase RecQ [Frankia sp. EAN1pec]
gi|158113610|gb|ABW15807.1| ATP-dependent DNA helicase, RecQ family [Frankia sp. EAN1pec]
Length = 624
Score = 33.7 bits (76), Expect = 8.1, Method: Composition-based stats.
Identities = 14/103 (13%), Positives = 28/103 (27%)
Query: 10 GIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRP 69
+R + H + P +A+A + + L +++ L +A V R P
Sbjct: 417 ALRRVAVLLGHAEEPVSARALADAAGVGDTALTRMVDLLERADAVTVHDDGRIERSAGAP 476
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLR 112
+ V+ C +L
Sbjct: 477 EPEQAAGRAVELAAARVEFERSRVDMMRGYAETRDCRRRYLLA 519
>gi|307325332|ref|ZP_07604535.1| transcriptional regulator, IclR family [Streptomyces
violaceusniger Tu 4113]
gi|306889136|gb|EFN20119.1| transcriptional regulator, IclR family [Streptomyces
violaceusniger Tu 4113]
Length = 267
Score = 33.7 bits (76), Expect = 8.2, Method: Composition-based stats.
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 17 CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVET 56
A + P R+ ++AE + ++ +L+ L+ G V T
Sbjct: 26 LAARGEQPARLRELAEELRVPRSSMYALLKTLIDRGWVRT 65
>gi|146307067|ref|YP_001187532.1| AsnC family transcriptional regulator [Pseudomonas mendocina ymp]
gi|145575268|gb|ABP84800.1| transcriptional regulator, AsnC family [Pseudomonas mendocina ymp]
Length = 145
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 14/116 (12%)
Query: 18 AIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVE--------TVRGRRGGVRLCRP 69
A+ D + +A+ +S + + L+ L + G+++ + G + +
Sbjct: 12 ALMEDSRRSLKALAQISGLSSPSVAERLRRLEERGVLKGYRVEIDPSHFGYQLQAIVRVR 71
Query: 70 ADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQY 125
+ +V + + + EC DC + + +++ +VL +
Sbjct: 72 PLPGKLHEVERLIQATPEFTECDKVTGEDC------FIARLHVRSMEQLDEVLDRI 121
>gi|302866415|ref|YP_003835052.1| regulatory protein MarR [Micromonospora aurantiaca ATCC 27029]
gi|315502825|ref|YP_004081712.1| regulatory protein marr [Micromonospora sp. L5]
gi|302569274|gb|ADL45476.1| regulatory protein MarR [Micromonospora aurantiaca ATCC 27029]
gi|315409444|gb|ADU07561.1| regulatory protein MarR [Micromonospora sp. L5]
Length = 166
Score = 33.7 bits (76), Expect = 8.6, Method: Composition-based stats.
Identities = 23/134 (17%), Positives = 37/134 (27%), Gaps = 16/134 (11%)
Query: 2 HLTKRTDYG-----------IRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVK 50
L+ Y + L Y A + QIAE ++ + +L+ L +
Sbjct: 27 RLSMVFRYAIAERLGLAVSDLECLDYLA--DIGSATAGQIAERTNLTTGAVTSMLRRLQQ 84
Query: 51 AGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSV 110
AG V T R R+ I D+ + AE L
Sbjct: 85 AGYVTTERDPADRRRVVVTIRPERIADLER---PYERFAERAERLVEGYSAEEVRLLVRH 141
Query: 111 LRKALNAFFDVLTQ 124
+ + L
Sbjct: 142 HDRLQAMYLAELDH 155
>gi|14521903|ref|NP_127380.1| ArsR family transcriptional regulator [Pyrococcus abyssi GE5]
gi|5459123|emb|CAB50609.1| Transcriptional regulatory protein, arsR family [Pyrococcus abyssi
GE5]
Length = 184
Score = 33.7 bits (76), Expect = 8.7, Method: Composition-based stats.
Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 22/145 (15%)
Query: 3 LTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
L+ RT + + D+P +S++AE + +++ ++ L KAG+VE V
Sbjct: 17 LSDRTR-----MKILELLRDHPMSVSELAERLGKDKSTVYRHIKALEKAGLVEVVERIGN 71
Query: 63 GVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVL 122
R A + A + G L VL +A
Sbjct: 72 ETLYGRVA-----YIFLIAVGSDKE----SEEFREAYLAEGIAKLVEVLERAGVKIK--- 119
Query: 123 TQYSIECLVRN-----RSSIKKIFN 142
+ E +V+ +KI +
Sbjct: 120 DRKRFEDIVKKVFEGIEDESQKILS 144
>gi|170769104|ref|ZP_02903557.1| quinolinate synthetase complex, A subunit [Escherichia albertii
TW07627]
gi|170122176|gb|EDS91107.1| quinolinate synthetase complex, A subunit [Escherichia albertii
TW07627]
Length = 344
Score = 33.7 bits (76), Expect = 8.9, Method: Composition-based stats.
Identities = 18/132 (13%), Positives = 40/132 (30%), Gaps = 24/132 (18%)
Query: 19 IHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDV 78
+H + P I ++A+A + L + L ++ +
Sbjct: 222 VHPESPQSIVEMADAIGSTSQ-LINAAKTLPHQQLIVATDR-------------GIFYKM 267
Query: 79 VKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ------YSIECLVR 132
+A + + A C C + A + L Q +E ++R
Sbjct: 268 QQAVPDKVLLEAPTAGQGATCRSCAHCP-WMAMNGLQ-AIVEALEQGGSKHEVHVEEMLR 325
Query: 133 NRS--SIKKIFN 142
R+ + ++ N
Sbjct: 326 ERAQVPLNRMLN 337
>gi|239980272|ref|ZP_04702796.1| MarR family transcriptional regulator [Streptomyces albus J1074]
Length = 160
Score = 33.7 bits (76), Expect = 9.2, Method: Composition-based stats.
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 11 IRVLMY--CAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
+ +++ A P S++AE +++ +I+ L + G V GG R
Sbjct: 45 VHGMVFQLLAR---TPVTSSELAERLGVTKQAAGQIVDDLERRGYVRRDPHPAGGRR 98
>gi|256379974|ref|YP_003103634.1| MarR family transcriptional regulator [Actinosynnema mirum DSM
43827]
gi|255924277|gb|ACU39788.1| transcriptional regulator, MarR family [Actinosynnema mirum DSM
43827]
Length = 164
Score = 33.7 bits (76), Expect = 9.3, Method: Composition-based stats.
Identities = 13/60 (21%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
T+Y + L+ A + R+S++A A +S + +++ +V+ G++E + G
Sbjct: 43 SMTEYAV--LLMLAEAPERRLRMSELASAVALSGSRVTRVVDAMVRLGLLEKEKAPDDGR 100
>gi|290963236|ref|YP_003494418.1| MarR family transcriptional regulator [Streptomyces scabiei 87.22]
gi|260652762|emb|CBG75895.1| putative MarR family transcriptional regulator [Streptomyces
scabiei 87.22]
Length = 187
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 19/114 (16%), Positives = 35/114 (30%), Gaps = 4/114 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
+YG+ + + R+S +A S L +++ L + G V G
Sbjct: 63 THFEYGV--MAALSESPRRELRMSDLAACAEGSLSRLSQVVARLERKGYVHRRPDPADGR 120
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAF 118
++ A E + + LT V R+ L+A
Sbjct: 121 YTLATLTDEGHQKMLDAAPEHVALVRRLVFDPLT--RTQVKQLTQVSRRILHAI 172
>gi|238022761|ref|ZP_04603187.1| hypothetical protein GCWU000324_02672 [Kingella oralis ATCC 51147]
gi|237865964|gb|EEP67100.1| hypothetical protein GCWU000324_02672 [Kingella oralis ATCC 51147]
Length = 396
Score = 33.7 bits (76), Expect = 9.5, Method: Composition-based stats.
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 20 HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVV 79
+ + + + +L L G V R GG LCR D+I + D+
Sbjct: 298 RENRVLTLRDFRQRLNVGYDRAELLLLRLDNLGYV---ARRAGGWVLCRSPDEIGLGDLF 354
Query: 80 KATEESFFVAECFAS 94
+A + C
Sbjct: 355 RAFVFDADNSVCDDE 369
>gi|114705640|ref|ZP_01438543.1| regulatory protein GntR, HTH:GntR, C-terminal [Fulvimarina pelagi
HTCC2506]
gi|114538486|gb|EAU41607.1| regulatory protein GntR, HTH:GntR, C-terminal [Fulvimarina pelagi
HTCC2506]
Length = 235
Score = 33.7 bits (76), Expect = 9.6, Method: Composition-based stats.
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 6/95 (6%)
Query: 29 QIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVRLCRPADQITILDVVKATEESFFV 88
+I++ +S + + + L G+V+ R +R P D + DV+ A E
Sbjct: 46 EISQRLGMSRTPVHQAIIQLQAEGMVDLRSKRGVVIRALSPDDMREVYDVIVAVEGMAAF 105
Query: 89 AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLT 123
C L + A L
Sbjct: 106 IIASLPAS---EREAIC---DALEELNAAMERALE 134
>gi|311893813|dbj|BAJ26221.1| putative MarR family transcriptional regulator [Kitasatospora setae
KM-6054]
Length = 177
Score = 33.3 bits (75), Expect = 9.6, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 10 GIR---VLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRG 62
G+R V+ +H P I ++AE+ + L + + + +AG VETV G
Sbjct: 51 GLRSSFVMELLRLHARGPMTIGELAESVHRTHSALSQKVAAMRRAGWVETVPGADA 106
>gi|330466817|ref|YP_004404560.1| regulatory protein MarR [Verrucosispora maris AB-18-032]
gi|328809788|gb|AEB43960.1| regulatory protein MarR [Verrucosispora maris AB-18-032]
Length = 158
Score = 33.3 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 4/117 (3%)
Query: 5 KRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGV 64
DY VL+ + R+ ++AE S L + + + G+V + G
Sbjct: 38 SLADY--HVLVLLSEVPGQRLRMGELAERLVFSPSRLTYQISSMQRRGLVARQPCAQDGR 95
Query: 65 RLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDV 121
+L + +A + +D +C + +
Sbjct: 96 GSEAVLTAAGLLALREAAPQHLHSVRTHLMDDLD-DAEIACLTR-IFTRLGQRLQAT 150
>gi|317035149|ref|XP_001401207.2| O-methyltransferase [Aspergillus niger CBS 513.88]
Length = 419
Score = 33.3 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 12/80 (15%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 11 IRVLMYCAI-----HNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVR-GRRGGV 64
+R+ M I + P + +A + ++L+ L G V
Sbjct: 73 VRIAMDLGIFSTLSERNGPVTLEDLAATKGADLVLTERVLRILAGIGYVAEHDVRVYIPT 132
Query: 65 RLCRPADQITILDVVKATEE 84
+ R VV+ +
Sbjct: 133 TMTRQMTDRLSGAVVRFIFD 152
>gi|258652485|ref|YP_003201641.1| transcriptional regulator [Nakamurella multipartita DSM 44233]
gi|258555710|gb|ACV78652.1| putative transcriptional regulator [Nakamurella multipartita DSM
44233]
Length = 237
Score = 33.3 bits (75), Expect = 9.7, Method: Composition-based stats.
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 6 RTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGRRGGVR 65
RT + L+ A D P + +A IS + + L L+ G V + G R
Sbjct: 23 RTREAVIQLL-LA---DGPITAADLAARLGISPAAVRRHLDQLLAEGAVRSREASARGQR 78
Query: 66 LCRPADQITI 75
+ +
Sbjct: 79 GRGRPARSYL 88
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.309 0.149 0.410
Lambda K H
0.267 0.0459 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,394,727,195
Number of Sequences: 14124377
Number of extensions: 48513937
Number of successful extensions: 276483
Number of sequences better than 10.0: 4213
Number of HSP's better than 10.0 without gapping: 3484
Number of HSP's successfully gapped in prelim test: 729
Number of HSP's that attempted gapping in prelim test: 268129
Number of HSP's gapped (non-prelim): 4247
length of query: 144
length of database: 4,842,793,630
effective HSP length: 108
effective length of query: 36
effective length of database: 3,317,360,914
effective search space: 119424992904
effective search space used: 119424992904
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (20.6 bits)
S2: 76 (33.7 bits)