BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780620|ref|YP_003065033.1| iron-responsive
transcriptional regulator [Candidatus Liberibacter asiaticus str.
psy62]
         (144 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780620|ref|YP_003065033.1| iron-responsive transcriptional regulator [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 144

 Score =  296 bits (758), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 144/144 (100%), Positives = 144/144 (100%)

Query: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60
           MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR
Sbjct: 1   MHLTKRTDYGIRVLMYCAIHNDYPNRISQIAEACCISELFLFKILQPLVKAGIVETVRGR 60

Query: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120
           RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD
Sbjct: 61  RGGVRLCRPADQITILDVVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFD 120

Query: 121 VLTQYSIECLVRNRSSIKKIFNAG 144
           VLTQYSIECLVRNRSSIKKIFNAG
Sbjct: 121 VLTQYSIECLVRNRSSIKKIFNAG 144


>gi|254780917|ref|YP_003065330.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 596

 Score = 23.1 bits (48), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 78  VVKATEESFFVAECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQYSIECLVRNRSS 136
           VV +T    F+ +  AS   +  L  SC   S++ +     +  L QY +E    N+SS
Sbjct: 74  VVSSTVAGIFIVKGIASFVQNYYL--SCAGNSIIAEQQRKIYRRLLQYGMEFYDSNQSS 130


>gi|255764513|ref|YP_003065530.2| glutamyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 492

 Score = 22.7 bits (47), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 75  ILDVVKATEESFFVAECFASHKIDCPL 101
           I+D++K T+E F V + +    I+  L
Sbjct: 399 IIDILKTTQEEFEVIQIWKRENIETAL 425


>gi|254781149|ref|YP_003065562.1| replicative DNA helicase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 266

 Score = 22.7 bits (47), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 9/36 (25%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 89  AECFASHKIDCPLVGSCGLTSVLRKALNAFFDVLTQ 124
           A+  A H  D     +C   +++RK++ +F D++++
Sbjct: 55  AKALALHTSDP----TCNTATLIRKSMQSFEDIISE 86


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 21.9 bits (45), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 74  TILDVVKATEESFFVAECFASHKIDCPLVG 103
           T L V+K TE+ F +AE     + +  ++G
Sbjct: 606 TRLSVLKNTEDGFLIAEEDLKQRKEGEILG 635


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.329    0.141    0.428 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,774
Number of Sequences: 1233
Number of extensions: 2838
Number of successful extensions: 10
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 328,796
effective HSP length: 66
effective length of query: 78
effective length of database: 247,418
effective search space: 19298604
effective search space used: 19298604
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 34 (17.7 bits)