HHsearch alignment for GI: 254780621 and conserved domain: pfam08190
>pfam08190 PIH1 pre-RNA processing PIH1/Nop17. This domain is involved in pre-rRNA processing. It has has been shown to be required either for nucleolar retention or correct assembly of the box C/D snoRNP in Saccharomyces cerevisiae. The C-terminal region of this family has similarity to the CS domain pfam04969.
Probab=96.72 E-value=0.0076 Score=37.88 Aligned_cols=62 Identities=19% Similarity=0.289 Sum_probs=48.9
Q ss_pred CCEEEEEECCCCC-HHHEEEEEECCEEEEEEEECCCCCCCCCEEEEEEECCEEEEEEECCCCCEE--EEEEE--ECCEEE
Q ss_conf 9399999701177-021499996217999973033235566213455302304688973866158--10385--288599
Q gi|254780621|r 45 NAYRITIAVSGFH-PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEV--MSASL--ENGLLY 119 (157)
Q Consensus 45 ~~y~i~~~lPG~~-kedi~V~v~~~~LtI~g~~~~~~~~~~~~~~~e~~~~~F~R~f~Lp~~ve~--~~A~~--~nGiLt 119 (157)
T Consensus 258 ~~Lvv~I~LP~l~S~~~~~LdV~e~~l~L~~~~~-----------------~Y~Ldl~LPy~Vd~~~~~AkFdkk~~~L~ 320 (325)
T pfam08190 258 KELVLEIELPGLKSVAECDLDVSEDRLLLESRKP-----------------KYRLDLPLPYPVDEERGSAKFNKKKKTLT 320 (325)
T ss_pred CEEEEEEECCCCCCCCCEEEEECCCEEEEEECCC-----------------CCEEEECCCCEECCCCCEEEEECCCCEEE
T ss_conf 3899999888977512307997278899995698-----------------62688137864757875489832687899
Q ss_pred EEEE
Q ss_conf 9974
Q gi|254780621|r 120 LELL 123 (157)
Q Consensus 120 I~lp 123 (157)
T Consensus 321 VtlP 324 (325)
T pfam08190 321 VTLP 324 (325)
T ss_pred EEEC
T ss_conf 9803