RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780621|ref|YP_003065034.1| small heat shock protein
[Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
>gnl|CDD|107227 cd06470, ACD_IbpA-B_like, Alpha-crystallin domain (ACD) found in
Escherichia coli inclusion body-associated proteins IbpA
and IbpB, and similar proteins. IbpA and IbpB are 16
kDa small heat shock proteins (sHsps). sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. IbpA and IbpB are produced during high-level
production of various heterologous proteins,
specifically human prorenin, renin and bovine
insulin-like growth factor 2 (bIGF-2), and are strongly
associated with inclusion bodies containing these
heterologous proteins. IbpA and IbpB work as an
integrated system to stabilize thermally aggregated
proteins in a disaggregation competent state. The
chaperone activity of IbpB is also significantly
elevated as the temperature increases from normal to
heat shock. The high temperature results in the
disassociation of 2-3-MDa IbpB oligomers into smaller
approximately 600-kDa structures. This elevated activity
seen under heat shock conditions is retained for an
extended period of time after the temperature is
returned to normal. IbpA also forms multimers..
Length = 90
Score = 139 bits (353), Expect = 3e-34
Identities = 56/90 (62%), Positives = 69/90 (76%)
Query: 35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKR 94
PPY+IE+TGEN YRIT+AV+GF ++ IEV+++ L V G+K EE E EYLHRGIAKR
Sbjct: 1 PPYNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKR 60
Query: 95 AFERRFQLADFVEVMSASLENGLLYLELLR 124
AFER F LAD V+V A LENGLL ++L R
Sbjct: 61 AFERSFNLADHVKVKGAELENGLLTIDLER 90
>gnl|CDD|30420 COG0071, IbpA, Molecular chaperone (small heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 146
Score = 100 bits (249), Expect = 2e-22
Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 5/141 (3%)
Query: 1 MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSE 60
R D + + G+D + L S+ + PP DIE T + YRIT + G +
Sbjct: 8 NRFDFFPLLRDSPGFDRLFREFGNL-PESRPTGTPPVDIEETDDE-YRITAELPGVDKED 65
Query: 61 ITIEVDSSILMVRGEKKSEEK-ETVEYLHRGIAKRAFERRFQLADFV--EVMSASLENGL 117
I I V+ + L +RGE++ EE+ E YL R A FER F+L + V EV+ A +NGL
Sbjct: 66 IEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKYKNGL 125
Query: 118 LYLELLRSVPERMKPRRIEIS 138
L + L ++ PE KP+RIEI
Sbjct: 126 LTVTLPKAEPEEKKPKRIEIE 146
>gnl|CDD|107221 cd06464, ACD_sHsps-like, Alpha-crystallin domain (ACD) of
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps..
Length = 88
Score = 76.4 bits (189), Expect = 3e-15
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)
Query: 38 DIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFE 97
D+ T ++AY + + GF +I +EV+ +L + GE++ EE+E YL R + +F
Sbjct: 1 DVYET-DDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFS 59
Query: 98 RRFQLADFVEV--MSASLENGLLYLEL 122
R F+L + V+ + ASLENG+L + L
Sbjct: 60 RSFRLPEDVDPDKIKASLENGVLTITL 86
>gnl|CDD|109080 pfam00011, HSP20, Hsp20/alpha crystallin family.
Length = 102
Score = 74.9 bits (185), Expect = 9e-15
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 4/102 (3%)
Query: 40 ERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERR 99
+ ++A+ + + V GF P E+ ++V+ + ++V+G+ + EE+E L + +F R+
Sbjct: 2 IKEDKDAFVVKLDVPGFKPEELKVKVEDNRVLVKGKHE-EEEEDDHGLRSERSYGSFSRK 60
Query: 100 FQLADFVEVM--SASLENGLLYLELLRSVPE-RMKPRRIEIS 138
F L + + ASL++G+L + + + PE K RRI+I
Sbjct: 61 FTLPENADPDKVKASLKDGVLTVTVPKLEPEEPKKERRIQIQ 102
>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the
alpha-crystallin domain (ACD) of alpha-crystallin-type
small heat shock proteins (sHsps) and a similar domain
found in p23-like proteins. sHsps are small stress
induced proteins with monomeric masses between 12 -43
kDa, whose common feature is this ACD. sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps. p23 is a cochaperone of the Hsp90 chaperoning
pathway. It binds Hsp90 and participates in the folding
of a number of Hsp90 clients including the progesterone
receptor. p23 also has a passive chaperoning activity.
p23 in addition may act as the cytosolic prostaglandin
E2 synthase. Included in this family is the p23-like
C-terminal CHORD-SGT1 (CS) domain of suppressor of G2
allele of Skp1 (Sgt1) and the p23-like domains of human
butyrate-induced transcript 1 (hB-ind1), NUD (nuclear
distribution) C, Melusin, and NAD(P)H cytochrome b5
(NCB5) oxidoreductase (OR)..
Length = 80
Score = 58.0 bits (141), Expect = 1e-09
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 9/81 (11%)
Query: 44 ENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLA 103
++ +T+ + G +I +EV+ ++L + G+++ EE+ R + FER F+L
Sbjct: 5 DDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEE-------RERSYGEFERSFELP 57
Query: 104 DFVEV--MSASLENGLLYLEL 122
+ V+ ASLENG+L + L
Sbjct: 58 EDVDPEKSKASLENGVLEITL 78
>gnl|CDD|38798 KOG3591, KOG3591, KOG3591, Alpha crystallins [Posttranslational
modification, protein turnover, chaperones].
Length = 173
Score = 50.0 bits (119), Expect = 3e-07
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 28 PSQTSAYPPYDIE--RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE 85
P + ++ + + + V F P E+ ++ D + L V G K EEKE E
Sbjct: 53 PLSRARPLSSGASEIVNDKDKFEVNLDVHQFKPEELKVKTDDNTLEVEG--KHEEKED-E 109
Query: 86 YLHRGIAKRAFERRFQLADFVEV--MSASL-ENGLLYLELLRSVPERMKPRRIEISQSPQ 142
+ G R+F R++ L + V+ ++++L +G+L +E + P++ R I I Q
Sbjct: 110 H---GYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPPPKQDNERSIPIEQVGP 166
Query: 143 ESTKMIE 149
+
Sbjct: 167 SALSQKA 173
>gnl|CDD|107247 cd06526, metazoan_ACD, Alpha-crystallin domain (ACD) of metazoan
alpha-crystallin-type small(s) heat shock proteins
(Hsps). sHsps are small stress induced proteins with
monomeric masses between 12 -43 kDa, whose common
feature is the Alpha-crystallin domain (ACD). sHsps are
generally active as large oligomers consisting of
multiple subunits, and are believed to be
ATP-independent chaperones that prevent aggregation and
are important in refolding in combination with other
Hsps..
Length = 83
Score = 44.8 bits (107), Expect = 1e-05
Identities = 26/86 (30%), Positives = 48/86 (55%), Gaps = 9/86 (10%)
Query: 39 IERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFER 98
+ + +++T+ V GF P E+ ++V + L+V G+ EE+E G R F R
Sbjct: 1 VVNDDDEKFQVTLDVKGFKPEELKVKVSDNKLVVEGKH--EERED----EHGYVSREFTR 54
Query: 99 RFQLADFV--EVMSASL-ENGLLYLE 121
R+QL + V + +++SL +G+L +E
Sbjct: 55 RYQLPEGVDPDSVTSSLSSDGVLTIE 80
>gnl|CDD|107229 cd06472, ACD_ScHsp26_like, Alpha crystallin domain (ACD) found in
Saccharomyces cerevisiae (Sc) small heat shock protein
(Hsp)26 and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. ScHsp26 is
temperature-regulated, it switches from an inactive to a
chaperone-active form upon elevation in temperature. It
associates into large 24-mers storage forms which upon
heat shock disassociate into dimers. These dimers
initiate the interaction with non-native substrate
proteins and re-assemble into large globular assemblies
having one monomer of substrate bound per dimer. This
group also contains Arabidopsis thaliana (Ath) Hsp15.7,
a peroxisomal matrix protein which can complement the
morphological phenotype of S. cerevisiae mutants
deficient in Hsps26. AthHsp15.7 is minimally expressed
under normal conditions and is strongly induced by heat
and oxidative stress. Also belonging to this group is
wheat HSP16.9 which differs in quaternary structure from
the shell-type particles of ScHsp26, it assembles as a
dodecameric double disc, with each disc organized as a
trimer of dimers..
Length = 92
Score = 42.7 bits (101), Expect = 4e-05
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 45 NAYRITIAVSGFHPSEITIEV-DSSILMVRGEKKSEEKETVEYLHRGIAKRA-FERRFQL 102
A+ V G ++ +EV D +L + GE+K EE++ + HR F RRF+L
Sbjct: 9 EAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRL 68
Query: 103 ADFVEV--MSASLENGLL 118
+ + + A LENG+L
Sbjct: 69 PENADADEVKAFLENGVL 86
>gnl|CDD|35929 KOG0710, KOG0710, KOG0710, Molecular chaperone (small heat-shock
protein Hsp26/Hsp42) [Posttranslational modification,
protein turnover, chaperones].
Length = 196
Score = 41.3 bits (96), Expect = 1e-04
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 7/114 (6%)
Query: 31 TSAYPPYDIERTGENAYRITIAVSGFHPSEITIEV-DSSILMVRGEKKSEEKETVEYLHR 89
+ A P+D++ + +A+ + + G +I +EV D +L + GE+K EE+E+
Sbjct: 81 SEARVPWDVKES-PDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKW 139
Query: 90 GIAKRA---FERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIEIS 138
+R F+RRF+L + V+V + A +ENG+L + + + P KP+ +I+
Sbjct: 140 KRVERKLGKFKRRFELPENVDVDEIKAEMENGVLTVVVPKLEPLLKKPKVRQIA 193
>gnl|CDD|107232 cd06477, ACD_HspB3_Like, Alpha crystallin domain (ACD) found in
mammalian HspB3, also known as heat-shock protein
27-like protein (HSPL27, 17-kDa) and similar proteins.
sHsps are molecular chaperones that suppress protein
aggregation and protect against cell stress, and are
generally active as large oligomers consisting of
multiple subunits. HspB3 is expressed in adult skeletal
muscle, smooth muscle, and heart, and in several other
fetal tissues. In muscle cells HspB3 forms an
oligomeric 150 kDa complex with myotonic dystrophy
protein kinase-binding protein (MKBP/ HspB2), this
complex may comprise one of two independent muscle-cell
specific chaperone systems. The expression of HspB3 is
induced during muscle differentiation controlled by the
myogenic factor MyoD. HspB3 may also interact with Hsp22
(HspB8)..
Length = 83
Score = 38.6 bits (90), Expect = 8e-04
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 9/85 (10%)
Query: 40 ERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERR 99
+ G+ ++I + V F P +I I+V L+++G+ E G R+F R+
Sbjct: 2 QEEGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDE------HGFISRSFTRQ 55
Query: 100 FQLADFVEV--MSASL-ENGLLYLE 121
+QL D VE +SA L +G+L +E
Sbjct: 56 YQLPDGVEHKDLSAMLCHDGILVVE 80
>gnl|CDD|107228 cd06471, ACD_LpsHSP_like, Group of bacterial proteins containing an
alpha crystallin domain (ACD) similar to Lactobacillus
plantarum (Lp) small heat shock proteins (sHsp) HSP
18.5, HSP 18.55 and HSP 19.3. sHsps are molecular
chaperones that suppress protein aggregation and protect
against cell stress, and are generally active as large
oligomers consisting of multiple subunits. Transcription
of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is
regulated by a variety of stresses including heat, cold
and ethanol. Early growing L. plantarum cells contain
elevated levels of these mRNAs which rapidly fall of as
the cells enter stationary phase. Also belonging to this
group is Bifidobacterium breve (Bb) HSP20 and Oenococcus
oenis (syn. Leuconostoc oenos) (Oo) HSP18.
Transcription of the gene encoding BbHSP20 is strongly
induced following heat or osmotic shock, and that of the
gene encoding OoHSP18 following heat, ethanol or acid
shock. OoHSP18 is peripherally associated with the
cytoplasmic membrane..
Length = 93
Score = 38.2 bits (90), Expect = 0.001
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 38 DIERTGENAYRITIAVSGFHPSEITIEVDSSILMV---RGEKKSEEKETVEYLHRGIAKR 94
DI+ T ++ Y + + GF +I ++ L + R E K E+ + Y+ R
Sbjct: 4 DIKET-DDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYG 62
Query: 95 AFERRFQLADFVEV-MSASLENGLLYLEL 122
+F R F L + E + A ENG+L + L
Sbjct: 63 SFSRSFYLPNVDEEEIKAKYENGVLKITL 91
>gnl|CDD|107236 cd06481, ACD_HspB9_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB9 and
similar proteins. sHsps are molecular chaperones that
suppress protein aggregation and protect against cell
stress, and are generally active as large oligomers
consisting of multiple subunits. Human (h) HspB9 is
expressed exclusively in the normal testis and in
various tumor samples and is a cancer/testis antigen.
hHspB9 interacts with TCTEL1 (T-complex testis
expressed protein -1), a subunit of dynein. hHspB9 and
TCTEL1 are co-expressed in similar cells within the
testis and in tumor cells. Included in this group is
Xenopus Hsp30, a developmentally-regulated
heat-inducible molecular chaperone..
Length = 87
Score = 37.4 bits (87), Expect = 0.002
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 43 GENAYRITIAVSGFHPSEITIEVDSSILMVRG--EKKSE-EKETVEYLHRGIAKRAFERR 99
G+ + + + V GF P ++++ VD L+V G EKK+E EK + Y + + F R
Sbjct: 5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEY-----QEFVRE 59
Query: 100 FQLADFV--EVMSASL-ENGLLYLE 121
QL + V E ++ SL +G L++
Sbjct: 60 AQLPEHVDPEAVTCSLSPSGHLHIR 84
>gnl|CDD|107230 cd06475, ACD_HspB1_like, Alpha crystallin domain (ACD) found in
mammalian small (s)heat shock protein (Hsp)-27 (also
denoted HspB1 in human) and similar proteins. sHsps are
molecular chaperones that suppress protein aggregation
and protect against cell stress, and are generally
active as large oligomers consisting of multiple
subunits. Hsp27 shows enhanced synthesis in response to
stress. It is a molecular chaperone which interacts with
a large number of different proteins. It is found in
many types of human cells including breast, uterus,
cervix, platelets and cancer cells. Hsp27 has diverse
cellular functions including, chaperoning, regulation of
actin polymerization, keratinocyte differentiation,
regulation of inflammatory pathways in keratinocytes,
and protection from oxidative stress through modulating
glutathione levels. It is also a subunit of
AUF1-containing protein complexes. It has been linked to
several transduction pathways regulating cellular
functions including differentiation, cell growth,
development, and apoptosis. Its activity can be
regulated by phosphorylation. Its unphosphorylated state
is a high molecular weight aggregated form (100-800kDa)
composed of up to 24 subunits, which forms as a result
of multiple interactions within the ACD, and is required
for chaperone function and resistance to oxidative
stress. Upon phosphorylation these large aggregates
rapidly disassociate to smaller oligomers and chaperone
activity is modified. High constitutive levels of Hsp27
have been detected in various cancer cells, in
particular those of carcinoma origin. Over-expression of
Hsp27 has a protective effect against various
diseases-processes, including Huntington's disease.
Mutations in Hsp27 have been associated with a form of
distal hereditary motor neuropathy type II and
Charcot-Marie-Tooth disease type 2..
Length = 86
Score = 37.1 bits (86), Expect = 0.002
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 9/84 (10%)
Query: 41 RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
R + +++++ V+ F P E+ ++ ++ + G K EEK+ G R F R++
Sbjct: 6 RQTADRWKVSLDVNHFAPEELVVKTKDGVVEITG--KHEEKQD----EHGFVSRCFTRKY 59
Query: 101 QL---ADFVEVMSASLENGLLYLE 121
L D V S+ +G+L +E
Sbjct: 60 TLPPGVDPTAVTSSLSPDGILTVE 83
>gnl|CDD|30758 COG0409, HypD, Hydrogenase maturation factor [Posttranslational
modification, protein turnover, chaperones].
Length = 364
Score = 29.5 bits (66), Expect = 0.41
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)
Query: 22 LDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMV-RGEKK--S 78
+D AP S Y+ I V+GF P +I + V + + RGE K +
Sbjct: 187 IDAFLAPGHVSTIIGTKPYEFLAEKYKFPIVVAGFEPLDILLGVLMLLKQIIRGEAKVEN 246
Query: 79 EEKETVEYLHRGIAKRAFERRFQLADF 105
E K V+ A+ F++ D
Sbjct: 247 EYKRAVKDEGNVKAQELINEVFEVEDS 273
>gnl|CDD|145070 pfam01723, Chorion_1, Chorion protein. This family consists of the
chorion superfamily proteins classes A, B, CA, CB and
high-cysteine HCB from silk, gypsy and polyphemus moths.
The chorion proteins make up the moths egg shell a
complex extracellular structure.
Length = 176
Score = 29.5 bits (66), Expect = 0.42
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 24 GLGAPSQTSAYPPYDIERTGENAYRITIAVSG 55
G G +S+ P + EN Y +AV G
Sbjct: 69 GGGLAVVSSSAAPTGLGIASENRYEGNVAVCG 100
>gnl|CDD|107234 cd06479, ACD_HspB7_like, Alpha crystallin domain (ACD) found in
mammalian small heat shock protein (sHsp) HspB7, also
known as cardiovascular small heat shock protein
(cvHsp), and similar proteins. sHsps are molecular
chaperones that suppress protein aggregation and
protect against cell stress, and are generally active
as large oligomers consisting of multiple subunits.
HspB7 is a 25-kDa protein, preferentially expressed in
heart and skeletal muscle. It binds the cytoskeleton
protein alpha-filamin (also known as actin-binding
protein 280). The expression of HspB7 is increased
during rat muscle aging. Its expression is also
modulated in obesity implicating this protein in this
and related metabolic disorders. As the human gene
encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it
is a positional candidate for several dystrophies and
myopathies..
Length = 81
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 41 RTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEK 76
+T + Y+ + VS F P +I + ++ + V EK
Sbjct: 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEK 39
>gnl|CDD|33072 COG3261, HycE, Ni,Fe-hydrogenase III large subunit [Energy
production and conversion].
Length = 382
Score = 27.1 bits (60), Expect = 2.1
Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 44 ENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLA 103
I V HP IE L V GEK + + Y+HRGI K A + A
Sbjct: 4 GGEGEFEIPVGPVHP--GLIEPGHFRLFVDGEKIVDADIRLGYVHRGIEKIAEGLPYNKA 61
Query: 104 DFV 106
F+
Sbjct: 62 LFL 64
>gnl|CDD|39432 KOG4231, KOG4231, KOG4231, Intracellular membrane-bound
Ca2+-independent phospholipase A2 [Lipid transport and
metabolism].
Length = 763
Score = 26.6 bits (58), Expect = 3.4
Identities = 11/85 (12%), Positives = 22/85 (25%)
Query: 5 VSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
+ SA + V S L + Q + P + I + E I+
Sbjct: 657 LIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDRCMELDETDPEILLQLEAAIEEYIQ 716
Query: 65 VDSSILMVRGEKKSEEKETVEYLHR 89
+ E+ + +
Sbjct: 717 RNPQKFKNVAERLTLPFLNDQKWCD 741
>gnl|CDD|144313 pfam00667, FAD_binding_1, FAD binding domain. This domain is found
in sulfite reductase, NADPH cytochrome P450 reductase,
Nitric oxide synthase and methionine synthase reductase.
Length = 217
Score = 26.1 bits (58), Expect = 3.8
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 79 EEKETVEYLHRGIAKRAFER-RFQLAD-FVEVM----SASLENGLLYLELLRSVPERMKP 132
EEK+ +E L KR ++R + A +EV+ SA L L LELL R++P
Sbjct: 123 EEKQRLEALVSDAGKREYKRWKLNKARTLLEVLEEFPSAKLPAEFL-LELLP----RLQP 177
Query: 133 RRIEISQSP 141
R IS SP
Sbjct: 178 RYYSISSSP 186
>gnl|CDD|145215 pfam01924, HypD, Hydrogenase formation hypA family. HypD is
involved in hydrogenase formation. It contains many
possible metal binding residues, which may bind to
nickel. Transposon Tn5 insertions into hypD resulted in
R. leguminosarum mutants that lacked any hydrogenase
activity in symbiosis with peas.
Length = 355
Score = 25.5 bits (57), Expect = 6.6
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 21/96 (21%)
Query: 22 LDGLGAPSQTSA---YPPYD--IERTGENAYRITIAVSGFHPSEITIEVDSSILM----- 71
+DG P S PY+ E Y + + V+GF P +++ +ILM
Sbjct: 180 IDGFIGPGHVSTIIGTEPYEFLAEE-----YGVPVVVAGFEP----LDILQAILMLVRQL 230
Query: 72 VRGEKK--SEEKETVEYLHRGIAKRAFERRFQLADF 105
G + ++ V+ A+ F++ D
Sbjct: 231 NEGRAEVENQYTRAVKPEGNLKAQALIAEVFEVRDA 266
>gnl|CDD|34244 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal
domain [General function prediction only].
Length = 411
Score = 25.4 bits (55), Expect = 8.0
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 60 EITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF 100
VD+ L E+ ++ + E LH + E+R
Sbjct: 371 PKLKSVDNLALKKMLEEYVKDPLSHELLHTKYKVQIVEKRL 411
>gnl|CDD|143166 cd00098, IgC, Immunoglobulin Constant domain. IgC:
Immunoglobulin constant domain (IgC). Members of the
IgC family are components of immunoglobulin, T-cell
receptors, CD1 cell surface glycoproteins, secretory
glycoproteins A/C, and Major Histocompatibility Complex
(MHC) class I/II molecules. In immunoglobulins, each
chain is composed of one variable domain (IgV) and one
or more IgC domains. These names reflect the fact that
the variability in sequences is higher in the variable
domain than in the constant domain. The IgV domain is
responsible for antigen binding, and the IgC domain is
involved in oligomerization and molecular interactions.
Length = 95
Score = 25.1 bits (55), Expect = 9.2
Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90
PP E G + +T +GF+P +IT+ + G++ + T +
Sbjct: 2 FLLPPSPEELLGGSV-TLTCLATGFYPPDITVT-----WLKNGKELTSGVTTTPPVPNS 54
>gnl|CDD|30994 COG0649, NuoD, NADH:ubiquinone oxidoreductase 49 kD subunit 7
[Energy production and conversion].
Length = 398
Score = 25.1 bits (55), Expect = 9.6
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 37 YDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAF 96
+ ++R+ EN + + HPS T V IL + GE + + YLHRG+ K A
Sbjct: 3 WGMKRSEENTENMFLNFGPQHPS--THGVLRLILELDGEIVVDADPDIGYLHRGMEKLA- 59
Query: 97 ERRF 100
E R
Sbjct: 60 ENRT 63
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.314 0.131 0.348
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,751,147
Number of extensions: 84730
Number of successful extensions: 206
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 32
Length of query: 157
Length of database: 6,263,737
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,405,363
Effective search space: 312780773
Effective search space used: 312780773
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.3 bits)