RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780621|ref|YP_003065034.1| small heat shock protein
[Candidatus Liberibacter asiaticus str. psy62]
(157 letters)
>gnl|CDD|182691 PRK10743, PRK10743, heat shock protein IbpA; Provisional.
Length = 137
Score = 139 bits (351), Expect = 4e-34
Identities = 66/138 (47%), Positives = 93/138 (67%), Gaps = 3/138 (2%)
Query: 1 MR-LDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPS 59
MR D+S +Y SA+G+D + ++L+ YPPY++E EN YRI IAV+GF S
Sbjct: 1 MRNFDLSPLYRSAIGFDRLFNLLEN-NQSQSNGGYPPYNVELVDENHYRIAIAVAGFAES 59
Query: 60 EITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLY 119
E+ I ++L+V+G E+KE YL++GIA+R FER+FQLA+ + V A+L NGLLY
Sbjct: 60 ELEITAQDNLLVVKGAHADEQKER-TYLYQGIAERNFERKFQLAENIHVRGANLVNGLLY 118
Query: 120 LELLRSVPERMKPRRIEI 137
++L R +PE KPRRIEI
Sbjct: 119 IDLERVIPEAKKPRRIEI 136
>gnl|CDD|183223 PRK11597, PRK11597, heat shock chaperone IbpB; Provisional.
Length = 142
Score = 120 bits (303), Expect = 2e-28
Identities = 53/142 (37%), Positives = 92/142 (64%), Gaps = 5/142 (3%)
Query: 1 MR-LDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPS 59
MR D+S + +G+D + + L G ++PPY+IE++ +N YRIT+A++GF
Sbjct: 1 MRNYDLSPLLRQWIGFDKLANALQNAGESQ---SFPPYNIEKSDDNHYRITLALAGFRQE 57
Query: 60 EITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLY 119
++ I+++ + L V+G + EKE V++LH+G+ + F F LA+ +EV A+ NGLL+
Sbjct: 58 DLDIQLEGTRLTVKGTPEQPEKE-VKWLHQGLVNQPFSLSFTLAENMEVSGATFVNGLLH 116
Query: 120 LELLRSVPERMKPRRIEISQSP 141
++L+R+ PE + P+RI IS+ P
Sbjct: 117 IDLIRNEPEAIAPQRIAISERP 138
>gnl|CDD|148048 pfam06209, COBRA1, Cofactor of BRCA1 (COBRA1). This family
consists of several cofactor of BRCA1 (COBRA1) like
proteins. It is thought that COBRA1 along with BRCA1 is
involved in chromatin unfolding. COBRA1 is recruited to
the chromosome site by the first BRCT repeat of BRCA1,
and is itself sufficient to induce chromatin unfolding.
BRCA1 mutations that enhance chromatin unfolding also
increase its affinity for, and recruitment of, COBRA1.
It is thought that that reorganisation of higher levels
of chromatin structure is an important regulated step in
BRCA1-mediated nuclear functions.
Length = 475
Score = 34.0 bits (78), Expect = 0.018
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 16/88 (18%)
Query: 19 LSMLD-GLGA----PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVR 73
L ML G GA SQ P D E V+ F P+ +++ VD S +
Sbjct: 237 LRMLSLGQGAWDMIDSQVFKEPRLDDE-----------LVTKFLPALMSLMVDDSTFNLE 285
Query: 74 GEKKSEEKETVEYLHRGIAKRAFERRFQ 101
+ +EKE+V Y AF R Q
Sbjct: 286 QKLPEDEKESVLYSDPTTLPDAFTRFLQ 313
>gnl|CDD|180884 PRK07207, PRK07207, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 965
Score = 30.7 bits (70), Expect = 0.17
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 13/77 (16%)
Query: 27 APSQTSAYPPYD-IERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE---KE 82
A + Y I R G +V F PS+I + + + L V G + + +E
Sbjct: 24 AAAAPGQLADYKVIRRNG--------SVVPFEPSKIAVAMTKAFLAVEGGQAAASARVRE 75
Query: 83 TVEYLHRGIAKRAFERR 99
TVE L + RA RR
Sbjct: 76 TVEQLTEQVV-RALVRR 91
>gnl|CDD|183437 PRK12322, PRK12322, NADH dehydrogenase subunit D; Provisional.
Length = 366
Score = 28.9 bits (65), Expect = 0.52
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 57 HPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRF-QLADFVEVMS--ASL 113
HPS T V +L + GE E + YLHRG K A ++ Q+ + + M +++
Sbjct: 15 HPS--THGVFRLVLKIDGEIIVEATPVIGYLHRGTEKLAESLQYTQIIPYTDRMDYLSAM 72
Query: 114 ENGLLYLELLRS-----VPERMKPRRI 135
N +Y + + VPER + R+
Sbjct: 73 TNNYVYCHAVETMMGLEVPERAEYLRV 99
>gnl|CDD|148968 pfam07654, C1-set, Immunoglobulin C1-set domain.
Length = 83
Score = 28.8 bits (65), Expect = 0.58
Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 53 VSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90
V+GF+P +IT+ + G++ +E E+ E L G
Sbjct: 17 VTGFYPPDITVT-----WLKNGQEVTEGVESTEELPNG 49
>gnl|CDD|149449 pfam08389, Xpo1, Exportin 1-like protein. The sequences featured
in this family are similar to a region close to the
N-terminus of yeast exportin 1 (Xpo1, Crm1). This region
is found just C-terminal to an importin-beta N-terminal
domain (pfam03810) in many members of this family.
Exportin 1 is a nuclear export receptor that interacts
with leucine-rich nuclear export signal (NES) sequences,
and Ran-GTP, and is involved in translocation of
proteins out of the nucleus.
Length = 147
Score = 28.3 bits (64), Expect = 0.96
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
Query: 102 LADFVEVMSASLENGLLYLELLRSVPERMKPRRIEISQSPQESTKMIEEKKKSV 155
D V ++S+S L L +L+ +PE EI + T + ++++ +
Sbjct: 28 FPDLVSLLSSSPSGCELLLRILKVLPE-------EIFDFSR--TPLTQQRRNRL 72
>gnl|CDD|128685 smart00407, IGc1, Immunoglobulin C-Type.
Length = 75
Score = 27.3 bits (61), Expect = 1.6
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
Query: 53 VSGFHPSEITIEVDSSILMVRGEKKSEEKETVE 85
VSGF+P +IT+ + G++ + T +
Sbjct: 8 VSGFYPPDITVT-----WLRNGQEVTSGVSTTD 35
>gnl|CDD|179089 PRK00698, tmk, thymidylate kinase; Validated.
Length = 205
Score = 26.7 bits (60), Expect = 2.4
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 34/106 (32%)
Query: 51 IAVSGFHPSEITI--EVDSSILMVR----GEKKSEEKETVEYLHRGIAKRAFERRFQLAD 104
A+ GF P ++T+ +V + + R GE E+E +++ R
Sbjct: 121 FALGGFRP-DLTLYLDVPPEVGLARIRARGELDRIEQEGLDFFERVREG----------- 168
Query: 105 FVEVMSASLENGLLYLELLRSVPERMKPRRIEISQSPQESTKMIEE 150
YLEL PER+ I+ SQS +E + I
Sbjct: 169 --------------YLELAEKEPERIV--VIDASQSLEEVHEDILA 198
>gnl|CDD|184639 PRK14346, PRK14346, lipoate-protein ligase B; Provisional.
Length = 230
Score = 26.6 bits (59), Expect = 2.6
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 28 PSQTSAYPPYDIERTG----ENAYRITIAV 53
P Q AYP D+ R G E YRI AV
Sbjct: 77 PGQVVAYPLIDLRRAGYFVKEYVYRIEEAV 106
>gnl|CDD|178037 PLN02416, PLN02416, probable pectinesterase/pectinesterase
inhibitor.
Length = 541
Score = 26.8 bits (59), Expect = 2.6
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 83 TVEYLHRGIAK-RAFERRFQLADFVEVMSASLENGLLYLELLRSVPERMKPR 133
TV L R +++ +A + R +LAD +SA+L N LE L S +KP+
Sbjct: 119 TVSSLKRSVSRIQAGDSR-KLADARAYLSAALTNKNTCLEGLDSASGPLKPK 169
>gnl|CDD|181617 PRK09034, PRK09034, aspartate kinase; Reviewed.
Length = 454
Score = 26.3 bits (59), Expect = 3.3
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 57 HPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAF 96
+P E+ IE D +I+MV GE + G+A +
Sbjct: 375 NPDELEIEHDLAIIMVVGEGMRQ--------TVGVAAKIT 406
>gnl|CDD|183856 PRK13055, PRK13055, putative lipid kinase; Reviewed.
Length = 334
Score = 25.0 bits (55), Expect = 8.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 38 DIERTGENAYRITIAVSGFHPSEITIEVDSSI 69
DI R E+ Y I IA G +E+T V S +
Sbjct: 126 DIGRANEDKYFINIAAGG-SLTELTYSVPSQL 156
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.314 0.131 0.348
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 2,484,418
Number of extensions: 151148
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 25
Length of query: 157
Length of database: 5,994,473
Length adjustment: 86
Effective length of query: 71
Effective length of database: 4,136,185
Effective search space: 293669135
Effective search space used: 293669135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.1 bits)