RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780621|ref|YP_003065034.1| small heat shock protein [Candidatus Liberibacter asiaticus str. psy62] (157 letters) >1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} (A:37-151) Length = 115 Score = 80.1 bits (197), Expect = 1e-16 Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 5/114 (4%) Query: 29 SQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE--Y 86 + A D + T A+ + G E+ +EV+ ++V ++++EKE + Sbjct: 2 TAAFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKW 60 Query: 87 LHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIEIS 138 + F RRF+L + +V + A LENG+L + + ++ ++ + + I+IS Sbjct: 61 HRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 114 >3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} (A:) Length = 100 Score = 76.5 bits (188), Expect = 2e-15 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 4/99 (4%) Query: 32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE-YLHRG 90 P DI+ N + + + G PS+I +++D IL +RGE+KSE E + Sbjct: 2 QWVPRVDIKEE-VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIE 60 Query: 91 IAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVP 127 +F RRF L D + ++A+ NG+L + + + Sbjct: 61 RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99 >2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus} (A:) Length = 101 Score = 74.6 bits (183), Expect = 6e-15 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 10/106 (9%) Query: 35 PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKR 94 + + + + V F P EI+++V + V + G R Sbjct: 2 AMAQVPTD-PGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEER------PDEHGFIAR 54 Query: 95 AFERRFQLADFVE---VMSASLENGLLYLELLRSVPERMKPRRIEI 137 F RR++L V+ V SA G+L ++ + + P Sbjct: 55 EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100 >1shs_A Small heat shock protein; chaperone, beta-sandwich, structural genomics, PSI, protein structure initiative; 2.90A {Methanocaldococcus jannaschii} (A:) Length = 147 Score = 74.5 bits (182), Expect = 7e-15 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 7/121 (5%) Query: 21 MLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE 80 + G + P I + ++ + G + +I + L +R ++ Sbjct: 29 IQSSTGIQISGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLM 87 Query: 81 KETVE--YLHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIE 136 E + R +L V+ SA ENG+L + L + E + I Sbjct: 88 ITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK--AESSIKKGIN 145 Query: 137 I 137 I Sbjct: 146 I 146 >2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata} (A:95-190) Length = 96 Score = 68.7 bits (168), Expect = 3e-13 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 10/99 (10%) Query: 32 SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGI 91 Y++ + G +++ V F EITI+ D + L+VR +K Sbjct: 5 FLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKS-------VACGDAA 57 Query: 92 AKRAFERRFQLADFVEVMSAS---LENGLLYLELLRSVP 127 + R L V+ + +L +E + P Sbjct: 58 MSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEP 96 >3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta fold and the C-terminal all beta domain., structural genomics, PSI-2; 2.00A {Nostoc SP} (A:298-374) Length = 77 Score = 41.6 bits (98), Expect = 6e-05 Identities = 9/89 (10%), Positives = 22/89 (24%), Gaps = 22/89 (24%) Query: 44 ENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLA 103 + ++ + + GF ++ + + V R L Sbjct: 7 THNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGD-------------------QRRNIFLP 47 Query: 104 DFV---EVMSASLENGLLYLELLRSVPER 129 + + A +N L + L Sbjct: 48 PALSGRPITGAKFQNNYLIISFLEHHHHH 76 >3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport, respiratory chain, 4Fe- 4S, cell membrane, flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* (4:1-75) Length = 75 Score = 32.5 bits (74), Expect = 0.026 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%) Query: 23 DGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKE 82 + L + RT +T+ V HPS T V ++ + GE+ E Sbjct: 4 EFLEEIPLDAPPEEAKELRTEV----MTLNVGPQHPS--THGVLRLMVTLSGEEVLEVVP 57 Query: 83 TVEYLHRGIAKRAFERR 99 + YLH G K E R Sbjct: 58 HIGYLHTGFEKTM-EHR 73 >2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:22-65) Length = 44 Score = 30.3 bits (69), Expect = 0.11 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%) Query: 58 PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQL 102 P E+ ++V ++ V G K EE++ G R F R++++ Sbjct: 2 PEELKVKVLGDVIEVHG--KHEERQD----EHGFISREFHRKYRI 40 >2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, membrane, receptor, polymorphism, molecular mimicry, multiple sclerosis; HET: NAG BMA MAN; 3.00A {Homo sapiens} (D:146-279) Length = 134 Score = 29.2 bits (65), Expect = 0.27 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 6/88 (6%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87 P + + + P + E + + +GF+P + + V G++ T Sbjct: 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS-----WWVNGKEVHSGVSTDPQP 58 Query: 88 HRGIAKRAFERRFQLADFVEVMSASLEN 115 + + R+ L+ + V + +N Sbjct: 59 LKEQPALN-DSRYSLSSRLRVSATFWQN 85 >1pkq_B (8-18C5) chimeric FAB, heavy chain; autoantibody, multiple sclerosis, EAE, immune system; 3.00A {Mus musculus} (B:142-252) Length = 111 Score = 28.8 bits (64), Expect = 0.33 Identities = 7/63 (11%), Positives = 12/63 (19%), Gaps = 6/63 (9%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87 P +G A + V + P +T+ Sbjct: 3 GPSVFPLAPSSKSTSGGTA-ALGCLVKDYFPEPVTVS-----WNSGALTSGVHTFPAVLQ 56 Query: 88 HRG 90 G Sbjct: 57 SSG 59 >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} (A:117-238) Length = 122 Score = 27.6 bits (61), Expect = 0.72 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 4/63 (6%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87 P + S + P E + + GF P + + S + E S + Sbjct: 4 PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVEL----SWWVNGKEVHSGVSTDPQAY 59 Query: 88 HRG 90 Sbjct: 60 KES 62 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 27.5 bits (61), Expect = 0.77 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%) Query: 98 RRFQLADFVEVMSASLENGLLYLEL-LRSVPERMKPRRIEISQSPQESTKMIEEKKKS 154 R+ QL + +EN L L+L +P + ++ E T+ I + +S Sbjct: 29 RKRQLVTREAQIKDWVENELEALKLEAEEIPSE------DQNEFLLERTREIHNEAES 80 >1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex, histocompatibility antigen I-AK; HET: NAG; 1.90A {Mus musculus} (A:87-199) Length = 113 Score = 26.9 bits (59), Expect = 1.2 Identities = 7/63 (11%), Positives = 16/63 (25%), Gaps = 7/63 (11%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87 Q + +P + N + V P I I + + ++ + Sbjct: 4 APQATVFPKSPVLLGQPN--TLICFVDNIFPPVINIT-----WLRNSKSVTDGVYETSFF 56 Query: 88 HRG 90 Sbjct: 57 VNR 59 >1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility complex, MHC, vomeronasal organ, VNO, V2R receptors, pheromone receptors, peptides, immune system; HET: NAG; 3.00A {Mus musculus} (A:179-274) Length = 96 Score = 26.9 bits (59), Expect = 1.3 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%) Query: 53 VSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90 GF+P++IT+ G+ +++ E + G Sbjct: 26 ALGFYPADITLT-----WKRDGKNHTQDMELPDTRPAG 58 >1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} (B:127-242) Length = 116 Score = 27.1 bits (59), Expect = 1.3 Identities = 7/54 (12%), Positives = 14/54 (25%) Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE 80 + + + P E + A + F P I I + + Sbjct: 4 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGN 57 >3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 3fn0_H 7fab_H 1ibg_H* 2hwz_H 3iy6_B (H:125-263) Length = 139 Score = 26.7 bits (58), Expect = 1.7 Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63 P T A + V + P +T+ Sbjct: 3 GPSVFPLAPSSKGSTSGTA-ALGCLVKDYFPEPVTV 37 >2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B* (B:95-211) Length = 117 Score = 26.5 bits (58), Expect = 1.7 Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 7/61 (11%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87 P + V GF+P+E+TI G+ + Sbjct: 2 PPSVQVAKTTPFNTREPV--MLACYVWGFYPAEVTIT-----WRKNGKLVMPHSSAHKTA 54 Query: 88 H 88 Sbjct: 55 Q 55 >2esv_E KK50.4 T cell receptor beta chain; TCR, HLA-E, CMV, PMHC/TCR complex, immune system; 2.60A {Homo sapiens} (E:115-240) Length = 126 Score = 26.2 bits (57), Expect = 2.2 Identities = 6/36 (16%), Positives = 16/36 (44%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63 P + + + P + E + + +GF+P + + Sbjct: 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 39 >2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate pathway, EPSP synthase, structural genomics; HET: S3P; 1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A* 2o0x_A* 2o0z_A* 2o15_A 2bjb_A (A:21-240) Length = 220 Score = 26.0 bits (56), Expect = 2.8 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 12/51 (23%) Query: 16 DTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVD 66 +ML G DI+ + N + IE D Sbjct: 181 AMTAAMLRQAGV----------DIDDSTPNR--WQVRPGPVAARRWDIEPD 219 >1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} (B:92-198) Length = 107 Score = 25.5 bits (55), Expect = 3.4 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%) Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63 + P N + +V+ F+P +I + Sbjct: 2 VEPTVTISPSRTEALNHHN--LLVCSVTDFYPGQIKV 36 >1l6x_A Immunoglobulin gamma-1 heavy chain constant region; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} (A:1-104) Length = 104 Score = 25.6 bits (56), Expect = 3.6 Identities = 2/38 (5%), Positives = 7/38 (18%), Gaps = 4/38 (10%) Query: 53 VSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90 V + + + +T + Sbjct: 27 VVDVSHEDPEV----KFNWYVDGVEVHNAKTKPREEQY 60 >3hg1_E T-cell receptor, beta chain; CDR3, phage display, melan-1, MART-1, immune system, disulfide bond, transmembrane, disease mutation, glycation; 3.00A {Homo sapiens} (E:119-244) Length = 126 Score = 25.4 bits (55), Expect = 3.8 Identities = 6/36 (16%), Positives = 16/36 (44%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63 P + + + P + E + + +GF+P + + Sbjct: 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 39 >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} (B:194-274) Length = 81 Score = 25.1 bits (55), Expect = 4.2 Identities = 6/33 (18%), Positives = 12/33 (36%) Query: 37 YDIERTGENAYRITIAVSGFHPSEITIEVDSSI 69 + + Y + I G S+ + D S+ Sbjct: 42 FKFDALDNGEYTVEIDADGKSYSDTVVIDDKSV 74 >1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} (B:124-223) Length = 100 Score = 25.4 bits (55), Expect = 4.3 Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 1/37 (2%) Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63 + + + F P IT Sbjct: 2 SAPTLFPLVSCENSNPSSTV-AVGCLAQDFLPDSITF 37 >1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} (E:119-252) Length = 134 Score = 25.0 bits (54), Expect = 4.5 Identities = 6/37 (16%), Positives = 16/37 (43%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64 P + + + P + E + + +GF+P + + Sbjct: 4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 40 >3liu_A Putative cell adhesion protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 2.05A {Parabacteroides distasonis} (A:175-208,A:266-402) Length = 171 Score = 25.1 bits (54), Expect = 4.6 Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 4/64 (6%) Query: 9 YNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSS 68 Y + + T + ++R Y I++ + G S+ Sbjct: 95 ITKENCYYAIP--VGEEVTIDGTEKRSKFYVQRN--YKYEISLTIIGPGSEIPYDPXIST 150 Query: 69 ILMV 72 + Sbjct: 151 NVSA 154 >1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} (H:118-227) Length = 110 Score = 25.3 bits (55), Expect = 4.7 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%) Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64 P + +G + + V G+ P +T+ Sbjct: 4 APSVYPLAPVCGDTSGSSV-TLGCLVKGYFPEPVTLT 39 >1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} (A:) Length = 134 Score = 25.0 bits (54), Expect = 5.5 Identities = 4/74 (5%), Positives = 17/74 (22%) Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEY 86 A+ D G ++ + + V + + + + + Sbjct: 12 ESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHP 71 Query: 87 LHRGIAKRAFERRF 100 ++ + Sbjct: 72 GCGPHTTFRWQVKL 85 >2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE] hydrogenase maturation, [4Fe-4S] cluster, thiol redox; HET: CSW; 2.07A {Thermococcus kodakarensis KOD1} (A:1-68,A:193-260,A:347-372) Length = 162 Score = 24.7 bits (54), Expect = 6.6 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%) Query: 22 LDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMV 72 GL AP S Y I V+GF P+++ +ILM+ Sbjct: 70 FQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVL----MAILML 116 >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} (A:) Length = 282 Score = 24.0 bits (51), Expect = 9.2 Identities = 9/49 (18%), Positives = 16/49 (32%) Query: 91 IAKRAFERRFQLADFVEVMSASLENGLLYLELLRSVPERMKPRRIEISQ 139 + R +A VE + + LYL+L+ V + Sbjct: 10 HSSGLVPRGSHMAPIVETAKETNSDSSLYLDLMIKVLAGTVYEDPAHRE 58 >1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} (A:1-50,A:262-371) Length = 160 Score = 23.9 bits (52), Expect = 9.8 Identities = 5/36 (13%), Positives = 10/36 (27%) Query: 14 GYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRI 49 S+L+ + +E T N + Sbjct: 119 NIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHL 154 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.131 0.348 Gapped Lambda K H 0.267 0.0525 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 1,110,419 Number of extensions: 47385 Number of successful extensions: 140 Number of sequences better than 10.0: 1 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 39 Length of query: 157 Length of database: 4,956,049 Length adjustment: 81 Effective length of query: 76 Effective length of database: 2,217,844 Effective search space: 168556144 Effective search space used: 168556144 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 51 (23.9 bits)