RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780621|ref|YP_003065034.1| small heat shock protein
[Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)



>1gme_A Heat shock protein 16.9B; small heat shock protein,
           chaperone, alpha-crystallin; 2.70A {Triticum aestivum}
           (A:37-151)
          Length = 115

 Score = 80.1 bits (197), Expect = 1e-16
 Identities = 27/114 (23%), Positives = 56/114 (49%), Gaps = 5/114 (4%)

Query: 29  SQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE--Y 86
           +   A    D + T   A+     + G    E+ +EV+   ++V   ++++EKE     +
Sbjct: 2   TAAFANARMDWKET-PEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKW 60

Query: 87  LHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIEIS 138
                +   F RRF+L +  +V  + A LENG+L + + ++  ++ + + I+IS
Sbjct: 61  HRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVLTVTVPKAEVKKPEVKAIQIS 114


>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP,
           high resolution, stress response, chaperone; 1.64A
           {Xanthomonas axonopodis PV} (A:)
          Length = 100

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 4/99 (4%)

Query: 32  SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVE-YLHRG 90
              P  DI+    N + +   + G  PS+I +++D  IL +RGE+KSE     E +    
Sbjct: 2   QWVPRVDIKEE-VNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIE 60

Query: 91  IAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVP 127
               +F RRF L D  +   ++A+  NG+L + + +   
Sbjct: 61  RRYGSFHRRFALPDSADADGITAAGRNGVLEIRIPKRPA 99


>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress
           response; 1.12A {Rattus norvegicus} (A:)
          Length = 101

 Score = 74.6 bits (183), Expect = 6e-15
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 10/106 (9%)

Query: 35  PPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKR 94
               +       + + + V  F P EI+++V    + V    +            G   R
Sbjct: 2   AMAQVPTD-PGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEER------PDEHGFIAR 54

Query: 95  AFERRFQLADFVE---VMSASLENGLLYLELLRSVPERMKPRRIEI 137
            F RR++L   V+   V SA    G+L ++   +  +   P     
Sbjct: 55  EFHRRYRLPPGVDPAAVTSALSPEGVLSIQATPASAQASLPSPPAA 100


>1shs_A Small heat shock protein; chaperone, beta-sandwich,
           structural genomics, PSI, protein structure initiative;
           2.90A {Methanocaldococcus jannaschii} (A:)
          Length = 147

 Score = 74.5 bits (182), Expect = 7e-15
 Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 7/121 (5%)

Query: 21  MLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE 80
           +    G       + P  I    +   ++   + G +  +I +      L +R ++    
Sbjct: 29  IQSSTGIQISGKGFMPISIIEG-DQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLM 87

Query: 81  KETVE--YLHRGIAKRAFERRFQLADFVEV--MSASLENGLLYLELLRSVPERMKPRRIE 136
               E         +    R  +L   V+    SA  ENG+L + L +   E    + I 
Sbjct: 88  ITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKFENGVLSVILPK--AESSIKKGIN 145

Query: 137 I 137
           I
Sbjct: 146 I 146


>2bol_A TSP36, small heat shock protein; A-crystallin, molecular
           chaperone; 2.5A {Taenia saginata} (A:95-190)
          Length = 96

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 19/99 (19%), Positives = 35/99 (35%), Gaps = 10/99 (10%)

Query: 32  SAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGI 91
                Y++ + G   +++   V  F   EITI+ D + L+VR +K               
Sbjct: 5   FLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKS-------VACGDAA 57

Query: 92  AKRAFERRFQLADFVEVMSAS---LENGLLYLELLRSVP 127
              +  R   L   V+          + +L +E   + P
Sbjct: 58  MSESVGRSIPLPPSVDRNHIQATITTDDVLVIEAPVNEP 96


>3igf_A ALL4481 protein; two-domained protein consisting of the
           N-terminal alpha-beta fold and the C-terminal all beta
           domain., structural genomics, PSI-2; 2.00A {Nostoc SP}
           (A:298-374)
          Length = 77

 Score = 41.6 bits (98), Expect = 6e-05
 Identities = 9/89 (10%), Positives = 22/89 (24%), Gaps = 22/89 (24%)

Query: 44  ENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLA 103
            +  ++ + + GF   ++ +      + V                         R   L 
Sbjct: 7   THNRQVRLFLPGFDKKQVKLTQYGPEVTVEAGD-------------------QRRNIFLP 47

Query: 104 DFV---EVMSASLENGLLYLELLRSVPER 129
             +    +  A  +N  L +  L      
Sbjct: 48  PALSGRPITGAKFQNNYLIISFLEHHHHH 76


>3i9v_4 NADH-quinone oxidoreductase subunit 4; electron transport,
          respiratory chain, 4Fe- 4S, cell membrane,
          flavoprotein, FMN, iron; HET: FMN; 3.10A {Thermus
          thermophilus HB8} PDB: 2fug_4* 3iam_4* 3ias_4* (4:1-75)
          Length = 75

 Score = 32.5 bits (74), Expect = 0.026
 Identities = 20/77 (25%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 23 DGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKE 82
          + L      +        RT      +T+ V   HPS  T  V   ++ + GE+  E   
Sbjct: 4  EFLEEIPLDAPPEEAKELRTEV----MTLNVGPQHPS--THGVLRLMVTLSGEEVLEVVP 57

Query: 83 TVEYLHRGIAKRAFERR 99
           + YLH G  K   E R
Sbjct: 58 HIGYLHTGFEKTM-EHR 73


>2wj7_A Alpha-crystallin B chain; desmin-related myopathy,
           phosphoprotein, disease mutation, eye lens protein,
           methylation, polymorphism, glycoprotein; 2.63A {Homo
           sapiens} (A:22-65)
          Length = 44

 Score = 30.3 bits (69), Expect = 0.11
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 6/45 (13%)

Query: 58  PSEITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQL 102
           P E+ ++V   ++ V G  K EE++       G   R F R++++
Sbjct: 2   PEELKVKVLGDVIEVHG--KHEERQD----EHGFISREFHRKYRI 40


>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC
           II, membrane, receptor, polymorphism, molecular mimicry,
           multiple sclerosis; HET: NAG BMA MAN; 3.00A {Homo
           sapiens} (D:146-279)
          Length = 134

 Score = 29.2 bits (65), Expect = 0.27
 Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 6/88 (6%)

Query: 28  PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87
           P + + + P + E +      +    +GF+P  + +        V G++      T    
Sbjct: 4   PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS-----WWVNGKEVHSGVSTDPQP 58

Query: 88  HRGIAKRAFERRFQLADFVEVMSASLEN 115
            +       + R+ L+  + V +   +N
Sbjct: 59  LKEQPALN-DSRYSLSSRLRVSATFWQN 85


>1pkq_B (8-18C5) chimeric FAB, heavy chain; autoantibody, multiple
          sclerosis, EAE, immune system; 3.00A {Mus musculus}
          (B:142-252)
          Length = 111

 Score = 28.8 bits (64), Expect = 0.33
 Identities = 7/63 (11%), Positives = 12/63 (19%), Gaps = 6/63 (9%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87
                  P     +G  A  +   V  + P  +T+                        
Sbjct: 3  GPSVFPLAPSSKSTSGGTA-ALGCLVKDYFPEPVTVS-----WNSGALTSGVHTFPAVLQ 56

Query: 88 HRG 90
            G
Sbjct: 57 SSG 59


>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A
          {Mus musculus} (A:117-238)
          Length = 122

 Score = 27.6 bits (61), Expect = 0.72
 Identities = 10/63 (15%), Positives = 18/63 (28%), Gaps = 4/63 (6%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87
          P + S + P   E   +    +     GF P  + +    S  +   E  S      +  
Sbjct: 4  PPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVEL----SWWVNGKEVHSGVSTDPQAY 59

Query: 88 HRG 90
             
Sbjct: 60 KES 62


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.5 bits (61), Expect = 0.77
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)

Query: 98  RRFQLADFVEVMSASLENGLLYLEL-LRSVPERMKPRRIEISQSPQESTKMIEEKKKS 154
           R+ QL      +   +EN L  L+L    +P        + ++   E T+ I  + +S
Sbjct: 29  RKRQLVTREAQIKDWVENELEALKLEAEEIPSE------DQNEFLLERTREIHNEAES 80


>1iak_A MHC class II I-AK; histocompatibility antigen, peptide
          complex, histocompatibility antigen I-AK; HET: NAG;
          1.90A {Mus musculus} (A:87-199)
          Length = 113

 Score = 26.9 bits (59), Expect = 1.2
 Identities = 7/63 (11%), Positives = 16/63 (25%), Gaps = 7/63 (11%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87
            Q + +P   +     N   +   V    P  I I       +   +  ++      + 
Sbjct: 4  APQATVFPKSPVLLGQPN--TLICFVDNIFPPVINIT-----WLRNSKSVTDGVYETSFF 56

Query: 88 HRG 90
             
Sbjct: 57 VNR 59


>1zs8_A Histocompatibility 2, M region locus 10.5; major
          histocompatibility complex, MHC, vomeronasal organ,
          VNO, V2R receptors, pheromone receptors, peptides,
          immune system; HET: NAG; 3.00A {Mus musculus}
          (A:179-274)
          Length = 96

 Score = 26.9 bits (59), Expect = 1.3
 Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 5/38 (13%)

Query: 53 VSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90
            GF+P++IT+          G+  +++ E  +    G
Sbjct: 26 ALGFYPADITLT-----WKRDGKNHTQDMELPDTRPAG 58


>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune
          system; 3.12A {Homo sapiens} (B:127-242)
          Length = 116

 Score = 27.1 bits (59), Expect = 1.3
 Identities = 7/54 (12%), Positives = 14/54 (25%)

Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEE 80
             + + + P   E   + A      +  F P  I I  +          +   
Sbjct: 4  VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGN 57


>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype,
          immune system; 1.75A {Mus musculus} PDB: 3fn0_H 7fab_H
          1ibg_H* 2hwz_H 3iy6_B (H:125-263)
          Length = 139

 Score = 26.7 bits (58), Expect = 1.7
 Identities = 6/36 (16%), Positives = 10/36 (27%), Gaps = 1/36 (2%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63
                  P     T   A  +   V  + P  +T+
Sbjct: 3  GPSVFPLAPSSKGSTSGTA-ALGCLVKDYFPEPVTV 37


>2bc4_B HLA class II histocompatibility antigen, DM beta chain;
          MHC class II, immune system; HET: NDG BMA; 2.27A {Homo
          sapiens} PDB: 1hdm_B 1k8i_B* (B:95-211)
          Length = 117

 Score = 26.5 bits (58), Expect = 1.7
 Identities = 9/61 (14%), Positives = 15/61 (24%), Gaps = 7/61 (11%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYL 87
          P                    +   V GF+P+E+TI          G+         +  
Sbjct: 2  PPSVQVAKTTPFNTREPV--MLACYVWGFYPAEVTIT-----WRKNGKLVMPHSSAHKTA 54

Query: 88 H 88
           
Sbjct: 55 Q 55


>2esv_E KK50.4 T cell receptor beta chain; TCR, HLA-E, CMV,
          PMHC/TCR complex, immune system; 2.60A {Homo sapiens}
          (E:115-240)
          Length = 126

 Score = 26.2 bits (57), Expect = 2.2
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63
          P + + + P + E +      +    +GF+P  + +
Sbjct: 4  PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 39


>2o0b_A 3-phosphoshikimate 1-carboxyvinyltransferase; shikimate
           pathway, EPSP synthase, structural genomics; HET: S3P;
           1.15A {Mycobacterium tuberculosis} PDB: 2o0d_A* 2o0e_A*
           2o0x_A* 2o0z_A* 2o15_A 2bjb_A (A:21-240)
          Length = 220

 Score = 26.0 bits (56), Expect = 2.8
 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 12/51 (23%)

Query: 16  DTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVD 66
               +ML   G           DI+ +  N     +           IE D
Sbjct: 181 AMTAAMLRQAGV----------DIDDSTPNR--WQVRPGPVAARRWDIEPD 219


>1uvq_B HLA class II histocompatibility antigen; immunology, MHC
          class II, diabetes, narcolepsy, autoimmune disease,
          structural proteomics in europe, spine, structural
          genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens}
          (B:92-198)
          Length = 107

 Score = 25.5 bits (55), Expect = 3.4
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63
               +  P         N   +  +V+ F+P +I +
Sbjct: 2  VEPTVTISPSRTEALNHHN--LLVCSVTDFYPGQIKV 36


>1l6x_A Immunoglobulin gamma-1 heavy chain constant region; IGG1
          FC, FC complex, immune system; HET: NAG BMA MAN GAL
          FUL; 1.65A {Homo sapiens} (A:1-104)
          Length = 104

 Score = 25.6 bits (56), Expect = 3.6
 Identities = 2/38 (5%), Positives = 7/38 (18%), Gaps = 4/38 (10%)

Query: 53 VSGFHPSEITIEVDSSILMVRGEKKSEEKETVEYLHRG 90
          V      +  +             +    +T     + 
Sbjct: 27 VVDVSHEDPEV----KFNWYVDGVEVHNAKTKPREEQY 60


>3hg1_E T-cell receptor, beta chain; CDR3, phage display, melan-1,
          MART-1, immune system, disulfide bond, transmembrane,
          disease mutation, glycation; 3.00A {Homo sapiens}
          (E:119-244)
          Length = 126

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63
          P + + + P + E +      +    +GF+P  + +
Sbjct: 4  PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL 39


>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum
          binding enzyme, MGD-cofactors, DMSO-reductase family,
          4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter
          acidigallici} (B:194-274)
          Length = 81

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 37 YDIERTGENAYRITIAVSGFHPSEITIEVDSSI 69
          +  +      Y + I   G   S+  +  D S+
Sbjct: 42 FKFDALDNGEYTVEIDADGKSYSDTVVIDDKSV 74


>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding
          outside the antigen combining site superantigen FAB VH3
          specificity; 2.70A {Homo sapiens} (B:124-223)
          Length = 100

 Score = 25.4 bits (55), Expect = 4.3
 Identities = 4/37 (10%), Positives = 7/37 (18%), Gaps = 1/37 (2%)

Query: 27 APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITI 63
          +          +          +      F P  IT 
Sbjct: 2  SAPTLFPLVSCENSNPSSTV-AVGCLAQDFLPDSITF 37


>1oga_E TRBC1, T-cell receptor beta chain C region; immune
          system/receptor, immune system/receptor/complex, TCR,
          MHC, immunodominance, FLU, complex; 1.40A {Homo
          sapiens} (E:119-252)
          Length = 134

 Score = 25.0 bits (54), Expect = 4.5
 Identities = 6/37 (16%), Positives = 16/37 (43%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
          P + + + P + E +      +    +GF+P  + + 
Sbjct: 4  PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS 40


>3liu_A Putative cell adhesion protein; structural genomics, joint
           center for structural genomics, JCSG, protein structure
           initiative, PSI-2; 2.05A {Parabacteroides distasonis}
           (A:175-208,A:266-402)
          Length = 171

 Score = 25.1 bits (54), Expect = 4.6
 Identities = 7/64 (10%), Positives = 17/64 (26%), Gaps = 4/64 (6%)

Query: 9   YNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSS 68
                 Y  +   +        T     + ++R     Y I++ + G           S+
Sbjct: 95  ITKENCYYAIP--VGEEVTIDGTEKRSKFYVQRN--YKYEISLTIIGPGSEIPYDPXIST 150

Query: 69  ILMV 72
            +  
Sbjct: 151 NVSA 154


>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester
          hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus
          musculus} (H:118-227)
          Length = 110

 Score = 25.3 bits (55), Expect = 4.7
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 28 PSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIE 64
                  P   + +G +   +   V G+ P  +T+ 
Sbjct: 4  APSVYPLAPVCGDTSGSSV-TLGCLVKGYFPEPVTLT 39


>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
           structural genomics, riken structural
           genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
           (A:)
          Length = 134

 Score = 25.0 bits (54), Expect = 5.5
 Identities = 4/74 (5%), Positives = 17/74 (22%)

Query: 27  APSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMVRGEKKSEEKETVEY 86
                 A+   D    G ++  + + V         +        +  + +      +  
Sbjct: 12  ESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHP 71

Query: 87  LHRGIAKRAFERRF 100
                    ++ + 
Sbjct: 72  GCGPHTTFRWQVKL 85


>2z1d_A Hydrogenase expression/formation protein HYPD; [NIFE]
           hydrogenase maturation, [4Fe-4S] cluster, thiol redox;
           HET: CSW; 2.07A {Thermococcus kodakarensis KOD1}
           (A:1-68,A:193-260,A:347-372)
          Length = 162

 Score = 24.7 bits (54), Expect = 6.6
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 22  LDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSEITIEVDSSILMV 72
             GL AP   S              Y I   V+GF P+++      +ILM+
Sbjct: 70  FQGLIAPGHVSTIIGVKGWEYLTEKYGIPQVVAGFEPNDVL----MAILML 116


>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF
           superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
           (A:)
          Length = 282

 Score = 24.0 bits (51), Expect = 9.2
 Identities = 9/49 (18%), Positives = 16/49 (32%)

Query: 91  IAKRAFERRFQLADFVEVMSASLENGLLYLELLRSVPERMKPRRIEISQ 139
            +     R   +A  VE    +  +  LYL+L+  V            +
Sbjct: 10  HSSGLVPRGSHMAPIVETAKETNSDSSLYLDLMIKVLAGTVYEDPAHRE 58


>1to6_A Glycerate kinase; glycerate metabolism, structural genomics
           T831, PSI, protein structure initiative; 2.50A
           {Neisseria meningitidis serogroup A} (A:1-50,A:262-371)
          Length = 160

 Score = 23.9 bits (52), Expect = 9.8
 Identities = 5/36 (13%), Positives = 10/36 (27%)

Query: 14  GYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRI 49
                 S+L+       +       +E T  N   +
Sbjct: 119 NIQAAFSILEKSEPLEDSLKNASLYLEHTASNIGHL 154


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.131    0.348 

Gapped
Lambda     K      H
   0.267   0.0525    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,110,419
Number of extensions: 47385
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 39
Length of query: 157
Length of database: 4,956,049
Length adjustment: 81
Effective length of query: 76
Effective length of database: 2,217,844
Effective search space: 168556144
Effective search space used: 168556144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.9 bits)