BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780621|ref|YP_003065034.1| small heat shock protein
[Candidatus Liberibacter asiaticus str. psy62]
         (157 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780621|ref|YP_003065034.1| small heat shock protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 157

 Score =  317 bits (813), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSE 60
           MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSE
Sbjct: 1   MRLDVSRIYNSAVGYDTVLSMLDGLGAPSQTSAYPPYDIERTGENAYRITIAVSGFHPSE 60

Query: 61  ITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYL 120
           ITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYL
Sbjct: 61  ITIEVDSSILMVRGEKKSEEKETVEYLHRGIAKRAFERRFQLADFVEVMSASLENGLLYL 120

Query: 121 ELLRSVPERMKPRRIEISQSPQESTKMIEEKKKSVAA 157
           ELLRSVPERMKPRRIEISQSPQESTKMIEEKKKSVAA
Sbjct: 121 ELLRSVPERMKPRRIEISQSPQESTKMIEEKKKSVAA 157


>gi|254780495|ref|YP_003064908.1| superoxide dismutase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 205

 Score = 23.5 bits (49), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 81  KETVEYLHRGIAKRAFERRFQLADFVEVMSASLE 114
           KET+EY H    K   +   +LA   E++  SLE
Sbjct: 21  KETLEYHHDVHHKNYADNALKLASDAEMLHLSLE 54


>gi|254780384|ref|YP_003064797.1| serralysin [Candidatus Liberibacter asiaticus str. psy62]
          Length = 665

 Score = 23.5 bits (49), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)

Query: 1   MRLDVSRIYNSAVGYDTVLSM--------LDGLGAP-SQTSAYPPYDIERTGENAYRITI 51
           +  D + ++   +G  T+LS           GL  P S    YP Y ++   EN   +T 
Sbjct: 102 INFDKADVWRYGIGKGTILSHNALHEIGHALGLMHPGSYNGGYPVYGVDNDYENDSFLTS 161

Query: 52  AVSGFHPSE 60
            +S F P +
Sbjct: 162 VMSYFMPQD 170


>gi|254780684|ref|YP_003065097.1| flagellum-specific ATP synthase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 438

 Score = 21.9 bits (45), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 112 SLENGLLYLELLRSVPERMKPRRIE 136
           SL  G L +E++  VP  M  +R+E
Sbjct: 118 SLGKGDLSMEIMSKVPPAMNRQRVE 142


>537021.9.peg.817_1 
          Length = 148

 Score = 21.2 bits (43), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 114 ENGLLYLELLRSVPERMKPRR 134
           EN L Y E+L  +  R+ PR+
Sbjct: 34  ENALAYYEILELILFRLIPRK 54


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.314    0.131    0.348 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,371
Number of Sequences: 1233
Number of extensions: 3332
Number of successful extensions: 9
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 8
length of query: 157
length of database: 328,796
effective HSP length: 67
effective length of query: 90
effective length of database: 246,185
effective search space: 22156650
effective search space used: 22156650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 35 (18.1 bits)