HHsearch alignment for GI: 254780622 and conserved domain: COG1036
>COG1036 Archaeal flavoproteins [Energy production and conversion].
Probab=99.57 E-value=1.6e-14 Score=113.20 Aligned_cols=143 Identities=23% Similarity=0.345 Sum_probs=96.1
Q ss_pred CCCEEEEEEECHHH-HHHHHHHHHHHHHC--CCEEEEEECHHHHHHCCHH----HHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 85569999528478-99999999999987--9889998585686306989----99997479758207678877877430
Q gi|254780622|r 4 SGKKIALIMCGSVA-VYKSLDLIRRLRER--GAVVIPVMTKSAQKFITPL----IVGAISNRRVYTHLLSYKEGYESNHI 76 (405)
Q Consensus 4 ~~k~IllgvtGsia-a~k~~~l~~~L~~~--g~~V~vv~T~~A~~fi~~~----~l~~lt~~~v~~~~~~~~~~~~~~Hi 76 (405)
T Consensus 7 ~~~rIaWgITGaG~~L~Et~~imk~lk~~~~~~~v~v~lSkageeVvk~YgL~~~l~~~~~~-~~~e~-~ansPfi~Grl 84 (187)
T COG1036 7 KKKRIAWGITGAGHLLPETYQIMKELKKEYGDVEVDVFLSKAGEEVVKMYGLWDKLEKIFGG-LEVEI-GANSPFIAGRL 84 (187)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCC-EEEEC-CCCCCCEECCE
T ss_conf 36158999705530109999999999864588058876223089999999899999987598-67643-89997453110
Q ss_pred CCCCCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHH-H-CCCCCEEEECCCCCH--------------HHHHHHHHHHHH
Q ss_conf 011446557884111888988520245521466675-2-279968984056600--------------000388999999
Q gi|254780622|r 77 QLANECDLLVVAPASANFIAHVAHGMVYDLASAILL-A-KGDQPVLIAPAMNFM--------------MWAKPATQRNVE 140 (405)
Q Consensus 77 ~l~~~aD~~iVaPaTaNtiaK~A~GiaD~llt~~~l-a-~~~~pi~iaPaMn~~--------------M~~~p~~~~nl~ 140 (405)
T Consensus 85 qlGk-YD~llvaPaTsNTvAKIa~GIADtLVTNAVaqa~Kg~VPvyivP~D~k~G~V~t~~~gGk~~el~vR~vDvenv~ 163 (187)
T COG1036 85 QLGK-YDFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVPVDYKEGTVETTLPGGKKLELRVRKVDVENVE 163 (187)
T ss_pred ECCC-CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEECCCCCCEEEEEEEECCHHHHH
T ss_conf 0253-017998246563189998655789999999996078986899345565775887279995789998622167799
Q ss_pred HHHHH-CCCC
Q ss_conf 98640-0013
Q gi|254780622|r 141 ILQKD-GCYF 149 (405)
Q Consensus 141 ~L~~~-g~~v 149 (405)
T Consensus 164 kl~~megi~V 173 (187)
T COG1036 164 KLAQMEGIEV 173 (187)
T ss_pred HHHHCCCEEE
T ss_conf 9984269088