HHsearch alignment for GI: 254780622 and conserved domain: PRK01747

>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed.
Probab=92.53  E-value=0.73  Score=25.35  Aligned_cols=98  Identities=27%  Similarity=0.277  Sum_probs=50.6

Q ss_pred             EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH-H----HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf             8405660000038899999998640001346521-2----5531032233343455899999998631013200179778
Q gi|254780622|r  121 IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPES-G----AMAESNGYGVGRMSEPCDIIRQITWLLYKSKELLLKGKRA  195 (405)
Q Consensus       121 iaPaMn~~M~~~p~~~~nl~~L~~~g~~vi~P~~-g----~la~c~~~G~grl~e~~~I~~~~~~~~~~~~~~~l~gk~v  195 (405)
T Consensus       170 F~P~~np~mW~-~~~~~~~~~~~~~~~~~~T~taag~Vrr~L~~~GF~-v~k~------------------~-G~~~Kre  228 (660)
T PRK01747        170 FAPAKNPDMWS-PNLFNALARLARPGATLATFTSAGFVRRGLQEAGFT-VKKV------------------K-GFGRKRE  228 (660)
T ss_pred             CCCCCCCCCCC-HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCE-EEEC------------------C-CCCCCCC
T ss_conf             78555823068-899999999728997588630458999999978966-9866------------------7-7887440


Q ss_pred             EEEEC---CCHH-----------EECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             98404---2010-----------10213576215772788999999982588389984
Q gi|254780622|r  196 LVTSG---PTYE-----------PLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS  239 (405)
Q Consensus       196 lITaG---~T~E-----------~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~  239 (405)
T Consensus       229 ml~g~~~~~~~~~~~~~w~~~~~~~~~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlD  286 (660)
T PRK01747        229 MLVGVLEQSLPPPLAAPWFARPHSSKRNRDAAIIGGGIAGAALALALARRGWQVTLYE  286 (660)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf             3687716776777788642466655788718998938999999999997899689994