HHsearch alignment for GI: 254780622 and conserved domain: PRK01747
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed.
Probab=92.53 E-value=0.73 Score=25.35 Aligned_cols=98 Identities=27% Similarity=0.277 Sum_probs=50.6
Q ss_pred EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCH-H----HHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEE
Q ss_conf 8405660000038899999998640001346521-2----5531032233343455899999998631013200179778
Q gi|254780622|r 121 IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPES-G----AMAESNGYGVGRMSEPCDIIRQITWLLYKSKELLLKGKRA 195 (405)
Q Consensus 121 iaPaMn~~M~~~p~~~~nl~~L~~~g~~vi~P~~-g----~la~c~~~G~grl~e~~~I~~~~~~~~~~~~~~~l~gk~v 195 (405)
T Consensus 170 F~P~~np~mW~-~~~~~~~~~~~~~~~~~~T~taag~Vrr~L~~~GF~-v~k~------------------~-G~~~Kre 228 (660)
T PRK01747 170 FAPAKNPDMWS-PNLFNALARLARPGATLATFTSAGFVRRGLQEAGFT-VKKV------------------K-GFGRKRE 228 (660)
T ss_pred CCCCCCCCCCC-HHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCCE-EEEC------------------C-CCCCCCC
T ss_conf 78555823068-899999999728997588630458999999978966-9866------------------7-7887440
Q ss_pred EEEEC---CCHH-----------EECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98404---2010-----------10213576215772788999999982588389984
Q gi|254780622|r 196 LVTSG---PTYE-----------PLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS 239 (405)
Q Consensus 196 lITaG---~T~E-----------~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~ 239 (405)
T Consensus 229 ml~g~~~~~~~~~~~~~w~~~~~~~~~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlD 286 (660)
T PRK01747 229 MLVGVLEQSLPPPLAAPWFARPHSSKRNRDAAIIGGGIAGAALALALARRGWQVTLYE 286 (660)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 3687716776777788642466655788718998938999999999997899689994