HHsearch alignment for GI: 254780622 and conserved domain: PRK03806
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.
Probab=90.55 E-value=0.86 Score=24.90 Aligned_cols=70 Identities=19% Similarity=0.209 Sum_probs=36.9
Q ss_pred CCCCCEEEE-EEECH-HHHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 888556999-95284-78999999999999879889998585686306989999974-7975820767887787743001
Q gi|254780622|r 2 DLSGKKIAL-IMCGS-VAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAIS-NRRVYTHLLSYKEGYESNHIQL 78 (405)
Q Consensus 2 ~l~~k~Ill-gvtGs-iaa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~l~~lt-~~~v~~~~~~~~~~~~~~Hi~l 78 (405)
T Consensus 3 d~~~k~v~V~GlG~sG~s------~~~~L~~~G~~v~~~D~~~~-----~~~~~~l~~~~~~~~---g~~------~~~~ 62 (438)
T PRK03806 3 DYQGKNVVIIGLGLTGLS------CVDFFLARGVTPRVMDTRMT-----PPGLDKLPENVERHT---GSL------NDEW 62 (438)
T ss_pred CCCCCEEEEEEECHHHHH------HHHHHHHCCCEEEEEECCCC-----CHHHHHHHCCCCEEE---CCC------CHHH
T ss_conf 778998999945788899------99999978996999989999-----005788645884665---777------9668
Q ss_pred CCCCCEEEEEECC
Q ss_conf 1446557884111
Q gi|254780622|r 79 ANECDLLVVAPAS 91 (405)
Q Consensus 79 ~~~aD~~iVaPaT 91 (405)
T Consensus 63 ~~~~d~vV~SPGI 75 (438)
T PRK03806 63 LLAADLIVASPGI 75 (438)
T ss_pred HCCCCEEEECCCC
T ss_conf 0679999989978