HHsearch alignment for GI: 254780622 and conserved domain: PRK09186
>PRK09186 flagellin modification protein A; Provisional.
Probab=97.04 E-value=0.003 Score=40.66 Aligned_cols=77 Identities=25% Similarity=0.335 Sum_probs=50.7
Q ss_pred CCCCCEEEEEECCCHHEECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC--------CC--CCCCCEEEE--EH-
Q ss_conf 017977898404201010213576215772788999999982588389984156--------67--765674675--46-
Q gi|254780622|r 189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPV--------SI--ADPPNVMTI--HV- 255 (405)
Q Consensus 189 ~l~gk~vlITaG~T~E~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~g~~--------~~--~~~~~~~~i--~v- 255 (405)
T Consensus 1 lL~gK~~lVTGg----------------s~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt 64 (255)
T PRK09186 1 MLEGKTILITGA----------------GGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDIT 64 (255)
T ss_pred CCCCCEEEEECC----------------CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 989598999795----------------8689999999999879999999698899999999998705980799984689
Q ss_pred --HHHHHHHHHHHHCC-CCCEEEEEHHHH
Q ss_conf --57789999998505-888799740444
Q gi|254780622|r 256 --ERAEDMLQEVLKAL-PVDIAVMVSAVS 281 (405)
Q Consensus 256 --~t~~em~~~~~~~~-~~D~~I~aAAVS 281 (405)
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lVnnA~~~ 93 (255)
T PRK09186 65 DQESLEEFLSKSQERYGKIDGAVNCAYPR 93 (255)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 99999999999999819977899757667