HHsearch alignment for GI: 254780622 and conserved domain: PRK09186

>PRK09186 flagellin modification protein A; Provisional.
Probab=97.04  E-value=0.003  Score=40.66  Aligned_cols=77  Identities=25%  Similarity=0.335  Sum_probs=50.7

Q ss_pred             CCCCCEEEEEECCCHHEECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCC--------CC--CCCCCEEEE--EH-
Q ss_conf             017977898404201010213576215772788999999982588389984156--------67--765674675--46-
Q gi|254780622|r  189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPV--------SI--ADPPNVMTI--HV-  255 (405)
Q Consensus       189 ~l~gk~vlITaG~T~E~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~g~~--------~~--~~~~~~~~i--~v-  255 (405)
T Consensus         1 lL~gK~~lVTGg----------------s~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~Dvt   64 (255)
T PRK09186          1 MLEGKTILITGA----------------GGLIGSALVKAILEAGGIVIAADINKEALNKLLESLGTIEKTKLTLVELDIT   64 (255)
T ss_pred             CCCCCEEEEECC----------------CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf             989598999795----------------8689999999999879999999698899999999998705980799984689


Q ss_pred             --HHHHHHHHHHHHCC-CCCEEEEEHHHH
Q ss_conf             --57789999998505-888799740444
Q gi|254780622|r  256 --ERAEDMLQEVLKAL-PVDIAVMVSAVS  281 (405)
Q Consensus       256 --~t~~em~~~~~~~~-~~D~~I~aAAVS  281 (405)
T Consensus        65 ~~~~v~~~~~~~~~~~g~id~lVnnA~~~   93 (255)
T PRK09186         65 DQESLEEFLSKSQERYGKIDGAVNCAYPR   93 (255)
T ss_pred             CHHHHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf             99999999999999819977899757667