HHsearch alignment for GI: 254780622 and conserved domain: TIGR02699

>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA; InterPro: IPR014072 The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases..

Probab=99.65  E-value=2.9e-16  Score=124.49  Aligned_cols=143  Identities=21%  Similarity=0.359  Sum_probs=102.5

Q ss_pred             EEEEEEECHHH-HHHHHHHHHHHHHC-CC--EEEEEECHHHHHHCCHHH-HHHHHCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf             69999528478-99999999999987-98--899985856863069899-9997479--758207678877877430011
Q gi|254780622|r    7 KIALIMCGSVA-VYKSLDLIRRLRER-GA--VVIPVMTKSAQKFITPLI-VGAISNR--RVYTHLLSYKEGYESNHIQLA   79 (405)
Q Consensus         7 ~IllgvtGsia-a~k~~~l~~~L~~~-g~--~V~vv~T~~A~~fi~~~~-l~~lt~~--~v~~~~~~~~~~~~~~Hi~l~   79 (405)
T Consensus         1 ~iAWGITGsGd~L~Et~~im~~vK~~y~~rV~~~vfLSK~G~~VvKyY~L~~~L~~~F~~~~Ve~-~ANsPFLaG~lQ~G   79 (176)
T TIGR02699         1 RIAWGITGSGDKLPETVEIMKDVKKKYGDRVEIDVFLSKAGEQVVKYYKLWDKLEEDFDDLRVEI-NANSPFLAGQLQLG   79 (176)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEHHHHHHHHHHHCCCEEEEE-CCCCCCCCCCCCCC
T ss_conf             90342028998416788888997520598789999860586745316676788863106405870-78678100641346


Q ss_pred             CCCCEEEEEECCHHHHHHHHCCCCCCHHHHHHHH--CCCCCEEEECCCCCH------HHHH--------HHHHHHHHHHH
Q ss_conf             4465578841118889885202455214666752--279968984056600------0003--------88999999986
Q gi|254780622|r   80 NECDLLVVAPASANFIAHVAHGMVYDLASAILLA--KGDQPVLIAPAMNFM------MWAK--------PATQRNVEILQ  143 (405)
Q Consensus        80 ~~aD~~iVaPaTaNtiaK~A~GiaD~llt~~~la--~~~~pi~iaPaMn~~------M~~~--------p~~~~nl~~L~  143 (405)
T Consensus        80 ~-YdflLvAPATaNtvAKI~~GIADtLvtNAv~~a~KA~vPvYI~P~D~k~G~V~T~lP~gk~L~L~~r~~DVe~v~kL~  158 (176)
T TIGR02699        80 K-YDFLLVAPATANTVAKIAYGIADTLVTNAVIQALKAKVPVYIMPSDYKEGTVKTALPDGKKLELRMRKVDVENVEKLA  158 (176)
T ss_pred             E-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEECCCCCEEEEEEEEECHHHHHHHH
T ss_conf             0-110221554210156444303337899999963168744686278898325898569896168987641202468876


Q ss_pred             H-HCCCCCC
Q ss_conf             4-0001346
Q gi|254780622|r  144 K-DGCYFIG  151 (405)
Q Consensus       144 ~-~g~~vi~  151 (405)
T Consensus       159 ~Me~i~vL~  167 (176)
T TIGR02699       159 QMEGIEVLE  167 (176)
T ss_pred             HHCCCCCCC
T ss_conf             515711037