HHsearch alignment for GI: 254780622 and conserved domain: TIGR03590
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=93.05 E-value=0.73 Score=25.34 Aligned_cols=225 Identities=20% Similarity=0.258 Sum_probs=103.2
Q ss_pred EEEEEEECHH-----HHHHHHHHHHHHHHCCCEEEEEECHHHHHHCCHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCC-
Q ss_conf 6999952847-----8999999999999879889998585686306989999974797582--0767887787743001-
Q gi|254780622|r 7 KIALIMCGSV-----AVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYT--HLLSYKEGYESNHIQL- 78 (405)
Q Consensus 7 ~IllgvtGsi-----aa~k~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~l~~lt~~~v~~--~~~~~~~~~~~~Hi~l- 78 (405)
T Consensus 2 kI~fr~d~~~~iG~GH~~RclaLA~~l~~~g~~v~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (280)
T TIGR03590 2 RILFRADASSEIGLGHVMRCLTLARELRKRGAEVAFACKTLPGDLIDLI---LSAGFPVYVLPDTSSWQDD-ALELINLL 77 (280)
T ss_pred EEEEEEECCCCEEHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHH---HHCCCCEEECCCCCCCCCC-HHHHHHHH
T ss_conf 7999996789913208999999999999889949999927958899999---9759817981675652012-99999999
Q ss_pred -CCCCCEEEEE--ECCHHHHHHHHCCCCCCHHHHHHHHCCCCCEEEECCCCCH-HH----H--HH-HHHHHHHHHHHHC-
Q ss_conf -1446557884--1118889885202455214666752279968984056600-00----0--38-8999999986400-
Q gi|254780622|r 79 -ANECDLLVVA--PASANFIAHVAHGMVYDLASAILLAKGDQPVLIAPAMNFM-MW----A--KP-ATQRNVEILQKDG- 146 (405)
Q Consensus 79 -~~~aD~~iVa--PaTaNtiaK~A~GiaD~llt~~~la~~~~pi~iaPaMn~~-M~----~--~p-~~~~nl~~L~~~g- 146 (405)
T Consensus 78 ~~~~~d~vIiD~y~~~~~~~~~lk--------------~~~~~~i~iDD~~~~~~~~d~vin~~~~~~~~~y~~~~~~~~ 143 (280)
T TIGR03590 78 EKEKFDILIVDHYALDADWEKLIK--------------HFGRKLLVIDDLADRPHDCDLLLDQNPGADALDYQGLVPANC 143 (280)
T ss_pred HHCCCCEEEEECCCCCHHHHHHHH--------------HHCCEEEEEECCCCCCCCCCEEECCCCCCCHHHHCCCCCCCC
T ss_conf 737979999925999979999999--------------839839999367654656142541454447566364488676
Q ss_pred CCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHEECCEEEEECCCCCHHHHHHHH
Q ss_conf 01346521255310322333434558999999986310132001797789840420101021357621577278899999
Q gi|254780622|r 147 CYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAK 226 (405)
Q Consensus 147 ~~vi~P~~g~la~c~~~G~grl~e~~~I~~~~~~~~~~~~~~~l~gk~vlITaG~T~E~ID~VR~ItN~SSGk~G~~iA~ 226 (405)
T Consensus 144 ~~l~G~~Y~------------~lr~~-F~~-~~~~~~-~~---~~~~~Ili~~GGs----D~~~---------lt~~il~ 192 (280)
T TIGR03590 144 RLLLGPSYA------------LLREE-FYQ-LRTANK-RR---KPLRRVLVSFGGA----DPDN---------LTLKLLS 192 (280)
T ss_pred EEEECCCCC------------CCCHH-HHH-HHHHHH-CC---CCCCEEEEEECCC----CHHH---------HHHHHHH
T ss_conf 698657534------------35788-876-303221-03---6553289997787----7000---------8999999
Q ss_pred HHHH--CCCCEEEEECCCCCCC---------CCCEEEEEHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHH
Q ss_conf 9982--5883899841566776---------567467546577899999985058887997404444432
Q gi|254780622|r 227 SLAY--FGAEVILISGPVSIAD---------PPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRF 285 (405)
Q Consensus 227 ~~~~--~Ga~V~li~g~~~~~~---------~~~~~~i~v~t~~em~~~~~~~~~~D~~I~aAAVSDf~~ 285 (405)
T Consensus 193 ~l~~~~~~~~i~vvig~~~~~~~~i~~~~~~~~~~~~--~~~~~~m~~~m~---~aDlaI~agG~t~~El 257 (280)
T TIGR03590 193 ALAESQINISITLVTGSSNPNLDELKKFAKEYPNIIL--FIDVENMAELMN---EADLAIGAAGSTSWER 257 (280)
T ss_pred HHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEE--ECCHHHHHHHHH---HCCEEEECCCHHHHHH
T ss_conf 9985166856799986798766999999972899699--659889999999---7799998596589999