HHsearch alignment for GI: 254780622 and conserved domain: pfam01488
>pfam01488 Shikimate_DH Shikimate / quinate 5-dehydrogenase. This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyses the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate.
Probab=91.66 E-value=0.37 Score=27.23 Aligned_cols=76 Identities=22% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCCCEEEEEECCCHHEECCEEEEECCCCCHHHHHHHHHHHHCCCCEEEEECCCCC-------CC-CCCEEEEEHHHHHH
Q ss_conf 01797789840420101021357621577278899999998258838998415667-------76-56746754657789
Q gi|254780622|r 189 LLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSI-------AD-PPNVMTIHVERAED 260 (405)
Q Consensus 189 ~l~gk~vlITaG~T~E~ID~VR~ItN~SSGk~G~~iA~~~~~~Ga~V~li~g~~~~-------~~-~~~~~~i~v~t~~e 260 (405)
T Consensus 9 ~l~~~~vlVIG-----------------aG~~~~~~~~~L~~~g~~~i~v~nRt~~ka~~la~~~~~~~~~~~~---~~~ 68 (134)
T pfam01488 9 DLKGKKVLLIG-----------------AGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGEEVEALP---LDE 68 (134)
T ss_pred CCCCCEEEEEC-----------------CCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEE---CHH
T ss_conf 81489899999-----------------6099999999999759988999547578999999984997258985---135
Q ss_pred HHHHHHHCCCCCEEEEEHHHHHHHHHH
Q ss_conf 999998505888799740444443222
Q gi|254780622|r 261 MLQEVLKALPVDIAVMVSAVSDWRFPK 287 (405)
Q Consensus 261 m~~~~~~~~~~D~~I~aAAVSDf~~~~ 287 (405)
T Consensus 69 l~~~l~---~~DivI~aT~s~~~ii~~ 92 (134)
T pfam01488 69 LEELLA---EADIVISATSAPTPIITK 92 (134)
T ss_pred HHHHHH---HCCEEEEECCCCCCEECH
T ss_conf 441363---199999925999736489