HHsearch alignment for GI: 254780622 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=95.53 E-value=0.052 Score=32.70 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCEEEEEECHHHHHHCCHHHHHH
Q ss_conf 9999999998798899985856863069899999
Q gi|254780622|r 21 SLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGA 54 (405)
Q Consensus 21 ~~~l~~~L~~~g~~V~vv~T~~A~~fi~~~~l~~ 54 (405)
T Consensus 11 Gs~l~~~L~~~g~~v~~~-~r~~~D~~d~~~l~~ 43 (284)
T pfam04321 11 GRELTRLLAERGVEVVAL-DRPELDLTDPEAVAA 43 (284)
T ss_pred HHHHHHHHHHCCCEEEEE-CCCCCCCCCHHHHHH
T ss_conf 999999998689989995-486257889999999