RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780622|ref|YP_003065035.1| bifunctional
phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
[Candidatus Liberibacter asiaticus str. psy62]
         (405 letters)



>gnl|CDD|30801 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase
           [Coenzyme metabolism].
          Length = 392

 Score =  332 bits (853), Expect = 1e-91
 Identities = 178/402 (44%), Positives = 249/402 (61%), Gaps = 14/402 (3%)

Query: 3   LSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYT 62
           L GK+I L + GS+A YKS++L+R LR  GA V  VMT+SA+KFITPL   A+S   VYT
Sbjct: 2   LEGKRILLGVTGSIAAYKSVELVRLLRRSGAEVRVVMTESARKFITPLTFQALSGNPVYT 61

Query: 63  HLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVLIA 122
            L     G    HI+LA   DLL+VAPA+AN IA +A G+  +L++  LLA    P+++A
Sbjct: 62  LLDEELTG-SVEHIELARWADLLLVAPATANTIAKLAVGIADNLSTTTLLAA-KAPLVLA 119

Query: 123 PAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLL 182
           PAMN +M+  PATQ N++ L+ +G  FI P  G +A+    G GR++EP +I+     LL
Sbjct: 120 PAMNVIMYTHPATQENLQRLKSEGVLFIEPIEGELADV---GDGRLAEPEEIVEAALALL 176

Query: 183 YKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPV 242
                  LKGK+ L+T+GPT E +DP+R+I+NRSSG+ G A+A +    GA V L+SGP 
Sbjct: 177 KTPD---LKGKKVLITAGPTREYIDPVRFISNRSSGKMGFALAAAAKRRGASVTLVSGPT 233

Query: 243 SIADPPNVMTIHVERAEDMLQEVLK-ALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGDT 301
           S+  P  V  + VE AE+ML  VL+ ALP DI +  +AV+D+R   +A  KI  K  G+ 
Sbjct: 234 SLKIPAGVEVVKVESAEEMLNAVLEAALPADIFISAAAVADYRPKWVAEAKI--KKQGEP 291

Query: 302 MRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPDT 361
            +++L+ NPDIL  +     + +I+VGFAAET  I + AREKL  K  D IV+N +    
Sbjct: 292 FKLELVPNPDILASVARDYPKKNILVGFAAETGDIVEYAREKLERKNLDLIVANDV--SE 349

Query: 362 GFVGKEWNKVSIVFPDK-IEEYPELPKAEVADRLCHLIVEHL 402
              G + N+V I+  D    E PE+ K E+A+R+   I E L
Sbjct: 350 IGFGSDDNEVRIIDKDGEDVELPEMSKEELAERILDEIAELL 391


>gnl|CDD|146655 pfam04127, DFP, DNA / pantothenate metabolism flavoprotein.  The
           DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36)
           affects synthesis of DNA, and pantothenate metabolism.
          Length = 197

 Score =  136 bits (344), Expect = 1e-32
 Identities = 73/193 (37%), Positives = 108/193 (55%), Gaps = 18/193 (9%)

Query: 191 KGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVS--IADPP 248
           KG+R LVTSG T EP+DP+R+I+N SSG+ G AIA+     GA+V LI+G  S       
Sbjct: 1   KGRRVLVTSGGTREPIDPVRFISNFSSGKMGAAIAEEFLKRGADVTLIAGKGSLKPEPSG 60

Query: 249 NVMTIHVERAEDMLQEVLKALP--VDIAVMVSAVSDWRFPKIAGTKIKRKDIGDTMRIDL 306
           N++ I VE AE+ML  + +  P   D+ ++ +AVSD+R  ++A  KI     G  + ++L
Sbjct: 61  NLLIIPVETAEEMLNALKEIAPDLHDVFILAAAVSDFRPKEMAEHKISS---GSELTLEL 117

Query: 307 MENPDILKIIGHHQCRPSI-VVGFAAETQCIEQN----AREKLLNKGADFIVSNCILPDT 361
             NP I+  +      P+  +VGF AET   E+     AR+KL     D +++N    D 
Sbjct: 118 KPNPKIISYVKEWN--PNAFLVGFKAETGVDEEELIDKARKKLEKYNHDLVIAN----DV 171

Query: 362 GFVGKEWNKVSIV 374
              G + N+V IV
Sbjct: 172 EGFGTDKNRVIIV 184


>gnl|CDD|145534 pfam02441, Flavoprotein, Flavoprotein.  This family contains
           diverse flavoprotein enzymes. This family includes
           epidermin biosynthesis protein, EpiD, which has been
           shown to be a flavoprotein that binds FMN. This enzyme
           catalyses the removal of two reducing equivalents from
           the cysteine residue of the C-terminal meso-lanthionine
           of epidermin to form a --C==C-- double bond. This family
           also includes the B chain of dipicolinate synthase a
           small polar molecule that accumulates to high
           concentrations in bacterial endospores, and is thought
           to play a role in spore heat resistance, or the
           maintenance of heat resistance. dipicolinate synthase
           catalyses the formation of dipicolinic acid from
           dihydroxydipicolinic acid. This family also includes
           phenylacrylic acid decarboxylase (EC:4.1.1.-).
          Length = 118

 Score =  117 bits (296), Expect = 6e-27
 Identities = 50/121 (41%), Positives = 76/121 (62%), Gaps = 5/121 (4%)

Query: 6   KKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRVYTHLL 65
           KKI L + GS A  K+L L+R L++ GA V  +++K+A+KFITP  + A+    VYT   
Sbjct: 1   KKILLGITGSSAAIKALRLLRELKKEGAEVRVILSKAAKKFITPETLEALLGNPVYT--- 57

Query: 66  SYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLA--KGDQPVLIAP 123
              +     HI+L+   DL+VVAPA+AN +A +A+G+  +L +   LA  K  +P++IAP
Sbjct: 58  DENDEGAPIHIELSRWADLMVVAPATANTLAKIANGIADNLLTRAALAALKERKPLVIAP 117

Query: 124 A 124
           A
Sbjct: 118 A 118


>gnl|CDD|35891 KOG0672, KOG0672, KOG0672, Halotolerance protein HAL3 (contains
           flavoprotein domain) [Inorganic ion transport and
           metabolism, Cell cycle control, cell division,
           chromosome partitioning].
          Length = 218

 Score = 75.4 bits (185), Expect = 2e-14
 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 14/186 (7%)

Query: 8   IALIMCGSVAVYKSLDLIRRLRE---RGAVVIPV-MTKSAQKFITPLIVGAISNRRVYTH 63
           + L   GSVAV K   LI++L E   R  + I V +TKSA  F+  L +       +YT 
Sbjct: 23  VLLGATGSVAVIKLPLLIKKLEEIYGRDKISIQVVVTKSATHFLEKLKLNKHVQ--LYTD 80

Query: 64  LLSYKEGYESN----HIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLA-KGDQP 118
              +K     +    HI+L    D+L++AP SAN +A +A+G+  +L ++++ A    +P
Sbjct: 81  EDEWKMWKSRSDPVLHIELRRWADILLIAPLSANTLAKIANGLCDNLLTSVIRAWDPSKP 140

Query: 119 VLIAPAMNFMMWAKPATQRNVEILQKD--GCYFIGPESGAMAESNGYGVGRMSEPCDIIR 176
           +L+APAMN +MW  P T++++  L+++  G   I P    +   +  G+G M+E   I+ 
Sbjct: 141 ILLAPAMNTLMWNNPMTKKHLTSLKEEYPGITVIKPIEKVLICGD-IGLGGMAEWGTIVS 199

Query: 177 QITWLL 182
           ++   L
Sbjct: 200 KVRRKL 205


>gnl|CDD|31239 COG1036, COG1036, Archaeal flavoproteins [Energy production and
           conversion].
          Length = 187

 Score = 38.0 bits (88), Expect = 0.005
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)

Query: 83  DLLVVAPASANFIAHVAHGMVYDLA--SAILLAKGDQPVLIAP 123
           D L+VAPA++N +A +A+G+   L   +     KG  PV I P
Sbjct: 90  DFLLVAPATSNTVAKIAYGIADTLVTNAVAQAGKGKVPVYIVP 132


>gnl|CDD|37939 KOG2728, KOG2728, KOG2728, Uncharacterized conserved protein with
           similarity to phosphopantothenoylcysteine
           synthetase/decarboxylase [General function prediction
           only].
          Length = 302

 Score = 34.2 bits (78), Expect = 0.060
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 190 LKGKR-ALVTSGPTYEPLD--PMRYIANRSSGQQGHAIAKSLAYFGAEVILI 238
           L+G+R  LVTSG T  PL+   +R+I N S+G +G A A+     G  VI +
Sbjct: 28  LQGRRIVLVTSGGTTVPLEQNTVRFIDNFSAGTRGAASAEYFLAAGYAVIFL 79


>gnl|CDD|30512 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase
           [Coenzyme metabolism].
          Length = 191

 Score = 32.5 bits (74), Expect = 0.22
 Identities = 23/104 (22%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 6   KKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFI---TPLIVGAISNRRVYT 62
           K+I + + G+      + L+  LRE G     V++K+A+K +   T           +  
Sbjct: 3   KRIIVGISGASGAIYGVRLLEVLRELGVETHLVISKAAKKTLKYETGNDESLGEVLALAD 62

Query: 63  HLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDL 106
            +   K+   +     +   D +++AP S   +A +AHG   +L
Sbjct: 63  VVHDEKD-IGAPIASGSFRTDGMIIAPCSMKTLAAIAHGFADNL 105


>gnl|CDD|133021 cd02541, UGPase_prokaryotic, Prokaryotic UGPase catalyses the
           synthesis of UDP-glucose.  Prokaryotic UDP-Glucose
           Pyrophosphorylase (UGPase) catalyzes a reversible
           production of UDP-Glucose  and pyrophosphate (PPi) from
           glucose-1-phosphate and UTP.  UDP-glucose plays pivotal
           roles in galactose utilization, in glycogen synthesis,
           and in the synthesis of the carbohydrate moieties of
           glycolipids , glycoproteins , and proteoglycans. UGPase
           is found in both prokaryotes and eukaryotes, although
           prokaryotic and eukaryotic forms of UGPase catalyze the
           same reaction, they share low sequence similarity.
          Length = 267

 Score = 32.1 bits (74), Expect = 0.31
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 5/97 (5%)

Query: 74  NHIQLANECDLL--VVAPASANFIAHVAHGMVYDLASAILLAK---GDQPVLIAPAMNFM 128
             ++   + DLL  V   +    I +V       L  A+L AK   GD+P  +    + +
Sbjct: 72  ETLEKKGKTDLLEEVRIISDLANIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLI 131

Query: 129 MWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGV 165
              +P  ++ +E  +K G   I  E     + + YG+
Sbjct: 132 DSKEPCLKQLIEAYEKTGASVIAVEEVPPEDVSKYGI 168


>gnl|CDD|31231 COG1028, FabG, Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) [Secondary
           metabolites biosynthesis, transport, and catabolism /
           General function prediction only].
          Length = 251

 Score = 29.8 bits (66), Expect = 1.4
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 38/156 (24%)

Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADPPN 249
           L GK ALVT                 SSG  G AIA++LA  GA V++ +          
Sbjct: 3   LSGKVALVTGA---------------SSGI-GRAIARALAREGARVVVAARRSEEEAAEA 46

Query: 250 V------------------MTIHVERAEDMLQEVLKAL-PVDIAVMVSAVSDWRFPKIAG 290
           +                  ++   E  E ++    +    +DI V  + ++    P    
Sbjct: 47  LAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAP---L 103

Query: 291 TKIKRKDIGDTMRIDLMENPDILKIIGHHQCRPSIV 326
            ++  +D    + ++L+    + +       +  IV
Sbjct: 104 EELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIV 139


>gnl|CDD|144716 pfam01225, Mur_ligase, Mur ligase family, catalytic domain.  This
           family contains a number of related ligase enzymes which
           have EC numbers 6.3.2.*. This family includes: MurC,
           MurD, MurE, MurF, Mpl and FolC. MurC, MurD, Mure and
           MurF catalyse consecutive steps in the synthesis of
           peptidoglycan. Peptidoglycan consists of a sheet of two
           sugar derivatives, with one of these N-acetylmuramic
           acid attaching to a small pentapeptide. The pentapeptide
           is is made of L-alanine, D-glutamic acid,
           Meso-diaminopimelic acid and D-alanyl alanine. The
           peptide moiety is synthesized by successively adding
           these amino acids to UDP-N-acetylmuramic acid. MurC
           transfers the L-alanine, MurD transfers the D-glutamate,
           MurE transfers the diaminopimelic acid, and MurF
           transfers the D-alanyl alanine. This family also
           includes Folylpolyglutamate synthase that transfers
           glutamate to folylpolyglutamate.
          Length = 76

 Score = 29.4 bits (67), Expect = 1.9
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 1/49 (2%)

Query: 220 QGHAIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKA 268
            G   A+S    GA  + +S  +     P V  I V    + L E+   
Sbjct: 27  DGSDFAESAIALGAVAV-VSSAIPRDPNPEVPGIPVIDRREALAELAAR 74


>gnl|CDD|36999 KOG1788, KOG1788, KOG1788, Uncharacterized conserved protein
            [Function unknown].
          Length = 2799

 Score = 29.3 bits (65), Expect = 2.1
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 196  LVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILIS-------GPVSIADPP 248
            + T  P++  +      +++SSG QG +   +L     +V+L +       GP S A   
Sbjct: 2028 ISTPHPSHISVSEFDASSDQSSGSQGSSAVHTLFTISPKVLLETDESGYGGGPCS-AGAS 2086

Query: 249  NVMTIHVERAEDMLQEVLKALPV 271
             V+    E   D++ E +KA+  
Sbjct: 2087 AVLDFMAEVCADIMTEQIKAVQA 2109


>gnl|CDD|30968 COG0623, FabI, Enoyl-[acyl-carrier-protein].
          Length = 259

 Score = 29.0 bits (65), Expect = 2.5
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 28/95 (29%)

Query: 188 LLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVSIADP 247
            LL+GKR L+              +AN  S      IAK+LA  GAE+            
Sbjct: 2   GLLEGKRILIMG------------VANNRS--IAWGIAKALAEQGAELAF---------- 37

Query: 248 PNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSD 282
               T   ER E  ++E+ + L  D+ +     +D
Sbjct: 38  ----TYQGERLEKRVEELAEELGSDLVLPCDVTND 68


>gnl|CDD|145578 pfam02514, CobN-Mg_chel, CobN/Magnesium Chelatase.  This family
           contains a domain common to the cobN protein and to
           magnesium protoporphyrin chelatase. CobN is implicated
           in the conversion of hydrogenobyrinic acid a,c-diamide
           to cobyrinic acid. Magnesium protoporphyrin chelatase is
           involved in chlorophyll biosynthesis.
          Length = 1064

 Score = 28.7 bits (65), Expect = 3.2
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 24  LIRRLRERGAVVIPV 38
           LIR L  RG  VIPV
Sbjct: 91  LIRALEARGLNVIPV 105


>gnl|CDD|31163 COG0821, GcpE, Enzyme involved in the deoxyxylulose pathway of
           isoprenoid biosynthesis [Lipid metabolism].
          Length = 361

 Score = 28.6 bits (64), Expect = 3.4
 Identities = 28/130 (21%), Positives = 46/130 (35%), Gaps = 25/130 (19%)

Query: 296 KDIGDTMRIDLMENP--------DILKIIGHHQCRPSIV-------VGFAAETQCIEQNA 340
           + IGDT+R+ L  +P        +IL+ +G       ++         F       E   
Sbjct: 224 EGIGDTIRVSLTADPVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQ 283

Query: 341 REKLLNKGADFIVSNCIL--------PDTGFVGKEWNKVSIVFPDKIEEYPELPKAEVAD 392
           R + L       V  C++         D G  G    K S     K E   +LP+ ++ +
Sbjct: 284 RLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGG--GKGSGPVFVKGEIIKKLPEEDIVE 341

Query: 393 RLCHLIVEHL 402
            L  LI  + 
Sbjct: 342 ELEALIEAYA 351


>gnl|CDD|143916 pfam00148, Oxidored_nitro, Nitrogenase component 1 type
           Oxidoreductase. 
          Length = 398

 Score = 28.4 bits (64), Expect = 4.0
 Identities = 16/92 (17%), Positives = 29/92 (31%), Gaps = 25/92 (27%)

Query: 190 LKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISGPVS------ 243
           L GKR  +   P                      +A+ L   G EV+ +           
Sbjct: 270 LAGKRVAIYGDPDLA-----------------WGLARFLEELGMEVVAVGTGTGHPDDYE 312

Query: 244 --IADPPNVMTIHVERAEDMLQEVLKALPVDI 273
              A     + +  +   + L+E++K L  D+
Sbjct: 313 RLKALLDGTLRVIDDADLEELEELIKELKPDL 344


>gnl|CDD|32697 COG2870, RfaE, ADP-heptose synthase, bifunctional sugar
           kinase/adenylyltransferase [Cell envelope biogenesis,
           outer membrane].
          Length = 467

 Score = 27.9 bits (62), Expect = 4.5
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 258 AEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGDTMRIDLMENPDILKIIG 317
            ED  +E+++A+  DI V      D++  KI G  I     G+ + I   E     KII 
Sbjct: 405 DEDTPEELIEAVKPDILV---KGGDYKIEKIVGADIVEAYGGEVLLIPFEEGKSTTKIIE 461


>gnl|CDD|153131 cd01581, AcnB, Aconitate hydratase B catalyses the formation of
           cis-aconitate from citrate as part of the TCA cycle.
           Aconitase B catalytic domain. Aconitate hydratase B
           catalyses the formation of cis-aconitate from citrate as
           part of the TCA cycle. Aconitase has an active (4FE-4S)
           and an inactive (3FE-4S) form. The active cluster is
           part of the catalytic site that interconverts citrate,
           cis-aconitase and isocitrate. The domain architecture of
           aconitase B is different from other aconitases in that
           the catalytic domain is normally found at C-terminus for
           other aconitases, but it is at N-terminus for B family.
           It also has a HEAT domain before domain 4 which plays a
           role in protein-protein interaction. This alignment is
           the core domain including domains 1,2 and 3.
          Length = 436

 Score = 27.8 bits (62), Expect = 5.4
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 97  HVAHGMVYDLASAILLAKGDQPVLIAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGA 156
           ++ H   +  A+ IL  K  +P  +        W  P T+ +  ILQ++G Y I  ++GA
Sbjct: 330 NIGH---FRAAAKILRGKEFKPTRL--------WVAPPTRMDWAILQEEGYYSIFGDAGA 378

Query: 157 MAESNG 162
             E  G
Sbjct: 379 RTEMPG 384


>gnl|CDD|147488 pfam05327, RRN3, RNA polymerase I specific transcription initiation
           factor RRN3.  This family consists of several eukaryotic
           proteins which are homologous to the yeast RRN3 protein.
           RRN3 is one of the RRN genes specifically required for
           the transcription of rDNA by RNA polymerase I (Pol I) in
           Saccharomyces cerevisiae.
          Length = 550

 Score = 27.6 bits (62), Expect = 5.7
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 16/46 (34%)

Query: 309 NPDILKIIGHHQCRPSIVVGFAAETQ------C---IEQNAREKLL 345
           NP  LK      C PS+V  FA   +      C   IE+N RE+L 
Sbjct: 464 NP--LKY-----CLPSVVTEFARIARHLQLVYCYSIIERNKRERLS 502


>gnl|CDD|147425 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase. 
          Length = 430

 Score = 27.4 bits (61), Expect = 6.6
 Identities = 27/120 (22%), Positives = 35/120 (29%), Gaps = 21/120 (17%)

Query: 218 GQQGHAIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMV 277
           G  G   A SL   GA VI     V+  DP              LQ  ++   V    + 
Sbjct: 219 GDVGKGCAASLRGQGARVI-----VTEIDPICA-----------LQAAMEGYQV--VTLE 260

Query: 278 SAVSDWRFPKIAGTKIKRKDIGDTMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIE 337
             V D     I  T     DI        M+   I+  IGH  C   +        +   
Sbjct: 261 EVVKD---ADIFVTTTGCVDIIVGRHFMNMKKDAIVCNIGHFDCEIDVGWLNYNAKKITN 317


>gnl|CDD|34719 COG5117, NOC3, Protein involved in the nuclear export of
           pre-ribosomes [Translation, ribosomal structure and
           biogenesis / Intracellular trafficking and secretion].
          Length = 657

 Score = 27.4 bits (60), Expect = 8.2
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 269 LPVDIAVMVSAVSDW---RFPKIAGTKIKRKDIGDTMRIDLMENPD 311
            P +    +  +S     R+   +  K    DIG      +  NPD
Sbjct: 576 SPEEFKGAILDISAKLDIRYSDCSNLKCSEFDIGAGNVDSIPSNPD 621


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0737    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,902,438
Number of extensions: 260752
Number of successful extensions: 755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 739
Number of HSP's successfully gapped: 34
Length of query: 405
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 309
Effective length of database: 4,189,273
Effective search space: 1294485357
Effective search space used: 1294485357
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)