BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780622|ref|YP_003065035.1| bifunctional
phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
[Candidatus Liberibacter asiaticus str. psy62]
(405 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780622|ref|YP_003065035.1| bifunctional phosphopantothenoylcysteine
decarboxylase/phosphopantothenate synthase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 405
Score = 835 bits (2157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/405 (100%), Positives = 405/405 (100%)
Query: 1 MDLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRV 60
MDLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRV
Sbjct: 1 MDLSGKKIALIMCGSVAVYKSLDLIRRLRERGAVVIPVMTKSAQKFITPLIVGAISNRRV 60
Query: 61 YTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVL 120
YTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVL
Sbjct: 61 YTHLLSYKEGYESNHIQLANECDLLVVAPASANFIAHVAHGMVYDLASAILLAKGDQPVL 120
Query: 121 IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITW 180
IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITW
Sbjct: 121 IAPAMNFMMWAKPATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITW 180
Query: 181 LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG 240
LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG
Sbjct: 181 LLYKSKELLLKGKRALVTSGPTYEPLDPMRYIANRSSGQQGHAIAKSLAYFGAEVILISG 240
Query: 241 PVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD 300
PVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD
Sbjct: 241 PVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGTKIKRKDIGD 300
Query: 301 TMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPD 360
TMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPD
Sbjct: 301 TMRIDLMENPDILKIIGHHQCRPSIVVGFAAETQCIEQNAREKLLNKGADFIVSNCILPD 360
Query: 361 TGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRLCHLIVEHLGMK 405
TGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRLCHLIVEHLGMK
Sbjct: 361 TGFVGKEWNKVSIVFPDKIEEYPELPKAEVADRLCHLIVEHLGMK 405
>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
Liberibacter asiaticus str. psy62]
Length = 254
Score = 26.6 bits (57), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)
Query: 216 SSGQQGH-AIAKSLAYFGAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDI 273
S GQQ IA++LA EVIL+ P S DP I E+++ E+ ++L + I
Sbjct: 152 SGGQQQRVCIARALA-VNPEVILMDEPCSALDP-----IATASVEELIHELRESLTIVI 204
>gi|254780388|ref|YP_003064801.1| hypothetical protein CLIBASIA_01365 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 458
Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 343 KLLNKGADFIVSNCILPDTGFVGKEWNKVSIVFPDKI 379
K + A + +SNC P++ F ++++ +F D+I
Sbjct: 409 KTQQEKARYFLSNCASPNSFFEANSTHELNKIFRDRI 445
>gi|254780592|ref|YP_003065005.1| TPR repeat-containing protein [Candidatus Liberibacter asiaticus
str. psy62]
Length = 271
Score = 25.4 bits (54), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 165 VGRMSEPCDIIRQITWLLYKSKELLLKGKRALVTSGPTYEPLD 207
VGR ++ ++RQ+ L + +E+L ++L +G E LD
Sbjct: 83 VGRTAQALAVMRQVAILYPEDQEVLAAYGKSLANAGYLDEGLD 125
>gi|254781102|ref|YP_003065515.1| UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 497
Score = 24.3 bits (51), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 134 ATQRNVEILQKDGCYFIGPESGAMAESNGYGVGRMSEPCDIIRQITWLL 182
A + +E+L K + + G +MS CDIIR+I L+
Sbjct: 448 AIRTAIEMLNKQDVLVVAGKGHETVHIVTNGEKKMSVDCDIIREILGLI 496
>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
asiaticus str. psy62]
Length = 1187
Score = 24.3 bits (51), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 41 KSAQKFITPLIVGAISNRRVYTHLLSYKEGYESNHIQLANECDLL 85
K +K T + ++ + +L +G+E+ H+ L E DLL
Sbjct: 434 KKIKKINTLTEINSLLKEEIAAVILPINQGFETKHMILVTETDLL 478
>gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 448
Score = 23.9 bits (50), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 232 GAEVILISGPVSIADPPNVMTIHVERAEDMLQEVLKALPVDIAVMVSAVSDWRFPKIAGT 291
G VI++ +I + +M + E M +L+ + VM S + RF G
Sbjct: 246 GDRVIIVDEKGAIVNGDQIMALIAR--EWMSHSLLRGNGIVTTVM-SNIGLERFIAGLGL 302
Query: 292 KIKRKDIGDTMRIDLMEN 309
+KR ++GD ++ M+N
Sbjct: 303 SLKRTEVGDRYIMEYMKN 320
>gi|254780453|ref|YP_003064866.1| orotidine 5'-phosphate decarboxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 238
Score = 23.5 bits (49), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 209 MRYIANRSSGQQGHAIAKSLAYFGAEVILISGP-VSIADP 247
+R + + + GQ+ A ++ +GA I++S P V ADP
Sbjct: 184 IRMLGSATDGQKRFATPETALKYGASHIVVSRPIVRAADP 223
>gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 369
Score = 23.1 bits (48), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 3 LSGKKIALIMCGSVA--VYKSLDLIRRLRERGAVVIPVMTKSAQKFIT 48
+S + L++ G V+ ++ L L+ RG V + + A+ FIT
Sbjct: 1 MSENNVILLVAGGTGGHVFPAVALSHELKNRGYAVYLITDRRARSFIT 48
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.321 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,028
Number of Sequences: 1233
Number of extensions: 10148
Number of successful extensions: 37
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 14
length of query: 405
length of database: 328,796
effective HSP length: 76
effective length of query: 329
effective length of database: 235,088
effective search space: 77343952
effective search space used: 77343952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 39 (19.6 bits)