HHsearch alignment for GI: 254780623 and conserved domain: PTZ00263
>PTZ00263 protein kinase A catalytic subunit; Provisional.
Probab=98.72 E-value=9.4e-08 Score=79.27 Aligned_cols=145 Identities=18% Similarity=0.265 Sum_probs=91.4
Q ss_pred HHHH--HHHHHHHHHHHHHHHEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9867--66677888865555021288872368764031046887777889998753211468543346917999999988
Q gi|254780623|r 121 CEFD--DPIAAASIAQVHPAVVHDINGYRKVAVKIIRPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQV 198 (517)
Q Consensus 121 ~~fd--ePlasASiaQVh~A~l~d~~~g~~VaVKV~rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 198 (517)
T Consensus 18 ~dyei~~~LG~G~fG~V~~a~~k~--t~~~~AiK~i~k~~~----------------~----------~~-----~~~~~ 64 (329)
T PTZ00263 18 SDFEMGETLGTGSFGRVRIAKHKG--TGEYYAIKCLKKREI----------------L----------KM-----KQVQH 64 (329)
T ss_pred CCCEEEEEEECCCCCEEEEEEECC--CCCEEEEEEEEHHHC----------------C----------CH-----HHHHH
T ss_conf 063898897327380999999989--998999999837884----------------5----------98-----99999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHHCCCC--EEEEECCCCCCCCHHHHHHHHCCCHHHH----HHHHHH
Q ss_conf 7888655999988987202446776643000010221783--3530024786324267733200225689----999999
Q gi|254780623|r 199 TKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNRTERD--VITMEWIDGVKISDTEKLRACGHDLERL----SVTLVQ 272 (517)
Q Consensus 199 l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~st~~--VLvmE~i~G~~i~d~~~l~~~~~d~~~l----a~~l~~ 272 (517)
T Consensus 65 ------~~~E~~il~~l~-----Hp~--Iv~l~~~f~~~~~lylvmEy~~gGdL~~~--l~~~~~l~e~~a~~~~~qi~~ 129 (329)
T PTZ00263 65 ------VAQEKSILMELS-----HPF--IVNMMCSFQDENRVYFLLEFVVGGELFTH--LRKAGRFPNDVAKFYHAELVL 129 (329)
T ss_pred ------HHHHHHHHHHCC-----CCC--CCEEEEEEEECCEEEEEEECCCCCCHHHH--HHHCCCCCHHHHHHHHHHHHH
T ss_conf ------999999999779-----989--89099999989999999986899858999--976489999999999999999
Q ss_pred HHHHHHHHCCEECCCCCCCEEEEECCCCEEEEECCHHEECCH
Q ss_conf 999989744866178786228980289535743403121698
Q gi|254780623|r 273 SFLLHTLRDGFFHADLHPGNLFVDSKGYIVAVDMGITGRLSK 314 (517)
Q Consensus 273 ~~~~qi~~~GfFHaDPHpGNi~v~~dg~i~~lDfG~vg~l~~ 314 (517)
T Consensus 130 a-L~yLH~~~IiHRDLKPeNILl~~~g~vKL~DFGlak~~~~ 170 (329)
T PTZ00263 130 A-FEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD 170 (329)
T ss_pred H-HHHHHHCCCEECCCCCCCEEECCCCCEEECCHHHHHCCCC
T ss_conf 9-9999978886043354324674799886234055420675