HHsearch alignment for GI: 254780623 and conserved domain: TIGR01982

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232 This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process.
Probab=100.00  E-value=0  Score=1029.68  Aligned_cols=437  Identities=50%  Similarity=0.830  Sum_probs=419.1

Q ss_pred             HHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf             898999999999615798655313312678887753200234655-5680789999999604289999999971004598
Q gi|254780623|r    4 YYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIK-KCQRSDRLARAMNRLGPSYVKMGQFLATRPDLIG   82 (517)
Q Consensus         4 ~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~rlr~~le~LGptfiKlGQ~lstR~Dllp   82 (517)
T Consensus         1 ~~RL~~I~~vl~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RLr~ALe~LGP~fIKfGQ~LSTR~Dl~p   79 (452)
T TIGR01982         1 LKRLIRIIRVLIRYGFLALVES-IGPLSLRLLRRLLLPVSNREARARMSRGERLRLALEELGPTFIKFGQTLSTRADLLP   79 (452)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEHHCCHHHHHCCCCC
T ss_conf             9148999999998423554200-103789988666433331202362334348999998508501303144752203564


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHH------HCCC-CHHHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEE
Q ss_conf             8999999988748878998999998754------0478-89999998676-66778888655550212888723687640
Q gi|254780623|r   83 KKLSEDLALLQDKMDFFPTNTARLSVAS------ALKA-PIEELYCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKII  154 (517)
Q Consensus        83 ~~~~~eL~~Lqd~vpp~~~~~v~~~ie~------elg~-~~~~~F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~  154 (517)
T Consensus        80 ~~~a~eL~~LQD~vPpF~~~~~r~~Ie~lrdiyv~LG~~p~~~~F~~F~e~P~AaASIAQVH~A~l~~G~~r~~VaVKVl  159 (452)
T TIGR01982        80 AEIAEELSLLQDKVPPFDFKAARKVIEALRDIYVALGREPVEELFAEFDEKPLAAASIAQVHKARLVDGATRKEVAVKVL  159 (452)
T ss_pred             HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCEEEEEEE
T ss_conf             56999999860326899888999999999999998388804677530378426663043020325222897455789876


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH
Q ss_conf             31046887777889998753211468543346917999999988788865599998898720244677664300001022
Q gi|254780623|r  155 RPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR  234 (517)
Q Consensus       155 rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~  234 (517)
T Consensus       160 RP~i~~~i~~D~~~L~~~A~~ve~~~~~~~RlrP~evV~~f~~~l~~ELDl~~Eaa~A~~L~~Nf~~d~~~~vP~V~W~~  239 (452)
T TIGR01982       160 RPGIEKKIEADIKLLYRLARIVERLLPDSRRLRPTEVVKEFEKTLRNELDLRREAANASELGENFKNDPGLYVPEVYWDY  239 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf             59818999999999999999987425112554603678899999998764999999999999987407870874575585


Q ss_pred             CCCCEEEEECCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECCHH
Q ss_conf             17833530024786324267733200-22568999999999998974486617878622898028----95357434031
Q gi|254780623|r  235 TERDVITMEWIDGVKISDTEKLRACG-HDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMGIT  309 (517)
Q Consensus       235 st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG~v  309 (517)
T Consensus       240 Ts~~vlTmEwIdGip~~D~~~L~~~G~~D~~~lA~~~~~sF~~Qv~rDGfFHAD~HpGNI~v~~d~~~Ng~i~~~DFGIV  319 (452)
T TIGR01982       240 TSERVLTMEWIDGIPLSDIAALDEAGLLDLKALAENLVRSFLNQVLRDGFFHADLHPGNIFVLKDPERNGKIIALDFGIV  319 (452)
T ss_pred             CCCCCCEEHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf             76532100103552533589996468978889999999999999997158878847566332478776880899853742


Q ss_pred             EECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHC
Q ss_conf             21698999999976699971872789999998412667789368999999852100133433311356899999754527
Q gi|254780623|r  310 GRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELF  389 (517)
Q Consensus       310 g~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  389 (517)
T Consensus       320 G~l~~~~r~~LAE~l~Gf~~rDY~~VA~~H~~aGyvp~~~d~~~f~~a~R~~~EP~~g~Pl~~IS~g~~L~~LF~~t~~f  399 (452)
T TIGR01982       320 GRLSEEDRRYLAEILYGFINRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIFGQPLKEISVGKLLAKLFKITRDF  399 (452)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf             00137889999999999985429999999986258884356999999862001543366677402899999999999870


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             9712888999999999988499876889888999999999999864596889
Q gi|254780623|r  390 DMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSC  441 (517)
Q Consensus       390 ~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~  441 (517)
T Consensus       400 ~m~~qP~L~LLqKTl~~vEGvgR~LdP~~~~W~~A~P~v~~w~~~~~gp~~~  451 (452)
T TIGR01982       400 NMEVQPQLLLLQKTLLTVEGVGRQLDPDLNLWKVAEPFVKKWIRKRLGPKAK  451 (452)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf             7856815899999876452102450888788899899999998732670104