HHsearch alignment for GI: 254780623 and conserved domain: TIGR01982
>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase; InterPro: IPR010232 This entry represents the enzyme (UbiB) which catalyses the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria , . The gene is also known as AarF in certain species. It is believed that the reaction converts 2-polyprenylphenol to 6-hydroxy-2-polyprenylphenol. Members are mainly proteobacteria.; GO: 0006744 ubiquinone biosynthetic process.
Probab=100.00 E-value=0 Score=1029.68 Aligned_cols=437 Identities=50% Similarity=0.830 Sum_probs=419.1
Q ss_pred HHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC-CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
Q ss_conf 898999999999615798655313312678887753200234655-5680789999999604289999999971004598
Q gi|254780623|r 4 YYELFRIAWILIREGVIVSLPSDRLPPIIVFGKKIASLFVRRNIK-KCQRSDRLARAMNRLGPSYVKMGQFLATRPDLIG 82 (517)
Q Consensus 4 ~~R~~~i~~v~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~rlr~~le~LGptfiKlGQ~lstR~Dllp 82 (517)
T Consensus 1 ~~RL~~I~~vl~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~RLr~ALe~LGP~fIKfGQ~LSTR~Dl~p 79 (452)
T TIGR01982 1 LKRLIRIIRVLIRYGFLALVES-IGPLSLRLLRRLLLPVSNREARARMSRGERLRLALEELGPTFIKFGQTLSTRADLLP 79 (452)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCEEEHHCCHHHHHCCCCC
T ss_conf 9148999999998423554200-103789988666433331202362334348999998508501303144752203564
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH------HCCC-CHHHHHHHHHH-HHHHHHHHHHHHHHEECCCCCCEEEEEEE
Q ss_conf 8999999988748878998999998754------0478-89999998676-66778888655550212888723687640
Q gi|254780623|r 83 KKLSEDLALLQDKMDFFPTNTARLSVAS------ALKA-PIEELYCEFDD-PIAAASIAQVHPAVVHDINGYRKVAVKII 154 (517)
Q Consensus 83 ~~~~~eL~~Lqd~vpp~~~~~v~~~ie~------elg~-~~~~~F~~fde-PlasASiaQVh~A~l~d~~~g~~VaVKV~ 154 (517)
T Consensus 80 ~~~a~eL~~LQD~vPpF~~~~~r~~Ie~lrdiyv~LG~~p~~~~F~~F~e~P~AaASIAQVH~A~l~~G~~r~~VaVKVl 159 (452)
T TIGR01982 80 AEIAEELSLLQDKVPPFDFKAARKVIEALRDIYVALGREPVEELFAEFDEKPLAAASIAQVHKARLVDGATRKEVAVKVL 159 (452)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHCCEEEEECCCCCCCEEEEEEE
T ss_conf 56999999860326899888999999999999998388804677530378426663043020325222897455789876
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHCCCHH
Q ss_conf 31046887777889998753211468543346917999999988788865599998898720244677664300001022
Q gi|254780623|r 155 RPGVRKRFFRDIQVMYLIARIQEKLLPSMRRLCFSAVVRALEQVTKMEMDLRLEAAAFSEMAENTVKDQGFRVPKIDWNR 234 (517)
Q Consensus 155 rP~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ElD~~~Ea~n~~~~~~~~~~~~~v~vP~vy~~~ 234 (517)
T Consensus 160 RP~i~~~i~~D~~~L~~~A~~ve~~~~~~~RlrP~evV~~f~~~l~~ELDl~~Eaa~A~~L~~Nf~~d~~~~vP~V~W~~ 239 (452)
T TIGR01982 160 RPGIEKKIEADIKLLYRLARIVERLLPDSRRLRPTEVVKEFEKTLRNELDLRREAANASELGENFKNDPGLYVPEVYWDY 239 (452)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 59818999999999999999987425112554603678899999998764999999999999987407870874575585
Q ss_pred CCCCEEEEECCCCCCCCHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHCCEECCCCCCCEEEEECC----CCEEEEECCHH
Q ss_conf 17833530024786324267733200-22568999999999998974486617878622898028----95357434031
Q gi|254780623|r 235 TERDVITMEWIDGVKISDTEKLRACG-HDLERLSVTLVQSFLLHTLRDGFFHADLHPGNLFVDSK----GYIVAVDMGIT 309 (517)
Q Consensus 235 st~~VLvmE~i~G~~i~d~~~l~~~~-~d~~~la~~l~~~~~~qi~~~GfFHaDPHpGNi~v~~d----g~i~~lDfG~v 309 (517)
T Consensus 240 Ts~~vlTmEwIdGip~~D~~~L~~~G~~D~~~lA~~~~~sF~~Qv~rDGfFHAD~HpGNI~v~~d~~~Ng~i~~~DFGIV 319 (452)
T TIGR01982 240 TSERVLTMEWIDGIPLSDIAALDEAGLLDLKALAENLVRSFLNQVLRDGFFHADLHPGNIFVLKDPERNGKIIALDFGIV 319 (452)
T ss_pred CCCCCCEEHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 76532100103552533589996468978889999999999999997158878847566332478776880899853742
Q ss_pred EECCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHC
Q ss_conf 21698999999976699971872789999998412667789368999999852100133433311356899999754527
Q gi|254780623|r 310 GRLSKRERRFLAEILYGFISRDYQRVADVHFEAGYVPRHHNRFSFAQAIRAIGEPIHGQSSDVISMGKLLTMLFEITELF 389 (517)
Q Consensus 310 g~l~~~~r~~l~~l~~a~~~~D~~~~~~~l~~lg~~~~~~d~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 389 (517)
T Consensus 320 G~l~~~~r~~LAE~l~Gf~~rDY~~VA~~H~~aGyvp~~~d~~~f~~a~R~~~EP~~g~Pl~~IS~g~~L~~LF~~t~~f 399 (452)
T TIGR01982 320 GRLSEEDRRYLAEILYGFINRDYRRVAEVHFDAGYVPSDTDMAEFEQAIRAIGEPIFGQPLKEISVGKLLAKLFKITRDF 399 (452)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHCCHHHHHHHHHHHHHHC
T ss_conf 00137889999999999985429999999986258884356999999862001543366677402899999999999870
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 9712888999999999988499876889888999999999999864596889
Q gi|254780623|r 390 DMMTRPELVMLQKTMVVVEGVARMLNPEFNMWVSSEPIVEEWIRDHLGAKSC 441 (517)
Q Consensus 390 ~~~~P~~~~ll~r~l~~lEG~~~~LdP~~d~~~~~~p~~~~~l~~~~~p~~~ 441 (517)
T Consensus 400 ~m~~qP~L~LLqKTl~~vEGvgR~LdP~~~~W~~A~P~v~~w~~~~~gp~~~ 451 (452)
T TIGR01982 400 NMEVQPQLLLLQKTLLTVEGVGRQLDPDLNLWKVAEPFVKKWIRKRLGPKAK 451 (452)
T ss_pred CCCCCCHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 7856815899999876452102450888788899899999998732670104